e8a7eab169
gnu: kallisto: Update to 0.44.0.
...
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.44.0.
[source]: Fetch from git.
[arguments]: Add build phase to use htslib from Guix.
[inputs]: Add htslib.
2018-10-11 16:12:11 +02:00
a8fa86c477
gnu: Add python-cvxopt.
...
* gnu/packages/maths.scm (python-cvxopt, python2-cvxopt): New variables.
2018-10-11 10:30:30 +02:00
2faf2edf58
gnu: linux-libre: Update to 4.18.13.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.13.
(%linux-libre-hash): Update hash.
2018-10-10 23:19:36 -04:00
4f1d7e386b
gnu: linux-libre@4.14: Update to 4.14.75.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.75.
(%linux-libre-4.14-hash): Update hash.
2018-10-10 23:18:28 -04:00
0e8f0803b5
gnu: linux-libre@4.9: Update to 4.9.132.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.132.
2018-10-10 23:17:53 -04:00
e05fe1f917
gnu: linux-libre@4.4: Update to 4.4.160.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.160.
2018-10-10 23:17:14 -04:00
dc5282f9ea
gnu: hexchat: Update to 2.14.2.
...
* gnu/packages/messaging.scm (hexchat): Update to 2.14.2.
2018-10-11 00:01:44 +02:00
272fc9dca3
gnu: tlp: Return #t from phases.
...
* gnu/packages/linux.scm (tlp)[argument]: Return #t all from phases.
2018-10-11 00:01:44 +02:00
43abffa1a3
gnu: hdparm: Update to 9.56.
...
* gnu/packages/linux.scm (hdparm): Update to 9.56.
2018-10-10 23:49:14 +02:00
50298d4a81
gnu: perftest: Update to 4.4-0.4.
...
* gnu/packages/linux.scm (perftest): Update to 4.4-0.4.
2018-10-10 23:49:14 +02:00
b71a34887b
gnu: haveged: Mark up description.
...
* gnu/packages/linux.scm (haveged)[description]: Use @dfn{} and
split into two paragraphs.
2018-10-10 23:49:13 +02:00
893c340c3a
gnu: haveged: Update to 1.9.4.
...
* gnu/packages/linux.scm (haveged): Update to 1.9.4.
[source]: Use GIT-FETCH and GIT-FILE-NAME from new (development) home.
2018-10-10 23:49:13 +02:00
f825faa502
gnu: python-pickleshare: Update to 0.7.5.
...
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.5.
2018-10-10 23:49:13 +02:00
43c97cceae
gnu: ranger: More test tweaks.
...
There's no functional difference between 'make test_pytest' and running
'py.test' directly, but there may be in future.
This follows up on commit 14173b3c6765bd8fcb2b12ea28fc27226645c7e1.
* gnu/packages/disk.scm (ranger)[arguments]: Use #:test-target to run
the (same) tests through 'make'.
[native-inputs]: Remove left-over python-flake8 and python-pylint.
2018-10-10 23:49:13 +02:00
47f9fb18a3
gnu: Add kicad-symbols.
...
* gnu/packages/engineering.scm (kicad-symbols): New variable.
2018-10-10 23:04:18 +02:00
3d0fdb34a2
gnu: ranger: Update to 1.9.2.
...
* gnu/packages/disk.scm (ranger): Update to 1.9.2.
[native-inputs]: Order alphabetically.
[arguments]: Actually run tests and remove useless #:test-target.
2018-10-10 22:12:03 +02:00
3820d51bec
Order (gnu packages disk) module imports alphabetically.
...
* gnu/packages/disk.scm (define-module): Order module imports
alphabetically.
2018-10-10 22:12:02 +02:00
1f033795e2
gnu: ndctl: Update to 63.
...
* gnu/packages/disk.scm (ndctl): Update to 63.
[source]: Use GIT-FILE-NAME.
[native-inputs]: Add bash-completion.
[arguments]: Add '--disable-asciidoctor' and '--without-systemd'
#:configure-flags. Don't bother patching unused ./autogen.sh in
'patch-FHS-file-names' phase.
2018-10-10 22:12:02 +02:00
4273a7ef65
gnu: libblockdev: Update to 2.20.
...
* gnu/packages/disk.scm (libblockdev): Update to 2.20.
[license]: Update to match fixed licence headers.
2018-10-10 22:12:02 +02:00
8984dbd0de
gnu: volume-key: Update to 0.3.12.
...
* gnu/packages/disk.scm (volume-key): Update to 0.3.12.
2018-10-10 22:12:02 +02:00
8f3dc810b1
gnu: emacs-slime: Update to 2.22.
