908a2ee0ed
gnu: Add ocaml-bisect-ppx.
...
* gnu/packages/ocaml.scm (ocaml-bisect-ppx): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-05-14 21:37:57 +02:00
e2506afcaf
gnu: Add ocaml-tyxml.
...
* gnu/packages/ocaml.scm (ocaml-tyxml): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-05-14 21:36:34 +02:00
38089b549f
gnu: Add ocaml-markup.
...
* gnu/packages/ocaml.scm (ocaml-markup): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-05-14 21:33:48 +02:00
6b4a6c201a
gnu: python-requests-oauthlib: Fix building.
...
* gnu/packages/python-web.scm (python-requests-oauthlib)[native-inputs]:
Add python-pyjwt for tests.
2019-05-14 21:20:19 +02:00
7bd30ea988
gnu: certbot, python-acme: Update to 0.34.2.
...
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.34.2.
2019-05-14 15:06:29 -04:00
3617d4f913
gnu: ocaml-base64: Update to 3.2.0.
...
* gnu/packages/ocaml.scm (ocaml-base64): Update to 3.2.0.
[origin]: Use git-fetch.
(ocaml-piqilib)[origin]: Add a patch to fix building with new
versions of ocaml-base64.
* gnu/packages/patches/ocaml-piqilib-Update-base64.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-05-14 21:05:32 +02:00
9f5a3ba659
gnu: ocaml-tsdl: Update to 0.9.6.
...
* gnu/packages/ocaml.scm (ocaml-tsdl): Update to 0.9.6.
2019-05-14 21:05:21 +02:00
70a5701141
gnu: ocaml-ocb-stubblr: Fix build failures using it.
...
* gnu/packages/ocaml.scm (ocaml-ocb-stubblr)[arguments]: Add a phase to
fix guix-specific issues.
2019-05-14 21:05:14 +02:00
fbf786bd1d
gnu: ocaml-sqlite3: Update to 4.4.1.
...
* gnu/packages/ocaml.scm (ocaml-sqlite3): Update to 4.4.1.
[origin]: Use git-fetch.
2019-05-14 21:04:47 +02:00
3cf62cd6cb
gnu: dune: Update to 1.9.3.
...
* gnu/packages/ocaml.scm (dune): Update to 1.9.3.
2019-05-14 21:04:30 +02:00
52cb7748cb
gnu: curl: Remove unused input.
...
* gnu/packages/curl.scm (curl)[inputs]: Remove LIBSSH2-1.8.0.
* gnu/packages/ssh.scm (libssh2-1.8.0): Remove variable.
2019-05-14 20:08:36 +02:00
828d3765a7
gnu: curl: Build against MIT Kerberos instead of GSS.
...
* gnu/packages/curl.scm (curl)[inputs]: Change from GSS to MIT-KRB5.
[arguments]: Adjust accordingly.
2019-05-14 20:07:01 +02:00
fd6983d10f
gnu: gsasl: Use the MIT Kerberos implementation instead of GSS.
...
* gnu/packages/gsasl.scm (gsasl)[inputs]: Change from GSS to MIT-KRB5.
[arguments]: New field.
2019-05-14 20:07:01 +02:00
44323e63a3
gnu: Add ataqv.
...
* gnu/packages/bioinformatics.scm (ataqv): New variable.
2019-05-14 16:15:19 +02:00
46ca002d1c
gnu: burp: Update to 2.3.6.
...
* gnu/packages/backup.scm (burp): Update to 2.3.6.
2019-05-14 14:19:19 +02:00
91a403a457
gnu: anthy: Update source URI.
...
* gnu/packages/anthy (anthy)[source]: Update URI.
2019-05-14 14:00:55 +02:00
53923b0fb1
gnu: jnettop: Use archived source and homepage.
...
* gnu/packages/admin.scm (jnettop)[source,home-page]:
Use archive.org mirror.
2019-05-14 14:00:55 +02:00
5395cec2c5
gnu: xdot: Update to 1.1.
...
* gnu/packages/graphviz.scm (xdot): Update to 1.1.
2019-05-14 14:00:54 +02:00
1731b29742
gnu: font-hermit: Download as 'url-fetch/tarbomb'.
...
* gnu/packages/fonts.scm (font-hermit)[source]: Use 'url-fetch/tarbomb'
method.
[arguments]: Remove custom phases.
2019-05-14 14:47:44 +03:00
dcc3d4030f
gnu: Add emacs-evil-cleverparens
...
* gnu/packages/emacs-xyz.scm (emacs-evil-cleverparens): New
variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-14 12:11:05 +02:00
50867421f9
gnu: Add font-hermit
...
* gnu/packages/fonts.scm (font-hermit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-14 12:11:04 +02:00
8d080506f4
gnu: munge: Pass '--localstatedir=/var'.
...
Previously, Munge users such as Slurm would fail with:
squeue: error: Munge encode failed: Failed to access "/gnu/store/…-munge-0.5.13/var/run/munge/munge.socket.2": No such file or directory
squeue: error: authentication: Socket communication error
* gnu/packages/admin.scm (munge)[source](modules, snippet): New fields.
[arguments]: New field.
2019-05-14 12:11:04 +02:00
3ea420f337
gnu: hdf5: Add dependency on Perl.
...
* gnu/packages/maths.scm (hdf5)[native-inputs]: Add PERL.
2019-05-14 12:11:04 +02:00
549d15712f
gnu: hdf5: Build a thread-safe library.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Pass "--enable-threadsafe
--with-pthread --enable-unsupported".
2019-05-14 12:11:04 +02:00
ae5de93ae2
gnu: uncrustify: Update to 0.69.0.
...
* gnu/packages/code.scm (uncrustify): Update to 0.69.0.
2019-05-14 11:47:08 +02:00
112fd34fee
gnu: cqfd: Update to 5.1.0.
...
* gnu/packages/docker.scm (cqfd): Update to 5.1.0.
[description]: Fix typo.
2019-05-13 21:50:34 -04:00
1bba3e8ca8
gnu: Add harmonist.
...
gnu/packages/games.scm (harmonist): New variable.
2019-05-13 23:20:00 +02:00
7c1c42c4b6
gnu: go-github.com-nsf-termbox-go: Update to 0.0.0-1.288510b.
...
* gnu/packages/terminals.scm (go-github.com-nsf-termbox-go): Update to
0.0.0-1.288510b.
2019-05-13 23:19:56 +02:00
993d8164e4
gnu: exiv2: Use HTTPS URLs.
...
* gnu/packages/image.scm (exiv2)[source, home-page]: Use HTTPS.
2019-05-13 14:16:48 +02:00
2508b07517
gnu: gpscorrelate: Update home page.
...
* gnu/packages/gps.scm (gpscorrelate)[source, home-page]: Update for new
maintainer, as noted on <https://github.com/freefoote/gpscorrelate >.
2019-05-13 14:16:48 +02:00
1015099d50
gnu: hugin: Update to 2019.0.0.
...
* gnu/packages/photo.scm (hugin): Update to 2019.0.0.
2019-05-13 14:16:48 +02:00
563ecba5cf
gnu: ImageMagick: Update to 6.9.10-45.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-45.
2019-05-13 14:14:42 +02:00
9dc6ff5a85
gnu: python-packaging: Update to 19.0.
...
* gnu/packages/python-xyz.scm (python-packaging): Update to 19.0.
2019-05-13 14:14:42 +02:00
4cd4173d5b
gnu: python-pygments: Update to 2.4.0.
...
* gnu/packages/python-xyz.scm (python-pygments): Update to 2.4.0.
2019-05-13 14:14:42 +02:00
4a5c79346a
gnu: python-jinja2: Update to 2.10.1.
...
* gnu/packages/python-xyz.scm (python-jinja2): Update to 2.10.1.
2019-05-13 14:14:42 +02:00
0ace73f142
gnu: ALSA: Update to 1.1.9.
...
* gnu/packages/linux.scm (alsa-lib, alsa-utils, alsa-plugins): Update to 1.1.9.
* gnu/packages/pulseaudio.scm (pulseaudio)[arguments]: Add phase to adjust
ALSA header file name.
2019-05-13 14:14:41 +02:00
954b3c8b65
gnu: libinput: Update to 1.13.2.
...
* gnu/packages/freedesktop.scm (libinput): Update to 1.13.2.
2019-05-13 14:14:41 +02:00
04a3ecc79e
gnu: Remove 'gcc-glibc-2.27' and 'gcc-glibc-2.26'.
...
