8e92cfb101
gnu: Add vmpk.
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* gnu/packages/music.scm (vmpk): New variable.
2015-12-21 22:09:47 +01:00
bf76d7802c
gnu: Add drumstick.
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* gnu/packages/music.scm (drumstick): New variable.
2015-12-21 22:09:47 +01:00
ef9006451f
gnu: letsencrypt and acme: Update to 0.1.1.
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These packages should be updated together.
* gnu/packages/tls.scm (letsencrypt): Update to 0.1.1.
[source]: Use pypi-uri.
* gnu/packages/tls.scm (acme): Update to 0.1.1.
[source]: Use pypi-uri.
2015-12-21 14:35:58 -05:00
704989660f
gnu: ffmpeg: Update to 2.8.4.
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* gnu/packages/video.scm (ffmpeg): Update to 2.8.4.
2015-12-21 21:30:46 +02:00
d12717cba0
doc: Be more explicit in example of file-systems configuration.
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* gnu/system/examples/bare-bones.tmpl (file-systems): Change device
label.
* gnu/system/examples/desktop.tmpl (file-systems): Likewise.
2015-12-21 13:12:07 -05:00
dd81635571
doc: Explain significance of partition labels.
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* doc/guix.texi (Preparing for Installation): Point out relationship
between partition labels and the file-system configuration.
2015-12-21 12:53:12 -05:00
f0150f8724
gnu: grub: Add fix for CVE-2015-8730.
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* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
2015-12-21 12:33:55 -05:00
e2cd1d0fb9
gnu: Add GenomicRanges.
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* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
2015-12-21 17:22:16 +01:00
0e7d5560de
gnu: Add XVector.
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* gnu/packages/bioinformatics.scm (r-xvector): New variable.
2015-12-21 17:22:16 +01:00
bf7764b74f
gnu: Add GenomeInfoDb.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
2015-12-21 17:22:16 +01:00
78addcb0eb
gnu: Add IRanges.
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* gnu/packages/bioinformatics.scm (r-iranges): New variable.
2015-12-21 17:22:16 +01:00
7485129e4f
gnu: Add S4Vectors.
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* gnu/packages/bioinformatics.scm (r-s4vectors): New variable.
2015-12-21 17:22:16 +01:00
d29b25c490
gnu: Add BiocGenerics.
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* gnu/packages/bioinformatics.scm (r-biocgenerics): New variable.
2015-12-21 17:22:16 +01:00
9fba89e829
gnu: Add r-acsnminer.
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* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
2015-12-21 17:21:26 +01:00
9e47f30b08
gnu: Add r-gridextra.
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* gnu/packages/statistics.scm (r-gridextra): New variable.
2015-12-21 17:21:26 +01:00
b73751c8ff
gnu: Add r-gtable.
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* gnu/packages/statistics.scm (r-gtable): New variable.
2015-12-21 17:21:26 +01:00
77bdb276e9
gnu: Add r-rmarkdown.
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* gnu/packages/statistics.scm (r-rmarkdown): New variable.
* gnu/packages/haskell.scm: Do not select libxml2 from the xml module to
prevent circular package module imports.
2015-12-21 17:13:44 +01:00
4c1f2705b5
gnu: Add r-catools.
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* gnu/packages/statistics.scm (r-catools): New variable.
2015-12-21 17:13:44 +01:00
bb6d2dadf7
gnu: Add r-bitops.
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* gnu/packages/statistics.scm (r-bitops): New variable.
2015-12-21 17:13:44 +01:00
8406138b72
gnu: Add AdaptiveSparsity.
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* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
2015-12-21 16:05:38 +01:00
e22d4ca4c4
gnu: Add r-rcpparmadillo.
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* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
2015-12-21 16:05:37 +01:00
b15e47f9e6
gnu: Add armadillo.
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* gnu/packages/maths.scm (armadillo): New variable.
2015-12-21 15:47:40 +01:00
b1186502a4
doc: Fix outdated claim about CRAN importer.
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* doc/guix.texi: The CRAN importer no longer extracts information from
the HTML package description but from the package's DESCRIPTION file.
2015-12-21 15:25:10 +01:00
be036757bd
import: Drop empty list items.
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* guix/import/cran.scm (listify): Remove empty strings from result list.
2015-12-21 15:24:54 +01:00
0cb5bc2cff
http-client: Support basic authentication.
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* guix/http-client.scm (http-fetch): Add Authorization header to request
when the URI contains userinfo.
2015-12-21 15:24:44 +01:00
086e498bcf
gnu: Add libgit2.
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* gnu/packages/version-control.scm (libgit2): New variable.
2015-12-21 15:22:14 +01:00
02f35bb5a7
gnu: mafft: Update to 7.267.
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* gnu/packages/bioinformatics.scm (mafft): Update to 7.267.
[arguments]: Don't include mafft-homologs manpage.
[inputs]: Add gawk and grep.
[propagated-inputs]: Add coreutils.
2015-12-21 15:16:01 +01:00
1ef3f91a70
gnu: rxvt-unicode: Install the terminal capability data.