...
* gnu/packages/emacs.scm (emacs-slime): Update to 2.22.
2018-10-10 17:45:07 +02:00
3e70c3a06e
gnu: emacs-evil-collection: Update to 0.0.1.
...
* gnu/packages/emacs.scm (emacs-evil-collection): Update to 0.0.1.
2018-10-10 17:43:51 +02:00
903378910e
gnu: Add numlockx.
...
* gnu/packages/xdisorg.scm (numlockx): New variable.
2018-10-10 17:32:53 +02:00
121f32a104
gnu: guile-next: Update to 2.9.1.
...
* gnu/packages/guile.scm (guile-next): Update to 2.9.1.
[native-inputs, arguments]: Remove.
[properties]: New field.
2018-10-10 14:48:46 +02:00
6b009dbfea
gnu: openal: Update source and home page URLs.
...
Fixes <https://bugs.gnu.org/33000 >.
Reported by Nam Nguyen <namn@berkeley.edu>.
* gnu/packages/audio.scm (openal)[source, home-page]: Update URLs.
2018-10-10 14:30:39 +02:00
296ad59216
gnu: haunt: Make sure Guile-CommonMark and Guile-Reader are always visible.
...
* gnu/packages/guile.scm (haunt)[arguments]: In 'wrap-haunt' phase, add
Guile-Reader and Guile-CommonMark to the search paths.
2018-10-10 13:48:21 +02:00
a50f5258c7
gnu: Add kdenlive.
...
* gnu/packages/kde.scm (kdenlive): New variable.
Co-authored-by: Gábor Boskovits <boskovits@gmail.com>
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-10-10 11:11:14 +02:00
e7cdd311ae
gnu: mlt: Prepare for kdenlive.
...
* gnu/packages/video.scm (mlt): Update to 6.10.0.
[inputs]: Add frei0r-plugins, gdk-pixbuf, gtk+-2, qtbase,qtsvg.
[make-flags]: Add "CXX=g++ -std=gnu++11".
Co-authored-by: Gábor Boskovits <boskovits@gmail.com>
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-10-10 11:10:46 +02:00
5ff15b86fc
gnu: lisp.scm: Arrange imported modules alphabetically.
...
* gnu/packages/lisp.scm: Arrange imported modules alphabetically.
2018-10-10 10:41:39 +03:00
e4c399fe15
gnu: clisp: Update to 2.49.92.
...
* gnu/packages/lisp.scm (clisp): Update to 2.49.92.
[source]: Switch to git-fetch. Remove unneeded patch.
[arguments]: Remove '--enable-portability' flag, add CFLAGS for
armhf-linux. Update list of files needing substitutions in custom
'patch-sh-and-pwd phase.
[home-page]: Update to new home-page.
* gnu/packages/patches/clisp-glibc-2.26.patch: Remove file.
& gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-10 10:41:37 +03:00
006a1d59ba
gnu: vkd3d: Update to 1.1.
...
* gnu/packages/vulkan.scm (vkd3d): Update to 1.1.
2018-10-10 09:34:09 +02:00
9096c00629
gnu: java-w3c-svg: Update synopsis and description.
...
* gnu/packages/batik.scm (java-w3c-svg-1.0)[synopsis]: Modify.
[description]: Modify.
(java-w3c-svg)[synopsis]: Modify.
[description]: Modify.
2018-10-09 21:44:11 +02:00
b2eda4a55e
gnu: java-w3c-svg: Fix build.
...
Reported-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
* gnu/packages/batik.scm (java-w3c-svg)[arguments]<#:phases>: Delete
"patch-interface" phase.
2018-10-09 21:44:09 +02:00
64965a068d
gnu: Add ttf2pt1.
...
* gnu/packages/fontutils.scm (ttf2pt1): New variable.
2018-10-09 18:54:12 +02:00
1fe57b3746
gnu: bs1770gain: Update to 0.5.0.
...
* gnu/packages/audio.scm (bs1770gain): Update to 0.5.0.
2018-10-09 12:04:34 +03:00
8658b81b1a
gnu: augeas: Update to 1.11.0.
...
* gnu/packages/augeas.scm (augeas): Update to 1.11.0.
[source]: Remove snippet.
2018-10-09 11:01:53 +03:00
8d18edde75
* gnu: agg: Replace bootstrap phase.
...
* gnu/packages/graphics.scm (agg)[arguments]: Remove custom 'autoreconf
phase and replace default 'bootstrap phase. Use INVOKE.
[native-inputs]: Remove bash.