These top-level references to GCC could cause problems, such as:
$ guix build -e '(@ (gnu packages gcc) gcc)' -n
guix build: error: failed to evaluate expression '(@ (gnu packages gcc) gcc)':
In procedure module-lookup: Unbound variable: gcc
Regression introduced in 3ed497d42a
2019-05-13 11:36:11 +02:00
a8e7ba7536
gnu: gdb: Add version 8.3.
...
* gnu/packages/gdb.scm (gdb): Rename to...
(gdb-8.2): ... this.
(gdb-8.3): New variable.
(gdb): Define as an alias for GDB-8.2.
2019-05-13 10:12:14 +02:00
3ed497d42a
gnu: Allow building gcc with non-default libc.
...
* gnu/packages/base.scm (make-gcc-libc): New procedure, returns a gcc
that targets a specified libc.
(gcc-glibc-2.26, gcc-glibc-2.27): New public variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-13 09:46:58 +02:00
102d307520
gnu: cross-base: Allow using non-default glibc.
...
* gnu/packages/cross-base.scm (cross-libc, native-libc, cross-newlib?):
Add 'libc' optional argument to specify using a non-default glibc
package.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-13 09:46:58 +02:00
d815728525
gnu: emacs-slack: Update to 0.0.2-6.10fbb81.
...
* gnu/packages/emacs-xyz.scm (emacs-slack): Update to 0.0.2-6.10fbb81.
[arguments]: Set HOME before compiling source files.
2019-05-13 09:10:41 +02:00
a624c36310
gnu: gajim: Fix error when GAJIM_PLUGIN_PATH is not set.
...
Fixes <https://bug.gnu.org/35606 >
* gnu/packages/messaging.scm (gajim)[arguments]: Handle case when
GAJIM_PLUGIN_PATH is unset in add-plugins-dir phase.
2019-05-13 09:03:03 +02:00
9562790d51
gnu: mesa: Update to 19.0.4.
...
* gnu/packages/gl.scm (mesa): Update to 19.0.4.
2019-05-13 08:29:37 +02:00
70d23edf93
gnu: openjdk11: Suppress internal in version.
...
* gnu/packages/java.scm (openjdk11)[configure-flags]: Add --with-version-pre= .
2019-05-13 08:12:26 +02:00
a430a3501a
gnu: gdm: Fix configuration file discovery.
...
The configuration file loading code moved to a new file in version 2.28.
* gnu/package/gnome.scm (gdm)[arguments]: Change the pre-configure phase
to patch configuration file discovery into the 'gdm-settings.c' file.
2019-05-12 20:01:35 -04:00
395c142ed9
gnu: python-requests-oauthlib: Update to 1.2.0.
...
* gnu/packages/python-web.scm (python-requests-oauthlib): Update to 1.2.0.
2019-05-13 00:17:37 +02:00
c8a7cc69c9
gnu: python-oauthlib: Update to 3.0.1.
...
* gnu/packages/python-web.scm (python-oauthlib): Update to 3.0.1.
[arguments]: Replace check phase with pytest invokation.
[native-inputs]: Remove PYTHON-NOSE. Add PYTHON-PYTEST and PYTHON-PYTEST-COV.
[properties]: Remove.
(python2-oauthlib)[native-inputs]: Remove PYTHON2-UNITTEST2.
2019-05-13 00:17:37 +02:00
e7c67f1b69
gnu: python-oauthlib: Propagate required inputs.
...
* gnu/packages/python-web.scm (python-oauthlib)[native-inputs]: Move
PYTHON-CRYPTOGRAPHY, PYTHON-PYJWT, and PYTHON-BLINKER ...
[propagated-inputs]: ... here.
2019-05-13 00:17:37 +02:00
5f7e3ac066
gnu: python-oauthlib: Update home page.
...
* gnu/packages/python-web.scm (python-oauthlib)[home-page]: Follow redirect to
<https://github.com/oauthlib/oauthlib >.
2019-05-13 00:17:37 +02:00
f94051e61f
gnu: python-mysqlclient: Don't depend on MySQL.
...
* gnu/packages/databases.scm (python-mysqlclient)[native-inputs]: Move MARIADB
from here to ...
[inputs]: ... here. Remove MYSQL.
2019-05-13 00:17:37 +02:00
9c6fb330ad
gnu: perl-dbd-mysql: Depend on MariaDB rather than MySQL.
...
* gnu/packages/databases.scm (perl-dbd-mysql)[propagated-inputs]: Change from
MYSQL to MARIADB.
2019-05-13 00:17:37 +02:00
d5d5403033
gnu: python-future: Update to 0.17.1.
...
* gnu/packages/python-xyz.scm (python-future): Update to 0.17.1.
2019-05-13 00:17:37 +02:00
0447a2a82b
gnu: postgresql@9: Update to 9.6.13 [fixes CVE-2019-10129, CVE-2019-10130].
...
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.13.
2019-05-13 00:17:37 +02:00
6ced4433c7
gnu: speech-dispatcher: Update to 0.9.1.
...
* gnu/packages/speech.scm (speech-dispatcher): Update to 0.9.1.
[arguments]: Add "--with-ibmtts=no" to #:configure-flags.
[license]: Remove GPL2.
2019-05-13 00:17:37 +02:00
62f6f3bb04
gnu: Add emacs-ediprolog.
...
* gnu/packages/emacs-xyz.scm (emacs-ediprolog): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-12 23:52:17 +02:00
59199e1adb
gnu: icedtea-7: Disable os version check.
...
* gnu/packages/java.scm (icedtea-7)[arguments]:
Add phase 'disable-os-version-check.
2019-05-12 09:19:11 +02:00
0bc11cc745
gnu: icedtea-6: Disable os version check.
...
* gnu/packages/java.scm (icedtea-6)[arguments]:
Add phase 'disable-os-version-check.
2019-05-12 09:19:03 +02:00
152030ffdf
gnu: linux-libre: Update to 5.1.1.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.1.
(%linux-libre-hash): Update hash.
2019-05-11 20:13:18 -04:00
22e40d0911
gnu: linux-libre@4.19: Update to 4.19.42.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.42.
(%linux-libre-4.19-hash): Update hash.
2019-05-11 20:12:23 -04:00
877747ebe1
gnu: linux-libre@4.14: Update to 4.14.118.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.118.
(%linux-libre-4.14-hash): Update hash.
2019-05-11 20:11:32 -04:00
2157c1210e
gnu: linux-libre@4.9: Update to 4.9.175.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.175.
2019-05-11 20:10:28 -04:00
2ce144eebb
gnu: acpica: Update to 20190509.
...
* gnu/packages/admin.scm (acpica): Update to 20190509.
2019-05-11 23:35:34 +02:00
980808075c
gnu: xtensor: Update to 0.20.5.
...
* gnu/packages/algebra.scm (xtensor): Update to 0.20.5.
2019-05-11 23:35:34 +02:00
0b69897bda
gnu: xtl: Update to 0.6.4.
...
* gnu/packages/cpp.scm (xtl): Update to 0.6.4.
2019-05-11 23:35:33 +02:00
7d9fa5f376
gnu: picard: Read disc IDs.
...
* gnu/packages/music.scm (picard)[inputs]: Add python-discid.
2019-05-11 23:35:33 +02:00
e28b0798d2
gnu: picard: Don't check for updates.
...
* gnu/packages/music.scm (picard)[arguments]: Add ‘--disable-autoupdate’
to #:configure-flags.
2019-05-11 23:35:33 +02:00
8eba82753a
gnu: iproute2: Update to 5.1.0.
...
* gnu/packages/linux.scm (iproute2): Update to 5.1.0.
2019-05-11 23:35:33 +02:00
cc4e5e1330
gnu: gegl: Update to 0.4.16.
...
* gnu/packages/gimp.scm (gegl): Update to 0.4.16.
2019-05-11 23:35:33 +02:00
d09a8dffdd
gnu: electrum: Update to 3.3.5.
...
* gnu/packages/finance.scm (electrum): Update to 3.3.5.
2019-05-11 23:35:33 +02:00
0691567d78
gnu: libkomparediff2: Update to 19.04.1.
...
* gnu/packages/kde.scm (libkomparediff2): Update to 19.04.1.
2019-05-11 23:35:33 +02:00
40b5ec2f3e
gnu: libkomparediff2: Don't use NAME in source URI.
...
* gnu/packages/kde.scm (libkomparediff2)[source]: Hard-code NAME.
2019-05-11 23:35:33 +02:00
819488fb95
gnu: libkomparediff2: Fix source file name.
...
