409f4dd652
gnu: r-siggenes: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.58.0.
[propagated-inputs]: Add r-scrime.
2019-05-06 00:14:51 +02:00
fadc6db82d
gnu: r-illuminaio: Update to 0.26.0.
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* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.26.0.
2019-05-06 00:14:51 +02:00
2d4430877a
gnu: r-geoquery: Update to 2.52.0.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.52.0.
2019-05-06 00:14:51 +02:00
26c72fffc1
gnu: r-scone: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-scone): Update to 1.8.0.
2019-05-06 00:14:50 +02:00
7baa59ed4d
gnu: r-scdd: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-scdd): Update to 1.8.0.
2019-05-06 00:14:50 +02:00
6a2c58b7e0
gnu: r-noiseq: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.28.0.
2019-05-06 00:14:50 +02:00
78b6326785
gnu: r-monocle: Update to 2.12.0.
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* gnu/packages/bioconductor.scm (r-monocle): Update to 2.12.0.
2019-05-06 00:14:50 +02:00
a0ff725d6a
gnu: r-mast: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-mast): Update to 1.10.0.
[propagated-inputs]: Add r-blme.
2019-05-06 00:14:50 +02:00
3fd2ea8883
gnu: r-icobra: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.0.
2019-05-06 00:14:50 +02:00
bcd8b7a9bd
gnu: r-ihw: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-ihw): Update to 1.12.0.
2019-05-06 00:14:50 +02:00
61c79d55e3
gnu: r-lpsymphony: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.12.0.
2019-05-06 00:14:49 +02:00
4a3c47e940
gnu: r-ebseq: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.24.0.
2019-05-06 00:14:49 +02:00
301c4ff12a
gnu: r-deds: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-deds): Update to 1.58.0.
2019-05-06 00:14:49 +02:00
d5f3c0d09e
gnu: r-dnacopy: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.58.0.
2019-05-06 00:14:49 +02:00
d941918599
gnu: r-copynumber: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.24.0.
2019-05-06 00:14:49 +02:00
58a43fc28e
gnu: r-chipexoqual: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.8.0.
2019-05-06 00:14:49 +02:00
8d3d0c3abe
gnu: r-savr: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-savr): Update to 1.22.0.
2019-05-06 00:14:49 +02:00
0aa72f2d1e
gnu: r-destiny: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-destiny): Update to 2.14.0.
[propagated-inputs]: Remove r-fnn and r-hmisc; add r-ggplot2.
2019-05-06 00:14:48 +02:00
6fc161fc3e
gnu: r-biocneighbors: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.2.0.
[propagated-inputs]: Add r-biocgenerics and r-rcpphnsw.
2019-05-06 00:14:48 +02:00
d8771f5fd6
gnu: r-ruvseq: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.18.0.
2019-05-06 00:14:48 +02:00
774e499cec
gnu: r-dnabarcodes: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.14.0.
2019-05-06 00:14:48 +02:00
3649d046a6
gnu: r-inspect: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.14.0.
2019-05-06 00:14:48 +02:00
5dce71535f
gnu: r-plgem: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-plgem): Update to 1.56.0.
2019-05-06 00:14:48 +02:00
5bf7eb49f6
gnu: r-rots: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.12.0.
2019-05-06 00:14:48 +02:00
07252952b7
gnu: r-glimma: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-glimma): Update to 1.12.0.
2019-05-06 00:14:47 +02:00
40f0ee43a0
gnu: r-goseq: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-goseq): Update to 1.36.0.
2019-05-06 00:14:47 +02:00
7a5d729af1
gnu: r-ctc: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-ctc): Update to 1.58.0.
2019-05-06 00:14:47 +02:00
1236ce8e22
gnu: r-genomicinteractions: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.0.
2019-05-06 00:14:47 +02:00
176a264c7c
gnu: r-interactionset: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.12.0.
2019-05-06 00:14:47 +02:00
eff6b2eb12
gnu: r-riboseqr: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.18.0.
2019-05-06 00:14:47 +02:00
7d5acf7a25
gnu: r-riboprofiling: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.14.0.
2019-05-06 00:14:47 +02:00
1ddd4af5a0
gnu: r-chipcomp: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.14.0.
2019-05-06 00:14:47 +02:00
c38de81594
gnu: r-bayseq: Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.18.0.
2019-05-06 00:14:46 +02:00
4f4bed7de5
gnu: r-qdnaseq: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.20.0.
2019-05-06 00:14:46 +02:00
2317730994
gnu: r-cghcall: Update to 2.46.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.46.0.
2019-05-06 00:14:46 +02:00
8efb842f11
gnu: r-cghbase: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.44.0.
2019-05-06 00:14:46 +02:00
bcb95b7aac
gnu: r-marray: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.62.0.
2019-05-06 00:14:46 +02:00
a61bcb28f7
gnu: r-graph: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.62.0.
2019-05-06 00:14:46 +02:00
588b63c2af
gnu: r-multtest: Update to 2.40.0.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.40.0.
2019-05-06 00:14:45 +02:00
0968a44874
gnu: r-ripseeker: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.24.0.
2019-05-06 00:14:45 +02:00
4c221b3bbf
gnu: r-diffbind: Update to 2.12.0.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.12.0.
[propagated-inputs]: Add r-rhtslib; remove r-zlibbioc.
2019-05-06 00:14:45 +02:00
e02162f7ba
gnu: r-qvalue: Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.16.0.
2019-05-06 00:14:45 +02:00
3e1bc88c1f
gnu: r-geneplotter: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.62.0.
2019-05-06 00:14:45 +02:00
4b53d55e98
gnu: r-regioner: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.0.
2019-05-06 00:14:45 +02:00
43a23a0733
gnu: r-hpar: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-hpar): Update to 1.26.0.
2019-05-06 00:14:44 +02:00
0c53332a27
gnu: r-annotate: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-annotate): Update to 1.62.0.
2019-05-06 00:14:44 +02:00
81a1c45df5
gnu: r-biocgenerics: Update to 0.30.0.
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* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.30.0.
2019-05-06 00:14:44 +02:00
3addf736d5
gnu: r-systempiper: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
2019-05-06 00:14:44 +02:00
9bcbca135b
gnu: r-rsamtools: Update to 2.0.0.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.0.
[propagated-inputs]: Add r-rhtslib.
2019-05-06 00:14:44 +02:00
82d9340b0c
gnu: r-impute: Update to 1.58.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.58.0.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2019-05-06 00:14:44 +02:00
2b4ac1d77e
gnu: r-rcas: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.0.
[propagated-inputs]: Add ghc-pandoc.
2019-05-06 00:14:43 +02:00
8322c860f9
gnu: r-methylkit: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.10.0.
[propagated-inputs]: Add r-mgcv.
2019-05-06 00:14:43 +02:00
b173dbe617
gnu: r-annotationhub: Update to 2.16.0.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.0.
[propagated-inputs]: Add r-biocfilecache, r-dplyr, and r-rappdirs.
2019-05-06 00:14:43 +02:00
a8abc8dd3a
gnu: r-fastseg: Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.30.0.
2019-05-06 00:14:43 +02:00
e699e8e599
gnu: r-keggrest: Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.0.
2019-05-06 00:14:43 +02:00
c798455d87
gnu: r-gage: Update to 2.34.0.
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* gnu/packages/bioinformatics.scm (r-gage): Update to 2.34.0.
2019-05-06 00:14:43 +02:00
d4ef1d59cc
gnu: r-genomicfiles: Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.20.0.
2019-05-06 00:14:43 +02:00
70a3e4499d
gnu: r-complexheatmap: Update to 2.0.0.
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* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.0.0.
[propagated-inputs]: Add r-clue and r-png.
2019-05-06 00:14:43 +02:00
e2cb23404c
gnu: r-dirichletmultinomial: Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.26.0.
2019-05-06 00:14:42 +02:00
0af6efa3c5
gnu: r-ensembldb: Update to 2.8.0.
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* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.0.
2019-05-06 00:14:42 +02:00
96f98c5b72
gnu: r-organismdbi: Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.26.0.
2019-05-06 00:14:42 +02:00
a98c3b4ae4
gnu: r-biovizbase: Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.32.0.
2019-05-06 00:14:42 +02:00
d38fbacad1
gnu: r-ggbio: Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.32.0.
2019-05-06 00:14:42 +02:00
623be1a443
gnu: r-gqtlbase: Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.16.0.
2019-05-06 00:14:42 +02:00
ed7de45655
gnu: r-snpstats: Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.34.0.
2019-05-06 00:14:42 +02:00
3c5f5b4154
gnu: r-erma: Update to 1.0.0.
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* gnu/packages/bioinformatics.scm (r-erma): Update to 1.0.0.
2019-05-06 00:14:41 +02:00
89ba9a7226
gnu: r-ldblock: Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.0.
2019-05-06 00:14:41 +02:00
a349d57a46
gnu: r-gqtlstats: Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.16.0.
2019-05-06 00:14:41 +02:00
105d9e2cb4
gnu: r-gviz: Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.0.
2019-05-06 00:14:41 +02:00
1b454f9f69
gnu: r-gwascat: Update to 2.16.0.
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* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0.
[propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2, r-gqtlstats,
r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and r-variantannotation.
2019-05-06 00:14:41 +02:00
256609eb46
gnu: r-sushi: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.22.0.
2019-05-06 00:14:41 +02:00
7705165882
gnu: r-fithic: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.10.0.
2019-05-06 00:14:40 +02:00
e998a26e1d
gnu: r-hitc: Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.28.0.
2019-05-06 00:14:40 +02:00
65925573be
gnu: r-hdf5array: Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
2019-05-06 00:14:40 +02:00
d5625b3a9e
gnu: r-rhdf5lib: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.0.
2019-05-06 00:14:40 +02:00
583b4fd6e3
gnu: r-beachmat: Update to 2.0.0.
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* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.0.0.
[inputs]: Remove hdf5 and zlib.
[propagated-inputs]: Rmeove r-hdf5array, r-rcpp, r-rhdf5, and r-rhdf5lib.
2019-05-06 00:14:40 +02:00
029cefdd90
gnu: r-singlecellexperiment: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.6.0.
2019-05-06 00:14:40 +02:00
70d04dc183
gnu: r-scater: Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.0.
[propagated-inputs]: Add r-biocneighbors and r-biocsingular; remove r-plyr,
r-reshape2, and r-rhdf5lib.
2019-05-06 00:14:40 +02:00
4540727a21
gnu: r-scran: Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.0.
[propagated-inputs]: Add r-bh, r-biocsingular, and r-dqrng; remove r-rhdf5lib.
2019-05-06 00:14:39 +02:00
f2a63d1588
gnu: r-delayedmatrixstats: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.0.
2019-05-06 00:14:39 +02:00
fbf3494972
gnu: Add r-biocfilecache.
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* gnu/packages/bioconductor.scm (r-biocfilecache): New variable.
2019-05-06 00:14:39 +02:00
fab5f7c8d9
gnu: r-interactivedisplaybase: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.22.0.
2019-05-06 00:14:39 +02:00
975b72fa10
gnu: r-edaseq: Update to 2.18.0.
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* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.18.0.
2019-05-06 00:14:39 +02:00
b765fc4a4c
gnu: r-deseq: Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.36.0.
2019-05-06 00:14:39 +02:00
95f3a46630
gnu: r-aroma-light: Update to 3.14.0.
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* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.14.0.
2019-05-06 00:14:39 +02:00
dd03589939
gnu: r-msnid: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.0.
2019-05-06 00:14:38 +02:00
b65c264907
gnu: r-msnbase: Update to 2.10.0.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.0.
2019-05-06 00:14:38 +02:00
ee386fcb1a
gnu: r-pcamethods: Update to 1.76.0.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.76.0.
2019-05-06 00:14:38 +02:00
f955afdabf
gnu: r-mzid: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.22.0.
2019-05-06 00:14:38 +02:00
9421e6b610
gnu: r-vsn: Update to 3.52.0.
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* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.52.0.
2019-05-06 00:14:38 +02:00
15f240e317
gnu: r-affy: Update to 1.62.0.
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* gnu/packages/bioinformatics.scm (r-affy): Update to 1.62.0.
2019-05-06 00:14:38 +02:00
fdbaa5c1e5
gnu: r-affyio: Update to 1.54.0.
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* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.54.0.
2019-05-06 00:14:38 +02:00
5498cc46b3
gnu: r-mzr: Update to 2.18.0.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.18.0.
2019-05-06 00:14:37 +02:00
24aabd8fd9
gnu: r-protgenerics: Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.16.0.
2019-05-06 00:14:37 +02:00
10cb9919fc
gnu: r-sva: Update to 3.32.0.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.0.
2019-05-06 00:14:37 +02:00
59bef6eaee
gnu: r-copywriter: Update to 2.16.0.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.16.0.
2019-05-06 00:14:37 +02:00
70c44443c3
gnu: r-chipseq: Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.34.0.
2019-05-06 00:14:37 +02:00
dbb4aa4a34
gnu: r-annotationfilter: Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.8.0.
2019-05-06 00:14:37 +02:00
f6ecdafa11
gnu: r-rhdf5: Update to 2.28.0.
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* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.28.0.
2019-05-06 00:14:37 +02:00
c030eb50c5
gnu: r-tximport: Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.0.
2019-05-06 00:14:36 +02:00
5b65a85949
gnu: r-mutationalpatterns: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.10.0.
2019-05-06 00:14:36 +02:00
45aeb4eb1d
gnu: r-bamsignals: Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.16.0.
2019-05-06 00:14:36 +02:00
23ce7f3b0b
gnu: r-rhtslib: Update to 1.16.1.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.1.
2019-05-06 00:14:36 +02:00
c648e672b7
gnu: r-zlibbioc: Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.30.0.
2019-05-06 00:14:36 +02:00
3be113b706
gnu: r-motifrg: Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.28.0.
2019-05-06 00:14:35 +02:00
a7143246f8
gnu: r-seqlogo: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.50.0.
2019-05-06 00:14:35 +02:00
6ef47ac82e
gnu: r-genomation: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.16.0.
2019-05-06 00:14:35 +02:00
d726689a70
gnu: r-seqpattern: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.16.0.
2019-05-06 00:14:35 +02:00
651b62c697
gnu: r-bsgenome: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.52.0.
2019-05-06 00:14:35 +02:00
971df3a784
gnu: r-topgo: Update to 2.36.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.36.0.
2019-05-06 00:14:34 +02:00
d31f8d1bd8
gnu: r-genomicfeatures: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.0.
2019-05-06 00:14:34 +02:00
40d97367f0
gnu: r-rtracklayer: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.0.
2019-05-06 00:14:34 +02:00
6ff6973502
gnu: r-genomicalignments: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.0.
2019-05-06 00:14:34 +02:00
8671d1e9d6
gnu: r-summarizedexperiment: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.0.
2019-05-06 00:14:34 +02:00
14561bb9e7
gnu: r-delayedarray: Update to 0.10.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.10.0.
[propagated-inputs]: Add r-matrix.
2019-05-06 00:14:34 +02:00
d2e165496b
gnu: r-biostrings: Update to 2.52.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.52.0.
2019-05-06 00:14:33 +02:00
e10b67c797
gnu: r-biocparallel: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.0.
2019-05-06 00:14:33 +02:00
933571ddcd
gnu: r-biomart: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.0.
2019-05-06 00:14:33 +02:00
a1b9378a8e
gnu: r-annotationdbi: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.46.0.
2019-05-06 00:14:33 +02:00
4aadfcd296
gnu: r-biobase: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.44.0.
2019-05-06 00:14:33 +02:00
b35bc56a8a
gnu: r-genomicranges: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.0.
2019-05-06 00:14:33 +02:00
bc0e5bc12e
gnu: r-xvector: Update to 0.24.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.24.0.
2019-05-06 00:14:32 +02:00
5fadf39280
gnu: r-limma: Update to 3.40.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.0.
2019-05-06 00:14:32 +02:00
0d094ad9ab
gnu: r-variantannotation: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.0.
[propagated-inputs]: Add r-rhtslib.
2019-05-06 00:14:32 +02:00
1e3f53a489
gnu: r-edger: Update to 3.26.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.0.
2019-05-06 00:14:32 +02:00
6dc05d0a86
gnu: r-genomeinfodb: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.20.0.
2019-05-06 00:14:32 +02:00
38142114b7
gnu: r-iranges: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.0.
2019-05-06 00:14:32 +02:00
192ddab3e5
gnu: r-s4vectors: Update to 0.22.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.0.
2019-05-06 00:14:31 +02:00
8bdf7d55be
gnu: r-bioccheck: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.20.0.
2019-05-06 00:14:31 +02:00
e01b72d225
gnu: r-biocstyle: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.12.0.
2019-05-06 00:14:31 +02:00
440af6482a
gnu: r-biocviews: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.0.
2019-05-06 00:14:31 +02:00
ce52cab000
gnu: r-grohmm: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.18.0.
2019-05-06 00:14:31 +02:00
49f30903f0
gnu: r-shortread: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.42.0.
2019-05-06 00:14:31 +02:00
fe40f55094
gnu: r-gostats: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
4d88dbe6eb
gnu: r-category: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
08d2a26d47
gnu: r-gseabase: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.46.0.
2019-05-06 00:14:30 +02:00
aa51a241c5
gnu: r-rbgl: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.60.0.
[propagated-inputs]: Add r-bh.
2019-05-06 00:14:30 +02:00
7f737246d8
gnu: r-annotationforge: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.26.0.
2019-05-06 00:14:30 +02:00
0a58282de7
gnu: r-dexseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.30.0.
2019-05-06 00:14:30 +02:00
9a39193d45
gnu: r-deseq2: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.24.0.