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This provides the necessary terminal capability data, which are required
by ncurses-based applications.
* gnu/packages/xdisorg.scm (rxvt-unicode)[native-inputs]: Add ncurses.
[arguments]: Set the destination of the terminfo files.
[native-search-path]: New field. Make them automatically available to
the user.
2015-12-21 13:35:34 +01:00
72d8b5baf4
gnu: msmtp: Update to 1.6.3.
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* gnu/packages/mail.scm (msmtp): Update to 1.6.3.
[inputs]: Add libsecret.
2015-12-21 09:36:15 +02:00
ec92806ae5
gnu: claws-mail: Update to 3.13.1.
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* gnu/packages/mail.scm (claws-mail): Update to 3.13.1.
2015-12-21 09:17:47 +02:00
56918e26cf
gnu: python-cython: Update to 0.23.4.
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* gnu/packages/python.scm (python-cython): Update to 0.23.4.
2015-12-21 06:55:13 +02:00
e99711af22
gnu: ruby: Update to 2.2.4.
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This version fixes CVE-2015-7551.
* gnu/packages/ruby.scm (ruby): Update to 2.2.4.
2015-12-20 22:40:53 -05:00
c5b303c57f
lint: The CPE name of GRUB is "grub2".
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Reported by Leo Famulari.
* guix/scripts/lint.scm (package-name->cpe-name): Add "grub".
2015-12-20 22:34:22 +01:00
724a7d9c74
packages: Remove now redundant graph procedures.
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These procedures are now redundant with those in (guix graph) and are no
longer used since commit a51cbecb
2015-12-20 22:34:22 +01:00
ccda8f7d7f
profiles: Honor search paths of propagated inputs.
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Fixes <http://bugs.gnu.org/22073 >.
Reported by Federico Beffa <beffa@ieee.org>.
* guix/profiles.scm (package->manifest-entry): Use
'package-transitive-native-search-paths' when computing
'search-paths' field.
* tests/profiles.scm ("package->manifest-entry, search paths"): New test.
2015-12-20 22:34:22 +01:00
aa8e051532
packages: Add 'package-transitive-native-search-paths'.
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* guix/packages.scm (package-transitive-native-search-paths): New
procedure.
* tests/packages.scm ("package-transitive-native-search-paths"): New
test.
2015-12-20 22:34:22 +01:00
54b7f63a72
gnu: offlineimap: Update to 6.6.0.
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* gnu/packages/mail.scm (offlineimap): Update to 6.6.0.
2015-12-20 21:39:18 +02:00
b5d47a5a53
gnu: gnupg: Update to 1.4.20.
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* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.20.
2015-12-20 20:07:31 +02:00
a4df575631
gnu: Add gnome-shell.
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* gnu/packages/gnome.scm (gnome-shell): New variable.
2015-12-20 18:59:22 +08:00
b645146f00
gnu: Add gnome-control-center.
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* gnu/packages/gnome.scm (gnome-control-center): New variable.
2015-12-20 18:59:22 +08:00
b96c42605b
gnu: Add gnome-bluetooth.
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* gnu/packages/gnome.scm (gnome-bluetooth): New variable.
2015-12-20 18:59:22 +08:00
8e1dd04f45
gnu: Add libgtop.
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* gnu/packages/gnome.scm (libgtop): New variable.
2015-12-20 18:59:21 +08:00
e682327976
gnu: Add colord-gtk.
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* gnu/packages/freedesktop.scm (colord-gtk): New variable.
2015-12-20 18:59:21 +08:00
6976e7d2ff
gnu: Add telepathy-logger.
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* gnu/packages/freedesktop.scm (telepathy-logger): New variable.
2015-12-20 18:59:21 +08:00
ff80b96378
gnu: tilda: Update to 1.3.1.
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* gnu/packages/terminals.scm (tilda): Update to 1.3.1.
2015-12-20 09:40:56 +02:00
604d20a251
gnu: Add tlsdate.
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* gnu/packages/ntp.scm (tlsdate): New variable.
2015-12-19 23:16:18 +01:00
04dc6c9992
gnu: mpv: Update to 0.14.0.
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* gnu/packages/video.scm (mpv): Update to 0.14.0.
2015-12-19 12:21:59 +08:00
599fd84227
gnu: mpv: Fix build by using pkg-config for smbclient.
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This is a followup to commit 710964d
2015-12-19 12:15:59 +08:00
7db0799dc9
gnu: agg: Update URLs.
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* gnu/packages/graphics.scm (agg)[source, home-page]: Add up-to-date
URLs.
2015-12-19 00:42:10 +01:00
3ac732715d
gnu: Use #:prefix when importing (guix licenses).
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This works around a problem with #:hide, whereby Guile would report
'zlib', 'openssl', and/or 'expat as colliding bindings at run time
despite the #:hide.
* gnu/packages/linux.scm: Use #:prefix license for (guix licenses).
* gnu/packages/haskell.scm: Likewise.
2015-12-19 00:34:00 +01:00
Ricardo Wurmus