Commit Graph

35050 Commits

Author SHA1 Message Date
Ricardo Wurmus c7fe888b42
gnu: Add python-scanpy.
* gnu/packages/bioinformatics.scm (python-scanpy): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus 22b770ce00
gnu: Add python-anndata.
* gnu/packages/python.scm (python-anndata): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus d8b8eb3ff5
gnu: Add python-numba.
* gnu/packages/python.scm (python-numba): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus 8892cac329
gnu: Add python-llvmlite.
* gnu/packages/llvm.scm (python-llvmlite): New variable.
2018-08-29 17:06:13 +02:00
Marius Bakke 9e17757ff5
Revert "gnu: snappy: Optimise."
This causes too many rebuilds for the master branch.

This reverts commit f96ed06805.
2018-08-29 16:58:54 +02:00
Ricardo Wurmus 9587544b44
gnu: Add ghc 8.4.3.
* gnu/packages/haskell.scm (ghc-8): Rename this...
(ghc-8.0): ...to this.
(ghc): Point at ghc-8.0.
(ghc-8): New variable for GHC 8.4.3.

Co-authored-by: Timothy Samplet <samplet@ngyro.com>
2018-08-29 16:56:35 +02:00
Ricardo Wurmus 59b55def00
gnu: Add r-infotheo.
* gnu/packages/cran.scm (r-infotheo): New variable.
2018-08-29 13:11:17 +02:00
Tobias Geerinckx-Rice acf18cb190
gnu: capstone: Use HTTPS home page.
* gnu/packages/engineering.scm (capstone)[home-page]: Use HTTPS.
2018-08-28 22:46:38 +02:00
Tobias Geerinckx-Rice 2c3d30ef51
gnu: r-plotrix: Update to 3.7-3.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-3.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice f882d7c7c5
gnu: python-apipkg: Update home page.
* gnu/packages/python.scm (python-apipkg)[home-page]: Update.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice e29bb27d88
gnu: r-pracma: Update to 2.1.5.
* gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice 7bbdd943e7
gnu: claws-mail: Update to 3.17.1.
* gnu/packages/mail.scm (claws-mail): Update to 3.17.1.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice 4fca5a44f6
gnu: libntlm: Update to 1.5.
* gnu/packages/gsasl.scm (libntlm): Update to 1.5.
[source]: Use HTTPS.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice f96ed06805
gnu: snappy: Optimise.
* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’.
* gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-08-28 22:30:59 +02:00
Efraim Flashner dc8675afa7
gnu: Add urlscan.
* gnu/packages/mail.scm (urlscan): New variable.
2018-08-28 22:48:32 +03:00
Efraim Flashner 967de7c5b0
gnu: Add ephoto.
* gnu/packages/enlightenment.scm (ephoto): New variable.
2018-08-28 22:45:55 +03:00
Vagrant Cascadian 84fbb4b223
gnu: electron-cash: Update to 3.3.1.
* gnu/packages/finance.scm (electron-cash): Update to 3.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-28 15:30:13 -04:00
Leo Famulari 8a5a1eff42
gnu: dropbear: Fix CVE-2018-15599.
* gnu/packages/patches/dropbear-CVE-2018-15599.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (dropbear)[source]: Use it.
2018-08-28 14:44:11 -04:00
Ludovic Courtès 6772ed1e07
services: openssh: Add 'log-level' field.
* gnu/services/ssh.scm (<openssh-configuration>)[log-level]: New field.
(openssh-config-file): Honor it.
* doc/guix.texi (Networking Services): Document it.
2018-08-28 12:35:02 +02:00
Ludovic Courtès 1ae29e3f5a
gnu: dico: Update to 2.6.
* gnu/packages/dico.scm (dico): Update to 2.6.
[inputs]: Switch to GUILE-2.2.
2018-08-28 12:35:02 +02:00
Ison111 d2434b6966
gnu: Add SpaceFM.
* gnu/packages/lxde.scm (spacefm): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-08-28 12:35:02 +02:00
Alex Kost 40f7ebac66
gnu: Add emacs-build-farm.
* gnu/packages/emacs.scm (emacs-build-farm): New variable.
2018-08-28 12:23:52 +03:00
Alex Kost 8b1f8f64c8
gnu: openmw: Update to 0.44.0.
* gnu/packages/game-development.scm (openmw): Update to 0.44.0.
2018-08-28 12:23:52 +03:00
Chris Marusich 3bcb305b98
services: tor: Make it easier to use UNIX sockets.
