b5c574c61d
gnu: r-rstudioapi: Update to 0.5.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.5.
2016-04-26 17:06:17 +02:00
06a4af1283
gnu: r-git2r: Update to 0.14.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.14.0.
2016-04-26 17:06:17 +02:00
904fa49de6
gnu: r-roxygen2: Update to 5.0.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 5.0.1.
2016-04-26 17:06:17 +02:00
2448c723b7
gnu: r-cluster: Update to 2.0.4.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.4.
2016-04-26 17:06:17 +02:00
618dbdd7c0
gnu: r-memoise: Update to 1.0.0.
...
* gnu/packages/statistics.scm (r-memoise): Update to 1.0.0.
2016-04-26 17:06:17 +02:00
8e4edf0802
gnu: r-microbenchmark: Update to 1.4-2.1.
...
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-2.1.
2016-04-26 17:06:17 +02:00
bb61b765c0
gnu: r-knitr: Update to 1.12.3.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.12.3.
2016-04-26 17:06:17 +02:00
1cfa88e988
gnu: r-formatr: Update to 1.3.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.3.
2016-04-26 17:06:17 +02:00
49089e06ec
gnu: r-evaluate: Update to 0.8.3.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.8.3.
2016-04-26 17:06:17 +02:00
2c8fa9d702
gnu: r-bh: Update to 1.60.0-1.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-1.
2016-04-26 17:06:17 +02:00
b268e49691
gnu: r-ggplot2: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.1.0.
2016-04-26 17:06:17 +02:00
cf2e19a95a
gnu: r-scales: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-scales): Update to 0.4.0.
2016-04-26 17:06:17 +02:00
9ee6d314c4
gnu: r-stringi: Update to 1.0-1.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.0-1.
2016-04-26 17:06:17 +02:00
a99bed8cf3
gnu: r-munsell: Update to 0.4.3.
...
* gnu/packages/statistics.scm (r-munsell): Update to 0.4.3.
2016-04-26 17:06:17 +02:00
fe2087ccd8
gnu: r-digest: Update to 0.6.9.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.9.
[arguments]: Disable tests and vignettes.
2016-04-26 17:06:17 +02:00
bae7953852
gnu: Add r-hexbin.
...
* gnu/packages/statistics.scm (r-hexbin): New variable.
2016-04-26 17:06:17 +02:00
94b7e9b7b4
gnu: Add r-tidyr.
...
* gnu/packages/statistics.scm (r-tidyr): New variable.
2016-04-26 17:06:17 +02:00
c26c062838
gnu: Add r-openssl.
...
* gnu/packages/statistics.scm (r-openssl): New variable.
2016-04-26 17:06:17 +02:00
35b2001a14
gnu: Add r-praise.
...
* gnu/packages/statistics.scm (r-praise): New variable.
2016-04-26 17:06:17 +02:00
fb868e3395
gnu: r-acsnminer: Update to 0.16.01.29.
...
* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.01.29.
2016-04-26 17:06:17 +02:00
e1c2ad6777
gnu: r-qtl: Update to 1.39-5.
...
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.39-5.
2016-04-26 17:06:17 +02:00
2ff8212eb9
gnu: r-curl: Update to 0.9.7.
...
* gnu/packages/web.scm (r-curl): Update to 0.9.7.
2016-04-26 17:06:17 +02:00
c0bfa472bd
gnu: r-htmlwidgets: Update to 0.6.
...
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.6.
2016-04-26 17:06:17 +02:00
46a2d1b66f
gnu: r-servr: Update to 0.4.
...
* gnu/packages/web.scm (r-servr): Update to 0.4.
2016-04-26 17:06:17 +02:00
73d5d4aa63
gnu: r-jsonlite: Update to 0.9.19.
...
* gnu/packages/web.scm (r-jsonlite): Update to 0.9.19.
2016-04-26 17:06:17 +02:00
c587725a69
gnu: r-rcpp: Update to 0.12.4.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.4.
2016-04-26 17:06:17 +02:00
6b49a37e6b
gnu: Add filevercmp.