2019-05-06 00:14:30 +02:00
0183163d1e
gnu: r-genefilter: Update to 1.66.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.66.0.
2019-05-06 00:14:29 +02:00
295f35dfb9
gnu: r-preprocesscore: Update to 1.46.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.46.0.
2019-05-06 00:14:29 +02:00
52b4703c08
gnu: r-rgraphviz: Update to 2.28.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0.
2019-05-06 00:14:29 +02:00
3b13b6d777
gnu: r-units: Update to 0.6-3.
...
* gnu/packages/cran.scm (r-units): Update to 0.6-3.
2019-05-06 00:14:29 +02:00
3961b3b900
gnu: Add r-dqrng.
...
* gnu/packages/cran.scm (r-dqrng): New variable.
2019-05-06 00:14:29 +02:00
b8d6dffbdd
gnu: Add r-sitmo.
...
* gnu/packages/cran.scm (r-sitmo): New variable.
2019-05-06 00:14:29 +02:00
0c8960df13
gnu: Add r-clue.
...
* gnu/packages/cran.scm (r-clue): New variable.
2019-05-06 00:14:29 +02:00
be23c491cb
gnu: Add r-batchtools.
...
* gnu/packages/cran.scm (r-batchtools): New variable.
2019-05-06 00:14:28 +02:00
04bf86ba9f
gnu: Add r-blme.
...
* gnu/packages/cran.scm (r-blme): New variable.
2019-05-06 00:14:28 +02:00
2b9d4f5866
gnu: Add r-scrime.
...
* gnu/packages/cran.scm (r-scrime): New variable.
2019-05-06 00:14:28 +02:00
78735b9f34
gnu: Add r-grimport2.
...
* gnu/packages/cran.scm (r-grimport2): New variable.
2019-05-06 00:14:28 +02:00
8128189976
gnu: Add r-rcpphnsw.
...
* gnu/packages/cran.scm (r-rcpphnsw): New variable.
2019-05-06 00:14:28 +02:00
993912905d
gnu: Add r-biocsingular.
...
* gnu/packages/bioconductor.scm (r-biocsingular): New variable.
2019-05-06 00:14:28 +02:00
72032c9d5f
gnu: Add r-base64url.
...
* gnu/packages/cran.scm (r-base64url): New variable.
2019-05-06 00:14:27 +02:00
ba4c0d69b0
gnu: mesa: Update gallium drivers.
...
* gnu/packages/gl.scm (mesa)[arguments]: Update configure-flags for
aarch64 and armhf for gallium drivers.
2019-05-05 20:34:59 +03:00
28b26eca45
installer: Fix typo.
...
* gnu/installer/newt/menu.scm (run-menu-page): Add missing space after
period.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 17:21:18 +02:00
dcfa0acd7b
Correct email and license info for Brendan Tildesley.
...
* gnu/packages/audio.scm: Correct email and license info.
* gnu/packages/ebook.scm: Correct email and license info.
* gnu/packages/fonts.scm: Correct email and license info.
* gnu/packages/freedesktop.scm: Correct email and license info.
* gnu/packages/gnome.scm: Correct email and license info.
* gnu/packages/linux.scm: Correct email and license info.
* gnu/packages/lxde.scm: Correct email and license info.
* gnu/packages/python-web.scm: Correct email and license info.
* gnu/packages/python-xyz.scm: Correct email and license info.
* gnu/packages/python.scm: Correct email and license info.
* gnu/packages/video.scm: Correct email and license info.
* gnu/packages/web.scm: Correct email and license info.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 17:16:51 +02:00
996186b64d
gnu: lz4: Update to 1.9.1.
...
* gnu/packages/compression.scm (lz4): Update to 1.9.1.
2019-05-05 15:33:39 +02:00
ee3ce0d71d
gnu: calibre: Update to 3.42.0.
...
* gnu/packages/ebook.scm (calibre): Update to 3.42.0.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
421c5e92f9
gnu: calibre: Shorten long line.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Shorten long line.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
d6dfe8b634
gnu: calibre: Install man pages.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[install-man-pages]:
New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
f3f017dbf0
gnu: calibre: Delete various junk from source.
...
* gnu/packages/ebook.scm (calibre)[source](snippet): Delete various junk from
source.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
62a97dc0fb
gnu: calibre: Remove libxrender as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Remove libxrender.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
68435a7f55
gnu: calibre: Unbundle python2-odfpy.
...
* gnu/packages/ebook.scm (calibre)[snippet]: Remove all of src/odf.
[inputs]: Add python2-odfpy.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
7312a7d073
gnu: calibre: Remove some comments.
...
* gnu/packages/ebook.scm (calibre): There is no unrar in Guix currently, and
pdftohtml is in poppler, so we can remove this comment.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
eb5f620134
gnu: calibre: Enable tests.
...
* gnu/packages/ebook.scm (calibre): Enable tests.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
cbe399e736
gnu: calibre: Disable sqlite test.
...
* gnu/packages/patches/calibre-remove-test-sqlite.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
4bcd0647b7
gnu: calibre: Disable Qt test.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Disable
Qt test.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
f89f5abada
gnu: calibre: Disable bs4 test.
...
* gnu/packages/patches/calibre-remove-test-bs4.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
6e1ab5fadb
gnu: calibre: Use "linux.py" to install desktop files.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify.
[install-mimetypes]: Remove.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
ad74978a95
gnu: Add python-soupsieve, python2-soupsieve.
...
* gnu/packages/python-xyz.scm (python-soupsieve): New variable.
(python2-soupsieve): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
b01cde1ac9
gnu: calibre: Disable tests that require networking.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
15871b4087
gnu: calibre: Remove unrar test.
...
* gnu/packages/patches/calibre-remove-test-unrar.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
c187c9d786
gnu: python-regex, python2-regex: Update to 2019.04.14.
...
* gnu/packages/python.scm (python-regex, python2-regex): Update to 2019.04.14.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
adc25b68b1
gnu: calibre: Add python2-html2text as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html2text.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
7a82ceb7bb
gnu: Add python-html2text, python2-html2text.
...
* gnu/packages/python-web.scm (python-html2text): New variable.
(python2-html2text): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
13068a8ccf
gnu: calibre: Move font unbundling to after check phase.
...
* gnu/packages/ebook.scm (calibre)[snippet]: Modify.
[native-inputs]: Remove font-liberation.
[inputs]: Add font-liberation.
[arguments]<#:phases>[install-font-liberation]: Delete phase.
[unbundle-font-liberation]: New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
4f29902080
gnu: calibre: Add missing dependencies as indicated by tests.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html5lib,
python2-psutil.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
b0038957f5
gnu: calibre: Build rapydscript.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Modify.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
d243b41dd0
gnu: calibre: Use system mathjax.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]:
New phase.
[inputs]: Add js-mathjax.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
4e6f8a1442
gnu: calibre: Update to 3.41.3.
...
* gnu/packages/ebook.scm (calibre): Update to 3.41.3.
[inputs]: Replace python2-cssutils by python2-css-parser.
[snippet]: Modify.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
c8e214e80d
gnu: wgetpaste: Make all dependencies explicit.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Replace limited
‘use-inputs’ phase with a ‘wrap-program’ one.
2019-05-05 00:10:44 +02:00
4d3990c9f3
gnu: wgetpaste: Return #t from all phases.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Return #t from ‘install’ phase.
2019-05-05 00:10:44 +02:00
fbc2531395
gnu: tor: Remove explicit hardening flags.
...
* gnu/packages/tor.scm (tor)[arguments]: Remove #:configure-flags that
merely confirm the defaults.
2019-05-05 00:10:24 +02:00
0d6cfaa3dd
gnu: nano: Update to 4.2.
...
* gnu/packages/nano.scm (nano): Update to 4.2.
2019-05-04 15:43:22 -04:00
4e933afda4
gnu: python-cffi: Fix tests.
...
Fixes issue #35371 (see: https://bugs.gnu.org/35371 ).
* gnu/packages/libffi.scm (python-cffi)[phases]
{patch-paths-of-dynamically-loaded-libraries}: Add phase.
[home-page]: Update URL.
2019-05-04 13:52:57 -04:00
8aeef53497
gnu: coq-bignums: Update to 8.9.0.
...
* gnu/packages/coq.scm (coq-bignums): Update to 8.9.0.
2019-05-04 19:41:44 +02:00
f5b0d90490
gnu: coq-mathcomp: Update to 1.8.0.
...
* gnu/packages/coq.scm (coq-mathcomp): Update to 1.8.0.
2019-05-04 19:41:35 +02:00
1f1ea9c0cb
gnu: coq-gappa: Update to 1.3.4.
...
* gnu/packages/coq.scm (coq-gappa): Update to 1.3.4.
2019-05-04 19:41:28 +02:00
e03e1b5584
gnu: coq: Update to 8.9.0.
...
* gnu/packages/coq.scm (coq): Update to 8.9.0.
(coq-autosubst): Update to latest commit.
(coq-equations): Update to 1.2-beta2.
2019-05-04 19:41:04 +02:00
a8bb8fccd8
gnu: harfbuzz: Update source hash.
...
The previous tarball was modified in-place; see
<https://github.com/harfbuzz/harfbuzz/issues/1641 >.
* gnu/packages/gtk.scm (harfbuzz)[source](sha256): Update.
2019-05-04 18:01:12 +02:00
57e839a26d
gnu: opus: Update to 1.3.1.
...
* gnu/packages/xiph.scm (opus): Update to 1.3.1.
2019-05-04 16:53:49 +02:00
baff6b5e85
gnu: libdrm: Update to 2.4.98.
...
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.98.
2019-05-04 16:53:49 +02:00
111adbd338
gnu: libpsl: Update to 0.21.0.
...
* gnu/packages/web.scm (libpsl): Update to 0.21.0.
2019-05-04 16:53:49 +02:00
11bab809e1
gnu: python-cython: Update to 0.29.7.
...
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.7.
2019-05-04 16:53:49 +02:00
9adae0a017
gnu: pcre2: Update to 10.33.
...
* gnu/packages/pcre.scm (pcre2): Update to 10.33.
2019-05-04 16:53:49 +02:00
569f53e1a8
gnu: imagemagick: Update to 6.9.10-42.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-42.
2019-05-04 16:53:49 +02:00
87d336e20f
gnu: gtk+: Update to 3.24.8.
...
* gnu/packages/gtk.scm (gtk+): Update to 3.24.8.
[source](snippet): Remove.
2019-05-04 16:53:49 +02:00
c9c63edbde
gnu: gstreamer: Update to 1.16.0.
...
* gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base, gst-plugins-bad,
gst-plugins-ugly, python-gst): Update to 1.16.0.
(gst-plugins-good): Likewise.
[source](patches): Remove.
[arguments]: Remove #:make-flags.
(gst-libav): Update to 1.16.0.
[inputs]: Change FFMPEG-3.4 to FFMPEG.
* gnu/packages/patches/gst-plugins-good-libvpx-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2019-05-04 16:53:48 +02:00
46c39e1e47
gnu: orc: Update to 0.4.29.
...
* gnu/packages/gstreamer.scm (orc): Update to 0.4.29.
2019-05-04 16:53:48 +02:00
1ce1ebc303
gnu: mesa: Update to 19.0.3.
...
* gnu/packages/gl.scm (mesa): Update to 19.0.3.
2019-05-04 16:53:48 +02:00
420b013724
gnu: libpng: Don't build 'libpng16.a'.
...
* gnu/packages/image.scm (libpng)[arguments]: Add #:configure-flags.
2019-05-04 16:25:54 +02:00
3784b580ef
gnu: QPDF: Update to 8.4.1.
...
* gnu/packages/pdf.scm (qpdf): Update to 8.4.1.
2019-05-04 16:25:53 +02:00
ae528aaf19
gnu: perl: Update to 5.28.2.
...
* gnu/packages/perl.scm (perl): Update to 5.28.2.
2019-05-04 16:25:53 +02:00
45a3ad2ea6
gnu: nghttp2: Update to 1.38.0.
...
* gnu/packages/web.scm (nghttp2): Update to 1.38.0.
2019-05-04 16:25:53 +02:00
63432c9647
gnu: SQLite: Update to 3.28.0.
...
* gnu/packages/sqlite.scm (sqlite): Update to 3.28.0.
2019-05-04 16:25:53 +02:00
e77412362f
gnu: OpenBLAS: Update to 0.3.6.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.6.
2019-05-04 16:25:53 +02:00
27ed6960be
gnu: icu4c: Update to 64.2.
...
* gnu/packages/icu4c.scm (icu4c): Update to 64.2.
[native-inputs]: Add PYTHON.
2019-05-04 16:25:52 +02:00
3b08c873d8
gnu: fontforge: Update to 20190413.
...
* gnu/packages/fontutils.scm (fontforge): Update to 20190413.
2019-05-04 16:25:52 +02:00
de7dae6e10
gnu: CMake: Update to 3.14.3.
...
* gnu/packages/cmake.scm (cmake-minimal): Update to 3.14.3.
2019-05-04 16:25:52 +02:00
176003dafe
gnu: meson: Update to 0.50.1.
...
* gnu/packages/build-tools.scm (meson): Update to 0.50.1.
2019-05-04 16:25:52 +02:00
a5e9413ce8
gnu: python: Disable failing test.
...
Fixes issue #35556 (see: https://bugs.gnu.org/35556 ).
* gnu/packages/python.scm (python-3.7)[make-flags]: Exclude the test "test_asyncio",
which currently fails.
2019-05-03 23:46:29 -04:00
187f9636f1
gnu: ocaml-menhir: Update to 20181113.
...
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20181113.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-05-03 20:46:22 +02:00
52c3cb2687
gnu: Add python-django-extensions.
...
* gnu/packages/django.scm (python-django-extensions): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-03 17:47:30 +02:00
8d73558d50
gnu: Add python-django-taggit.
...
* gnu/packages/django.scm (python-django-taggit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-03 17:47:30 +02:00
78d6d5e8d9
shepherd: Include /etc/localtime in service containers.
...
Fixes a bug whereby Tor (for example) would emit syslog messages with a
UTC timestamp instead of local time.
* gnu/build/shepherd.scm (default-mounts): Add /etc/localtime to
MAPPINGS.
2019-05-03 17:47:29 +02:00
c8bb86f51c
gnu: tor: Update to 0.4.0.5.
...
* gnu/packages/tor.scm (tor): Update to 0.4.0.5.
2019-05-03 15:22:22 +02:00
02eb70bd21
gnu: Add python-css-parser, python2-css-parser.
...
* gnu/packages/python-web.scm (python-css-parser, python2-css-parser): New
variables.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 13:58:22 +02:00
c2dd07aba5
gnu: web: Change 'l:' prefix to 'license:'.
...
* gnu/packages/web.scm: Change #:prefix l: to #:prefix license:.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 13:58:21 +02:00
9d2d9cb14b
installer: Do not sort the guided partition schemes in the selection page.
...
Previously, the "Everything is one partition" entry would come first in
English but it would be second in French. This change keeps it the
first choice regardless of the language.
* gnu/installer/newt/partition.scm (run-scheme-page): Pass
#:sort-listbox-items? to 'run-scheme-page'.
2019-05-03 13:50:49 +02:00
ecb0df6817
installer: Ensure 'packages' field is a superset of '%base-packages'.
...
Fixes <https://bugs.gnu.org/35541 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
* gnu/installer/services.scm (system-services->configuration): Generate
a snippet that appends PACKAGES to %BASE-PACKAGES.
2019-05-03 13:50:49 +02:00
3e85909044
Correct email address for ison.
...
* .mailmap, gnu/packages/lxde.scm: Update email address.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 08:45:55 +02:00
d7afe74d60
gnu: r-cluster: Update to 2.0.9.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.9.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2019-05-03 08:00:54 +02:00
f66f40400c
gnu: r-irkernel: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-irkernel): Update to 1.0.1.
2019-05-03 08:00:54 +02:00
27b4bfbe4b
gnu: r-ouch: Update to 2.14-1.
...
* gnu/packages/cran.scm (r-ouch): Update to 2.14-1.
2019-05-03 08:00:53 +02:00
dea3df2bd1
gnu: r-fs: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-fs): Update to 1.3.0.
2019-05-03 08:00:49 +02:00
8d5edc9cea
gnu: linux-libre: Update to 5.0.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.11.
(%linux-libre-hash): Update hash.
2019-05-02 22:50:01 -04:00
c52fb6e11d
gnu: linux-libre@4.19: Update to 4.19.38.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.38.
(%linux-libre-4.19-hash): Update hash.
2019-05-02 22:49:14 -04:00
4dc3f7c7dc
gnu: linux-libre@4.14: Update to 4.14.115.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.115.
(%linux-libre-4.14-hash): Update hash.
2019-05-02 22:48:26 -04:00
e2474df6ee
gnu: linux-libre@4.9: Update to 4.9.172.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.172.
2019-05-02 22:47:46 -04:00
82329a17f4
gnu: pluma: Use older version of gtksourceview.
...
Reported by L p R n d n <guix@lprndn.info>.
Fixes <https://bugs.gnu.org/35535 >.
* gnu/packages/mate.scm (pluma)[inputs]: Replace gtksourceview with
gtksourceview-3.
2019-05-02 23:12:39 +02:00
2f869b0279
gnu: mate-applets: Use older version of gtksourceview.
...
Reported by L p R n d n <guix@lprndn.info>.
* gnu/packages/mate.scm (mate-applets)[inputs]: Replace gtksourceview with
gtksourceview-3.
2019-05-02 23:12:38 +02:00
48f19e60c4
gnu: le-certs: Update hashes.
...
They added the 3 missing '^M' to all pem certs.