* doc/guix.texi (Networking Services): Document it, and mention that
tor-service is deprecated.
* gnu/services/networking.scm (<tor-configuration>) <socks-socket-type>:
New field.
(tor-configuration->torrc): When socks-socket-type is 'unix, set
SocksPort to UNIX domain socket /var/run/tor/socks-sock and set
UnixSocksGroupWritable to 1.
* gnu/tests/networking.scm (%tor-os/unix-socks-socket): Instead of using
a custom config file, just set socks-socket-type to 'unix.
2018-08-28 00:25:05 -07:00
Chris Marusich b0f951e4f0
tests: tor: Add more test cases.
* gnu/tests/networking.scm (%tor-os/unix-socks-socket): New variable.
(run-tor-test) <os/unix-socks-socket, marionette/unix-socks-socket>
<socket-directory>: New variables.
<"tor is alive">: Move common code from this test case...
<tor-is-alive?>: ...into this new procedure.
<"tor is listening", "tor is alive, even when using a SOCKS socket">
<"tor is listening, even when using a SOCKS socket">: New test cases.
2018-08-28 00:19:58 -07:00
Chris Marusich cb29343940
marionette: Add wait-for-unix-socket.
* gnu/build/marionette.scm (wait-for-unix-socket): New variable.
2018-08-28 00:19:58 -07:00
Chris Marusich 4dd53a83b5
marionette: Add support for QEMU's "quit" command.
* gnu/build/marionette.scm (marionette-control): Don't wait for the
monitor prompt when the command was "quit".
2018-08-28 00:14:25 -07:00
Chris Marusich d973915e48
services: tor: Rename activation procedure.
* gnu/services/networking.scm: Rename the procedure
tor-hidden-service-activation to tor-activation.
2018-08-28 00:14:24 -07:00
Chris Marusich 5dfd80e1c5
services: tor: Add a system test.
* gnu/services/networking.scm (tor-configuration->torrc): Set PidFile to
/var/run/tor/tor.pid in the base torrc configuration.
(tor-shepherd-service) <start>: Call make-forkexec-constructor/container with
a new #:pid-file argument to tell Shepherd where to find the PID file.  Add a
a new <file-system-mapping> to its existing #:mappings argument to share
/var/run/tor with the the container.
(tor-hidden-services-activation): Update docstring.  Create /var/run/tor and
set its permissions so only the tor user can access it.
* gnu/tests/networking.scm (%test-tor, %tor-os): New variables.
(run-tor-test): New procedure.
2018-08-28 00:14:24 -07:00
Marius Bakke 526ce41930
gnu: GRUB: Check for errors from efibootmgr.
* gnu/packages/patches/grub-check-error-efibootmgr.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bootloaders.scm (grub)[source](patches): New field.
2018-08-28 01:19:28 +02:00
Marius Bakke 2987b2e0d2
gnu: seabios: Update source URI.
* gnu/packages/firmware.scm (seabios)[source](uri): Download from seabios.org.
2018-08-28 01:19:28 +02:00
Marius Bakke eb87b634a7
gnu: slang: Update to 2.3.2.
* gnu/packages/slang.scm (slang): Update to 2.3.2.
2018-08-28 01:19:28 +02:00
Marius Bakke 3c3c3d1d92
gnu: emacs-async: Download using git.
The MELPA tarball hash changed.  Prevent this problem in the future
by downloading a git checkout.

* gnu/packages/emacs.scm (emacs-async)[home-page]: Update to actual.
[source]: Use GIT-FETCH.
2018-08-28 01:19:28 +02:00
Ludovic Courtès a0a2c2f16a
pull: Use (git) and (guix git) unconditionally.
The autoload hack was added a year ago, before 0.14.0, i.e., before any
release would depend on Guile-Git.  Both 0.14.0 and 0.15.0 required
Guile-Git, and 'guix pull' now automatically pulls it in, so this hack
is no longer necessary.

* guix/scripts/pull.scm: Use (git) and (guix git).  Remove top-level
call to 'module-autoload!'.
(ensure-guile-git!): Remove.
(guix-pull): Remove call to 'ensure-guile-git!'.
2018-08-27 23:22:17 +02:00
Ludovic Courtès f2d0a2cf5c
self: Shrink the module search path of the 'guix' command.
Previously we'd have lots of useless entries on the search paths, such
as libtasn1, libidn2, zlib, gmp, etc. because they are propagated by
gnutls.