...
* gnu/packages/bioinformatics.scm (filevercmp): New variable.
2016-04-26 16:41:15 +02:00
547cb17daf
gnu: pinentry: Update to 0.9.7.
...
* gnu/packages/gnupg.scm (pinentry): Update to 0.9.7.
2016-04-26 15:28:54 +03:00
82f4414271
gnu: manaplus: Update to 1.6.4.23.
...
* gnu/packages/games.scm (manaplus): Update to 1.6.4.23.
2016-04-26 12:41:26 +03:00
d1dfa22f9f
gnu: git-modes: Update to 1.2.2.
...
* gnu/packages/emacs.scm (git-modes): Update to 1.2.2.
2016-04-26 12:41:26 +03:00
ffefa3da1a
gnu: emacs-with-editor: Update to 2.5.1.
...
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.1.
2016-04-26 12:41:26 +03:00
edf6015c7d
gnu: magit: Update to 2.6.1.
...
* gnu/packages/emacs.scm (magit): Update to 2.6.1.
2016-04-26 12:41:25 +03:00
f674439433
gnu: Add xfce4-taskmanager.
...
* gnu/packages/xfce.scm (xfce4-taskmanager): Add variable.
2016-04-26 09:25:03 +08:00
f79ee25f32
gnu: woff2: Fix build parallelism.
...
* gnu/packages/patches/woff2-libbrotli.patch: Add dependency of
executables on object files.
2016-04-25 18:38:50 -05:00
a800018e03
gnu: python2-pysnptools: Update to 0.3.9.
...
* gnu/packages/python.scm (python2-pysnptools): Update to 0.3.9.
[propagated-inputs]: Add python2-pytz. Move python2-pandas ...
[inputs]: ... to here. Add python2-dateutil-2, python2-six.
2016-04-25 23:35:39 +03:00
783fb0a3a2
gnu: python-terminado: Update to 0.6.
...
* gnu/packages/python.scm (python-terminado): Update to 0.6.
[inputs]: Remove python-setuptools. Move python-nose ...
[native-inputs]: ... to here.
[properties]: Define python2-variant.
(python2-terminado): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
2016-04-25 17:19:54 +03:00
bdb67d846c
gnu: python-singledispatch: Rearrange inputs.
...
* gnu/packages/python.scm (python-singledispatch)[propagated-inputs]:
Move python-six ...
[inputs]: ... to here.
2016-04-25 17:17:51 +03:00
b455439bcd
gnu: python-tornado: Rearrange inputs.
...
* gnu/packages/python.scm (python-tornado)[properties]: Define
python2-variant.
[inputs]: Remove python-certifi, move python-backports-abc here from
native-inputs.
[native-inputs]: Remove python-setuptools.
(python2-tornado): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
2016-04-25 15:50:22 +03:00
fc899d4f73
gnu: python-seaborn: Update to 0.7.0.
...
* gnu/packages/python.scm (python-seaborn): Update to 0.7.0.
[native-inputs]: Remove python-setuptools.
(python2-seaborn): Build with 'strip-python2-variant'.
[propagated-inputs]: Add python2-pytz.
[native-inputs]: Add python2-setuptools.
2016-04-25 15:28:00 +03:00
4260372671
gnu: python-pandas: Rearrange inputs.
...
* gnu/packages/python.scm (python-pandas)[propagated-inputs]: Move
python-pytz, python-dateutil-2 ...
[inputs]: ... to here.
2016-04-25 15:27:59 +03:00
85f0945916
gnu: xfce: Add ristretto.
...
* gnu/packages/xfce.scm (xfce)[propagated-inputs]: Add ristretto.
2016-04-25 08:30:54 +08:00
8e6352870d
gnu: Add ristretto.
...
* gnu/packages/xfce.scm (ristretto): Add variable.
2016-04-25 08:27:53 +08:00
763dd00b72
gnu: ncmpcpp: Update to 0.7.4.
...
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.4.
2016-04-24 19:25:29 -04:00
74182c4f31
gnu: borg: Update to 1.0.2.