* gnu/packages/certs.scm (le-certs)[inputs]: Update the hashes of
isrgrootx1.pem, letsencryptauthorityx3.pem, letsencryptauthorityx4.pem.
2019-05-02 21:40:41 +08:00
746ac457cc
Merge branch 'version-1.0.0'
2019-05-02 15:32:30 +02:00
c457f109be
gnu: php: Update to 7.3.5.
...
* gnu/packages/php.scm (php): Update to 7.3.5.
2019-05-02 14:53:23 +02:00
d5f4d5b683
gnu: emacs-emms: Update to 5.2.
...
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 5.2.
2019-05-02 11:54:39 +02:00
5f83b5153a
gnu: python-duniterpy: Update to 0.53.1.
...
* gnu/packages/finance.scm (python-duniterpy): Update to 0.53.1.
2019-05-02 10:22:36 +02:00
45a37f5b05
gnu: emacs-relint: Update to 1.7.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.7.
2019-05-02 10:14:18 +02:00
d34984b9fe
gnu: emacs-xr: Update to 1.11.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.11.
2019-05-02 10:13:20 +02:00
c2974d1e46
gnu: faudio: Update to 19.05.
...
* gnu/packages/audio.scm (faudio): Update to 19.05.
2019-05-02 08:57:24 +02:00
9bec3ba4ca
gnu: python-flexmock: Update to 0.10.4.
...
* gnu/packages/check.scm (python-flexmock): Update to 0.10.4.
2019-05-02 00:52:33 +02:00
123bba720d
gnu: python-hypothesis: Update to 4.18.3.
...
* gnu/packages/check.scm (python-hypothesis): Update to 4.18.3.
2019-05-02 00:38:53 +02:00
56e95d54d2
gnu: python-pytest: Update to 4.4.1.
...
* gnu/packages/check.scm (python-pytest): Update to 4.4.1.
[arguments]: Enable previously failing tests.
2019-05-02 00:38:53 +02:00
f1e9999b5f
gnu: boost: Update to 1.70.0.
...
* gnu/packages/boost.scm (boost): Update to 1.70.0.
2019-05-02 00:38:53 +02:00
0a404bdb5e
gnu: libuv: Update to 1.28.0.
...
* gnu/packages/libevent.scm (libuv): Update to 1.28.0.
2019-05-02 00:38:53 +02:00
3d8f6577bf
gnu: util-linux: Update to 2.33.2.
...
* gnu/packages/linux.scm (util-linux): Update to 2.33.2.
2019-05-02 00:38:53 +02:00
46d258cbe2
gnu: pixman: Update to 0.38.4.
...
* gnu/packages/xdisorg.scm (pixman): Update to 0.38.4.
2019-05-02 00:38:53 +02:00
f6e25b3358
gnu: python: Update to 3.7.3.
...
* gnu/packages/python.scm (python-3.7): Update to 3.7.3.
2019-05-02 00:38:53 +02:00
1f62621607
gnu: python-more-itertools: Update to 7.0.0.
...
* gnu/packages/python-xyz.scm (python-more-itertools): Update to 7.0.0.
2019-05-02 00:38:53 +02:00
922fbf8a66
gnu: jemalloc: Update to 5.2.0.
...
* gnu/packages/jemalloc.scm (jemalloc): Update to 5.2.0.
2019-05-02 00:38:53 +02:00
2da9b81837
gnu: harfbuzz: Update to 2.4.0.
...
* gnu/packages/gtk.scm (harfbuzz): Update to 2.4.0.
2019-05-02 00:38:52 +02:00
1ec290e27a
gnu: curl: Update to 7.64.1.
...
* gnu/packages/curl.scm (curl): Update to 7.64.1.
2019-05-02 00:38:52 +02:00
8b5b3acab3
gnu: libpng: Remove graft for 1.6.37.
...
* gnu/packages/image.scm (libpng): Update to 1.6.37.
[replacement]: Remove field.
(libpng-1.6.37): Remove variable.
2019-05-02 00:38:52 +02:00
8de1979d7c
gnu: openjpeg: Don't build 'libopenjp2.a'.
...
* gnu/packages/image.scm (openjpeg)[arguments]: Add #:configure-flags.
2019-05-02 00:38:52 +02:00
de1b5e4959
gnu: openjpeg: Incorporate grafted changes.
...
* gnu/packages/image.scm (openjpeg): Update to 2.3.1.
[replacement]: Remove.
[source]: Change to GIT-FETCH.
2019-05-02 00:38:52 +02:00
50943b4878
gnu: lcms: Incorporate grafted changes.
...
* gnu/packages/ghostscript.scm (lcms)[replacement]: Remove.
[source](patches): New field.
(lcms/fixed): Remove variable.
2019-05-02 00:38:52 +02:00
c078f1b08b
gnu: texlive-bin: Adapt to Poppler 0.75.
...
This is a follow-up to commit 2eb92ce85f
2019-05-02 00:38:52 +02:00
3b458d5462
Merge branch 'master' into core-updates
2019-05-01 23:11:41 +02:00
14da3daafc
gnu: termite: Update to 15.
...
* gnu/packages/terminals.scm (termite): Update to 15.
2019-05-01 22:15:02 +02:00
03c59a2525
gnu: vte-ng: Update to 0.56.2.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.56.2.a.
[native-inputs]: Add GCC-7.
[arguments]: Add GCC7 workaround.
2019-05-01 22:15:02 +02:00
a0d44bb09f
gnu: spice: Update to 0.14.2 [fixes CVE-2019-3813].
...
* gnu/packages/spice.scm (spice): Update to 0.14.2.
2019-05-01 22:15:01 +02:00
a550da6247
gnu: spice-protocol: Update to 0.14.0.
...
* gnu/packages/spice.scm (spice-protocol): Update to 0.14.0.
(spice-protocol-0.12): New public variable.
(spice-gtk)[propagated-inputs]: Change SPICE-PROTOCOL to SPICE-PROTOCOL-0.12.
2019-05-01 22:15:01 +02:00
15ada26abb
gnu: signify: Update to 25.
...
* gnu/packages/crypto.scm (signify): Update to 25.
2019-05-01 22:15:01 +02:00
a5006ede7f
gnu: signify: Don't use unstable tarball.
...
* gnu/packages/crypto.scm (signify)[source]: Change to GIT-FETCH.
2019-05-01 22:15:01 +02:00
f99418e3f3
gnu: ungoogled-chromium: Update to 74.0.3729.131-0.9e33022 [fixes CVE-2019-5824].
...
* gnu/packages/chromium.scm (%chromium-version): Update to 74.0.3729.131.
(ungoogled-chromium-source): Update Chromium hash.
2019-05-01 22:15:01 +02:00
ca86b0bae3
gnu: ungoogled-chromium: Unbundle openjpeg again.
...
This is a follow-up to commit 40594fdcb9e360d68e5444771b5467ba5bbbfcf2.
* gnu/packages/chromium.scm (%preserved-third-party-files): Remove
'third_party/pdfium/third_party/libopenjpeg20'.
(ungoogled-chromium)[arguments]: Fix typo in #:configure-flags.
2019-05-01 22:15:01 +02:00
bd9d5dbb86
gnu: php: Disable failing tests on armhf.
...
* gnu/packages/php.scm (php)[arguments]: Disable two failing tests on
armhf.
2019-05-01 21:13:34 +02:00
9c941364bf
vm: Build ISOs and VM images in a UTF-8 environment.
...
Fixes a bug whereby building an image containing non-ASCII file names
would fail due to improper decoding of file names.
* gnu/system/vm.scm (iso9660-image, qemu-image): Set GUIX_LOCPATH and
call 'setlocale' in the build environment.
2019-05-01 21:11:22 +02:00
17acc215bf
gnu: guix: Update to 326dcbf.
2019-05-01 17:29:02 +02:00
326dcbf1b3
gnu: guix: Update to 1.0.0.
2019-05-01 14:11:34 +02:00
ae66feeee0
gnu: r-irkernel: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-irkernel): Update to 1.0.0.
2019-05-01 11:13:38 +02:00
944d4c483a
gnu: r-officer: Update to 0.3.4.
...
* gnu/packages/cran.scm (r-officer): Update to 0.3.4.
2019-05-01 10:10:04 +02:00
0b5b9d69a8
gnu: r-lmtest: Update to 0.9-37.
...
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-37.
2019-05-01 10:09:52 +02:00
8bc8cea987
gnu: r-shinyfiles: Update to 0.7.3.
...
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.7.3.
2019-05-01 10:09:10 +02:00
4c13ccbf39
vm-image: Add 'label' field.
...
* gnu/system/examples/vm-image.tmpl (label): New field.
2019-05-01 09:33:54 +02:00
af74e4350f
gnu: ungoogled-chromium: Update to 74.0.3729.108-0.9e33022.
...
* gnu/packages/chromium.scm (%preserved-third-party-files): Add four new
directories, delete three obsolete.
(%chromium-version, %ungoogled-revision, %debian-revision): Update for 74.
(ungoogled-chromium-source): Update hashes. Ignore Debians GCC6 patches.
(ungoogled-chromium)[arguments]: Add "use_system_openjpeg" to #:configure-flags.
2019-05-01 01:31:31 +02:00
947134492e
gnu: Remove greenisland.
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* gnu/packages/display-managers.scm (greenisland): Remove variable.
2019-05-01 01:31:31 +02:00
4ee55938de
gnu: u-boot-tools: Only run full test suite on x86_64.
...
* gnu/packages/bootloaders (u-boot-tools)[arguments]<#:phases>[check]:
Modify phase.
[check-x86]: New phase.
[patch]: New phase.
2019-04-30 13:58:37 -07:00
8d2d68a5fb
gnu: ocaml-migrate-parsetree: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree)[source]: Add FILE-NAME.
2019-04-30 21:07:13 +02:00
b7a4cb5206
gnu: ocaml-opam-file-format: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-opam-file-format)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
ad09f3b024
gnu: sbcl-cl-syntax: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-cl-syntax)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
2af4698016
gnu: emacs-dired-sidebar: Name checkout.
...
* gnu/packages/emacs-xyz.scm (emacs-dired-sidebar)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
0abf2d91cf
gnu: sbcl-rfc2388: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-rfc2388)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
7026f6b27e
gnu: ocaml-ppx-typerep-conv: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
3a75925e73
gnu: ocaml-ppx-hash: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-ppx-hash)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
4a6de00217
gnu: ocaml-ppx-enumerate: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
fbd08d42a6
gnu: ocaml-core: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-core)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
5924f621bb
gnu: sbcl-trivial-backtrace: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-trivial-backtrace)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
a97fc9cd8e
gnu: sbcl-myway: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-myway)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
8f4b57000d
gnu: emacs-helm-pass: Name checkout.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-pass)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
2ba3dc0bdf
gnu: emacs-zotxt: Name checkout.
...
* gnu/packages/emacs-xyz.scm (emacs-zotxt)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
6f5be83cd7
gnu: u-boot-tools: Only run full test suite on x86_64.
...
* gnu/packages/bootloaders (u-boot-tools)[arguments]<#:phases>[check]:
Modify phase.
[check-x86]: New phase.
[patch]: New phase.
2019-04-30 19:49:16 +02:00
094aaa1a1e
gnu: gexiv2: Skip failing test on 32-bit platforms.
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* gnu/packages/gnome.scm (gexiv2)[arguments]: New field.
2019-04-30 18:29:10 +02:00
9b241d4ce2
gnu: python-nose-timer: Update to 0.7.5.
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* gnu/packages/check.scm (python-nose-timer): Update to 0.7.5.
2019-04-30 17:11:52 +02:00
e976e199c4
gnu: sbcl-cl+ssl: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-cl+ssl)[source]: Add FILE-NAME.
2019-04-30 17:11:36 +02:00
e76a972bde
gnu: ghc-esqueleto: Name checkout.
...
* gnu/packages/haskell.scm (ghc-esqueleto)[source]: Add FILE-NAME.
2019-04-30 17:05:22 +02:00
9e6cce4440
gnu: ocaml-ppx-tools: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-ppx-tools)[source]: Add FILE-NAME.
2019-04-30 17:04:13 +02:00
45ea12f31e
gnu: sbcl-cl-base64: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-cl-base64)[source]: Add FILE-NAME.
2019-04-30 17:03:08 +02:00
4fdad3edc3
gnu: eid-mw: Name checkout.
...
* gnu/packages/security-token.scm (eid-mw)[source]:
Add FILE-NAME.
2019-04-30 17:02:38 +02:00
e4b2866cd0
gnu: libplist: Run tests sequentially.
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Fixes <https://bugs.gnu.org/35501 >.
Reported by Brendan Tildesley <mail@brendan.scot>.
* gnu/packages/libusb.scm (libplist)[arguments]: New field.
2019-04-30 16:47:29 +02:00
5a3d3d6a3b
gnu: Add i3lock.
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* gnu/packages/wm.scm (i3lock): New public variable.
(cherry picked from commit b6afc35051
2019-04-30 15:09:49 +02:00
378b8a6446
gnu: youtube-dl: Update to 2019.04.30.
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* gnu/packages/video.scm (youtube-dl): Update to 2019.04.30.
2019-04-30 14:30:18 +02:00
eea094ccdc
gnu: ruby-rest-client: Fix lost ,s.
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* gnu/packages/ruby.scm (ruby-rest-client)[native-inputs]:
Move unquotes to their operands.
2019-04-30 13:03:56 +02:00
b77c8ddbe1
gnu: maven: Update to 3.6.1.
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* gnu/packages/maven.scm (maven-artifact): Update to 3.6.1.
2019-04-30 12:41:19 +02:00
6f737ae68f
gnu: java-plexus-archiver: Update to 4.1.0.
...
* gnu/packages/java.scm (java-plexus-archiver): Update to 4.1.0.
2019-04-30 12:41:11 +02:00
0cd8efcc8c
gnu: java-plexus-utils: Update to 3.2.0.
...
* gnu/packages/java.scm (java-plexus-utils): Update to 3.2.0.
2019-04-30 12:41:06 +02:00
92597c3cec
services: colord: Make public and searchable.
...
* gnu/services/desktop.scm (colord-service-type): Make public.
[description]: New field.
2019-04-30 12:03:02 +02:00
7614193099
services: bluetooth: Make public and searchable.
...
Until now 'guix system search bluetooth' would turn up nothing.
* gnu/services/desktop.scm (bluetooth-service-type)
(bluetooth-configuration): Make public.
(bluetooth-service-type)[description]: New field.
2019-04-30 11:59:47 +02:00
45fb7b404d
gnu: Rename some games to match upstream project name.
...
* gnu/packages/games.scm (armagetronad):
(cataclysm-dda):
(abbaye):
(wesnoth):
(wesnoth-server):
(starfighter):
(kiki):
(fillets-ng):
(crawl):
(crawl-tiles):
(tome4):
(btanks):
(battle-tanks):
(edgar): Use these as the package definition.
(armagetron-advanced):
(cataclysm-dark-days-ahead):
(l-abbaye-des-morts):
(the-battle-for-wesnoth):
(the-battle-for-wesnoth-server):
(project-starfighter):
(kiki-the-nano-bot):
(fish-fillets-ng):
(dungeon-crawl-stone-soup):
(dungeon-crawl-stone-soup-tiles):
(tales-of-maj-eyal):
(the-legend-of-edgar): Turn these into obsolete aliases.
This reverts renames made by the following commits:
f95e33a7adb1aee9fce2f6a21d61de24a67aef2a36a0b5b48c8b6e2bc15f6639295f2f184f5c8db1ecdb1348ad375cb94130c91ed484d0973bd8a62cdf42e0f9c9
2019-04-30 10:42:00 +02:00
6215132155
gnu: ocaml-camomile: Install data in the store.
...
* gnu/packages/ocaml.scm (ocaml-camomile)[arguments]: Fix configuration
to look for and install data in the store.
2019-04-30 10:28:21 +02:00
f420d639df
gnu: i3-wm: Use absolute paths in session files.
...
* gnu/packages/wm.scm (i3-wm)[arguments]: Add a phase to patch the
session '.desktop' files to use the absolute paths of the 'i3' and
'i3-with-shmlog' binaries.
2019-04-29 23:04:35 -04:00
9aa470e912
gnu: awesome: Use absolute paths in session file.
...
* gnu/packages/wm.scm (awesome)[arguments]: Add a phase to patch the
session '.desktop' file to use the absolute path of the 'awesome'
binary.
2019-04-29 23:04:35 -04:00
5aafccebbe
gnu: gdm: Avoid selecting the placeholder session.
...
This fixes <https://bugs.gnu.org/35484 >.
* gnu/packages/gnome.scm (gdm)[arguments]: Modify the pre-configure phase to
patch GDM to only select the placeholder session if there are no others.
2019-04-29 23:04:27 -04:00
aa7cdc57dc
gnu: i3-wm: Use absolute paths in session files.
...
* gnu/packages/wm.scm (i3-wm)[arguments]: Add a phase to patch the
session '.desktop' files to use the absolute paths of the 'i3' and
'i3-with-shmlog' binaries.
2019-04-29 22:36:27 -04:00
4ec42524dd
gnu: awesome: Use absolute paths in session file.
...
* gnu/packages/wm.scm (awesome)[arguments]: Add a phase to patch the
session '.desktop' file to use the absolute path of the 'awesome'
binary.
2019-04-29 20:54:43 -04:00
e8c6e771c1
gnu: gdm: Avoid selecting the placeholder session.
...
This fixes <https://bugs.gnu.org/35484 >.
* gnu/packages/gnome.scm (gdm)[arguments]: Modify the pre-configure phase to
patch GDM to only select the placeholder session if there are no others.
2019-04-29 20:54:43 -04:00
649220adae
gnu: Rename some games to match upstream project name.
...
