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14128 Commits

Author SHA1 Message Date
Ben Woodcroft e03a515304
gnu: fasttree: Update to 2.1.9. 
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.9.
 2016-07-23 15:15:12 +10:00
Leo Famulari d227260d2f
Merge branch 'master' into core-updates 
Resolved conflicts:
* gnu/packages/scheme.scm: Conflict in import of (guix licenses). On master,
"#:hide (openssl)" was used. On core-updates, "#:select (some licenses)" was
used. The latter won the conflict.
* gnu/packages/version-control.scm (git)[arguments]: Whitespace conflict
in 'install-shell-completion.
 2016-07-22 18:58:31 -04:00
Leo Famulari d778fa5ff6
gnu: mozjs: Disable parallel build. 
* gnu/packages/gnuzilla.scm (mozjs)[arguments]: Add
'#:parallel-build? #f'.
 2016-07-22 17:44:31 -04:00
Alex Griffin 26ad4adb55
gnu: wesnoth: Update to 1.12.6. 
* gnu/packages/games.scm (wesnoth): Update to 1.12.6.
 2016-07-22 16:12:16 -04:00
Leo Famulari eddf9ae95e
gnu: opus: Update to 1.1.3. 
* gnu/packages/xiph.scm (opus): Update to 1.1.3.
 2016-07-22 14:02:13 -04:00
Leo Famulari 0f971a0475
gnu: Update URLs for sourceforge.net. 
* gnu/packages/audio.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/lxde.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
 2016-07-22 11:47:12 -04:00
Efraim Flashner 8ef843c711
gnu: aegis: Use 'modify-phases'. 
* gnu/packages/version-control.scm (aegis)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 2ce516d359
gnu: git: Use 'modify-phases'. 
* gnu/packages/version-control.scm (git)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner bf3c57ff2d
gnu: cssc: Use 'modify-phases'. 
* gnu/packages/version-control.scm (cssc)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 7c5a145414
gnu: subversion: Use 'modify-phases'. 
* gnu/packages/version-control.scm (subversion)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner ce84c924ac
gnu: subversion: Use https. 
* gnu/packages/version-control.scm (subversion)[source]: Use https.
[home-page]: Use https.
 2016-07-22 18:24:22 +03:00
Efraim Flashner aac42d7885
gnu: git-flow: Use 'modify-phases'. 
* gnu/packages/version-control.scm (git-flow)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 430e67a459
gnu: gnuplot: Update to upstream's re-release of 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the
version scheme of gnuplot to force an update.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 18d4d10f34
gnu: enlightenment: Update to 0.21.1. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.1.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 730c740e43
gnu: bazaar: Use 'modify-phases'. 
* gnu/packages/version-control.scm (bazaar)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Ricardo Wurmus f21403e2b6 gnu: icedtea-6: Generate keystore. 
* gnu/packages/java.scm (icedtea-6)[arguments]: Add phase
"install-keystore".
[native-inputs]: Add nss-certs.
 2016-07-22 17:10:25 +02:00
Ricardo Wurmus 9bc84dfea9 gnu: icedtea-6: Use modify-phases syntax. 
* gnu/packages/java.scm (icedtea-6)[arguments]: Use modify-phases
  syntax.
 2016-07-22 17:10:11 +02:00
Ricardo Wurmus 745ad37a78 gnu: nss-certs: Stop inheriting from nss package. 
* gnu/packages/certs.scm (nss-certs): Stop inheriting from nss package.
 2016-07-22 17:10:11 +02:00
Ludovic Courtès 3c2d03a2b9
doc: Add note on gender-neutral wording. 
Suggested by ng0 <ng0@we.make.ritual.n0.is>.

* doc/contributing.texi (Submitting Patches): Add @item regarding
gender-neutral wording.
 2016-07-22 15:26:49 +02:00
Danny Milosavljevic c2f0dc6ed1
gnu: Add ptpython and ptpython2. 
* gnu/packages/python.scm (ptpython, ptpython-2): New variables.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-22 15:06:05 +02:00
Ludovic Courtès 654c0d97c9
doc: Mention quoting and keywords. 
Suggested by Vincent Legoll <vincent.legoll@gmail.com>.