...
* gnu/packages/backup.scm (borg): Update to 1.0.2.
2016-04-24 18:59:06 -04:00
4960beaa23
gnu: haunt: Update to 0.2.
...
* gnu/packages/guile.scm (haunt): Update to 0.2.
[native-inputs]: Add pkg-config and texinfo.
[propagated-inputs]: Add guile-reader.
2016-04-24 18:01:33 -04:00
76e6e663f5
gnu: guile-minikanren: Remove extra .scm on files.
...
* gnu/packages/guile.scm (guile-minikanren): Remove extra .scm appended
to files.
2016-04-24 23:47:21 +02:00
ae20189681
gnu: guix: Update development snapshot.
...
* gnu/packages/package-management.scm (guix-devel): Update to 80627f5
2016-04-24 23:46:06 +02:00
80c1375974
gnu: openldap: Update to 2.4.44 [fixes CVE-2015-6908].
...
* gnu/packages/openldap.scm (openldap)[replacement]: New field.
(openldap-2.4.44): New variable.
2016-04-24 15:01:41 -04:00
f0412aa2bd
gnu: python-feedgenerator: Update to 1.8.
...
* gnu/packages/python.scm (python-feedgenerator): Update to 1.8.
[arguments]: Remove configure flags.
[inputs]: Move python-setuptools, python-pytz, python-six ...
[native-inputs]: ... to here.
[home-page]: Update project's home-page.
2016-04-24 21:49:42 +03:00
d9f2dece1f
gnu: pelican: Rearrange inputs.
...
* gnu/packages/python.scm (pelican)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Move python-feedgenerator, python-jinja2,
python-pygments, python-docutils, python-pytz, python-blinker,
python-unidecode, python-six, python-dateutil-2 ...
[inputs]: ... to here.
2016-04-24 21:20:42 +03:00
194d0d9843
gnu: python2-itsdangerous: Use 'strip-python2-variant'.
...
* gnu/packages/python.scm (python2-itsdangerous): Use
'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
(python-itsdangerous)[inputs]: Remove python-setuptools.
[properties]: Define python2-variant.
2016-04-24 20:41:15 +03:00
59f151ec54
gnu: python2-oauthlib: Use python2-variant.
...
* gnu/packages/python.scm (python2-oauthlib): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
(python-oauthlib)[inputs]: Remove python-setuptools.
[properties]: Define python2-variant for python2-oauthlib.
2016-04-24 20:31:23 +03:00
79b555edeb
gnu: samtools: Update to 1.3.1.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.1.
2016-04-24 09:45:07 +10:00
e969b140a4
Revert "Merge branch 'gnome-updates'"
...
This reverts commit 63655d459e80627f51f0
2016-04-23 13:13:53 -04:00
267061ba0b
Revert "gnu: inkscape: Fix build with glibmm-2.48."
...
This reverts commit 0118c6ab62
2016-04-23 13:12:53 -04:00
e4a7039e46
Revert "gnu: geoclue: Update to 2.4.3."
...
This reverts commit 71a8d3b67c
2016-04-23 13:12:51 -04:00
c4eefd63fa
Revert "gnu: gjs: Skip test_utf8_inout test."
...
This reverts commit 63e7796f62
2016-04-23 13:12:49 -04:00
63e7796f62
gnu: gjs: Skip test_utf8_inout test.
...
* gnu/packages/gnome.scm (gjs)[arguments]: Skip test_utf8_inout test.
2016-04-23 20:15:32 +08:00
71a8d3b67c
gnu: geoclue: Update to 2.4.3.
...
* gnu/packages/gnome.scm (geoclue): Update to 2.4.3.
2016-04-23 20:15:32 +08:00
0118c6ab62
gnu: inkscape: Fix build with glibmm-2.48.
...
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/inkscape.scm (inkscape)[source]: Add patch.
2016-04-23 05:05:18 -04:00
e993fb8493
gnu: imlib2: Fix CVE-2016-4024.
...
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (imlib2): Use it.