* gnu/packages/games.scm (armagetronad):
(cataclysm-dda):
(abbaye):
(wesnoth):
(wesnoth-server):
(starfighter):
(kiki):
(fillets-ng):
(crawl):
(crawl-tiles):
(tome4):
(btanks):
(battle-tanks):
(edgar): Use these as the package definition.
(armagetron-advanced):
(cataclysm-dark-days-ahead):
(l-abbaye-des-morts):
(the-battle-for-wesnoth):
(the-battle-for-wesnoth-server):
(project-starfighter):
(kiki-the-nano-bot):
(fish-fillets-ng):
(dungeon-crawl-stone-soup):
(dungeon-crawl-stone-soup-tiles):
(tales-of-maj-eyal):
(the-legend-of-edgar): Turn these into obsolete aliases.
This reverts renames made by the following commits:
f95e33a7adb1aee9fce2f6a21d61de24a67aef2a36a0b5b48c8b6e2bc15f6639295f2f184f5c8db1ecdb1348ad375cb94130c91ed484d0973bd8a62cdf42e0f9c9
2019-04-30 02:02:39 +02:00
6f7f8543c5
gnu: r-rcpparmadillo: Update to 0.9.400.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.400.2.0.
2019-04-30 00:33:55 +02:00
8b96b86065
gnu: r-repr: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-repr): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
2019-04-30 00:33:55 +02:00
5fce90135c
gnu: r-ipred: Update to 0.9-9.
...
* gnu/packages/cran.scm (r-ipred): Update to 0.9-9.
2019-04-30 00:33:55 +02:00
0534427551
vm: Pass -smp to QEMU to allow use of multiple cores.
...
* gnu/build/vm.scm (load-in-linux-vm): Pass (parallel-job-count) to QEMU with
-smp to allow using multiple cores.
2019-04-29 21:11:38 +01:00
b6afc35051
gnu: Add i3lock.
...
* gnu/packages/wm.scm (i3lock): New public variable.
2019-04-29 20:10:43 +02:00
05e1534ee8
gnu: kodi: Update to 18.2.
...
* gnu/packages/kodi.scm (kodi): Update to 18.2.
* gnu/packages/patches/kodi-set-libcurl-ssl-parameters.patch: Adjust for
upstream changes.
2019-04-29 20:10:43 +02:00
06c86f166d
gnu: msmtp: Update to 1.8.4.
...
* gnu/packages/mail.scm (msmtp): Update to 1.8.4.
2019-04-29 20:10:43 +02:00
b339f14cb2
gnu: elogind: Update to 241.3.
...
* gnu/packages/freedesktop.scm (elogind): Update to 241.3.
2019-04-29 20:10:42 +02:00
2e652add1f
gnu: ftgl: Don't build libftgl.a.
...
* gnu/packages/gl.scm (ftgl)[arguments]: Add "--disable-static" to #:configure-flags.
2019-04-29 20:10:42 +02:00
a1570c89fe
gnu: qemu: Build verbosely.
...
* gnu/packages/virtualization.scm (qemu)[arguments]: Remove phase
'make-gtester-verbose' in favor of #:make-flags.
2019-04-29 20:10:42 +02:00
4267481a4e
gnu: Remove scmutils.
...
Fixes <https://bugs.gnu.org/34203 >.
* gnu/packages/scheme.scm (scmutils): Remove variable.
2019-04-29 17:20:44 +02:00
373a2a0797
gnu: ocaml-yojson: Update to 1.7.0.
...
* gnu/packages/ocaml.scm (ocaml-yojson): Update to 1.7.0.
(ocaml-merlin): Use jbuild to prevent a build failure due to a
deprecation warning.
2019-04-29 15:44:14 +02:00
fdd9ab3721
gnu: Add missing module in games.scm.
2019-04-29 15:08:59 +02:00
1abe2e2a29
gnu: Add missing modules in games.scm.
2019-04-29 14:56:32 +02:00
a3d4a631fe
gnu: Add hedgewars.
...
* gnu/packages/games.scm (hedgewars): New variable.
2019-04-29 14:37:58 +02:00
e8a0696d56
gnu: Add jumpnbump.
...
* gnu/packages/games.scm (jumpnbump): New variable.
2019-04-29 14:37:01 +02:00
1a8984536f
gnu: Add sdl2-net.
...
* gnu/packages/sdl.scm (sdl2-net): New variable.
2019-04-29 14:37:01 +02:00
6b99afeef8
gnu: u-boot: Update to 2019.04.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2019.04.
[source]: Add patch.
(u-boot-novena): Update dynamic patch to handle config key rename.
(u-boot-am335x-evm): New variable.
(u-boot-am335x-boneblack): Build with modified am335x-evm config.
(u-boot-novena): Fix typo in description.
* gnu/bootloader/u-boot.scm (u-boot-beaglebone-black-bootloader): Use
u-boot-am335x-boneblack.
* gnu/packages/patches/u-boot-fix-mkimage-header-verification.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-29 12:35:04 +02:00
9d3053819d
file-systems: Support the 'no-atime' flag.
...
* guix/build/syscalls.scm (MS_NOATIME): New variable.
* gnu/build/file-systems.scm (mount-flags->bit-mask): Support it.
* doc/guix.texi (File Systems): Document it and add cross-references to
the relevant documentation.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-04-29 12:19:03 +02:00
4c89dc354e
gnu: font-public-sans: Adjust synopsis and description.
...
* gnu/packages/fonts.scm (font-public-sans)[synopsis, description]:
Adjust.
2019-04-29 09:53:06 +02:00
245aa0e344
gnu: Add font-public-sans.
...
* gnu/packages/fonts.scm (font-public-sans): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-29 09:51:41 +02:00
772bcb1cf0
installer: Fix typo in docstring.
...
* gnu/installer/newt/wifi.scm (draw-scanning-page): Fix typo in docstring.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-29 09:48:40 +02:00
c31bec88a8
gnu: diffoscope: Update to 114.
...
* gnu/packages/package-management (diffoscope): Update to 114.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-29 09:33:55 +02:00
b901b72545
services: slim: Honor the value of slim from slim-configuration.
...
Previously setting the slim field in slim-configuration would have no effect.
* gnu/services/xorg.scm (slim-shepherd-service): Remove unused let binding for
slim. Use (slim-configuration-slim config) instead of the default slim.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-29 09:33:55 +02:00
fdb513a704
gnu: Fix missing bison package in (gnu packages algebra).
...
This fixes a regression introduced in
6d3896b9fc
2019-04-28 23:58:13 +01:00
81aa6c721b
gnu: direnv: Change to the go-build-system.
...
The go-build-system is slightly more appropriate, and switching resolves an
issue with combining the 'unpack phase from the gnu-build-system, and the
'setup-go-environment from the go-build-system. With both of those phases
creating a directory, the first-subdirectory call at the end of the 'unpack
phase can return different values depending on the filesystem ordering.
* gnu/packages/shellutils.scm (direnv)[source]: Use the git repository, as
this works better with the go-build-system.
[build-system]: Change to the go-build-system.
[arguments]: Adjust for the go-build-system.
[native-inputs]: Remove go.
2019-04-28 23:13:31 +01:00
d779de1817
installer: Tell the user where the config file is.
...
* gnu/installer/newt/final.scm (strip-prefix): New procedure.
(run-config-display-page): Add a sentence showing where the config file
is stored.
2019-04-28 22:57:08 +02:00
ada4aeb068
installer: Fix handling of user password mismatches.
...
Previously, if we had a password mismatch, the 'password' field would
end up containing a <user> record instead of the actual password.
* gnu/installer/newt/user.scm (confirm-password): Make TRY-AGAIN
optional and adjust docstring.
(run-user-add-page): Move 'confirm-password' call one level higher.
2019-04-28 22:57:07 +02:00
0e8e963d73
installer: User accounts can now have a "real name."
...
* gnu/installer/newt/user.scm (run-user-add-page): Add #:real-name. Add
a label and entry for the real name and initialize the 'real-name' field
of the <user> record.
* gnu/installer/final.scm (create-user-database): Set the 'comment'
field of the <user-account> record.
2019-04-28 22:57:07 +02:00
43c1c44a11
installer: User can have a "real name".
...
* gnu/installer/user.scm (<user>)[real-name]: New field.
(users->configuration)[use->sexp]: Turn it into a 'comment' field.
2019-04-28 22:57:07 +02:00
ed5a5d38cf
installer: Improve layout of the partitioning page.
...
Previously the "listbox" would be unnecessarily high, leaving too little
space for the German translation of the text above.
* gnu/installer/newt/partition.scm (run-disk-page): Increase
#:info-textbox-width and pass #:listbox-height.
2019-04-28 22:57:07 +02:00
113bc08172
installer: Add 'nss-certs' to the networking services.
...
Fixes <https://bugs.gnu.org/35469 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
* gnu/installer/services.scm (%system-services): Add service for
'nss-certs', with 'recommended?' set to #t.
2019-04-28 22:57:07 +02:00
1d9fcdacf9
installer: Recommended services are pre-selected.
...
* gnu/installer/services.scm (<system-service>)[recommended?]: New
field.
* gnu/installer/newt/services.scm (run-desktop-environments-cbt-page):
Pass #:selection to 'run-checkbox-tree-page', computed from the
'recommended?' field of each service.
(run-networking-cbt-page): Likewise.
2019-04-28 22:57:07 +02:00
7253c2b629
installer: Add #:selection parameter to 'run-checkbox-tree-page'.
...
* gnu/installer/newt/page.scm (%none-selected): New variable.
(run-checkbox-tree-page): Add #:selection.
[fill-checkbox-tree]: Honor it.
2019-04-28 22:57:07 +02:00
a4ae05fb8b
vm-image: Add 'nss-certs' to the global package set.
...
* gnu/system/examples/vm-image.tmpl (packages): Add NSS-CERTS.
2019-04-28 22:57:06 +02:00
e0f3a4feb5
gnu: Fix typo.
...
* gnu/packages/algebra.scm (giac-xcas): Fix typo.
2019-04-28 22:16:03 +02:00
7fc0e3dbbb
gnu: giac-xcas: Rename to "giac" to match upstream name.
...
* gnu/packages/algebra.scm (giac): New variable.
(giac-xcas): Deprecate.
2019-04-28 21:41:57 +02:00
6d3896b9fc
gnu: giac-xcas: Add inputs.
...
* gnu/packages/algebra.scm (giac-xcas)[inputs]: Add glpk, libsamplerate, bison
and flex.
2019-04-28 21:35:39 +02:00
9f73ac242c
gnu: giac-xcas: Fix documentation.
...
* gnu/packages/algebra.scm (giac-xcas): Use a single output. Fix licensing
issues in documentation.
Xcas expects documentation to be located at a fixed location, not compatible
with a "doc" output.
2019-04-28 21:35:37 +02:00
0e09c099cb
gnu: linux-libre: Update to 5.0.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.10.
(%linux-libre-hash): Update hash.
2019-04-28 13:35:43 -04:00
e9ef345508
gnu: linux-libre@4.19: Update to 4.19.37.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.37.
(%linux-libre-4.19-hash): Update hash.
2019-04-28 13:34:57 -04:00
4943ddf878
gnu: linux-libre@4.14: Update to 4.14.114.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.114.
(%linux-libre-4.14-hash): Update hash.
2019-04-28 13:34:06 -04:00
a7dad69a32
gnu: linux-libre@4.9: Update to 4.9.171.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.171.
2019-04-28 13:33:36 -04:00
4987e2b3b1
gnu: linux-libre@4.4: Update to 4.4.179.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.179.
2019-04-28 13:32:54 -04:00
bf949323b9
gnu: Add cloud-utils.
...
* gnu/packages/admin.scm (cloud-utils): New variable.
2019-04-28 17:37:17 +01:00
cee06123c8
gnu: Remove unused module reference.
...
* gnu/services/web.scm: Remove reference to (gnu packages guile).
2019-04-28 16:05:57 +02:00
6b1c7ac8ed
gnu: hypre: Unconditionally return #T from build phases.
...
* gnu/packages/maths.scm (hypre)[arguments]: Use INVOKE and unconditionally
return #T from build phases.
2019-04-28 16:05:57 +02:00
9cd82b1c9d
gnu: jacal: Unconditionally return #T from configure phase.
...
* gnu/packages/maths.scm (jacal)[arguments]: Use INVOKE in configure phase.
2019-04-28 16:05:57 +02:00
32d5360f43
gnu: z3: Unconditionally return #T from build phases.
...
* gnu/packages/maths.scm (z3)[arguments]: Use INVOKE in build phases.
2019-04-28 16:05:56 +02:00
cb6f44d4e4
gnu: atlas: Always return #T from build phases.
...
* gnu/packages/maths.scm (atlas)[arguments]: Always return #T from build
phases; use INVOKE.
2019-04-28 16:05:56 +02:00
1ec1782106
gnu: make-blis: Always return #T from configure phase.
...
* gnu/packages/maths.scm (make-blis)[arguments]: Use INVOKE.
2019-04-28 16:05:56 +02:00
7055407770
gnu: kdevplatform: Use INVOKE.
...
* gnu/packages/kde.scm (kdevplatform)[arguments]: Use INVOKE and return #T
unconditionally.
2019-04-28 16:05:53 +02:00
7d62fa206b
Merge branch 'staging'
2019-04-28 14:45:35 +02:00
c5db31d414
gnu: gnome-shell: Add gdk-pixbuf+svg to inputs.
...
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Add gdk-pixbuf+svg.
2019-04-27 22:57:03 +02:00
3153ca9d5f
gnu: r-rhtslib: Fix build.
...
* gnu/packages/bioinformatics.scm (r-rhtslib)[arguments]: Add
"--no-staged-install" to configure flags.
2019-04-27 22:45:02 +02:00
fc3ebc3023
gnu: r-ggbio: Fix build.
...
* gnu/packages/bioinformatics.scm (r-ggbio)[arguments]: Add build phase to
patch out typo.
2019-04-27 20:45:21 +02:00
d22d790409
gnu: r-sjplot: Update to 2.6.3.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.6.3.
[propagated-inputs]: Add r-bayestestr, r-insight, and r-performance.
2019-04-27 20:45:20 +02:00
711a2f0611
gnu: Add r-performance.
...
* gnu/packages/cran.scm (r-performance): New variable.
2019-04-27 20:45:20 +02:00
c4568c5c64
gnu: Add r-bayestestr.
...
* gnu/packages/cran.scm (r-bayestestr): New variable.
2019-04-27 20:45:20 +02:00
7dbdbbfd6e
installer: Add missing i18n in the partitioning pages.
...
* gnu/installer/newt/partition.scm (run-scheme-page): Add missing 'G_'
for ITEMS.
(run-partioning-page): Likewise.
(run-partition-page): Move misplaced call to 'G_'.
2019-04-27 19:31:50 +02:00
61e41d5132
gnu: guix: Update to 0c329bf.
...
* gnu/packages/package-management.scm (guix): Update to 0c329bf
2019-04-27 19:31:50 +02:00
e821a6406a
gnu: ocaml-qtest: Update to 2.9.
...
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.9.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
2019-04-27 19:03:43 +02:00
bcc718be03
gnu: ocaml-ezjsonm: Update to 1.1.0.
...
* gnu/packages/ocaml.scm (ocaml-ezjsonm): Update to 1.1.0.
2019-04-27 19:03:28 +02:00
58c3118f59
gnu: ocaml-re: Update to 1.9.0.
...
* gnu/packages/ocaml.scm (ocaml-re): Update to 1.9.0.
(ocaml-uri): Fix build.
2019-04-27 19:03:25 +02:00
e58d05c32e
gnu: ocaml-csv: Update to 2.2.
...
* gnu/packages/ocaml.scm (ocaml-csv): Update to 2.2.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
2019-04-27 19:03:21 +02:00
f9caa17b63
gnu: ocaml-spawn: Update to 0.13.0.
...
* gnu/packages/ocaml.scm (ocaml-spawn): Update to 0.13.0.
2019-04-27 19:03:14 +02:00
b8e2bd4fc8
gnu: knot: Fix typos.
...
* gnu/services/dns.scm: Fix typos.
2019-04-27 15:56:35 +02:00
ef1f1ca742
gnu: bubblewrap: Fix Texinfo markup in description.
...
Fixes a regression introduced in
7ecd1761a2
2019-04-27 15:41:36 +02:00
6e0521eeed
vm-image: Allow for password-less sudo.
...
* gnu/system/examples/vm-image.tmpl (sudoers-file): New field.
2019-04-27 15:08:18 +02:00
ff587e0fc0
vm-image: Mention 'info guix' in the MOTD.
...
* gnu/system/examples/vm-image.tmpl (vm-image-motd): Mention 'info guix'.
2019-04-27 15:08:18 +02:00
5df29aad3b
vm-image: Add a font to the global profile.
...
* gnu/system/examples/vm-image.tmpl (packages): Add FONT-BITSTREAM-VERA,
for use by xfce-terminal, IceCat, etc.
2019-04-27 15:08:17 +02:00
ea2acfe98a
doc: Update bit about SSH in the VM.
...
* doc/guix.texi (Running Guix in a VM): Remove mentions of 'lsh-server';
mention 'openssh-service-type' and add a cross-reference.
* gnu/system/examples/vm-image.tmpl (services): Add a commented-out line
for 'openssh-service-type'.
2019-04-27 15:08:17 +02:00
6cd7b1be7e
gnu: knot: Add configuration fields.
...
* gnu/services/dns.scm (knot-zone-configuration)[zonefile-load]
[journal-content, max-journal-usage, max-journal-depth, max-zone-size]:
New fields.
(knot-zone-config): Serialize them.
* doc/guix.texi (DNS Services): Document them.