* gnu/packages/kde.scm (libkomparediff2)[source]: Remove (incorrect)
FILE-NAME.
2019-05-11 23:35:32 +02:00
ef81faeec0
gnu: nethack: Update to 3.6.2.
...
* gnu/packages/games.scm (nethack): Update to 3.6.2.
2019-05-11 23:35:32 +02:00
6bf795329a
gnu: denemo: Use older version of gtksourceview.
...
* gnu/packages/music.scm (denemo)[inputs]: Replace gtksourceview with
gtksourceview-3.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>.
2019-05-11 21:33:19 +02:00
3a228f7a0a
gnu: Add emacs-dired-rsync.
...
* gnu/packages/emacs-xyz.scm (emacs-dired-rsync): New variable.
2019-05-11 21:22:35 +03:00
3b8699f9c2
gnu: shepherd: Update to 0.6.1.
...
* gnu/packages/admin.scm (shepherd): Update to 0.6.1.
2019-05-11 20:10:26 +02:00
e247244e00
gnu: picard: Return #t from phases.
...
* gnu/packages/music.scm (picard)[arguments]: Return #t from
‘patch-source’ phase.
2019-05-11 19:55:39 +02:00
251448f7f5
gnu: picard: Use build system features.
...
* gnu/packages/music.scm (picard)[arguments]: Leverage #:use-setuptools?
and #:configure-flags instead of a custom ‘install’ phase.
2019-05-11 19:55:39 +02:00
b421e91558
gnu: picard: Update to 2.1.3.
...
* gnu/packages/music.scm (picard): Update to 2.1.3.
2019-05-11 19:55:39 +02:00
e174699534
gnu: libshout: Update to 2.4.2.
...
* gnu/packages/xiph.scm (libshout): Update to 2.4.2.
2019-05-11 19:55:39 +02:00
7824fbf8c5
gnu: libshout: Don't use NAME in source URI.
...
* gnu/packages/xiph.scm (libshout)[source]: Hard-code NAME.
2019-05-11 19:55:39 +02:00
4088d809c0
gnu: upower: Update to 0.99.10.
...
* gnu/packages/gnome.scm (upower): Update to 0.99.10.
* gnu/packages/patches/upower-builddir.patch: Adapt.
2019-05-11 19:55:39 +02:00
90d37addbe
gnu: powwow: Update to 1.2.19.
...
* gnu/packages/games.scm (powwow): Update to 1.2.19.
2019-05-11 19:55:38 +02:00
93ce003741
gnu: wesnoth: Update to 1.14.7.
...
* gnu/packages/games.scm (wesnoth): Update to 1.14.7.
2019-05-11 19:55:38 +02:00
9cf65f051c
gnu: chroma: Update to 1.17.
...
* gnu/packages/games.scm (chroma): Update to 1.17.
2019-05-11 19:55:38 +02:00
6cc9533eb1
gnu: qbittorrent: Update to 4.1.6.
...
* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.1.6.
2019-05-11 19:55:38 +02:00
4ac7112748
gnu: man-db: Update to 2.8.5.
...
* gnu/packages/man.scm (man-db): Update to 2.8.5.
[arguments]: Add systemd unit directory to #:configure-flags.
2019-05-11 19:55:38 +02:00
c087a90e06
gnu: wine-staging: Update to 4.8.
...
* gnu/packages/wine.scm (wine-staging,wine-staging-patchset-data):
Update to 4.8.
2019-05-11 17:06:14 +02:00
6dedf0aeb2
gnu: emacs-use-package: Update to 2.4.
...
* gnu/packages/emacs-xyz.scm (emacs-use-package): Update to 2.4.
2019-05-11 17:06:53 +05:30
59e72ac8f5
gnu: Add emacs-rotate-text.
...
* gnu/packages/emacs-xyz.scm (emacs-rotate-text): New variable.
2019-05-11 14:06:13 +03:00
21ec924868
gnu: r-hdf5array: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.1.
2019-05-11 12:05:35 +02:00
2521bb1d7d
gnu: r-sfsmisc: Update to 1.1-4.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-4.
2019-05-11 12:05:34 +02:00
bc4e1114f3
gnu: r-dt: Update to 0.6.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.6.
2019-05-11 12:05:34 +02:00
9d38b15b2e
gnu: r-rversions: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-rversions): Update to 2.0.0.
2019-05-11 12:05:34 +02:00
ae9ed1390f
gnu: r-quadprog: Update to 1.5-7.
...
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-7.
2019-05-11 12:05:34 +02:00
4238c3ee2a
gnu: r-styler: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-styler): Update to 1.1.1.
2019-05-11 12:05:34 +02:00
080c706225
gnu: r-bookdown: Update to 0.10.
...
* gnu/packages/cran.scm (r-bookdown): Update to 0.10.
2019-05-11 12:05:34 +02:00
53dbf3a2ac
gnu: r-future: Update to 1.13.0.
...
* gnu/packages/cran.scm (r-future): Update to 1.13.0.
2019-05-11 12:05:34 +02:00
407a04fa03
gnu: r-grimport2: Update to 0.1-5.
...
* gnu/packages/cran.scm (r-grimport2): Update to 0.1-5.
2019-05-11 12:05:33 +02:00
a75c6d9c63
gnu: r-rcmdcheck: Update to 1.3.3.
...
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.3.
2019-05-11 12:05:33 +02:00
c02f574d38
gnu: r-fs: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-fs): Update to 1.3.1.
2019-05-11 12:05:33 +02:00
86ad5dbc62
gnu: r-parsedate: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-parsedate): Update to 1.2.0.
[propagated-inputs]: Add r-rematch2.
2019-05-11 12:05:33 +02:00
4d970db846
gnu: r-processx: Update to 3.3.1.
...
* gnu/packages/cran.scm (r-processx): Update to 3.3.1.
2019-05-11 12:05:33 +02:00
00399a780b
gnu: r-ggrepel: Update to 0.8.1.
...
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.1.
2019-05-11 12:05:33 +02:00
7a67bca198
gnu: r-dimred: Update to 0.2.3.
...
* gnu/packages/cran.scm (r-dimred): Update to 0.2.3.
2019-05-11 12:05:33 +02:00
d1d6e13eb6
gnu: r-regioner: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.1.
2019-05-11 12:05:32 +02:00
41e09a159a
gnu: osc: Update to 0.165.0.
...
* gnu/packages/build-tools.scm (osc): Update to 0.165.0.
[source]: Use git-fetch.
[arguments]: Use python3. osc_hotshot.py is gone. So, do not attempt to delete
it. Rename fix-filename-and-remove-unused phase to fix-filename phase.
[inputs]: Add rpm. Remove python2-urlgrabber. Replace python2-m2crypto and
python2-pycurl with python-m2crypto and python-pycurl.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-11 14:08:52 +05:30
c0023514a3
gnu: rpm: Update to 4.14.2.1.
...
* gnu/packages/package-management.scm (rpm): Update to 4.14.2.1.
[inputs]: Use python instead of python-2.
[home-page]: Use HTTPS URI.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-11 14:08:51 +05:30
c3ebaec531
gnu: neovim: Update to 0.3.5.
...
* gnu/packages/vim.scm (neovim): Update to 0.3.5.
[source]: Use git-fetch.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-11 12:56:13 +05:30
755a6027ce
gnu: Go 1.11: Update to 1.11.10.
...
* gnu/packages/golang.scm (go-1.11): Update to 1.11.10.
2019-05-10 13:30:07 -04:00
7a9158f83e
gnu: emacs-auctex: Update to 12.1.2.
...
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 12.1.2.
2019-05-10 19:23:37 +02:00
de1206dc5f
gnu: emacs-debbugs: Update to 0.18.
...
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.18.
2019-05-10 19:20:18 +02:00
d13f3a033e
gnu: gnome-tweak-tool: Update to 3.28.1.
...
Fixes <https://bugs.gnu.org/35597 >.
* gnu/packages/gnome.scm (gnome-tweak-tool): Deprecate and rename...
(gnome-tweaks): ...to this. Update to 3.28.1.
[build-system]: Use meson-build-system.
[arguments]: Adjust configure flags; pass glib-or-gtk? flag; remove custom
phases that are now provided by the meson-build-system; add phases "wrap" and
"wrap-gi-typelib".
[native-inputs]: Remove meson-for-build and ninja.
[home-page]: Update.
[description]: Use "Tweaks" instead of "Tweak Tool".
* gnu/packages/patches/gnome-tweak-tool-search-paths.patch: Rename file...
* gnu/packages/patches/gnome-tweaks-search-paths.patch: ...to this.