2016-04-22 23:59:37 -04:00
baa8be83e9
gnu: imlib2: Update to 1.4.8.
...
gnu/packages/image.scm (imlib2): Update to 1.4.8.
2016-04-22 23:58:33 -04:00
63655d459e
Merge branch 'gnome-updates'
2016-04-23 10:19:32 +08:00
80627f51f0
gnu: webkitgtk-2.4: Update to 2.4.11.
...
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.4.11.
2016-04-22 22:05:45 -04:00
bd2048585a
gnu: webkitgtk: Update to 2.12.1.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.1.
2016-04-22 22:05:45 -04:00
c1ed117941
gnu: linux-libre-4.1: Update to 4.1.22.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.22.
2016-04-22 21:50:00 -04:00
01963db007
gnu: linux-libre-4.4: Update to 4.4.8.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.8.
2016-04-22 21:50:00 -04:00
a2cc073aa2
gnu: linux-libre: Update to 4.5.2.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.5.2.
2016-04-22 21:50:00 -04:00
dc9bdb1e27
gnu: Add acpi.
...
* gnu/packages/linux.scm (acpi): New variable.
2016-04-21 17:49:10 +02:00
f8f83e9d21
gnu: python-mox3: Update to 0.14.0.
...
* gnu/packages/openstack.scm (python-mox3): Update to 0.14.0.
[inputs]: Move python-fixtures, python-pbr, python-setuptools,
python-six, python-testtools ...
[native-inputs]: ... to here.
2016-04-20 16:18:58 +03:00
4b42bd941b
gnu: python-stevedore: Update to 1.12.0.
...
* gnu/packages/openstack.scm (python-stevedore): Update to 1.12.0.
[inputs]: Move python-setuptools, python-docutils, python-mock,
python-oslotest, python-sphinx ...
[native-inputs]: ... to here.
2016-04-20 16:18:58 +03:00
458b47e31b
gnu: armadillo: Update to 6.700.4.
...
* gnu/packages/maths.scm (armadillo): Update to 6.700.4.
2016-04-20 14:21:30 +02:00
083b3a0e25
gnu: git: Update to 2.7.4 [fixes CVE-2016-2315 and CVE-2016-2324].
...
* gnu/packages/version-control.scm (git): Update to 2.7.4.
(git-manpages)[source]: Update hash.
2016-04-19 20:39:05 -04:00
ab39d8cbc1
gnu: aria2: Update to 1.22.0.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.22.0.
2016-04-20 02:49:51 +03:00
ad25a1fab4
gnu: mpv: Update to 0.17.0.
...
* gnu/packages/video.scm (mpv): Update to 0.17.0.
2016-04-19 23:52:42 +03:00
1ad15c1669
gnu: Rename Java packages to match new naming specification.
...
* gnu/packages/bioinformatics.scm (htsjdk): Rename to...
(java-htsjdk): ...this.
(ngs-java): Rename to...
(java-ngs): ...this.
(ncbi-vdb)[arguments,inputs]: Use new name.
* gnu/packages/java.scm (swt): Rename to...
(java-swt): ...this.
* gnu/packages/music.scm (tuxguitar)[make-flags,inputs,arguments]: Use
new name of package "swt".
2016-04-19 16:55:03 +02:00
4d16cc5133
gnu: python2-plastid: Propagate setuptools.
...
* gnu/packages/bioinformatics.scm (python2-plastid)[native-inputs]: Move
python2-setuptools from here...
[propagated-inputs]: ...to here.
2016-04-19 16:12:51 +02:00
8694dca8f3
gnu: r: Update to 3.2.5.
...
* gnu/packages/statistics.scm (r): Update to 3.2.5.
2016-04-19 14:44:29 +02:00
349a314765
gnu: Add icedtea-8.
...
* gnu/packages/java.scm (icedtea-8): New variable.
2016-04-19 14:44:29 +02:00
a4e885f626
glib: Fix tests.
...
* gnu/packages/glib.scm (glib)[arguments]: Disable the "/application/local-actions"
test in 'disable-failing-tests' phase.