2019-04-27 13:02:31 +02:00
bdb372a647
gnu: gajim: Update to 1.1.3.
...
* gnu/packages/messaging.scm (gajim): Update to 1.1.3.
2019-04-27 12:07:50 +02:00
bf98373fcd
gnu: python-nbxmpp: Update to 0.6.10.
...
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.10.
2019-04-27 12:07:50 +02:00
ea9d634c7e
gnu: r-quadprog: Update to 1.5-6.
...
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-6.
2019-04-27 12:03:13 +02:00
bea8205936
gnu: r-caret: Update to 6.0-84.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-84.
2019-04-27 12:03:13 +02:00
0d32caeeed
gnu: r-fpc: Update to 2.1-11.2.
...
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.2.
2019-04-27 12:03:13 +02:00
9fbbe2623f
gnu: r-rngtools: Update to 1.3.1.1.
...
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.1.
2019-04-27 12:03:13 +02:00
a563e75ea4
gnu: r-mass: Update to 7.3-51.4.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.4.
2019-04-27 12:03:13 +02:00
aa97fbfa95
gnu: r-boot: Update to 1.3-22.
...
* gnu/packages/statistics.scm (r-boot): Update to 1.3-22.
2019-04-27 12:03:13 +02:00
071390aa09
gnu: r-sf: Update to 0.7-4.
...
* gnu/packages/cran.scm (r-sf): Update to 0.7-4.
2019-04-27 12:03:13 +02:00
1bbfca18c5
gnu: r-classint: Update to 0.3-3.
...
* gnu/packages/cran.scm (r-classint): Update to 0.3-3.
[propagated-inputs]: Add r-kernsmooth.
2019-04-27 12:03:13 +02:00
7b18fac45b
gnu: r-survey: Update to 3.36.
...
* gnu/packages/cran.scm (r-survey): Update to 3.36.
[propagated-inputs]: Add r-mitools.
2019-04-27 12:03:13 +02:00
779174e4bb
gnu: r-ordinal: Update to 2019.4-25.
...
* gnu/packages/cran.scm (r-ordinal): Update to 2019.4-25.
2019-04-27 12:03:13 +02:00
9c4f118bf7
gnu: Add r-mitools.
...
* gnu/packages/cran.scm (r-mitools): New variable.
2019-04-27 12:03:10 +02:00
747c8f2a20
gnu: mozjs-38: Fix URI.
...
* gnu/packages/gnuzilla.scm (mozjs-38): Fix URI.
2019-04-27 11:59:49 +02:00
816014d39d
gnu: wine-staging: Update to 4.7.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.7.
* gnu/packages/wine.scm (wine-staging): Update to 4.7.
2019-04-27 11:33:23 +02:00
435551f0fa
services: knot: Fix configuration file generation.
...
Fixes a regression introduced in
92eb600f8a
2019-04-27 00:19:41 +02:00
aea1a42e00
system: Add boot file systems to /etc/fstab.
...
* gnu/system.scm (essential-services): Pass FSTAB-SERVICE-TYPE the list
of file systems that match 'file-system-needed-for-boot?'.
2019-04-27 00:11:52 +02:00
74685a4369
services: file-system: Filter what goes to /etc/fstab.
...
Fixes a longstanding issue whereby, due to our long fstab that included
pseudo file systems like cgroup mounts, graphical file managers would
display all of these. Initially reported at
<https://lists.gnu.org/archive/html/help-guix/2017-11/msg00084.html >.
* gnu/services/base.scm (file-system-fstab-entries): New procedure.
(file-system-service-type): Use it to extend FSTAB-SERVICE-TYPE.
2019-04-27 00:11:52 +02:00
b05290380f
gnu: ocaml-ppxlib: Update to 0.6.0.
...
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.6.0.
(dune): Update to 1.9.1.
2019-04-26 23:57:00 +02:00
cf338cc305
gnu: ocaml-migrate-parsetree: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree)[properties]: New
field.
2019-04-26 23:35:24 +02:00
b7ebcb043c
gnu: ocaml-ppx-expect: Update to 0.12.0.
...
* gnu/packages/ocaml.scm (ocaml-ppx-inline-test): Update to 0.12.0.
(ocaml-ppx-expect): Update to 0.12.0.
2019-04-26 23:35:19 +02:00
ee33e415e7
gnu: ocaml-frontc: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-frontc)[properties]: New field.
2019-04-26 23:35:17 +02:00
d4857001a1
gnu: ocaml-ppx-tools: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-ppx-tools)[properties]: New field.
2019-04-26 23:35:15 +02:00
f08b235dab
gnu: ocaml-lwt-log: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-lwt-log)[properties]: New field.
2019-04-26 23:35:13 +02:00
c949a4eb1f
gnu: ocaml-ppx-tools-versioned: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-ppx-tools-versioned)[properties]: New
field.
2019-04-26 23:35:11 +02:00
d9faae6254
gnu: ocaml-compiler-libs: Add upstream name.
...
* gnu/packages/ocaml.scm (ocaml-compiler-libs)[properties]: New field.
2019-04-26 23:35:08 +02:00
1e5937c8c0
gnu: ocaml-ppx-derivers: Update to 1.2.1.
...
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): Update to 1.2.1.
2019-04-26 23:35:03 +02:00
1e8439de27
gnu: ocaml-pcre: Update to 7.4.1.
...
* gnu/packages/ocaml.scm (ocaml-pcre): Update to 7.4.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
2019-04-26 23:34:59 +02:00
acb98ad956
gnu: ocaml-stringext: Update to 1.5.0.
...
* gnu/packages/ocaml.scm (ocaml-stringext): Update to 1.5.0.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
2019-04-26 23:34:54 +02:00
09cd92a983
gnu: ocaml-zarith: Update to 1.7.
...
* gnu/packages/ocaml.scm (ocaml-zarith): Update to 1.7.
[source]: Use git-fetch.
2019-04-26 23:34:41 +02:00
eddfd11d70
gnu: ocaml-topkg: Update to 1.0.0.
...
* gnu/packages/ocaml.scm (ocaml-topkg): Update to 1.0.0.
2019-04-26 23:34:31 +02:00
853af25ecd
gnu: ocaml-mtime: Update to 1.1.0.
...
* gnu/packages/ocaml.scm (ocaml-mtime): Update to 1.1.0.
2019-04-26 23:34:26 +02:00
3f59ecfcb5
gnu: ocaml-qcheck: Update to 0.9.
...
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.9.
2019-04-26 23:34:10 +02:00
152cbc3ca5
gnu: r-with-tests: Update to 3.6.0.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 3.6.0.
[arguments]: Adjust "build-reproducibly" phase.
[native-inputs]: Add a texlive-union consisting of texlive-fonts-amsfonts,
texlive-fonts-ec, texlive-latex-amsfonts, texlive-latex-base,
texlive-latex-fancyvrb, texlive-latex-graphics, texlive-latex-hyperref,
texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-upquote, and
texlive-latex-url.
2019-04-26 21:00:41 +02:00
7f55904558
gnu: Add umi-tools.
...
* gnu/packages/bioinformatics.scm (umi-tools): New variable.
2019-04-26 21:00:37 +02:00
8caa458953
gnu: gdm: Install a placeholder desktop entry.
...
This fixes <https://bugs.gnu.org/35068 >.
* gnu/packages/gnome.scm (gdm)[arguments]: Add a phase that installs a
placeholder desktop entry file.
Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-26 13:57:39 -04:00
8597aecb84
gnu: MPD: Update to 0.21.8.
...
* gnu/packages/mpd.scm (mpd): Update to 0.21.8.
2019-04-26 13:36:59 -04:00
936a4f4371
gnu: mame: Update to 0.209.
...
* gnu/packages/emulators.scm (mame): Update to 0.209.
2019-04-26 18:54:16 +02:00
e379d1b5ef
gnu: dns: Fix configuration formating.
...
* gnu/services/dns.scm (format-string-list): Fix formating of lists with
only one symbol.
2019-04-26 18:37:48 +02:00
273ba2552b
gnu: ocaml-integers: Update to 0.3.0.
...
* gnu/packages/ocaml.scm (ocaml-integers): Update to 0.3.0.
2019-04-26 18:29:02 +02:00
12c3f62ab2
gnu: ocaml-easy-format: Update to 1.3.1.
...
* gnu/packages/ocaml.scm (ocaml-easy-format): Update to 1.3.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
2019-04-26 18:28:58 +02:00
7e49538483
gnu: ocaml-fpath: Update to 0.7.2.
...
* gnu/packages/ocaml.scm (ocaml-fpath): Update to 0.7.2.
2019-04-26 18:28:54 +02:00
b858c5ac39
gnu: ocaml-ssl: Update to 0.5.7.
...
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.7.
2019-04-26 18:28:49 +02:00
44b8507d5e
gnu: ocaml-octavius: Update to 1.2.1.
...
* gnu/packages/ocaml.scm (ocaml-octavius): Update to 1.2.1.
2019-04-26 18:28:46 +02:00
22cd6a1d4f
gnu: ocaml-result: Update to 1.3.
...
* gnu/packages/ocaml.scm (ocaml-result): Update to 1.3.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
2019-04-26 18:28:42 +02:00
5cb40adaa2
gnu: ocaml-utop: Update to 2.3.0.
...
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.3.0.
2019-04-26 18:28:25 +02:00
d7b05620a9
vm-image: Remove NetworkManager & co. and add the DHCP client.
...
* gnu/system/examples/vm-image.tmpl (services): Remove wpa-supplicant,
cups-pk-helper, and NetworkManager. Add DHCP-CLIENT-SERVICE-TYPE.
2019-04-26 18:24:55 +02:00
a9a0790376
gnu: xfdesktop: Stick a Guix logo in the background image.
...
* gnu/packages/xfce.scm (xfdesktop)[source](modules, snippet): New
fields.
[arguments]: New field.
[native-inputs]: Add INKSCAPE and IMAGEMAGICK.
2019-04-26 18:23:56 +02:00
94e1439800
services: cups-pk-helper: Export.
...
* gnu/services/desktop.scm (cups-pk-helper-service-type): Export.
2019-04-26 18:07:46 +02:00
1ac6c33cae
vm-image: Use the actual file name of the current file.
...
* gnu/system/examples/vm-image.tmpl (this-file): Use 'basename' and
'current-source-location'.
2019-04-26 16:47:11 +02:00
98f035482f
installer: Actually reboot when the user presses "Reboot."
...
* gnu/installer/newt/final.scm (run-install-success-page): Return
'success.
* gnu/installer.scm (installer-program): Check the result of the 'final
step and reboot upon success.
2019-04-26 14:19:36 +02:00
9529f7850e
installer: Take 'guix system init' exit code into account.
...
This allows the installer to distinguish success from failure, and also
ensures the shell that runs 'guix system init' exits upon completion.
* gnu/installer/utils.scm (run-shell-command)[pause]: New procedure.
Add "exec" before COMMAND in the script. Guard 'invoke' call and handle
'invoke-error?'. Add call to 'pause' on completion.
* gnu/installer/final.scm (install-system): Remove 'false-if-exception'.
2019-04-26 14:19:36 +02:00
6c849cdb98
installer: Run wrapped program with 'execl', not 'system'.
...
'system' invokes /bin/sh, which is certainly not needed here.
* gnu/installer.scm (installer-program): Use 'execl', not 'system'.
2019-04-26 14:19:36 +02:00
538b99f31f
system: Provide a new VM image configuration.
...
* gnu/system/examples/vm-image.tmpl: Rewrite.
* doc/guix.texi (Running Guix in a VM): Adjust accordingly.
2019-04-26 14:19:36 +02:00
504a0fc636
accounts: Always honor the configured user account shell.
...
Starting from commit 0ae735bcc8
2019-04-26 14:19:36 +02:00
7342923d98
gnu: wgetpaste: Add and use wget input.
...
This package has but one purpose; late binding's overkill.
* gnu/packages/wget.scm (wgetpaste)[arguments]: Add ‘use-inputs’ phase.
[inputs]: Add wget.
2019-04-26 04:36:02 +02:00
4f7db08571
gnu: hcxdumptool: Update to 5.1.4.
...
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.4.
2019-04-26 00:58:16 +02:00
03c443ce8f
gnu: hcxtools: Update to 5.1.4.
...
* gnu/packages/networking.scm (hcxtools): Update to 5.1.4.
2019-04-26 00:58:06 +02:00
55036ddc9a
gnu: soundtouch: Update to 2.1.1.
...
* gnu/packages/audio.scm (soundtouch): Update to 2.1.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
Remove patches.
* gnu/packages/patches/soundtouch-CVE-2018-1000223.patch,
gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2019-04-26 00:56:32 +02:00
88507036f6
gnu: tmux-xpanes: Update to 4.1.0.
...
* gnu/packages/tmux.scm (tmux-xpanes): Update to 4.1.0.
2019-04-26 00:54:00 +02:00
9be92490b5
gnu: librepcb: Update to 0.1.1.
...
* gnu/packages/engineering.scm (librepcb): Update to 0.1.1.
2019-04-26 01:58:30 +05:30
92eb600f8a
gnu: knot-service: Add includes field in configuration.
...
* gnu/services/dns.scm (knot-configuration): Add includes field.
(verify-knot-configuration): Check includes content.
(knot-config-file): Serialize includes.
* doc/guix.texi (DNS Services): Document it.
2019-04-25 21:44:55 +02:00
ca3cf2d58e
gnu: tmux: Update to 2.9.
...
* gnu/packages/tmux.scm (tmux): Update to 2.9.
2019-04-25 13:57:09 -04:00
b68aff1f05
gnu: certbot: Add support for manual plugin.
...
* gnu/services/certbot.scm (certificate-configuration): Add challenge,
auth-hook and cleanup-hook fields.
(certbot-command): Use them.
* doc/guix.texi (Certificate Services): Document them.
2019-04-25 19:46:18 +02:00
c3634df2a4
gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependent
...
packages.
This fixes <https://bugs.gnu.org/27462 >.
* gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit)
(ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith)
(ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext)
(ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result)
(ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv)
(ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring)
(ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl)
(ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath)
(ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar)
(ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64)
(ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib)
(ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver)
(ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv)
(ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare)
(ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib)
(ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv)
(ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate)
(ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value)
(ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail)
(ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message)
(ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re)
(ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel)
(ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core)
(ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async)
(ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables.
* guix/build-system/ocaml.scm (default-ocaml4.02)
(default-ocaml4.02-findlib, package-with-ocaml4.02)
(strip-ocaml4.02-variant): Remove variables.
2019-04-25 19:01:31 +02:00
6e49426761
gnu: ocamlify: Downgrade to 0.0.1.
...
Version 0.0.2 cannot be built with the latest OCaml, whereas this
version does. This is also the version used by opam.
* gnu/packages/ocaml.scm (ocamlify): Downgrade to 0.0.1.
[arguments]: Do not use ocaml-4.02.
2019-04-25 19:01:05 +02:00
0705f389d1
gnu: Remove ocaml-jbuilder.
...
Jbuilder is deprecated and replaced by dune.
* gnu/packages/ocaml.scm (ocaml-jbuilder): Remove variable.
(ocaml-zed, ocaml-utop): Use dune-build-system.
2019-04-25 19:00:48 +02:00
bbe9915b30
gnu: bap: Update to 1.6.0.
...
* gnu/packages/ocaml.scm (bap): Update to 1.6.0.
(ocaml-frontc): Update to 3.4.1.
(ocaml-fileutils, ocaml-cstruct, ocaml-hex, ocaml-ezjsonm, ocaml-uri):
New variables.
(ocaml4.02-fileutils, ocaml4.02-cstruct, ocaml4.02-hex,
ocaml4.02-ezjsonm, ocaml4.02-uri): Remove variables.
2019-04-25 19:00:25 +02:00
ce9a30e6f4
gnu: Add ocaml-bigarray-compat.
...
* gnu/packages/ocaml.scm (ocaml-bigarray-compat): New variable.
2019-04-25 18:59:55 +02:00
cd8dce8ac4
gnu: gnome-shell: Add gdk-pixbuf+svg to inputs.
...
Fixes <https://bugs.gnu.org/34124 >.
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Add gdk-pixbuf+svg.
[arguments]: Add the lib directory of gdk-pixbuf+svg to the LD_LIBRARY_PATH
wrapper of the gnome-shell executable.
2019-04-25 15:30:07 +02:00
92e1e0ec4b
gnu: fltk: Update to 1.3.5.
...
* gnu/packages/fltk.scm (fltk): Update to 1.3.5.
2019-04-25 14:59:16 +02:00
187122b902
installer: Ask for confirmation of the user passwords.
...
* gnu/installer/newt/user.scm (run-user-add-page): Add #:name and
#:home-directory and honor them. Add call to 'confirm-password'.
2019-04-25 12:23:54 +02:00
8f2b7e3cb4
installer: Ask for confirmation of the root password.
...
* gnu/installer/newt/user.scm (confirm-password): New procedure.
(run-root-password-page): Add call to 'confirm-password'.
2019-04-25 12:23:54 +02:00
453c976501
installer: Use FLAG-PASSWORD for the encryption passphrase confirmation.
...
* gnu/installer/newt/partition.scm (prompt-luks-passwords)
<password-confirm-page>: Pass #:input-flags to 'run-input-page'.
2019-04-25 12:23:54 +02:00
4728806185
gnu: Add python-yubikey-manager and python2-yubikey-manager.
...
* gnu/packages/security-token.scm (python-yubikey-manager)
(python2-yubikey-manager): New variables.
2019-04-24 21:08:39 -07:00
5297e97599
gnu: Add python-fido2 and python2-fido2.
...
* gnu/packages/security-token.scm (python-fido2, python2-fido2): New
variables.