* doc/guix.texi (Defining Packages): Remove quasiquote in 'arguments'
example.  Mention quoting and keywords, with references to Guile's
manual.
 2016-07-22 14:40:54 +02:00
宋文武 782170c4f5
gnu: racket: Add more inputs. 
* gnu/packages/scheme.scm (racket)[inputs]: Add glu, gmp, libpng, libx11,
mesa, mpfr, openssl and unixodbc.  Replace libjpeg-8 with libjpeg and
gtk+-2 with gtk+.
 2016-07-22 19:09:20 +08:00
宋文武 e8c6811bf1
gnu: racket: Patch dynamically loaded libraries with absolute paths. 
* gnu/packages/scheme.scm (racket)[arguments]: Patch 'ffi-lib' calls to
absolute paths in 'pre-configure' phase.  Remove 'wrap-programs' phase.
 2016-07-22 19:09:11 +08:00
Daniel Pimentel 8d63dddac1
gnu: Add python-protobuf. 
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): New variables.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-07-22 02:22:49 -04:00
Leo Famulari d7cff656df
gnu: muparser: Update source URL. 
* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location.
Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
 2016-07-21 18:25:20 -04:00
Leo Famulari de67e92288
gnu: Update URLs for sourceforge.net. 
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
 2016-07-21 18:09:40 -04:00
Kei Kebreau a205d3f991
gnu: Add hexedit. 
* gnu/packages/hexedit: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-07-21 14:06:05 -04:00
Tomáš Čech 24e964314e
services: Export *-service-type and *-configuration. 
This allows users to use 'modify-services' and similar constructs for
all these service types.

* gnu/services/avahi.scm: export avahi-configuration.
* gnu/services/base.scm: export gpm-configuration and
rngd-configuration.
* gnu/services/databases.scm: export *-service-type and *-configuration.
* gnu/services/dbus.scm: export dbus-configuration.
* gnu/services/dict.scm: export dicod-service-type.
* gnu/services/lirc.scm: export lirc-configuration and
lirc-service-type.
* gnu/services/mail.scm: export dovecot-service-type.
* gnu/services/web.scm: export nginx-configuration and
nginx-service-type.
* gnu/services/xorg.scm: export screen-locker and screen-locker?.
* gnu/services/ssh.scm: export lsh-configuration and lsh-service-type.
* gnu/services/desktop.scm: export *-service, *-service-type
and *-configuration.
* gnu/services/networking.scm: export *-configuration
and *-service-type.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-21 18:53:27 +02:00
Efraim Flashner 427dda54f2
gnu: tesseract-ocr: Update to 3.04.01. 
* gnu/packages/ocr.scm (tesseract-ocr): Update to 3.04.01.
[source]: Download from Github, add 'file-name' field, remove snippet.
[native-inputs]: Remove autoconf, automake, libtool.
[propagated-inputs]: Move leptonica ...
[inputs]: ... to here.
[arguments]: Remove 'autogen phase.
[home-page]: Move program's home-page to Github.
 2016-07-21 17:18:42 +03:00
Efraim Flashner a9c64810cd
gnu: gnuplot: Update to 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
 2016-07-21 13:56:51 +03:00
Efraim Flashner 873966e3e9
gnu: dovecot: Update to 2.2.25. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.25.
 2016-07-21 13:56:13 +03:00
Efraim Flashner 132e14b4cc
gnu: texlive: Use https. 
* gnu/packages/tex.scm (texlive-bin, texlive-texmf, texlive)[license]:
Use 'https' in the url.
[home-page]: Use 'https' in the url.
 2016-07-21 12:56:17 +03:00
Efraim Flashner 29a56d8eaf
gnu: texlive: Update in-place source updates. 
* gnu/packages/tex.scm (texlive-texmf-source, texlive-bin)[source]:
Update to 20160523b.
 2016-07-21 12:46:12 +03:00
Leo Famulari d23d1ddf6e
gnu: msmtp: Update to 1.6.5. 
* gnu/packages/mail.scm (msmtp): Update to 1.6.5.
[source]: Update source URL.
 2016-07-21 01:43:01 -04:00
Eric Bavier 2908087013
gnu: superlu-dist: Remove non-free source. 
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
 2016-07-20 21:16:25 -05:00
Eric Bavier 8787c555d9
gnu: slepc: Update to 3.7.1. 
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
 2016-07-20 21:16:25 -05:00
Eric Bavier fafd623e49
gnu: petsc: Update to 3.7.2. 
* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
 2016-07-20 21:16:24 -05:00
Eric Bavier b730b43770
gnu: petsc: Make header generation reproducible. 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from
  petscmachineinfo.h header.
 2016-07-20 21:16:24 -05:00
Eric Bavier 64dcc28963
gnu: petsc: Use modify-phases. 
* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
 2016-07-20 21:16:24 -05:00
Eric Bavier 9474a4b3ec
gnu: openmpi: Make binaries reproducible. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove timestamps from
source files.  Delete installed configure logs.
 2016-07-20 21:16:24 -05:00
Eric Bavier 6876590fd4
gnu: openmpi: Update to 1.10.3. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.3.
[source]: Use https.
 2016-07-20 21:15:37 -05:00
Eric Bavier 995a09e055
gnu: superlu: Update to 5.2.1. 
* gnu/packages/maths.scm (superlu): Update to 5.2.1.
[source]: Remove non-free MC64 code.
[inputs]: Use openblas instead of lapack's BLAS.
[build-system]: Use cmake-build-system.
[arguments]: Remove custom phases and replace with CMake flags.
[license]: List additional licenses for some source and example files.
 2016-07-20 18:31:16 -05:00
Eric Bavier d721c83a63
gnu: Add libhilbert. 
* gnu/packages/maths.scm (libhilbert): New variable.
 2016-07-20 18:31:16 -05:00
Ludovic Courtès b006ba5038
pull: Update the version string. 
Fixes <http://bugs.gnu.org/19278>.
Reported by Tomáš Čech <tcech@suse.cz>.

