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257 Commits

Author SHA1 Message Date
Efraim Flashner e9d60ebadb
gnu: octave: Update to 4.2.1. 
* gnu/packages/maths.scm (octave): Update to 4.2.1.
 2017-03-01 11:33:08 +02:00
Federico Beffa a995251d68
gnu: wxmaxima: Downgrade to 16.04.2. 
* gnu/packages/maths.scm (wxmaxima): Do it.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-28 11:22:13 -05:00
Thomas Danckaert cbfbcb2105
gnu: coda: Update to 2.18. 
* gnu/packages/python.scm (coda): Update to 2.18.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-27 14:55:25 +01:00
John Darrington 1f45f18abe
installer: Aris: update synopis and description. 
* gnu/packages/maths.scm (aris): Use the synopsis and description from the
web page instead of the README file.
 2017-02-17 18:52:24 +01:00
John Darrington 193abc8232
gnu: Add aris. 
* gnu/packages/maths.scm(aris): New variable.
 2017-02-17 18:33:24 +01:00
Kei Kebreau 29da15738c
gnu: wxmaxima: Update to 16.12.2. 
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.2.
 2017-02-10 11:02:10 -05:00
Paul Garlick 4554813936
gnu: gmsh: Propagate opencascade-oce. 
* gnu/packages/maths.scm (gmsh)[propagated-inputs]: Add opencascade-oce.
[arguments]: Remove #:phases parameter for component8_in_a_box test

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-09 19:19:06 +01:00
Ben Woodcroft 182dde82ed
gnu: cddlib: Fix source URI. 
* gnu/packages/maths.scm (cddlib)[source]: Update source URI.
 2017-02-04 15:26:26 +10:00
ng0 c000b6b10f
gnu: reducelcs: Fix license. 
* gnu/packages/maths.scm (reducelcs)[license]: Change to GPL3+.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-01 19:51:36 -05:00
Paul Garlick 8a4d14fa71
gnu: gmsh: Update to 2.16.0 
* gnu/packages/maths.scm (gmsh): Update to 2.16.0

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-31 17:55:50 +01:00
ng0 54052a54c1
gnu: Add reducelcs. 
* gnu/packages/maths.scm (reducelcs): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-01-30 07:46:28 -05:00
Paul Garlick 5d4bd4cce1
gnu: Add opencascade-oce. 
* gnu/packages/maths.scm (opencascade-oce): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-30 10:52:45 +01:00
Marius Bakke 82110ef658
gnu: glpk: Update to 4.61. 
* gnu/packages/maths.scm (glpk): Update to 4.61.
[home-page]: Use HTTPS.
 2017-01-23 18:54:27 +01:00
Thomas Danckaert 7bbf2e39f7
gnu: hdf4: Update to 4.2.12. 
* gnu/packages/maths.scm (hdf4): Update to 4.2.12.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 15:55:57 +01:00
Ricardo Wurmus a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus b1c1f4d012
gnu: armadillo: Update to 7.600.2. 
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
 2016-12-29 21:49:12 +01:00
Thomas Danckaert db82557013
gnu: netcdf: Enable HDF4 support. 
* gnu/packages/maths.scm (netcdf)[inputs]: Add hdf4-alt and libjpeg.
  [arguments]: Add "--enable-hdf4" configure flag.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-24 14:41:50 +01:00
Kei Kebreau 5f80054053
gnu: gnuplot: Update to 5.0.5. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.5.
 2016-12-18 23:27:43 -05:00
Kei Kebreau 5a2604bfb6
gnu: wxmaxima: Update to 16.12.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.0.
 2016-12-18 14:05:40 -05:00
Kei Kebreau 4a652c78d4
gnu: maxima: Update to 5.39.0. 
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
 2016-12-18 12:57:09 -05:00
Tobias Geerinckx-Rice bea3cf4b90
gnu: gsl: Update to 2.3. 
* gnu/packages/maths.scm (gsl): Update to 2.3.
 2016-12-12 22:08:45 +01:00
Paul Garlick f81c6a4932
gnu: gmsh: Update to 2.15.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-09 19:14:21 +01:00
Eric Bavier a4b0bfb195
gnu: netcdf: Upgrade to 4.4.1.1. 
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this.  Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
 2016-12-01 23:50:09 -06:00
Leo Famulari dcd9d1637a
gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}]. 
* gnu/packages/maths.scm (hdf5): Update to 1.8.18.
[source]: Add alternate URL.
 2016-11-30 11:16:18 -05:00
Ludovic Courtès 62126576fc
gnu: hdf5: Build the C++ interface. 
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
 2016-11-24 21:43:47 +01:00
Petter daf72603eb
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>. 
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-21 14:39:54 -05:00
Efraim Flashner f5a077b10f
gnu: octave: Update to 4.2.0. 
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
 2016-11-15 15:21:15 +02:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Paul Garlick 1c79e0861a
gnu: gmsh: Update to 2.14.1 
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-11-10 18:57:57 +02:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Kei Kebreau ccbc575824
gnu: maxima: Update to 5.38.1. 
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
 2016-11-03 16:14:05 -04:00
Leo Famulari 062c7e43ed
Merge branch 'master' into core-updates 2016-10-29 21:44:44 -04:00
Eric Bavier fba78d18c2
gnu: mumps: Upgrade to 5.0.2. 
* gnu/packages/maths.scm (mumps): Upgrade to 5.0.2.
[arguments]: Properly return boolean from install phase.
 2016-10-28 15:53:32 -05:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 7397cd9e3f
gnu: armadillo: Update to 7.500.0. 
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
 2016-10-26 16:23:25 +02:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries. 
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-25 14:56:37 +02:00
Thomas Danckaert d91025e3d0
gnu: Add coda. 
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2. 
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:05:20 +02:00
Mark H Weaver d2478b4cdd
Merge branch 'master' into core-updates 2016-10-19 10:54:36 -04:00
Andreas Enge 15ca49b220
gnu: hdf4: Really fix non-x86 architectures. 
This is a follow-up to commit 60da9fb110.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
 2016-10-18 21:15:43 +02:00
Mark H Weaver 061d7f3bd2
Merge branch 'master' into core-updates 2016-10-13 05:53:07 -04:00
Thomas Danckaert becbbefc9b
gnu: Add hdf4 
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-12 23:35:43 +02:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
Thomas Danckaert 0f43f8354c
gnu: Add hdf-eos5. 
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-06 18:14:45 +02:00
Leo Famulari b19c7989b7
Merge branch 'master' into core-updates 2016-10-05 19:15:25 -04:00
Leo Famulari 517318adf0
gnu: Add Vc. 
* gnu/packages/maths.scm (vc): New variable.
 2016-10-05 12:49:41 -04:00
Ludovic Courtès ab2cc5cde1
gnu: gsl: Disable failing tests on i686. 
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
 2016-10-05 15:11:08 +02:00
Ludovic Courtès 8c82e1c9d3
gnu: gsl: Update to 2.2.1. 
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
 2016-10-04 16:37:59 +02:00
Ludovic Courtès 0f7cd95b81
gnu: gctp: 'license' field now has a <license> value. 
* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
 2016-10-03 23:20:23 +02:00