* gnu/local.mk (dist_patch_DATA): Update patch file name.
2019-05-10 13:31:32 +02:00
496b024fde
gnu: Add r-rqc.
...
* gnu/packages/bioconductor.scm (r-rqc): New variable.
2019-05-10 13:31:03 +02:00
5e0241db84
gnu: Add r-quasr.
...
* gnu/packages/bioconductor.scm (r-quasr): New variable.
2019-05-10 13:31:03 +02:00
5865606459
gnu: Add r-rhisat2.
...
* gnu/packages/bioconductor.scm (r-rhisat2): New variable.
2019-05-10 13:31:03 +02:00
1444153913
gnu: Add r-sgseq.
...
* gnu/packages/bioconductor.scm (r-sgseq): New variable.
2019-05-10 13:31:03 +02:00
30f1029f4c
gnu: Add r-xgboost.
...
* gnu/packages/cran.scm (r-xgboost): New variable.
2019-05-10 13:31:03 +02:00
29591ca611
gnu: Add r-citr.
...
* gnu/packages/cran.scm (r-citr): New variable.
2019-05-10 13:31:02 +02:00
afc4370d4c
gnu: Add r-refmanager.
...
* gnu/packages/cran.scm (r-refmanager): New variable.
2019-05-10 13:31:02 +02:00
85625cae66
gnu: Add r-ggfortify.
...
* gnu/packages/cran.scm (r-ggfortify): New variable.
2019-05-10 13:31:02 +02:00
c9487dfadc
gnu: Add r-plot3d.
...
* gnu/packages/cran.scm (r-plot3d): New variable.
2019-05-10 13:31:02 +02:00
70debac5f1
gnu: Add r-enrichr.
...
* gnu/packages/cran.scm (r-enrichr): New variable.
2019-05-10 13:31:02 +02:00
5bea832f72
gnu: Add r-dalex.
...
* gnu/packages/cran.scm (r-dalex): New variable.
2019-05-10 13:31:02 +02:00
4d06ef4b71
gnu: Add r-rbowtie.
...
* gnu/packages/bioconductor.scm (r-rbowtie): New variable.
2019-05-10 13:31:02 +02:00
8c42f8f6e8
gnu: Add r-iclusterplus.
...
* gnu/packages/bioconductor.scm (r-iclusterplus): New variable.
2019-05-10 13:31:01 +02:00
b40a36baff
gnu: linux-libre: Update to 5.1.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.
(%linux-libre-hash): Update hash.
(%linux-libre-5.0-patches): Rename to ...
(%linux-libre-5.1-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-veyron)
(linux-libre-arm-omap2plus): Use %linux-libre-5.1-patches.
(vhba-module): Move definition below the kernel packages.
* gnu/packages/aux-files/linux-libre/5.0-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.1-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.1-arm.conf,
gnu/packages/aux-files/linux-libre/5.1-arm64.conf,
gnu/packages/aux-files/linux-libre/5.1-i686.conf,
gnu/packages/aux-files/linux-libre/5.1-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2019-05-10 00:00:49 -04:00
3d8033af42
gnu: rust: Update to 1.34.1.
...
* gnu/packages/rust.scm (rust): Update to 1.34.1.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:09 +02:00
4ed20d3cfe
gnu: rust: Make source derivations smaller.
...
* gnu/packages/rust.scm (rust-source-pre-1.32): Delete procedure.
(rust-bootstrapped-package-pre-1.32): Delete procedure.
(rust-bootstrapped-package): Remove optional keys, and return an origin.
(rust-uri): New variable.
(mrustc): Change native-input "rust" to use source of rust-1.19.
(rust-1.19)[source]: Define package source.
(rust-1.20): Use rust-bootstrapped-package.
(rust-1.21): Likewise.
(rust-1.22): Likewise.
(rust-1.23): Likewise.
(rust-1.24): Likewise.
(rust-1.25): Likewise.
(rust-1.26): Likewise.
(rust-1.27): Likewise.
(rust-1.28): Likewise.
(rust-1.29): Likewise.
(rust-1.30): Likewise.
(rust-1.31): Likewise.
(rust-1.32): Likewise.
(rust-1.33): Likewise.
(rust-1.34): Likewise.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:09 +02:00
bea01c0d2b
gnu: rust: Delete install logs and manifests.
...
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[delete-install-logs]:
New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:08 +02:00
e88735b45f
build/cargo-utils: Remove "src-name" parameter.
...
* gnu/packages/gnuzilla.scm (icecat)[arguments]<#:phases>
[patch-cargo-checksums]: Delete "null-file" variable.
* gnu/packages/rust.scm (%cargo-reference-project-file): Delete variable.
* gnu/packages/rust.scm (rust-1.19): Remove reference to
"%cargo-reference-project-file".
* guix/build/cargo-utils.scm (generate-checksums): Remove "src-name"
parameter.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:08 +02:00
d78010b81e
gnu: gcc-4.7: Hide package.
...
* gnu/packages/gcc.scm (gcc-4.7): Wrap in "hidden-package" expression.
2019-05-09 23:18:39 +02:00
935568d5ce
gnu: emacs-dash: Update to 2.16.0.
...
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.16.0.
2019-05-09 22:51:33 +02:00
b97b4624d0
gnu: Add guile-file-names.
...
* gnu/packages/guile-xyz.scm (guile-file-names): New variable.
2019-05-09 22:41:14 +02:00
ae623b3f9d
gnu: seabios: Update to 1.12.1.
...
This is a stable release despite the missing tarball.
<https://mail.coreboot.org/hyperkitty/list/seabios@seabios.org/thread/ONGRJVF3A45SAXOKBED52V2UD3YUWTRT/ >
* gnu/packages/firmware.scm (seabios): Update to 1.12.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-05-09 21:16:54 +02:00
05de4c346d
gnu: man-pages: Update to 5.01.
...
* gnu/packages/man.scm (man-pages): Update to 5.01.
2019-05-09 21:16:53 +02:00
34dce89a0c
gnu: emacs-sml-mode: Update to 6.9.
...
* gnu/packages/emacs-xyz.scm (emacs-sml-mode): Update to 6.9.
2019-05-09 21:16:53 +02:00
b03a4ed465
gnu: cdemu-client: Update to 3.2.1.
...
* gnu/packages/cdrom.scm (cdemu-client): Update to 3.2.1.
2019-05-09 21:13:29 +02:00
97dbf75a56
gnu: cdemu-daemon: Update to 3.2.2.
...
* gnu/packages/cdrom.scm (cdemu-daemon): Update to 3.2.2.
2019-05-09 21:13:28 +02:00
d201571754
gnu: libmirage: Update to 3.2.2.
...
* gnu/packages/cdrom.scm (libmirage): Update to 3.2.2.
2019-05-09 21:13:28 +02:00
819b3b8201
gnu: vhba-module: Update to 20190410.
...
* gnu/packages/linux.scm (vhba-module): Update to 20190410.
2019-05-09 21:13:28 +02:00
38878020b0
gnu: cloc: Update to 1.82.
...
* gnu/packages/code.scm (cloc): Update to 1.82.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-05-09 21:13:28 +02:00
18160c3408
gnu: Use mirror://kernel.org in source URIs.
...
* gnu/packages/linux.scm (bridge-utils, cpufrequtils, sbc)[source](uri): Use
"mirror://kernel.org" instead of www.kernel.org directly.
2019-05-09 14:06:07 +02:00
aeb1ed1abc
gnu: wpa_supplicant: Update to 2.8 [security fixes].
...
This release fixes CVE-2019-9494, CVE-2019-9495, CVE-2019-9496, CVE-2019-9497,
CVE-2019-9498, CVE-2019-9499, and CVE-2019-11555.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.8.
[source](snippet): New field. Disable D-Bus.
[arguments]: Change CONFIG_TLS to use OpenSSL rather than GnuTLS. This is
required by many of the new default build-time settings.
[inputs]: Remove GNUTLS and LIBGCRYPT. Add OPENSSL.
(wpa-supplicant)[arguments]: Remove obsolete CONFIG_CTRL_IFACE_DBUS=y.
2019-05-09 13:43:03 +02:00
3fde051bfd
gnu: libtorrent-rasterbar: Update to 1.1.13.
...
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.13.
2019-05-09 13:43:03 +02:00
3a32be71eb
gnu: leveldb: Update to 1.22.
...
* gnu/packages/databases.scm (leveldb): Update to 1.22.
2019-05-09 13:43:03 +02:00
4506018e28
gnu: Mercurial: Update to 5.0
...