2019-04-24 21:08:39 -07:00
41553c90e4
gnu: Add public-suffix-list.
...
* gnu/packages/dns.scm (public-suffix-list): New variable.
2019-04-24 21:08:39 -07:00
5f7d151c77
gnu: Add libu2f-host.
...
* gnu/packages/security-token.scm (libu2f-host): New variable.
2019-04-24 21:08:39 -07:00
404037f83d
gnu: Add python-pyscard and python2-pyscard.
...
* gnu/packages/security-token.scm (python-pyscard, python2-pyscard): New
variables.
2019-04-24 21:08:38 -07:00
968e86bd93
gnu: Add python-pyfakefs and python2-pyfakefs.
...
* gnu/packages/patches/python-pyfakefs-remove-bad-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
* gnu/packages/check.scm (python-pyfakefs, python2-pyfakefs): New
variables.
2019-04-24 21:08:36 -07:00
0406434baa
gnu: bind: Update to 9.12.4-P1 [fixes CVE-2018-5743, CVE-2019-6467].
...
* gnu/packages/dns.scm (isc-bind): Update to 9.12.4-P1.
[source]: Add patch.
[inputs]: Add python and python-ply.
* packages/patches/bind-fix-unused-pk11-ecc-constants.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-04-25 04:42:17 +02:00
9b19734c50
gnu: r-yamss: Fix typo in description.
...
* gnu/packages/bioconductor.scm (r-yamss)[description]: Fix typo.
2019-04-25 04:42:16 +02:00
61985d650b
gnu: python-dill: Fix typo in description.
...
* gnu/packages/python-xyz.scm (python-dill)[description]: Fix typo.
2019-04-25 04:42:16 +02:00
52beae7b8a
gnu, guix: Yearly ritual purging of the filesystems.
...
* gnu/packages/android.scm (android-ext4-utils)[synopsis]: Fix ‘file
system’ spelling.
* gnu/packages/disk.scm (rmlint)[synopsis, description]: Likewise.
* gnu/packages/golang.scm (go-github-com-kr-fs)[synopsis, description]:
Likewise & edit for grammar.
* gnu/packages/ipfs.scm (gx, go-ipfs)[description]: Likewise.
* /gnu/packages/java.scm (java-commons-vfs)[synopsis]: Likewise.
* gnu/packages/linux.scm (fuseiso)[description]: Likewise.
(genext2fs)[synopsis, description]: Likewise.
* gnu/packages/package-management.scm (libostree)[description]: Likewise.
* gnu/packages/python-xyz.scm (python-requests-file)[description]:
Likewise & mark up.
* gnu/packages/rails.scm (ruby-with-advisory-lock)[description]:
Likewise.
* gnu/packages/ruby.scm (ruby-rerun)[description]: Likewise.
* guix/build/go-build-system.scm (setup-go-environment)<docstring>:
Likewise.
* guix/store/deduplication.scm (get-temp-link)<docstring>: Likewise.
2019-04-25 04:42:16 +02:00
7ecd1761a2
gnu: bubblewrap: Edit description.
...
* gnu/packages/virtualization.scm (bubblewrap)[description]: Mark up & edit.
2019-04-25 04:42:16 +02:00
ac32a451fa
gnu: perl-filesys-notify-simple: Edit description.
...
* gnu/packages/perl.scm (perl-filesys-notify-simple)[description]: Mark up & edit.
2019-04-25 04:42:16 +02:00
ddfd529cc9
gnu: libimobiledevice: Edit description.
...
* gnu/packages/libusb.scm (libimobiledevice)[description]: Fix grammar & spelling.
2019-04-25 04:42:16 +02:00
2cffa2f240
gnu: libsvm: Update to 3.23.
...
* gnu/packages/machine-learning.scm (libsvm): Update to 3.23.
2019-04-25 04:42:16 +02:00
5ed720976a
gnu: openfst: Update to 1.7.2.
...
* gnu/packages/machine-learning.scm (openfst): Update to 1.7.2.
2019-04-25 04:42:16 +02:00
ecb33b87aa
vm: Adjust FAT serial number code to 32-bit Guile.
...
On 32-bit systems, 'string-hash' would raise an out-of-range exception
when the second argument was 2^32.
* gnu/build/vm.scm (make-iso9660-image): Pass 2^32 - 1 to 'string-hash'.
2019-04-25 00:45:35 +02:00
e7c7b73320
installer: Preserve order of user accounts.
...
* gnu/installer/newt/user.scm (run-user-page): Add call to 'reverse'.
2019-04-25 00:45:35 +02:00
5be7aecd14
vm: 'system-disk-image' no longer requires the OS to define the "/" file system.
...
Previously 'guix system disk-image' would fail if the OS didn't define a
"/" file system, even though it actually overrides that file system.
* gnu/system/vm.scm (system-disk-image)[root-uuid]: Turn into a
procedure.
Call 'root-uuid' on a variant of OS with a "/" file system and inherit
from that.
2019-04-25 00:45:35 +02:00
91a7c4998f
installer: Ask for the root account password.
...
Fixes <https://bugs.gnu.org/35399 >.
* gnu/installer/newt/user.scm (run-root-password-page): New procedure.
* gnu/installer/user.scm (users->configuration): Filter out the "root"
account.
* gnu/installer/final.scm (create-user-database): Set 'uid' field in
'user-account' form.
2019-04-25 00:45:35 +02:00
399c31d40a
installer: 'run-input-page' has a new #:input-flags parameter.
...
* gnu/installer/newt/page.scm (run-input-page): Add #:input-flags and
honor it.
2019-04-25 00:45:35 +02:00
898677ed17
installer: Ask for user password and initialize /etc/shadow.
...
Partly fixes <https://bugs.gnu.org/35399 >.
* gnu/installer/user.scm (<user>)[password]: New field.
* gnu/installer/final.scm (%seed): New variable.
(integer->alphanumeric-char, random-string)
(create-user-database): New procedures.
(install-system): Call 'create-user-database'.
* gnu/installer/newt/final.scm (run-install-shell): Add #:users and pass
it to 'install-system'.
(run-final-page): Pass #:users to 'run-install-shell'.
* gnu/installer/newt/user.scm (run-user-add-page): Add password entry.
Pass its result as the 'password' field of <user>.
2019-04-25 00:45:34 +02:00
3cc033f2a8
installer: Add missing 'G_' for networking message.
...
* gnu/installer/newt/network.scm (wait-technology-powered): Add missing
'G_'.
2019-04-25 00:45:34 +02:00
01ac0e6be1
system: Add guile-readline and guile-colorized to %BASE-PACKAGES.
...
This adds pretty much nothing to the system closure size.
* gnu/system.scm (%base-packages): Add GUILE-READLINE and
GUILE-COLORIZED.
2019-04-25 00:45:34 +02:00
55111549e8
install: Add node name in Castellano.
...
* gnu/system/install.scm (%installation-node-names): Add "es".
2019-04-25 00:45:34 +02:00
9374cbd1fb
services: fprintd: Provide polkit policy.
...
* gnu/services/authentication.scm (fprintd-service-type)[extensions]: Add
polkit-service-type.
2019-04-24 22:21:35 +02:00
190dc09e95
gnu: r-xtable: Update to 1.8-4.
...
* gnu/packages/statistics.scm (r-xtable): Update to 1.8-4.
2019-04-24 17:04:54 +02:00
3a9991e4dd
gnu: r-dbplyr: Update to 1.4.0.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.0.
2019-04-24 17:04:54 +02:00
3cc8f66e95
gnu: r-testthat: Update to 2.1.1.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.1.1.
2019-04-24 17:04:54 +02:00
a300ab685a
gnu: r-igraph: Update to 1.2.4.1.
...
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.1.
2019-04-24 17:04:54 +02:00
8fc6188e4f
gnu: r-pamr: Update to 1.56.1.
...
* gnu/packages/cran.scm (r-pamr): Update to 1.56.1.
2019-04-24 17:04:54 +02:00
a059791f4e
gnu: r-ggforce: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-ggforce): Update to 0.2.2.
2019-04-24 17:04:54 +02:00
88a39cc6f5
gnu: r-rms: Update to 5.1-3.1.
...
* gnu/packages/cran.scm (r-rms): Update to 5.1-3.1.
2019-04-24 17:04:53 +02:00
f1c1bbc1a6
gnu: r-genetics: Update to 1.3.8.1.2.
...
* gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.2.
2019-04-24 17:04:53 +02:00
378b5f4d1e
gnu: r-fields: Update to 9.7.
...
* gnu/packages/cran.scm (r-fields): Update to 9.7.
2019-04-24 17:04:53 +02:00
90325bb182
gnu: r-splitstackshape: Update to 1.4.8.
...
* gnu/packages/cran.scm (r-splitstackshape): Update to 1.4.8.
2019-04-24 17:04:53 +02:00
d6fc8fe1fa
gnu: r-emmeans: Update to 1.3.4.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.4.
2019-04-24 17:04:53 +02:00
902905cc5b
gnu: r-sys: Update to 3.2.
...
* gnu/packages/cran.scm (r-sys): Update to 3.2.
2019-04-24 17:04:48 +02:00
5f88d81fa4
gnu: zynaddsubfx: Update to 3.0.5.
...
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.5.
2019-04-24 15:02:05 +02:00
cda12aa949
gnu: padthv1: Update to 0.9.7.
...
* gnu/packages/music.scm (padthv1): Update to 0.9.7.
2019-04-24 14:56:08 +02:00
b19392f4f4
gnu: samplv1: Update to 0.9.7.
...
* gnu/packages/music.scm (samplv1): Update to 0.9.7.
2019-04-24 14:55:59 +02:00
e39c4800f0
gnu: synthv1: Update to 0.9.7.
...
* gnu/packages/music.scm (synthv1): Update to 0.9.7.
2019-04-24 14:55:53 +02:00
e4ea33cb2a
gnu: drumkv1: Update to 0.9.7.
...
* gnu/packages/music.scm (drumkv1): Update to 0.9.7.
2019-04-24 14:47:03 +02:00
5e4ac4de79
gnu: pdfpc: Update to 4.3.2.
...
* gnu/packages/pdf.scm (pdfpc): Update to 4.3.2.
2019-04-24 14:26:02 +02:00
21e67d060b
gnu: gphoto2: Update to 2.5.20.
...
* gnu/packages/photo.scm (gphoto2): Update to 2.5.20.
2019-04-24 14:09:02 +02:00
e48c3dd990
gnu: rawtherapee: Update to 5.6.
...
* gnu/packages/photo.scm (rawtherapee): Update to 5.6.
[inputs]: Add librsvg.
2019-04-24 13:48:02 +02:00
a50452508e
gnu: youtube-dl: Update to 2019.04.24.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.04.24.
2019-04-24 13:05:02 +02:00
1c0dd73092
gnu: emacs-ledger-mode: Use ledger as input.
...
* gnu/packages/finance.scm (emacs-ledger-mode)[inputs]: Add ledger.
[arguments]: Patch path to ledger executable.
2019-04-24 11:12:02 +02:00
28341601b3
gnu: xl2tpd: Don't use NAME in source URI.
...
* gnu/packages/vpn.scm (xl2tpd)[source]: Hard-code NAME.
2019-04-24 01:47:48 +02:00
14ccd8f883
gnu: xl2tpd: Update to 1.3.14.
...
* gnu/packages/vpn.scm (xl2tpd): Update to 1.3.14.
2019-04-24 01:47:48 +02:00
7067d5f654
gnu: ristretto: Don't use NAME in source URI.
...
* gnu/packages/xfce.scm (ristretto)[source]: Hard-code NAME.
2019-04-24 01:47:48 +02:00
177d1af038
gnu: ristretto: Update to 0.8.4.
...
* gnu/packages/xfce.scm (ristretto): Update to 0.8.4.
2019-04-24 01:47:48 +02:00
b990f986f4
gnu: inxi-minimal: Update to 3.0.33-1.
...
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.33-1.
2019-04-24 01:47:48 +02:00
ca983a2fc1
gnu: python2-sh: Fix build.
...
* gnu/packages/python-xyz.scm (python-sh): Fix build error with Python 2 due
to failing tests.
2019-04-24 00:47:23 +02:00
06e5c3af8b
services: connman: Redirect output to a log file.
...
* gnu/services/networking.scm (connman-shepherd-service): Pass
#:log-file to 'make-forkexec-constructor'.
2019-04-23 23:44:36 +02:00
37da4fbe15
Merge branch 'master' into staging
2019-04-23 19:43:59 +02:00
e01bd1a674
gnu: libseccomp: Update to 2.4.1.
...
* gnu/packages/linux.scm (libseccomp): Update to 2.4.1.
2019-04-23 19:39:03 +02:00
af1d777e6c
gnu: maim: Update to 5.5.3.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.5.3.
2019-04-23 19:39:03 +02:00
8949b64004
gnu: fluidsynth: Update to 2.0.5.
...
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.5.
2019-04-23 19:39:03 +02:00
a18581a02d
gnu: libpng: Replace with 1.6.37 [security fixes].
...
This fixes CVE-2018-14048, CVE-2018-14550, and CVE-2019-7317.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng-1.6.37): New public variable.
2019-04-23 19:39:03 +02:00
30023aa670
gnu: xf86-video-intel: Update to 2.99.917-13.6afed33.
...
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-13.6afed33.
2019-04-23 19:39:02 +02:00
9694b44e3b
gnu: notmuch-addrlookup-c: Update to 9.
...
* gnu/packages/mail.scm (notmuch-addrlookup-c): Update to 9.
[arguments]: Remove PREFIX from #:make-flags.
2019-04-23 22:06:45 +05:30
74ee98eed4
gnu: ocaml-ppx-hash: Fix typo in description.
...
* gnu/packages/ocaml.scm (ocaml-ppx-hash)[description]:
Fix non-functional typo.
2019-04-23 18:14:49 +02:00
97f4ff6d29
gnu: libedit: Update to 20190324-3.1.
...
* gnu/packages/libedit.scm (libedit): Update to 20190324-3.1.
2019-04-23 18:13:05 +02:00
ef93b55e42
gnu: lynis: Update to 2.7.4.
...
* gnu/packages/admin.scm (lynis): Update to 2.7.4.
2019-04-23 18:13:05 +02:00
7b7abb07c2
gnu: libmwaw: Don't use NAME in source URI.
...
* gnu/packages/libreoffice.scm (libmwaw)[source]: Hard-code NAME.
2019-04-23 18:13:05 +02:00
9148ed7cd2
gnu: libodfgen: Don't use NAME in source URI.
...
* gnu/packages/libreoffice.scm (libodfgen)[source]: Hard-code NAME.
2019-04-23 18:13:05 +02:00
9a4f6ceb10
gnu: libvisio: Don't use NAME in source URI.
...
* gnu/packages/libreoffice.scm (libvisio)[source]: Hard-code NAME.
2019-04-23 18:13:05 +02:00
cb4c99ceb9
gnu: libpagemaker: Don't use NAME in source URI.
...
* gnu/packages/libreoffice.scm (libpagemaker)[source]: Hard-code NAME.
2019-04-23 18:13:05 +02:00
44aaf1e00a
gnu: libmwaw: Update to 0.3.15.
...
* gnu/packages/libreoffice.scm (libmwaw): Update to 0.3.15.
2019-04-23 18:13:05 +02:00
be59c48d15
gnu: perceptualdiff: Don't use unstable tarball.
...
It's still broken by freeimage, unfortunately.
* gnu/packages/image.scm (perceptualdiff)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-04-23 18:13:05 +02:00
645b6c7fc7
gnu: gifsicle: Use HTTPS.
...
* gnu/packages/image.scm (gifsicle)[source, home-page]: Use HTTPS.
2019-04-23 18:13:04 +02:00
5c46e1dda8
gnu: gifsicle: Update to 1.92.
...
* gnu/packages/image.scm (gifsicle): Update to 1.92.
2019-04-23 18:13:04 +02:00
86b8869fff
linux-container: Remove '%containerized-shepherd-service' hack.
...
This hack worked around a defect in the Shepherd 0.5.0 and is no longer
needed.
* gnu/services/shepherd.scm (%containerized-shepherd-service): Remove.
* gnu/system/linux-container.scm (container-essential-services): Don't
use it.
2019-04-23 16:38:12 +02:00
051b279fd0
services: account: Make 'user-homes' a one-shot service.
...
* gnu/system/shadow.scm (account-shepherd-service): Add 'one-shot?'
field. Return #t from 'start'.
2019-04-23 16:38:12 +02:00
95ef8b85b1
services: shepherd: Support one-shot services.
...
* gnu/services/shepherd.scm (<shepherd-service>)[one-shot?]: New field.
(shepherd-service-file): Pass #:one-shot? to the <service> constructor.
* doc/guix.texi (Shepherd Services): Document it.
2019-04-23 16:38:11 +02:00
9fb1ca0808
gnu: shepherd: Update to 0.6.0.
...
* gnu/packages/admin.scm (shepherd): Update to 0.6.0. Use
"mirror://gnu" as the URL base.
[properties]: Remove.
2019-04-23 16:38:11 +02:00
93c5c6d164
gnu: spirv-headers: Update to 1.3.7.
...
* gnu/packages/vulkan.scm (spirv-headers): Update to 1.3.7.
2019-04-23 11:03:56 +02:00
b2e417f3f1
gnu: glslang: Update to 7.11.3188.
...
* gnu/packages/vulkan.scm (glslang): Update to 7.11.3188.
2019-04-23 11:03:56 +02:00
83126aa8a9
gnu: emacs-disk-usage: Update to 1.3.3.
...
* gnu/packages/emacs-xyz.scm (emacs-disk-usage): Update to 1.3.3.