* guix/self.scm (guix-command)[source-directories, object-directories]:
New variables.  Use them in the body of "guix-command".  Filter their
items with 'file-exists?'.
2018-08-27 23:22:17 +02:00
Leo Famulari 0de33cb364
gnu: feh: Enable EXIF support.
* gnu/packages/image-viewers.scm (feh)[arguments]: Enable EXIF support.
(inputs): Add libexif.
2018-08-27 17:04:57 -04:00
Leo Famulari f2d2dc70fc
gnu: libexif: Update home-page URL.
* gnu/packages/photo.scm (libexif)[home-page]: Update URL.
2018-08-27 17:04:57 -04:00
Leo Famulari 6635a3cc7f
gnu: python-pygit2: Update to 0.26.4.
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4.
[source]: Remove 'python-pygit2-disable-network-tests.patch'.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-27 15:13:46 -04:00
Clément Lassieur a30cbd5dfb
gnu: cuirass: Update to 8d40c49.
* gnu/packages/ci.scm (cuirass): Update to 8d40c49.
2018-08-27 16:12:56 +02:00
Pierre Neidhardt 4715f92ef0
Update email for Pierre Neidhardt.
* .mailmap: Add name and email for Pierre Neidhardt.
* gnu/packages/c.scm, gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/disk.scm, gnu/packages/emacs.scm, gnu/packages/freedesktop.scm,
gnu/packages/golang.scm, gnu/packages/image.scm, gnu/packages/music.scm,
gnu/packages/networking.scm, gnu/packages/password-utils.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/textutils.scm, gnu/packages/video.scm, gnu/packages/xdisorg.scm:
Update email for Pierre Neidhardt.
2018-08-27 14:46:26 +02:00
Rutger Helling 2aeee872a6
gnu: weston: Update to 5.0.0.
* gnu/packages/freedesktop.scm (weston): Update to 5.0.0.
2018-08-27 10:11:30 +02:00
Ludovic Courtès 1ca54999db
gnu: Add Lepton-EDA.
* gnu/packages/engineering.scm (lepton-eda): New variable.
2018-08-27 01:13:23 +02:00
Ludovic Courtès 69502b5eb4
gnu: Add guile-aa-tree.
* gnu/packages/guile.scm (guile-aa-tree): New variable.
2018-08-27 01:13:23 +02:00
Christopher Lemmer Webber 6948fa0875
gnu: emacs-racket-mode: Update to commit add0190.
* gnu/packages/emacs.scm (emacs-racket-mode): Update to commit add0190.
2018-08-26 07:02:04 -04:00
Julien Lepiller 1d8d69c863
nls: Update 'fr' translation. 2018-08-26 12:43:49 +02:00
Arun Isaac 2cad58ca6f
gnu: ghc-scientific: Update to 0.3.6.2.
* gnu/packages/haskell.scm (ghc-scientific): Update to 0.3.6.2.
[inputs]: Move ghc-tasty ...
[native-inputs]: ... to here.
2018-08-26 11:48:22 +05:30
Arun Isaac 7550f4b0ef
gnu: ghc-integer-logarithms: Update to 1.0.2.1.
* gnu/packages/haskell.scm (ghc-integer-logarithms): Update to 1.0.2.1.
[inputs]: Move ghc-quickcheck, ghc-smallcheck, ghc-tasty, ghc-tasty-hunit,
ghc-tasty-quickcheck, ghc-tasty-smallcheck ...
[native-inputs]: ... to here.
[home-page]: Update URI.
2018-08-26 11:37:25 +05:30
Arun Isaac b625f3a5fb
gnu: ghc-smallcheck: Update to 1.1.5.
* gnu/packages/haskell.scm (ghc-smallcheck): Update to 1.1.5.
2018-08-26 11:33:48 +05:30
Arun Isaac 3c30054290
gnu: ghc-optparse-applicative: Update to 0.14.2.0.
* gnu/packages/haskell.scm (ghc-optparse-applicative): Update to 0.14.2.0.
[arguments]: Enable tests.
2018-08-26 11:27:00 +05:30
Mark H Weaver cfb15a5163
gnu: linux-libre: Update to 4.18.5.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.5.
(%linux-libre-hash): Update hash.
2018-08-26 00:38:41 -04:00