2016-04-19 20:02:44 +08:00
f94bf1983b
gnu: Add python-plastid.
...
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): New
variables.
2016-04-19 12:16:01 +02:00
4db9433aa0
gnu: Add python-twobitreader.
...
* gnu/packages/bioinformatics.scm (python-twobitreader,
python2-twobitreader): New variables.
2016-04-19 12:16:01 +02:00
3fd4b90d1d
gnu: Add cabextract.
...
* gnu/packages/compression.scm (cabextract): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18 16:02:53 -04:00
c21a256272
gnu: Add dillo.
...
* gnu/packages/dillo.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18 15:45:41 -04:00
cf1b55bd32
gnu: fltk: Add Xft support.
...
* gnu/packages/fltk.scm (fltk)[inputs]: Add libxft.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18 15:39:34 -04:00
cd76fbde6f
gnu: vlc: Make 'plugins.dat' generation reproducible.
...
Fixes <http://bugs.gnu.org/23307 >.
* gnu/packages/video.scm (vlc)[arguments]: Add #:phases.
2016-04-18 15:39:43 +02:00
4ef2721b52
gnu: vlc: Do not capture the build time.
...
* gnu/packages/video.scm (vlc)[source]: Add 'snippet'.
2016-04-18 12:08:31 +02:00
b4dff93550
gnu: vlc: Build against ffmpeg 2.8.
...
Fixes <http://bugs.gnu.org/23256 >.
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.
* gnu/packages/video.scm (vlc): Use FFMPEG-2.8 instead of FFMPEG.
2016-04-18 11:58:15 +02:00
940778c71c
gnu: ffmpeg: Re-add 2.8.6.
...
* gnu/packages/video.scm (ffmpeg-2.8): New variable.
2016-04-18 11:26:30 +02:00
9bb46c155b
gnu: ruby-bio-commandeer: Update to 0.1.3.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.1.3.
2016-04-18 14:58:43 +10:00
fac34dfe2a
gnu: Add python-pyusb.
...
* gnu/packages/libusb.scm (python-pyusb, python2-pyusb): New variables.
2016-04-17 21:48:51 +02:00
d99f6ffb4c
gnu: khard: Update to 0.9.0.
...
* gnu/packages/mail.scm (khard): Update to 0.9.0.
2016-04-17 14:35:11 -04:00
9bed9b150d
gnu: python-vobject: Update to 0.9.2.
...
* gnu/packages/python.scm (python-vobject, python2-vobject): Update to 0.9.2.
2016-04-17 14:35:11 -04:00
67157996e2
gnu: openssh: Fix CVE-2015-8325.
...
* gnu/packages/patches/openssh-CVE-2015-8325.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh): Use it.
2016-04-17 13:48:31 -04:00
a7d94b54c7
gnu: Add recordmydesktop.
...
* gnu/packages/video.scm (recordmydesktop): New variable.
2016-04-17 17:37:20 +02:00
534db46306
gnu: python-pandas: Fix test failures.
...
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: New
file.
* gnu-system.am (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-pandas)[source]: Add patch.
2016-04-17 11:36:25 +02:00
b711df02fd
gnu: icedtea-7: Update to 2.6.5.
...
* gnu/packages/java.scm (icedtea-7): Update to 2.6.5.
[inputs]: Add libxcomposite.
2016-04-17 11:15:53 +02:00
a78daf5e2b
gnu: kbd: Update to 2.0.3.
...
* gnu/packages/linux.scm (kbd): Update to 2.0.3.
2016-04-17 10:33:08 +03:00
5953d2b7c0
gnu: kbd: Use 'modify-phases'.
...
* gnu/packages/linux.scm (kbd)[arguments]: Use 'modify-phases'.
2016-04-17 10:33:08 +03:00
f6c8cb996b
gnu: Add marst.
...
* gnu/packages/marst.scm: New file.
* gnu-system.am: Add it.
2016-04-16 18:46:17 +02:00
Ricardo Wurmus