2019-04-23 10:43:54 +02:00
519177ad41
install: Pass "quiet" to the kernel.
...
This is a followup to 5582aa8e31
2019-04-23 00:40:50 +02:00
7611074f67
installer: Run 'guix system init' with the right locale.
...
* gnu/installer/utils.scm (run-shell-command): Add #:locale and honor it.
* gnu/installer/newt/final.scm (run-install-shell): Add 'locale'
parameter; pass it to 'install-system'.
(run-final-page): Obtain locale from RESULT; pass it to 'run-install-shell'.
* gnu/installer/final.scm (install-system): Add 'locale' parameter; pass
it to 'run-shell-command'.
2019-04-23 00:34:47 +02:00
5582aa8e31
system: Change default kernel-arguments to '("quiet").
...
This improves the readability of the boot process, especially when using full
disk encryption where you're required to enter the passphrase at a particular
point.
* gnu/system.scm (<operating-system>)[kernel-arguments]: Change the default to
'("quiet").
* doc/guix.texi (operating-system Reference): Document this change.
2019-04-22 22:18:00 +01:00
fa61900705
gnu: openssh: Update to 8.0p1.
...
* gnu/packages/ssh.scm (openssh): Update to 8.0p1.
[source]: Remove patch.
* gnu/packages/patches/openssh-CVE-2018-20685.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-04-22 15:02:16 -04:00
8c064d01a0
gnu: minetest: Simplify 'freetype' input specification.
...
* gnu/packages/games.scm (minetest)[inputs]: Eliminate an unnecessary
use of Guile's '@' syntax to reference the 'freetype' package.
2019-04-22 15:02:13 -04:00
ab0c796b67
gnu: minetest-data: Update to 5.0.1.
...
* gnu/packages/games.scm (minetest-data): Update to 5.0.1.
[description]: Fix typo.
2019-04-22 15:02:11 -04:00
df129041dd
gnu: maxima: Return #t from custom 'check' phase.
...
* gnu/packages/maths.scm (maxima)[arguments]: Use invoke in the custom
check phase.
2019-04-22 14:58:24 -04:00
233eb6c8fe
gnu: ghc-haskell-lexer: Update to 1.0.2.
...
* gnu/packages/haskell.scm (ghc-haskell-lexer): Update to 1.0.2.
2019-04-22 18:08:18 +02:00
a263a97687
gnu: python-redis: Update to 3.2.1.
...
* gnu/packages/databases.scm (python-redis): Update to 3.2.1.
2019-04-22 15:20:34 +02:00
4dfdcbf5fe
gnu: libabigail: Don't use NAME in source URI.
...
* gnu/packages/elf.scm (libabigail)[source]: Hard-code NAME.
2019-04-22 15:03:59 +02:00
29cc115436
gnu: libabigail: Update to 1.6.
...
* gnu/packages/elf.scm (libabigail): Update to 1.6.
2019-04-22 15:03:52 +02:00
1f2f358b69
gnu: python-sqlalchemy: Update to 1.3.3.
...
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.3.
2019-04-22 14:55:58 +02:00
15357dd7a9
gnu: nsd: Update to 4.1.27.
...
* gnu/packages/dns.scm (nsd): Update to 4.1.27.
2019-04-22 14:53:48 +02:00
ba18ea5f41
gnu: python-pyodbc: Update to 4.0.26.
...
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.26.
2019-04-22 14:25:14 +02:00
fe74e6ac6b
gnu: memcached: Update to 1.5.13.
...
* gnu/packages/databases.scm (memcached): Update to 1.5.13.
2019-04-22 14:17:00 +02:00
7f221c0e0d
gnu: translate-shell: Update to 0.9.6.10.
...
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.10.
2019-04-22 14:12:37 +02:00
6dc4dceba5
gnu: linux-libre: Update to 5.0.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.9.
(%linux-libre-hash): Update hash.
2019-04-22 07:08:08 -04:00
e81148a11d
gnu: linux-libre@4.19: Update to 4.19.36.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.36.
(%linux-libre-4.19-hash): Update hash.
2019-04-22 07:06:57 -04:00
689b628025
gnu: linux-libre@4.14: Update to 4.14.113.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.113.
(%linux-libre-4.14-hash): Update hash.
2019-04-22 07:05:55 -04:00
cfb7aee078
gnu: linux-libre@4.9: Update to 4.9.170.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.170.
2019-04-22 07:04:04 -04:00
54b41d2d71
gnu: Add pass-otp.
...
* gnu/packages/password-utils.scm (pass-otp): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2019-04-22 10:28:43 +01:00
5554155649
gnu: password-store: Allow external packages to provide extensions.
...
* gnu/packages/password-utils.scm (password-store): Add mechanism for
providing pass extensions in separate packages.
[arguments]: Add patch-system-extension-dir phase.
[native-search-paths]: Add PASSWORD_STORE_SYSTEM_EXTENSION_DIR.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2019-04-22 10:28:43 +01:00
c60b15cc62
gnu: python-dill: Update to 0.2.9.
...
* gnu/packages/python-xyz.scm (python-dill): Update to 0.2.9.
2019-04-22 02:36:21 +02:00
1d3c78036f
gnu: python-serpent: Tweak description.
...
* gnu/packages/python-xyz.scm (python-serpent)[description]:
Use @code{} and edit slightly.
2019-04-22 02:36:21 +02:00
fa9d14ac50
gnu: python-serpent: Update to 1.28.
...
* gnu/packages/python-xyz.scm (python-serpent): Update to 1.28.
[native-inputs]: Add python-attrs & python-pytz.
2019-04-22 02:36:21 +02:00
441e6d936f
gnu: python-openpyxl: Update to 2.6.2.
...
* gnu/packages/python-xyz.scm (python-openpyxl): Update to 2.6.2.
2019-04-22 02:36:20 +02:00
654563ec83
gnu: perl-text-csv: Fix build.
...
* gnu/packages/perl.scm (perl-text-csv)[source]: Update URL.
2019-04-22 02:36:20 +02:00
8dafe89593
gnu: parallel: Update to 20190422.
...
* gnu/packages/parallel.scm (parallel): Update to 20190422.
2019-04-22 02:36:20 +02:00
5df6934cdb
gnu: eid-mw: Update to 4.4.16.
...
* gnu/packages/security-token.scm (eid-mw): Update to 4.4.16.
2019-04-22 02:32:13 +02:00
50b01dcf3c
gnu: dbacl: Don't use NAME in source URI.
...
* gnu/packages/textutils.scm (dbacl)[source]: Hard-code NAME.
2019-04-22 02:32:13 +02:00
3671cbe51a
gnu: youtube-dl: Update to 2019.04.17.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.04.17.
2019-04-22 02:32:12 +02:00
34a169010e
gnu: dav1d: Update to 0.2.2.
...
* gnu/packages/video.scm (dav1d): Update to 0.2.2.
2019-04-22 02:32:12 +02:00
f465562b10
gnu: foo2zjs: Update to 20190413.
...
* gnu/packages/cups.scm (foo2zjs): Update to 20190413.
2019-04-22 02:32:12 +02:00
56a4858210
gnu: supertuxkart: Simplify unbundling and unbundle enet.
...
* gnu/packages/games.scm (supertuxkart)[source](snippet): Delete "lib/enet".
Remove "CMakeList.txt" substitution.
[arguments]<#:configure-flags>: Add "-DUSER_SYSTEM_GLEW=TRUE" and
"-DUSE_SYSTEM_ENET=TRUE".
<#:phases>: Delete.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2019-04-21 22:50:22 +01:00
60af1822d4
gnu: supertuxkart: Update to 1.0.
...
* gnu/packages/games.scm (supertuxkart): Update to 1.0.
[inputs]: Add openssl.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2019-04-21 22:50:22 +01:00
f9fee46ffb
gnu: Add alex4.
...
* gnu/packages/games.scm (alex4): New variable.
2019-04-21 10:36:19 -04:00
d61dcb1b47
gnu: Add dumb-allegro4.
...
* gnu/packages/music.scm (dumb-allegro4): New variable.
2019-04-21 10:36:19 -04:00
72385c34ba
gnu: Add dumb.
...
* gnu/packages/music.scm (dumb): New variable.
2019-04-21 10:36:19 -04:00
33023baac8
installer: Fix skip-to-step issue.
...
When trying to jump to the first step, DONE-STEPS ends-up being null, which
fails the matching condition.
* gnu/installer/steps.scm (skip-to-step): Split matching conditions to handle
the empty DONE-STEPS case properly.
2019-04-21 12:12:11 +02:00
9729b6ea2f
gnu: direnv: Remove go references from output.
...
In the long run, it would be good to move direnv across to the
go-build-system, and update the package, but these changes do succeed in
reducing the closure size a lot.
Thanks to Tanguy Le Carrour for raising this issue on guix-devel.
* gnu/packages/shellutils.scm (direnv)[arguments]: Include the
remove-go-references phase from the go-build-system.
[inputs,native-inputs]: Move all inputs to native-inputs, as these are no
longer referenced in the output.
2019-04-21 10:38:30 +01:00
dc01978288
services: fprintd: Use define-configuration.
...
* gnu/services/authentication.scm: Use define-configuration in fprintd.
2019-04-21 10:40:19 +02:00
17ae31b7a8
gnu: r-hdf5r: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.2.0.
2019-04-21 10:20:56 +02:00
dbcd503c46
gnu: guile-parted: Update to 0.0.1.
...
* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.1.
2019-04-21 09:48:26 +02:00
442a11f68f
gnu: guile-newt: Update to 0.0.1.
...
* gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.1.
2019-04-21 09:45:36 +02:00
1b0b1651b1
gnu: mtools: 'mformat' initializes boot sector before writing it.
...
This is the last bit fixing <https://bugs.gnu.org/35283 >.
Previously, 'mformat' (used by 'grub-mkrescue') would pass uninitialized
bytes to write(2), leading to non-deterministic FAT image contents.
This patch fixes that.
* gnu/packages/patches/mtools-mformat-uninitialized.patch: New file.
* gnu/packages/mtools.scm (mtools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-04-21 00:51:19 +02:00
5502fbd7fd
gnu: valgrind: Add 3.15.0.
...
* gnu/packages/valgrind.scm (valgrind-3.15): New variable.
2019-04-21 00:51:19 +02:00
605815023c
vm: Use a fixed FAT serial number for 'efi.img' in ISO images.
...
Partly fixes <https://bugs.gnu.org/35283 >.
* gnu/build/vm.scm (make-iso9660-image): Set the
'GRUB_FAT_SERIAL_NUMBER' environment variable.
2019-04-21 00:51:18 +02:00
52b5fe5bcf
gnu: grub: 'grub-mkrescue' honors 'GRUB_FAT_SERIAL_NUMBER'.
...
* gnu/packages/patches/grub-efi-fat-serial-number.patch: New file.
* gnu/packages/bootloaders.scm (grub)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-04-21 00:51:18 +02:00
6901b9248e
vm: Reset file timestamps of the EFI image in ISO images.
...
Partly fixes <https://bugs.gnu.org/35283 >.
* gnu/build/vm.scm (make-iso9660-image): Set the 'SOURCE_DATE_EPOCH'
environment variable.
2019-04-21 00:51:18 +02:00
833480cc1f
vm: Reset file timestamps in ISO images.
...
Partly fixes <https://bugs.gnu.org/35283 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
* gnu/build/vm.scm (make-iso9660-image): Pass "-volume_date
all_file_dates =1".
2019-04-21 00:51:18 +02:00
7859191210
install: Pass "modprobe.blacklist=radeon".
...
* gnu/system/install.scm (installation-os)[kernel-arguments]: New field.
2019-04-21 00:51:18 +02:00
a3e6cf9876
gnu: Add git-lfs.
...
* gnu/packages/version-control.scm (git-lfs): New variable.
2019-04-20 16:40:35 -04:00
2ca3fdc2db
gnu: shishi: Make shishi keys and database administrator-modifiable.
...
Fixes <https://bugs.gnu.org/30109 >.
* gnu/packages/kerberos.scm (shishi)[arguments]<#:configure-flags>:
Add --with-key-dir, --with-db-dir.
<#:phases>[disable-automatic-key-generation]: New phase.
2019-04-20 17:17:56 +02:00
afabb9ecfb
gnu: ibus-libpinyin: Add missing runtime input.
...
* gnu/packages/ibus.scm (ibus-libpinyin)[inputs]: Add python-pygobject.
2019-04-20 12:33:10 +02:00
446130300e
gnu: libpinyin: Update to 2.3.0.
...
* gnu/packages/ibus.scm (libpinyin): Update to 2.3.0.
2019-04-20 12:26:12 +02:00
811eae11cd
gnu: ibus-libpinyin: Update to 1.11.0.
...
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.11.0.
2019-04-20 12:26:12 +02:00
b2c6b467f3
gnu: ibus: Update to 1.5.20.
...
* gnu/packages/ibus.scm (ibus): Update to 1.5.20.
[arguments]: Remove make-flags; remove "--disable-python2" from
configure-flags; add build phase "patch-python-target-directories".
[inputs]: Replace intltool with gnu-gettext.
2019-04-20 12:26:08 +02:00
73326e742d
gnu: Add emacs-robot-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-robot-mode): New variable.
2019-04-19 20:27:27 -04:00
5b84c12022
gnu: Add python-robotframework-lint.
...
* gnu/packages/python-xyz.scm (python-robotframework-lint): New variable.
2019-04-19 20:27:27 -04:00
c0c64f175c
gnu: Add python-robotframework-sshlibrary.
...
* gnu/packages/python-xyz.scm (python-robotframework-sshlibrary): New variable.
2019-04-19 20:27:27 -04:00
b979028527
gnu: Add python-robotframework.
...
* gnu/packages/python-xyz.scm (python-robotframework): New variable.
* gnu/packages/patches/python-robotframework-honor-source-date-epoch.patch:
Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-04-19 20:27:27 -04:00
c0c0bb3823
gnu: Add python-rellu.
...
* gnu/packages/python-xyz.scm (python-rellu): New variable.
2019-04-19 20:27:27 -04:00
d5a998fa4c
gnu: Add python-pygithub.
...
* gnu/packages/python-xyz.scm (python-pygithub): New variable.
2019-04-19 20:27:21 -04:00
1e72a23d49
gnu: rct: Be more idiomatic.
...
* gnu/packages/cpp.scm (rct): Move the call to 'git-version' into the
package definition.
[source]: Explicitly include the source URI rather than using
'home-page'.
2019-04-19 15:14:54 -04:00
18f8770d58
gnu: linux-libre: Update to 5.0.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.8.
(%linux-libre-hash): Update hash.
2019-04-19 14:29:20 -04:00
5547653eb8
gnu: linux-libre@4.19: Update to 4.19.35.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.35.
(%linux-libre-4.19-hash): Update hash.
2019-04-19 14:27:42 -04:00
3f6b7699cd
gnu: linux-libre@4.14: Update to 4.14.112.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.112.
(%linux-libre-4.14-hash): Update hash.
2019-04-19 14:26:59 -04:00
a85190ddd0
gnu: linux-libre@4.9: Update to 4.9.169.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.169.
2019-04-19 14:26:19 -04:00
107850b391
gnu: Add r-styler.
...
* gnu/packages/cran.scm (r-styler): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-04-19 19:14:24 +02:00
2613bab627
gnu: grammalecte: Update to 1.0.1.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.0.1.
[source]: Update URL.
2019-04-19 18:37:22 +02:00
60ecacdeaa
gnu: linkchecker: Shorten patch file name.
...
This file name was too long for 'tar', as reported by 'guix lint'.
* gnu/packages/patches/linkchecker-mark-more-tests-that-require-the-network.patch:
Rename to...
* gnu/packages/patches/linkchecker-tests-require-network.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/web.scm (linkchecker)[source]: Likewise.
2019-04-19 17:46:40 +02:00
30a6cd7cd0
gnu: ocaml-dose3: Shorten patch file name.
...
This file name was too long for 'tar', as reported by 'guix lint'.
* gnu/packages/patches/ocaml-dose3-Add-unix-as-dependency-to-dose3.common-in-META.in.patch:
Rename to...
* gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ocaml.scm (ocaml-dose3)[source]: Adjust accordingly.
2019-04-19 17:46:40 +02:00
b24fd2c268
gnu: Add python-deprecated.
...
* gnu/packages/python-xyz.scm (python-deprecated): New variable.
2019-04-19 10:56:47 -04:00
13d825fcb6
gnu: Add python-scp.
...
* gnu/packages/python-xyz.scm (python-scp): New variable.
2019-04-19 10:56:47 -04:00
0f0a5ef9e8
gnu: Add python-bumpversion.
...
* gnu/packages/python-xyz.scm (python-bumpversion): New variable.
2019-04-19 10:56:46 -04:00
296da6e624
gnu: r-seurat: Update to 3.0.0.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
2019-04-19 15:38:47 +02:00
9b86fea05f
gnu: Add r-sctransform.
...
* gnu/packages/cran.scm (r-sctransform): New variable.
2019-04-19 15:38:46 +02:00
7015ae6881
gnu: r-urltools: Update to 1.7.3.
...
* gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
2019-04-19 14:43:34 +02:00
f0826fec46
gnu: r-rdpack: Update to 0.11-0.
...
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
2019-04-19 14:43:29 +02:00
5ac82ee33b
gnu: r-sdmtools: Update to 1.1-221.1.
...
* gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1.
2019-04-19 14:43:23 +02:00
3d60c80713
gnu: r-hardyweinberg: Update to 1.6.2.
...
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2.
2019-04-19 14:43:17 +02:00
8e79d820d0
gnu: r-clipr: Update to 0.6.0.