* gnu/packages/version-control.scm (mercurial): Update to 5.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-09 12:11:37 +02:00
56038bac60
gnu: Add hostapd.
...
* gnu/packages/admin.scm (hostapd): New variable.
2019-05-09 12:11:36 +02:00
063edf928a
gnu: Add python-pylibmc.
...
* gnu/packages/databases.scm (python-pylibmc, python2-pylibmc): New variables.
2019-05-09 00:22:38 -04:00
da6026792b
gnu: Add libmemcached.
...
* gnu/packages/databases.scm (libmemcached): New variable.
2019-05-09 00:22:37 -04:00
c526b3176f
gnu: linux-libre: Update to 5.0.14.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.14.
(%linux-libre-hash): Update hash.
2019-05-08 22:51:27 -04:00
013130cf0b
gnu: linux-libre@4.19: Update to 4.19.41.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.41.
(%linux-libre-4.19-hash): Update hash.
2019-05-08 22:19:29 -04:00
f9ab5c47bd
gnu: linux-libre@4.14: Update to 4.14.117.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.117.
(%linux-libre-4.14-hash): Update hash.
2019-05-08 22:18:13 -04:00
9902e3dfd8
gnu: linux-libre@4.9: Update to 4.9.174.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.174.
2019-05-08 22:17:31 -04:00
429a38a009
gnu: usbutils: Add ‘python’ output.
...
* gnu/packages/linux.scm (usbutils)[outputs]: Add ‘python’.
[arguments]: Add ‘separate-python-output’ phase.
2019-05-09 01:14:55 +02:00
a6592732cf
gnu: usbutils: Fix broken lsusb.py.
...
* gnu/packages/linux.scm (usbutils)[inputs]: Add python.
2019-05-09 01:14:55 +02:00
5b26635893
gnu: usbutils: Update to 012.
...
* gnu/packages/linux.scm (usbutils): Update to 012.
[arguments]: Add ‘patch-bootstrap-scripts’ phase.
[native-inputs]: Add autoconf, automake, and libtool.
2019-05-09 01:14:55 +02:00
6346dca4bb
gnu: mariadb: Update to 10.1.40.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.40.
2019-05-08 23:32:54 +02:00
dc80b28d4b
gnu: Valgrind: Remove version 3.14.0.
...
* gnu/packages/valgrind.scm (valgrind): Update to 3.15.0.
(valgrind-3.15): Remove variable.
2019-05-08 23:32:54 +02:00
8d1644a1f5
gnu: libgsf: Update to 1.14.46.
...
* gnu/packages/gnome.scm (libgsf): Update to 1.14.46.
2019-05-08 23:32:54 +02:00
26fad5b7df
gnu: mbpfan: Update to 2.1.1.
...
* gnu/packages/linux.scm (mbpfan): Update to 2.1.1.
2019-05-08 23:21:34 +02:00
b786ae69aa
gnu: dovecot: Update to 2.3.6.
...
* gnu/packages/mail.scm (dovecot): Update to 2.3.6.
2019-05-08 23:21:34 +02:00
05ee17872c
gnu: mpop: Update to 1.4.4.
...
* gnu/packages/mail.scm (mpop): Update to 1.4.4.
2019-05-08 23:21:34 +02:00
3f45c6cfcb
gnu: gmime: Update to 3.2.3.
...
* gnu/packages/mail.scm (gmime): Update to 3.2.3.
2019-05-08 23:21:34 +02:00
9f53d58ae1
gnu: opari2: Use HTTPS home page.
...
* gnu/packages/profiling.scm (opari2)[home-page]: Use HTTPS.
2019-05-08 23:21:34 +02:00
2cea4ac780
gnu: opari2: Update to 2.0.4.
...
* gnu/packages/profiling.scm (opari2): Update to 2.0.4.
2019-05-08 23:21:34 +02:00
d21649440b
gnu: fasm: Update to 1.73.11.
...
* gnu/packages/assembly.scm (fasm): Update to 1.73.11.
2019-05-08 23:21:34 +02:00
5c89429586
gnu: Syncthing: Update to 1.1.2.
...
* gnu/packages/syncthing.scm (syncthing): Update to 1.1.2.
2019-05-08 14:57:11 -04:00
e54a6543a0
gnu: python-efl: Update to 1.22.0.
...
* gnu/packages/enlightenment.scm (python-efl): Update to 1.22.0.
[source]: Use https. Add snippet to remove files generated by cython.
2019-05-08 19:55:13 +03:00
944bdb2afe
gnu: terminology: Update build.
...
* gnu/packages/enlightenment.scm (terminology)[arguments]: Add to
configure-flags. Add custom 'set-home-directory phase.
2019-05-08 19:55:13 +03:00
3ec29587b5
gnu: efl: Update to 1.22.2.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.22.2.
[propagated-inputs]: Move libsndfile, pulseaudio ...
[inputs]: ... to here.
[source]: Remove patch.
* gnu/packages/patches/efl-mesa-compat.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-05-08 19:55:12 +03:00
515a92cf20
gnu: liburcu: Update to 0.11.0.
...
* gnu/packages/datastructures.scm (liburcu): Update to 0.11.0.
2019-05-08 16:41:55 +02:00
1a6482d43c
gnu: Add copyright header.
...
* gnu/packages/fonts.scm: Add copyright header.
2019-05-08 15:20:08 +02:00
4b360985eb
gnu: Add font-sil-andika.
...
* gnu/packages/fonts.scm (font-sil-andika): New variable.
2019-05-08 15:18:55 +02:00
aa986c9cd6
gnu: retroarch: Update to 1.7.7.
...
* gnu/packages/emulators.scm (retroarch): Update to 1.7.7.
2019-05-08 08:15:46 +02:00
56aee1968f
gnu: emacs-irfc: Update to 20130824.507-1.
...
This commits changes package's source hash, because 'irfc.el' file was
modified. New file contains HTTPS instead of HTTP URLs.
* gnu/packages/emacs-xyz.scm (emacs-irfc): Update to 20130824.507-1.
2019-05-08 02:06:51 +03:00
5d51a9771d
gnu: tlp: Update to 1.2.2.
...
* gnu/packages/linux.scm (tlp): Update to 1.2.2.
2019-05-07 23:41:00 +02:00
338defe0cb
gnu: sbcl-next: Update to 1.2.1.
...
* gnu/packages/web-browsers.scm (sbcl-next): Update to 1.2.1.
2019-05-07 19:18:37 +02:00
cbbdc5c795
gnu: next-gtk-webkit: Update to 1.2.1.
...
* gnu/packages/web-browsers.scm (next-gtk-webkit): Update to 1.2.1.
2019-05-07 19:18:28 +02:00
6426a8fb6c
gnu: slim: Allow customisation of Xorg display.
...
Previously SLiM could only start on display :0.0. This change makes it
possible to run multiple instances of SLiM at the same time.
* gnu/packages/patches/slim-display.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim): Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-07 15:46:54 +02:00
341225ac6c
gnu: gnome-control-center: Patch file name of 'nm-connection-editor'.
...
* gnu/packages/gnome.scm (gnome-control-center)[argument]: In
'patch-paths' phase, provide absolute file name to
'nm-connection-editor' in panels/network/*.c
2019-05-07 15:46:53 +02:00
1df38cfcc7
gnu: gnome-control-center: Patch file name of 'gkbd-keyboard-display'.
...
Fixes <https://bugs.gnu.org/35605 >.
Reported by sirgazil <sirgazil@zoho.com>.
* gnu/packages/gnome.scm (gnome-control-center)[arguments]: In
'patch-paths' phase, patch "cc-region-panel.cc" and provide it with the
absolute file name of 'gkbd-keyboard-display'.
2019-05-07 15:46:53 +02:00
bdd30bf00b
gnu: Add sbcl-find-port, cl-find-port, and ecl-find-port.
...
* gnu/packages/lisp.scm (sbcl-find-port, cl-find-port, ecl-find-port): New
variables.
2019-05-07 12:43:31 +02:00
08c06cd8ac
gnu: grammalecte: Update to 1.0.2.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.0.2.
2019-05-07 10:25:19 +02:00
239baad9c4
gnu: vulkan-headers: Update to 1.1.107.
...
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.107.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
2019-05-07 08:38:16 +02:00
d9ef50b3bc
gnu: tegola: Fix build.
...
* gnu/packages/geo.scm (tegola)[arguments]: Adapt the "unpack-path" for the new
unpack phase.
* gnu/packages/geo.scm (tegola)[phases]{set-version}: Update the directory path.