This allows 'guix --version' to return something that better represents
what version is being used.

* build-aux/build-self.scm (date-version-string): New procedure.
(build): Add #:version.
[builder]: Pass it to 'build-guix' as #:package-version.
 2016-07-20 22:53:02 +02:00
Ludovic Courtès 13cee334f1
pull: Install (guix config) module to override the user's one. 
* build-aux/build-self.scm (zlib, gzip, bzip2, xz): New variables.
(build)[storedir, localstatedir, sysconfdir, sbindir]: New variables.
[builder]: Pass them to 'build-guix'.
* guix/build/pull.scm (build-guix): Add #:system, #:storedir,
  #:localstatedir, #:sysconfdir, #:sbindir, #:package-name,
  #:package-version, #:bug-report-address, #:home-page-url, #:libgcrypt,
  #:zlib, #:gzip, #:bzip2, and #:xz.  Remove #:gcrypt.
  Instantiate all the substitution variables in (guix config).  Remove
  code to delete OUT/guix/config.{scm,go}.
* guix/config.scm.in: Add note about (guix script pull).
 2016-07-20 22:53:02 +02:00
Ludovic Courtès 0b0086e94c
config: Export the raw installation directories. 
* guix/config.scm.in (%storedir, %localstatedir)
(%sysconfdir, %sbindir): New variables.
(%store-directory): Use %STOREDIR.
(%state-directory): Use %LOCALSTATEDIR.
(%config-directory): Use %SYSCONFDIR.
(%guix-register-program): Use %SBINDIR.
 2016-07-20 22:53:02 +02:00
Ricardo Wurmus cdf8f39195
gnu: Add allegro-5.0. 
* gnu/packages/game-development.scm (allegro-5.0): New variable.
 2016-07-20 22:19:34 +02:00
Ricardo Wurmus 19d311b4f2
gnu: Add allegro. 
* gnu/packages/game-development.scm (allegro): New variable.
 2016-07-20 22:19:34 +02:00
Ludovic Courtès ab84b927ef
download: Prepare to support the 'guix publish' /file URLs. 
* guix/download.scm (%content-addressed-mirrors): Add 'file' parameter
to the lambda.
* guix/build/download.scm (url-fetch)[content-addressed-uris]: Adjust
accordingly.
 2016-07-20 17:02:35 +02:00
Ludovic Courtès ff6638d112
publish: Handle '/file' URLs, for content-addressed files. 
* guix/scripts/publish.scm (render-content-addressed-file): New procedure.
(http-write): Add 'application/octet-stream' case.
(make-request-handler): Add /file/NAME/sha256/HASH URLs.
* tests/publish.scm ("/file/NAME/sha256/HASH")
("/file/NAME/sha256/INVALID-NIX-BASE32-STRING")
("/file/NAME/sha256/INVALID-HASH"): New tests.
* doc/guix.texi (Invoking guix publish): Mention the /file URLs.
 2016-07-20 16:54:31 +02:00