...
* gnu/packages/cran.scm (r-clipr): Update to 0.6.0.
2019-04-19 14:43:10 +02:00
664a6bc1a6
gnu: r-caret: Update to 6.0-83.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-83.
2019-04-19 14:42:51 +02:00
f00067dbfb
gnu: klick: Fix build with latest scons.
...
* gnu/packages/music.scm (klick)[arguments]: Patch "SConstruct" file to make
it compatible with the current version of scons.
2019-04-19 14:24:04 +02:00
35259437a7
gnu: perl-datetime-timezone: Fix missing timezone data.
...
I noticed this when using Sqitch, on systems without /usr/share/zoneinfo,
actions like deploy fail.
* gnu/packages/perl.scm (perl-datetime-timezone)[arguments]: Add 'patch-tzdata
phase to replace /usr/share/zoneinfo with a reference to the tzdata package.
[inputs]: Add the tzdata package.
2019-04-19 11:42:30 +01:00
f32164abd3
gnu: python2-send2trash: Don't inherit properties from python-send2trash.
...
This is a follow-up to commit 20b3fde776
2019-04-19 02:29:43 +02:00
20b3fde776
gnu: python-send2trash: Really delay Python2 variant.
...
This is a follow-up to commit 4782a06f45
2019-04-19 01:57:34 +02:00
cbeb891344
gnu: gpgme: Update to 1.13.0.
...
* gnu/packages/gnupg.scm (gpgme): Update to 1.13.0.
[source](patches): Remove.
2019-04-19 01:48:07 +02:00
4782a06f45
gnu: python-send2trash: Properly delay python2 variant.
...
* gnu/packages/python-xyz.scm (python2-send2trash)[properties]: Move from here ...
(python-send2trash)[properties]: ... to here.
2019-04-19 01:48:07 +02:00
c105e50903
gnu: python-service-identity: Update to 18.1.0.
...
* gnu/packages/python-crypto.scm (python-service-identity): Update to 18.1.0.
2019-04-19 01:48:07 +02:00
1adde06e4e
gnu: python-jsonschema: Update to 3.0.1.
...
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.0.1.
[arguments]: Adjust check phase for Twisted instead of nosetests.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-VCVERSIONER. Add
PYTHON-SETUPTOOLS-SCM and PYTHON-TWISTED.
[propagated-inputs]: Add PYTHON-ATTRS, PYTHON-PYRSISTENT and PYTHON-SIX.
(python2-jsonschema)[native-inputs, propagated-inputs]: Inherit.
2019-04-19 01:48:07 +02:00
ea43f0d581
gnu: Add python-pyrsistent.
...
* gnu/packages/python-xyz.scm (python-pyrsistent, python2-pyrsistent): New
public variables.
2019-04-19 01:48:07 +02:00
52ca1c4abf
gnu: python-twisted: Update to 19.2.0.
...
* gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.0.
[propagated-inputs]: Add PYTHON-PYHAMCREST.
2019-04-19 01:48:06 +02:00
919d80a0e0
gnu: python-automat: Update to 0.7.0.
...
* gnu/packages/python-xyz.scm (python-automat): Update to 0.7.0.
2019-04-19 01:48:06 +02:00
bcfb8fac36
gnu: python-m2r: Update to 0.2.1.
...
* gnu/packages/python-xyz.scm (python-m2r): Update to 0.2.1.
2019-04-19 01:48:06 +02:00
e95c983706
gnu: python-idna: Update to 2.8.
...
* gnu/packages/python-xyz.scm (python-idna): Update to 2.8.
2019-04-19 01:48:06 +02:00
431a0d26c8
gnu: python-hyperlink: Update to 19.0.0.
...
* gnu/packages/python-web.scm (python-hyperlink): Update to 19.0.0.
2019-04-19 01:48:06 +02:00
8142eadd40
gnu: python-zope-interface: Update to 4.6.0.
...
* gnu/packages/python-web.scm (python-zope-interface): Update to 4.6.0.
2019-04-19 01:48:06 +02:00
e6d782621a
gnu: xmlsec: Update to 1.2.28.
...
* gnu/packages/xml.scm (xmlsec): Update to 1.2.28.
2019-04-19 01:48:06 +02:00
bd5b6ce0d7
gnu: gnuastro: Update to 0.9.
...
* gnu/packages/astronomy.scm (gnuastro): Update to 0.9.
[native-inputs]: Add libtool.
2019-04-18 17:00:46 +03:00
5d450aba1f
gnu: nano: Update to 4.1.
...
* gnu/packages/nano.scm (nano): Update to 4.1.
2019-04-18 16:59:28 +03:00
fd6d2fd871
gnu: xpra: Update to 2.5.1.
...
* gnu/packages/xorg.scm (xpra): Update to 2.5.1.
2019-04-18 09:25:38 +02:00
e337061b3a
gnu: python: Disable failing tests for Python 2.
...
Fixes issue #35311 (see: https://bugs.gnu.org/35311 ).
* gnu/packages/python.scm (python-2.7)[make-flags]: Exclude the tests
test_urllib2_localnet and test_httplib.
* gnu/packages/python.scm (python-3.7)[make-flags]: Do not consider tests
exclusions inherited from the python2 package, which leaves Python 3 unchanged.
2019-04-18 00:07:33 -04:00
2ad0310615
gnu: rclone: Update to 1.47.0.
...
* gnu/packages/sync.scm (rclone): Update to 1.47.0.
2019-04-17 16:25:57 +02:00
afcd4438f8
gnu: console-setup: Update to 1.191.
...
* gnu/packages/xorg.scm (console-setup): Update to 1.191.
2019-04-17 15:54:54 +02:00
9015e63996
installer: Sort keyboard layouts according to language and translations.
...
Previously, we would always (1) put English first, and (2) sort the
other layouts based on their English description. This fixes both
issues.
* gnu/installer/newt/keymap.scm (sort-layouts)[layout<?]: New procedure.
[preferred]: New variable.
Partition according to both the 'name' and 'synopsis' fields. Sort both
the main layouts and the other layouts according to 'layout<?'.
2019-04-17 15:16:08 +02:00
818595a974
installer: Parse the 'shortDescription' field from xkeyboard-config.
...
* gnu/installer/keymap.scm (<x11-keymap-layout>)[synopsis]: New field.
(xkb-rules->models+layouts): Fill out the 'synopsis' field.
2019-04-17 15:13:31 +02:00
feaa83a377
installer: Translate keyboard layout names.
...
* gnu/installer.scm (installer-program)[installer-builder]: Call
'bindtextdomain' for "xkeyboard-config".
* gnu/installer/newt/keymap.scm (run-keymap-page): Add calls to
'gettext'.
2019-04-17 15:11:21 +02:00
14755829dc
installer: Sort items with 'string-locale<?'.
...
That way "Österreich" comes before "Schweiz" in a German locale (or
pretty much any sane locale.)
* gnu/installer/newt/page.scm (run-listbox-selection-page)[sort-listbox-items]:
Use 'string-locale<?' instead of 'string<=?'.
2019-04-17 11:53:54 +02:00
7cb7be17af
installer: Look up timezone name translations in "iso_3166-1".
...
* gnu/installer/newt/timezone.scm (run-timezone-page): Add call to
'gettext' for timezone names.
2019-04-17 11:53:54 +02:00
7837a57241
installer: Display language and territory names natively.
...
* gnu/installer.scm (installer-program): Add calls to 'bindtextdomain'.
* gnu/installer/newt/locale.scm (run-locale-page) <language, territory>:
Add calls to 'gettext'.
2019-04-17 11:53:54 +02:00
2d5867a213
installer: Change language as soon as it has been chosen.
...
Previously we'd call 'setlocale' only after the complete 'locale' step
had finished.
* gnu/installer/newt/locale.scm (run-language-page): Set the 'LANGUAGE'
environment variable before returning.
2019-04-17 11:53:54 +02:00
15dca289b8
gnu: guix: Update to b8b1e4d.
...
* gnu/packages/package-management.scm (guix): Update to b8b1e4d
2019-04-17 11:53:54 +02:00
3ad3c55842
installer: Desktop environment page now includes window managers.
...
* gnu/installer/services.scm (<system-service>)[snippet]: Change to be a
list of sexps and add default value.
[packages]: New field.
(%system-services): Adjust 'snippet' fields to be lists of sexps.
Add Openbox, awesome, i3, and ratpoison.
(system-services->configuration): Adjust 'snippet' handling. Honor
'packages' field.
2019-04-17 11:53:53 +02:00
a0e16bec37
gnu: guix: Don't pass '--with-libgcrypt-prefix'.
...
* gnu/packages/package-management.scm (guix)[arguments]: Remove
"--with-libgcrypt-prefix" from the configure flags.
2019-04-17 11:53:53 +02:00
a0158c26e2
gnu: awesome: Update home page.
...
* gnu/packages/wm.scm (awesome)[home-page]: Update.
2019-04-17 11:53:53 +02:00
0682f08463
services: fprintd: Fix service.
...
* gnu/services/authentication.scm (<fprintd-configuration>)[ntp]: Rename to...
[fprintd]: ...this.
(fprintd-dbus-service): New procedure.
(fprintd-service-type): Use it.
[default-value]: Add value.
2019-04-17 08:51:11 +02:00
38dd8b6058
gnu: gtkwave: Update to 3.3.100.
...
* gnu/packages/fpga.scm (gtkwave): Update to 3.3.100.
2019-04-17 06:15:36 +02:00
9043c1c561
gnu: qsynth: Update to 0.5.6.
...
* gnu/packages/audio.scm (qsynth): Update to 0.5.6.
2019-04-17 06:15:25 +02:00
11f38e9052
gnu: qjackctl: Update to 0.5.7.
...
* gnu/packages/audio.scm (qjackctl): Update to 0.5.7.
2019-04-17 06:15:17 +02:00
9a8aac1689
gnu: csound: Update to 6.12.2.
...
* gnu/packages/audio.scm (csound): Update to 6.12.2.
2019-04-17 06:15:09 +02:00
315d7dda35
gnu: gtkwave: Don't use NAME in source URI.
...
* gnu/packages/fpga.scm (gtkwave)[source]: Hard-code NAME.
2019-04-17 06:12:48 +02:00
9b15ef9350
gnu: calf: Update to 0.90.2.
...
* gnu/packages/audio.scm (calf): Update to 0.90.2.
2019-04-17 05:56:54 +02:00
067826abe3
gnu: the-legend-of-edgar: Update to 1.31.
...
* gnu/packages/games.scm (the-legend-of-edgar): Update to 1.31.
[inputs]: Use SDL 2 union.
[arguments]: Adjust accordingly.
2019-04-17 03:23:37 +02:00
564df7e584
gnu: dungeon-crawl-stone-soup: Update to 0.23.2.
...
* gnu/packages/games.scm (dungeon-crawl-stone-soup): Update to 0.23.2.
2019-04-17 03:23:37 +02:00
18061de9e1
gnu: minetest: Update to 5.0.1.
...
* gnu/packages/games.scm (minetest): Update to 5.0.1.
games
minetest
2019-04-17 03:22:57 +02:00
b24ada5110
gnu: snd: Update to 19.3.
...
* gnu/packages/audio.scm (snd): Update to 19.3.
2019-04-17 03:21:08 +02:00
0525864bdc
gnu: bennu-game-development-modules: Fix typos.
...
* gnu/packages/game-development.scm (bennu-game-development-modules)
[synopsis, description]: Fix ‘developement’ spelling.
2019-04-17 03:21:08 +02:00
881a3521f6
gnu: emacs-irony-mode: Fix typo in description.
...
* gnu/packages/emacs-xyz.scm (emacs-irony-mode)[description]:
Re-spell ‘resistent’.
2019-04-17 03:21:08 +02:00
4bee557d43
gnu: rubberband: Update to 1.8.2.
...
* gnu/packages/audio.scm (rubberband): Update to 1.8.2.
[arguments]: Add ‘skip-jni-installation’ phase.
2019-04-17 03:21:08 +02:00
f5961dd585
Merge branch 'master' into staging
2019-04-17 00:08:34 +02:00
e28ff04108
gnu: webkitgtk: Fix build on i686.
...
Fixes <https://bugs.gnu.org/35232 >.
* gnu/packages/patches/webkitgtk-sse2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/webkit.scm (webkitgtk-2.24)[source](patches): New field.
2019-04-16 23:39:49 +02:00
dd3266ecde
gnu: epiphany: Don't use NAME in source URI.
...
* gnu/packages/gnome.scm (epiphany)[source]: Hard-code NAME.
2019-04-16 22:40:04 +02:00
5b249625c1
gnu: eolie: Update to 0.9.60.
...
* gnu/packages/gnome.scm (eolie): Update to 0.9.60.
2019-04-16 22:40:04 +02:00
0e84987f50
gnu: docker, docker-cli: Update to 18.09.5.
...
* gnu/packages/docker.scm (%docker-version): Update to 18.09.5.
2019-04-16 22:40:04 +02:00
a1942cf094
gnu: avrdude: Use @acronym{} mark-up.
...
* gnu/packages/flashing-tools.scm (avrdude)[description]: Use it.
2019-04-16 22:40:04 +02:00
3b31d985c3
gnu: avrdude: Update to 6.3.
...
* gnu/packages/flashing-tools.scm (avrdude): Update to 6.3.
2019-04-16 22:40:04 +02:00
ff6807dc96
gnu: singular: Update to 4.1.2p1.
...
* gnu/packages/algebra.scm (singular): Update to 4.1.2p1.
2019-04-16 22:40:04 +02:00
bcfb110f6d
gnu: Add poedit.
...
* gnu/packages/poedit.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-04-16 22:32:27 +02:00
baa787745c
gnu: Add lucene++.
...
* gnu/packages/rdf.scm (lucene++): New variable.
2019-04-16 22:31:28 +02:00
fbd2a245f7
gnu: spice-gtk: Update to 0.36.
...
* gnu/packages/spice.scm (spice-gtk): Update to 0.36.
[inputs]: Add JSON-GLIB.
[arguments]: Disable session test.
2019-04-16 21:19:34 +02:00
a2d2c0bffe
gnu: spice-gtk: Propagate required inputs.
...
* gnu/packages/spice.scm (spice-gtk)[inputs]: Move GTK+, PIXMAN and OPENSSL ...
[propagated-inputs]: ... here.
(virt-viewer)[inputs]: Remove OPENSSL.
2019-04-16 21:19:34 +02:00
97b321a69c
gnu: http-parser: Update to 2.9.2.
...
* gnu/packages/web.scm (http-parser): Update to 2.9.2.
[source](snippet): Remove.
2019-04-16 21:19:34 +02:00
76a2430847
gnu: nginx: Update to 1.15.12.
...
* gnu/packages/web.scm (nginx): Update to 1.15.12.
2019-04-16 21:19:33 +02:00
75cc535986
gnu: python-dask: Update to 1.2.0.
...
* gnu/packages/python-xyz.scm (python-dask): Update to 1.2.0.
2019-04-16 21:19:33 +02:00
5e6c60077b
gnu: libqmi: Update to 1.22.4.
...
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.4.
2019-04-16 21:19:33 +02:00
ea9e91c70d
gnu: libmbim: Update to 1.18.2.
...
* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.2.
2019-04-16 21:19:33 +02:00
4863773eff
gnu: bridge-utils: Update to 1.6.
...
* gnu/packages/linux.scm (bridge-utils): Update to 1.6.
[source]: Update project URL.
2019-04-16 19:43:42 +02:00
c1469ab6db
gnu: apfs-fuse: Fix ’file system’ spelling.
...
* gnu/packages/file-systems.scm (apfs-fuse)[synopsis]: Fix spelling.
2019-04-16 19:43:42 +02:00
afab450c6f
gnu: lm-sensors: Update home page.
...
* gnu/packages/linux.scm (lm-sensors)[home-page]: Update.
2019-04-16 19:43:42 +02:00
b8b1e4d9a2
gnu: Add sbcl-log4cl, cl-log4cl, and ecl-log4cl.
...
* gnu/packages/lisp.scm (sbcl-log4cl, cl-log4cl, ecl-log4cl): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-16 19:21:39 +02:00
2933182732
gnu: sbcl-bordeaux-threads: Update to 0.8.6-1.5dce49f.
...
* gnu/packages/lisp.scm (sbcl-bordeaux-threads): Update to commit
5dce49f.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-16 19:12:52 +02:00
cfcec4abf6
gnu: Add emacs-ace-link.
...
* gnu/packages/emacs-xyz.scm (emacs-ace-link): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-16 19:09:55 +02:00
90b94761b6
gnu: http-parser: Fix build on i686-linux.
...
Fixes a regression introduced in
c11fcc6aa2
2019-04-16 17:48:46 +02:00
e31ece9751
gnu: slurm: Configure with a "standard" syslogdir.
...
Until now, we were using syslogdir=$prefix/etc, which did not exist.
Thus, commands would always fail like this:
$ guix environment --ad-hoc slurm --pure -- squeue -u $USER
squeue: error: s_p_parse_file: unable to status file /gnu/store/…-slurm-17.11.3/etc/slurm.conf: No such file or directory, retrying in 1sec up to 60sec
* gnu/packages/parallel.scm (slurm)[arguments]: Pass --sysconfdir.
2019-04-16 17:30:22 +02:00
698e91f0d0
gnu: Add libomp.
...
* gnu/packages/llvm.scm (libomp): New variable.
2019-04-16 17:30:22 +02:00
ece7731eac
gnu: guile-charting: Install .go files in the right place.
...
* gnu/packages/plotutils.scm (guile-charting)[source](modules, snippet):
New fields.
2019-04-16 17:30:21 +02:00
Ricardo Wurmus