{rename-import}: Remove phase.
2019-05-06 23:10:36 -04:00
bdc0c20cab
gnu: imposm3: Fix build.
...
* gnu/packages/geo.scm (imposm3)[arguments]: Adapt unpack-path for the new
unpack phase.
[phases]: Remove the "rename-import" phase, now obsolete.
2019-05-06 23:05:05 -04:00
fb09818277
gnu: restic: Fix build.
...
This fixes a regression introduced by commit f42e4ebb56
2019-05-06 22:36:43 -04:00
d879fd80c7
gnu: syncthing: Fix build.
...
* gnu/packages/syncthing.scm (syncthing)[arguments]: Drop the unpack-path
argument, made unnecessary by commit f42e4ebb56
2019-05-06 20:50:36 -04:00
3bb293b6f3
gnu: mate-power-manager: License is GPLv2+.
...
Reported by Guy fleury <hoonandon@gmail.com>.
* gnu/packages/mate.scm (mate-power-manager): Change to GPL2+.
2019-05-06 23:21:32 +02:00
d6a68e9048
gnu: emacs-evil-nerd-commenter: Update to 3.3.7.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.3.7.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-06 16:56:39 +02:00
869eb264ac
gnu: emacs-elfeed: Update to 3.1.0.
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* gnu/packages/emacs-xyz.scm (emacs-elfeed): Update to 3.1.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-06 16:56:13 +02:00
e77787ca91
gnu: emacs-hl-todo: Update to 3.0.0.
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* gnu/packages/emacs-xyz.scm (emacs-hl-todo): Update to 3.0.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-06 16:55:32 +02:00
46ce12d0a3
gnu: icecat: Move the snippet and patches out of the 'source'.
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This commit changes the 'source' field of the 'icecat' package to
simply be 'icecat-source', which aims to be suitable for use on any
system that IceCat supports.
* gnu/packages/gnuzilla.scm (icecat)[source]: Change to simply
be 'icecat-source'.
[native-inputs]: Add 'patch', along with the Guix-specific patches
that were previously applied within 'source'.
[arguments]: Remove the 'ensure-no-mtimes-pre-1980' phase.
Add 'apply-guix-specific-patches' and 'remove-bundled-libraries'
phases. Touch 'configure' in the bootstrap phase. Return #t from
the 'augment-CPLUS_INCLUDE_PATH' phase. Reindent.
2019-05-06 10:33:20 -04:00
3e605b6998
gnu: icecat-source: Make sure 'makeicecat' is the right version.
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* gnu/packages/gnuzilla.scm (icecat-source): Check to make sure the
value of FFMAJOR in the 'makeicecat' script matches the major version
of IceCat being generated.
2019-05-06 10:33:18 -04:00
ebff346945
gnu: icecat: Update to 60.6.2-guix1.
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* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.2-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
2019-05-06 10:33:12 -04:00
1c404e6c1a
gnu: r-gridgraphics: Update to 0.4-0.
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* gnu/packages/cran.scm (r-gridgraphics): Update to 0.4-0.
2019-05-06 16:11:45 +02:00
639334a962
gnu: r-checkmate: Update to 1.9.3.
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* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.3.
2019-05-06 16:11:33 +02:00
93f8a00964
gnu: r-rgadem: Update to 2.32.0.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.32.0.
2019-05-06 16:11:17 +02:00
c5296e205b
gnu: llvm: Update to 8.0.0.
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* gnu/packages/llvm.scm (llvm): Update to 8.0.0.
* gnu/packages/llvm.scm (clang-runtime): Update hash.
* gnu/packages/llvm.scm (clang): Update hash.
2019-05-06 13:29:12 +02:00
94249db825
gnu: python2-terminado: Add missing input.
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* gnu/packages/python-web.scm (python2-terminado)[propagated-inputs]: Add
python2-futures.
2019-05-06 12:57:10 +02:00
fc7d632829
gnu: Add emacs-miniedit.
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* gnu/packages/emacs-xyz.scm (emacs-miniedit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 11:17:23 +02:00
cc1d1fc8b7
gnu: Add emacs-sudo-edit.
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* gnu/packages/emacs-xyz.scm (emacs-sudo-edit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 11:15:31 +02:00
d2ca86f308
gnu: Add emacs-docker-compose-mode.
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* gnu/packages/emacs-xyz.scm (emacs-docker-compose-mode): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 11:14:47 +02:00
a02198133a
gnu: Add emacs-elisp-demos.
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* gnu/packages/emacs-xyz.scm (emacs-elisp-demos): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 11:14:10 +02:00
0209661ee6
gnu: Add emacs-flycheck-flow.
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* gnu/packages/emacs-xyz.scm (emacs-flycheck-flow): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 11:10:21 +02:00
df7d0dce4b
gnu: Add emacs-evil-textobj-syntax.
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* gnu/packages/emacs-xyz.scm (emacs-evil-textobj-syntax): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 11:09:10 +02:00
a08530df08
gnu: Add emacs-names.
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* gnu/packages/emacs-xyz.scm (emacs-names): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 11:08:34 +02:00
5e319c15c1
gnu: mate-power-manager: Placate 'guix lint'.
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Reported by guy fleury iteriteka <hoonandon@gmail.com>.
* gnu/packages/mate.scm (mate-power-manager)[source]: Use mirror:// URL.
[synopsis, description]: Adjust to placate 'guix lint'.
2019-05-06 11:06:37 +02:00
623d4b4662
gnu: Add git-annex-remote-rclone.
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* gnu/packages/version-control.scm (git-annex-remote-rclone): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:43:45 +02:00
5d6bab9e00
gnu: quickswitch-i3: Fix license field to use license:wtfpl2.
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* gnu/packages/wm.scm (quickswitch-i3): Fix license field to use
license:wtfpl2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:32:28 +02:00
6f38ef73a5
gnu: tmux-themepack: Fix license field to refer to license:wtfpl2.
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* gnu/packages/tmux.scm (tmux-themepack): Fix license field to refer to
license:wtfpl2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:32:28 +02:00
41ee377305
gnu: Use license: prefix in tmux.scm.
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* gnu/packages/tmux.scm Use license: prefix in tmux.scm.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:32:28 +02:00
492e3a7a76
gnu: python-pyyaml: Fix license field to refer to license:wtfpl2.
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* gnu/packages/python-xyz.scm (python-pyyaml): Fix license field to refer to
license:wtfpl2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:32:27 +02:00
ac44b39a19
gnu: envstore: Fix license field to refer to license:wtfpl2.
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* gnu/packages/shellutils.scm (envstore): Fix license field to refer to
license:wtfpl2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:32:27 +02:00
e3e8924d23
gnu: Use license: prefix in shellutils.scm.
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* gnu/packages/shellutils.scm Use license: prefix in all packages.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:32:27 +02:00
f62e7ce442
gnu: zimg: Fix license field to refer to license:wtfpl2.
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* gnu/packages/image.scm (zimg): Fix license field to refer to license:wtfpl2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:32:21 +02:00
0e293f75f1
gnu: gcc@9: Fix limits.h include for cross builds.
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This allows us to supply gcc-9 as an optional argument to cross-gcc,
successfully constructing gcc-9-based cross-compilers.
* gnu/packages/gcc.scm (gcc-9)[source](patches): Add
"gcc-9-asan-fix-limits-include.patch".
* gnu/packages/patches/gcc-9-asan-fix-limits-include.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:22:00 +02:00
83b0a7f41b
gnu: cross-base: Apply gcc 8 patch to gcc >= 8.
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* gnu/packages/cross-base.scm (cross-gcc): Apply gcc 8 patch to gcc >= 8.
* gnu/packages/patches/gcc-8-cross-environment-variables.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:21:38 +02:00
bdfc327639
gnu: gcc: Add 9.1.0.
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* gnu/packages/gcc.scm (gcc-9): New variable.
* gnu/packages/commencement.scm (gcc-toolchain-9): New variable.
* gnu/packages/patches/gcc-9-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-06 10:18:15 +02:00
654332f00f
gnu: linux-libre: Update to 5.0.13.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.13.
(%linux-libre-hash): Update hash.
2019-05-06 02:13:19 -04:00
90f4cc4bc7
gnu: linux-libre@4.19: Update to 4.19.40.
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* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.40.
(%linux-libre-4.19-hash): Update hash.
2019-05-06 02:12:31 -04:00
d40684e827
gnu: linux-libre@4.14: Update to 4.14.116.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.116.
(%linux-libre-4.14-hash): Update hash.
2019-05-06 02:11:37 -04:00
60065f5bd3
gnu: linux-libre@4.9: Update to 4.9.173.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.173.
2019-05-06 02:10:51 -04:00
59781b32d8
gnu: docker: Refer to xz by its absolute path.
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* gnu/packages/docker.scm (docker)[inputs]: Add xz.
[phases]{patch-paths}: Patch the reference to xz.
2019-05-05 21:21:02 -04:00
80fec17f39
gnu: docker: Patch the reference to the docker proxy.
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* gnu/packages/docker.scm (docker)[inputs]: Add docker-libnetwork-cmd-proxy.
* gnu/packages/docker.scm (docker)[phases]{patch-paths}: Patch proxy.go to
refer to the docker-proxy binary by its absolute path.
2019-05-05 21:21:02 -04:00
a01d54f3bd
gnu: docker: Optimize substitution macros.
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This change halves the time needed to patch the paths.
* gnu/packages/docker.scm (docker)[phases]{patch-paths}: Allow passing
multiple SOURCE-TEXT, PACKAGE and RELATIVE-PATH tuples so that the rewrite
rules can be generated and processed by a single use of the SUBSTITUTE*
macro. Rename SUBSTITUTE-LOOKPATH to SUBSTITUTE-LOOKPATH* and
substitute-Command to SUBSTITUTE-COMMAND* to denote the change. Adapt the
uses of SUBSTITUTE-LOOKPATH* and SUBSTITUTE-COMMAND*.
2019-05-05 21:21:02 -04:00
079f0eb3d2
gnu: docker: Make macros use a relative path as argument.
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* gnu/packages/docker.scm (docker)[phases]: Move implementation detail inside
the SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND macros definition, so that the
relative path argument can be given as a relative path.
2019-05-05 21:21:01 -04:00
3f280d3950
gnu: docker: Harmonize LookPath regexes.
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* gnu/packages/docker.scm (docker)[phases]: In the patch-paths phase, update
the regexes used by SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND to match at the
start of the word, like it's done later.
2019-05-05 21:21:01 -04:00
1b14e1bccd
gnu: docker: Cleanup extraneous comments.
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* gnu/packages/docker.scm (docker): Remove "parenthesis-balancing" comments.
2019-05-05 21:21:01 -04:00
c627932639
gnu: docker: Fix indentation.
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* gnu/packages/docker.scm (docker): Fix indentation using Emacs.
2019-05-05 21:20:58 -04:00
0b94911add
gnu: Add docker-libnetwork-cmd-proxy.
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* gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): New variable.
2019-05-05 20:14:15 -04:00
9c0244abbd
gnu: Add docker-libnetwork.
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* gnu/packages/docker.scm (docker-libnetwork): New private variable.
2019-05-05 20:14:15 -04:00
626de0d13a
gnu: Add go-netlink.
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* gnu/packages/linux.scm (go-netlink): New variable.
2019-05-05 20:14:15 -04:00
03981f9064
gnu: Add go-netns.
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* gnu/packages/networking.scm (go-netns): New variable.
2019-05-05 20:14:14 -04:00
523533ed09
gnu: Add go-sctp.
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* gnu/packages/networking.scm (go-sctp): New variable.
2019-05-05 20:14:14 -04:00
85c1d20fa6
gnu: r-chippeakanno: Update to 3.18.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0.
[propagated-inputs]: Add r-rtracklayer.
2019-05-06 00:14:59 +02:00
c24adbbf07
gnu: r-arrmnormalization: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.24.0.
2019-05-06 00:14:59 +02:00
c2bfb978bf
gnu: r-progeny: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.6.0.
2019-05-06 00:14:59 +02:00
7d33d36c52
gnu: r-rbowtie2: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.6.0.
2019-05-06 00:14:58 +02:00
02530c2821
gnu: r-zfpkm: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.6.0.
2019-05-06 00:14:58 +02:00
67bc9255d5
gnu: r-webbioc: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.56.0.
2019-05-06 00:14:58 +02:00
c881b9ef3a
gnu: r-widgettools: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.62.0.
2019-05-06 00:14:58 +02:00
a6edf33533
gnu: r-wiggleplotr: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.8.0.
2019-05-06 00:14:58 +02:00
07597c85d8
gnu: r-wrench: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-wrench): Update to 1.2.0.
2019-05-06 00:14:58 +02:00
298f7f112f
gnu: r-xcms: Update to 3.6.0.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.0.
2019-05-06 00:14:58 +02:00
7c888138ef
gnu: r-massspecwavelet: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.50.0.
2019-05-06 00:14:58 +02:00
88469def75
gnu: r-xbseq: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.16.0.
2019-05-06 00:14:57 +02:00
0334b203d7
gnu: r-roar: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-roar): Update to 1.20.0.
2019-05-06 00:14:57 +02:00
7f4957b24e
gnu: r-yarn: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yarn): Update to 1.10.0.
2019-05-06 00:14:57 +02:00
2feea2d22a
gnu: r-quantro: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-quantro): Update to 1.18.0.
2019-05-06 00:14:57 +02:00
f48e29daa3
gnu: r-yaqcaffy: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.44.0.
2019-05-06 00:14:57 +02:00
38c5d13a73
gnu: r-simpleaffy: Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.60.0.
2019-05-06 00:14:57 +02:00
56576bea97
gnu: r-gcrma: Update to 2.56.0.
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* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.56.0.
2019-05-06 00:14:57 +02:00
edba69b2ff
gnu: r-yapsa: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.10.0.
2019-05-06 00:14:57 +02:00
3cdc5d1a7b
gnu: r-somaticsignatures: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.20.0.
2019-05-06 00:14:56 +02:00
128c6d59f0
gnu: r-gtrellis: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.0.
2019-05-06 00:14:56 +02:00
1269a926c0
gnu: r-yamss: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0.
2019-05-06 00:14:56 +02:00
2a6d838337
gnu: r-ebimage: Update to 4.26.0.
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* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0.
2019-05-06 00:14:56 +02:00
b68a9e80f4
gnu: r-aucell: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.0.
2019-05-06 00:14:56 +02:00
9da2021f49
gnu: r-allelicimbalance: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.22.0.
2019-05-06 00:14:56 +02:00
ee1a45d719
gnu: r-annotationtools: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.58.0.
2019-05-06 00:14:56 +02:00
69a2ec5447
gnu: r-annotationfuncs: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.34.0.
2019-05-06 00:14:56 +02:00
e2e1dea2bb
gnu: r-abaenrichment: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.0.
2019-05-06 00:14:55 +02:00
bab06a6ff3
gnu: r-gofuncr: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.4.0.
2019-05-06 00:14:55 +02:00
bcc233c1a6
gnu: r-atacseqqc: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.0.
[propagated-inputs]: Add r-edger.
2019-05-06 00:14:55 +02:00
19ee76379c
gnu: r-genomicscores: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.0.
2019-05-06 00:14:55 +02:00
aa0ebfd2eb
gnu: r-motifstack: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.28.0.
[propagated-inputs]: Replace r-grimport with r-grimport2.
2019-05-06 00:14:55 +02:00
f7a495b159
gnu: r-motiv: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.40.0.
2019-05-06 00:14:55 +02:00
a5860ebe87
gnu: r-rgadem: Update to 2.31.0.
...
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.31.0.
2019-05-06 00:14:54 +02:00
e33c25ff2c
gnu: r-bacon: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.12.0.
2019-05-06 00:14:54 +02:00
b7ddf0f048
gnu: r-abseqr: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.2.0.
2019-05-06 00:14:54 +02:00
1aadddeaa9
gnu: r-a4: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
ae1730ae1a
gnu: r-a4base: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
e5a36543ac
gnu: r-a4reporting: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
0b6091621f
gnu: r-a4preproc: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
82de77da5a
gnu: r-a4classif: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.32.0.
2019-05-06 00:14:53 +02:00
b077e3db2a
gnu: r-a4core: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.32.0.
2019-05-06 00:14:53 +02:00
8bef9df4d4
gnu: r-annaffy: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.56.0.
2019-05-06 00:14:53 +02:00
8265a1115e
gnu: r-mlinterfaces: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.0.
2019-05-06 00:14:53 +02:00
1a3e33be23
gnu: r-clusterprofiler: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.12.0.
2019-05-06 00:14:53 +02:00
77d28d665c
gnu: r-enrichplot: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.4.0.
2019-05-06 00:14:53 +02:00
1990ff9d10
gnu: r-dose: Update to 3.10.0.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.0.
2019-05-06 00:14:53 +02:00
ebffd24c10
gnu: r-fgsea: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.10.0.
[propagated-inputs]: Add r-bh.
2019-05-06 00:14:53 +02:00
3e5ee6f69f
gnu: r-sigpathway: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.52.0.
2019-05-06 00:14:53 +02:00
0a41b5db95
gnu: r-anota: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-anota): Update to 1.32.0.
2019-05-06 00:14:52 +02:00
24cf7bad99
gnu: r-gosemsim: Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.10.0.
2019-05-06 00:14:52 +02:00
376d1fe759
gnu: r-heatplus: Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.30.0.
2019-05-06 00:14:52 +02:00
c2effdedc0
gnu: r-varianttools: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.26.0.
2019-05-06 00:14:52 +02:00
bc083ecab8
gnu: r-triform: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-triform): Update to 1.26.0.
2019-05-06 00:14:52 +02:00
2ee91179d1
gnu: r-ioniser: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.8.0.
2019-05-06 00:14:52 +02:00
48c2a7eb39
gnu: r-linnorm: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.8.0.
2019-05-06 00:14:52 +02:00
5551b07cde
gnu: r-lumi: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-lumi): Update to 2.36.0.
2019-05-06 00:14:51 +02:00
2986b51ffe
gnu: r-methylumi: Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.30.0.
2019-05-06 00:14:51 +02:00
8c0fae3cd4
gnu: r-minfi: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-minfi): Update to 1.30.0.
2019-05-06 00:14:51 +02:00
693a98056c
gnu: r-bumphunter: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.26.0.
2019-05-06 00:14:51 +02:00
409f4dd652
gnu: r-siggenes: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.58.0.
[propagated-inputs]: Add r-scrime.
2019-05-06 00:14:51 +02:00
fadc6db82d
gnu: r-illuminaio: Update to 0.26.0.
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* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.26.0.
2019-05-06 00:14:51 +02:00
2d4430877a
gnu: r-geoquery: Update to 2.52.0.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.52.0.
2019-05-06 00:14:51 +02:00
26c72fffc1
gnu: r-scone: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-scone): Update to 1.8.0.
2019-05-06 00:14:50 +02:00
7baa59ed4d
gnu: r-scdd: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-scdd): Update to 1.8.0.
2019-05-06 00:14:50 +02:00
6a2c58b7e0
gnu: r-noiseq: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.28.0.
2019-05-06 00:14:50 +02:00
78b6326785
gnu: r-monocle: Update to 2.12.0.
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* gnu/packages/bioconductor.scm (r-monocle): Update to 2.12.0.
2019-05-06 00:14:50 +02:00
a0ff725d6a
gnu: r-mast: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-mast): Update to 1.10.0.
[propagated-inputs]: Add r-blme.
2019-05-06 00:14:50 +02:00
3fd2ea8883
gnu: r-icobra: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.0.
2019-05-06 00:14:50 +02:00
bcd8b7a9bd
gnu: r-ihw: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-ihw): Update to 1.12.0.
2019-05-06 00:14:50 +02:00
61c79d55e3
gnu: r-lpsymphony: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.12.0.
2019-05-06 00:14:49 +02:00
4a3c47e940
gnu: r-ebseq: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.24.0.
2019-05-06 00:14:49 +02:00
301c4ff12a
gnu: r-deds: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-deds): Update to 1.58.0.
2019-05-06 00:14:49 +02:00
d5f3c0d09e
gnu: r-dnacopy: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.58.0.
2019-05-06 00:14:49 +02:00
d941918599
gnu: r-copynumber: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.24.0.
2019-05-06 00:14:49 +02:00
58a43fc28e
gnu: r-chipexoqual: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.8.0.
2019-05-06 00:14:49 +02:00
8d3d0c3abe
gnu: r-savr: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-savr): Update to 1.22.0.
2019-05-06 00:14:49 +02:00
0aa72f2d1e
gnu: r-destiny: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-destiny): Update to 2.14.0.
[propagated-inputs]: Remove r-fnn and r-hmisc; add r-ggplot2.
2019-05-06 00:14:48 +02:00
6fc161fc3e
gnu: r-biocneighbors: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.2.0.
[propagated-inputs]: Add r-biocgenerics and r-rcpphnsw.
2019-05-06 00:14:48 +02:00
d8771f5fd6
gnu: r-ruvseq: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.18.0.
2019-05-06 00:14:48 +02:00
774e499cec
gnu: r-dnabarcodes: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.14.0.
2019-05-06 00:14:48 +02:00
3649d046a6
gnu: r-inspect: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.14.0.
2019-05-06 00:14:48 +02:00
5dce71535f
gnu: r-plgem: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-plgem): Update to 1.56.0.
2019-05-06 00:14:48 +02:00
5bf7eb49f6
gnu: r-rots: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.12.0.
2019-05-06 00:14:48 +02:00
07252952b7
gnu: r-glimma: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-glimma): Update to 1.12.0.
2019-05-06 00:14:47 +02:00
40f0ee43a0
gnu: r-goseq: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-goseq): Update to 1.36.0.
2019-05-06 00:14:47 +02:00
7a5d729af1
gnu: r-ctc: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-ctc): Update to 1.58.0.
2019-05-06 00:14:47 +02:00
1236ce8e22
gnu: r-genomicinteractions: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.0.
2019-05-06 00:14:47 +02:00
176a264c7c
gnu: r-interactionset: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.12.0.
2019-05-06 00:14:47 +02:00
eff6b2eb12
gnu: r-riboseqr: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.18.0.
2019-05-06 00:14:47 +02:00
7d5acf7a25
gnu: r-riboprofiling: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.14.0.
2019-05-06 00:14:47 +02:00
1ddd4af5a0
gnu: r-chipcomp: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.14.0.
2019-05-06 00:14:47 +02:00
c38de81594
gnu: r-bayseq: Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.18.0.
2019-05-06 00:14:46 +02:00
4f4bed7de5
gnu: r-qdnaseq: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.20.0.
2019-05-06 00:14:46 +02:00
2317730994
gnu: r-cghcall: Update to 2.46.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.46.0.
2019-05-06 00:14:46 +02:00
8efb842f11
gnu: r-cghbase: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.44.0.
2019-05-06 00:14:46 +02:00
bcb95b7aac
gnu: r-marray: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.62.0.
2019-05-06 00:14:46 +02:00
a61bcb28f7
gnu: r-graph: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.62.0.
2019-05-06 00:14:46 +02:00
588b63c2af
gnu: r-multtest: Update to 2.40.0.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.40.0.
2019-05-06 00:14:45 +02:00
0968a44874
gnu: r-ripseeker: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.24.0.
2019-05-06 00:14:45 +02:00
4c221b3bbf
gnu: r-diffbind: Update to 2.12.0.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.12.0.
[propagated-inputs]: Add r-rhtslib; remove r-zlibbioc.
2019-05-06 00:14:45 +02:00
e02162f7ba
gnu: r-qvalue: Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.16.0.
2019-05-06 00:14:45 +02:00
3e1bc88c1f
gnu: r-geneplotter: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.62.0.
2019-05-06 00:14:45 +02:00
4b53d55e98
gnu: r-regioner: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.0.
2019-05-06 00:14:45 +02:00
43a23a0733
gnu: r-hpar: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-hpar): Update to 1.26.0.
2019-05-06 00:14:44 +02:00
0c53332a27
gnu: r-annotate: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-annotate): Update to 1.62.0.
2019-05-06 00:14:44 +02:00
81a1c45df5
gnu: r-biocgenerics: Update to 0.30.0.
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* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.30.0.
2019-05-06 00:14:44 +02:00
3addf736d5
gnu: r-systempiper: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
2019-05-06 00:14:44 +02:00
9bcbca135b
gnu: r-rsamtools: Update to 2.0.0.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.0.
[propagated-inputs]: Add r-rhtslib.
2019-05-06 00:14:44 +02:00
82d9340b0c
gnu: r-impute: Update to 1.58.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.58.0.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2019-05-06 00:14:44 +02:00
2b4ac1d77e
gnu: r-rcas: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.0.
[propagated-inputs]: Add ghc-pandoc.
2019-05-06 00:14:43 +02:00
8322c860f9
gnu: r-methylkit: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.10.0.
[propagated-inputs]: Add r-mgcv.
2019-05-06 00:14:43 +02:00
b173dbe617
gnu: r-annotationhub: Update to 2.16.0.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.0.
[propagated-inputs]: Add r-biocfilecache, r-dplyr, and r-rappdirs.
2019-05-06 00:14:43 +02:00
gabrielhdt