2018-10-09 10:33:07 +03:00
31f45cf7be
gnu: agg: Don't build examples.
...
* gnu/packages/graphics.scm (agg)[arguments]: Disable building the
examples.
2018-10-09 10:33:03 +03:00
07b0662754
gnu: abiword: Remove wmf support.
...
* gnu/packages/abiword.scm (abiword)[arguments]: Remove 'wmf' from the
list of enabled plugins.
2018-10-09 09:56:35 +03:00
3880537c74
gnu: zstd: Don't use unstable tarball.
...
* gnu/packages/compression.scm (zstd)[source]: Use release archive.
2018-10-09 05:47:16 +02:00
317e80cead
gnu: unison: End all phases with #t.
...
* gnu/packages/ocaml.scm (unison)[arguments]: End all phases with #t.
2018-10-09 05:42:14 +02:00
f6ccb95a86
gnu: docx2txt: End phases with #t.
...
* gnu/packages/textutils.scm (docx2txt)[arguments]: End 'fix-install'
phase with #t.
2018-10-09 05:42:14 +02:00
de68ad095d
gnu: zstd: Update to 1.3.6.
...
* gnu/packages/compression.scm (zstd): Update to 1.3.6.
[source]: Remove merged patches.
* gnu/packages/patches/zstd-fix-stdin-list-test.patch,
gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-10-09 05:42:14 +02:00
65b8d61073
gnu: Add gimp-resynthesizer.
...
* gnu/packages/gimp.scm (gimp-resynthesizer): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-08 23:19:35 +02:00
df2d77c45f
gnu: Add emacs-colum-marker.
...
* gnu/packages/emacs.scm (emacs-colum-marker): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-08 22:55:00 +02:00
b6bd8b108a
gnu: Add filtlong.
...
* gnu/packages/bioinformatics.scm (filtlong): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-10-08 18:32:42 +02:00
f8e0d27c5c
gnu: emacs-google-translate: Update to 0.11.15.
...
* gnu/packages/emacs.scm (emacs-google-translate): Update to 0.11.15.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-08 18:32:42 +02:00
46e78707a3
gnu: Add font-sil-charis.
...
* gnu/packages/fonts.scm (font-sil-charis): New variable.
2018-10-08 18:32:42 +02:00
1d6417340d
gnu: Add font-sil-gentium.
...
* gnu/packages/fonts.scm (font-sil-gentium): New variable.
2018-10-08 18:32:42 +02:00
f6e9976393
gnu: Add r-dnabarcodes.
...
* gnu/packages/bioconductor.scm (r-dnabarcodes): New variable.
2018-10-08 14:19:04 +02:00
1deab8cbf6
gnu: Add picard.
...
* gnu/packages/music.scm (picard): New variable.
2018-10-08 07:41:21 +01:00
402561ccef
gnu: python2-backports-functools-lru-cache: Update to 1.5.
...
* gnu/packages/python.scm (python2-backports-functools-lru-cache): Update to 1.5.
2018-10-08 16:37:03 +10:00
5103c98f68
gnu: c-toxcore: Update to 0.2.8.
...
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.8.
2018-10-08 08:24:50 +02:00
a041066374
gnu: crawl, crawl-tiles: Update to 0.22.1.
...
* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.22.1.
* gnu/packages/patches/crawl-upgrade-saves.patch: Update accordingly.
2018-10-07 21:23:09 -04:00
a18accba46
gnu: Remove Go 1.10.
...
* gnu/packages/golang.scm (go-1.10): Remove variable.
(go-1.11)[arguments]: Remove unnecessary environment variable from
'set-bootstrap-variables' phase.
2018-10-07 20:48:30 -04:00
68afb9dccf
build-system/glib-or-gtk: Build 'in-source' by default.
...
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Change to
'out-of-source? #f'.
* gnu/packages/audio.scm (audacity)[arguments]: Use the default 'out-of-source?'
setting.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
2018-10-07 16:13:51 -04:00
cd220e60da
gnu: ncmpc: Update to 0.32.
...
* gnu/packages/mpd.scm (ncmpc): Update to 0.32.
[inputs]: Add boost, pcre, and python-sphinx. Remove glib.
[arguments]: Install the man pages correctly. Remove unnecessary configure flag.
2018-10-07 15:27:20 -04:00
247537da81
gnu: borg: The backup client cannot override the server-side storage quota.
...
* gnu/packages/patches/borg-respect-storage-quota.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
2018-10-07 13:57:32 -04:00
236fadf528
gnu: mes: Update to 0.18.
...
* gnu/packages/patches/mes-nyacc-0.86.0.patch: Removef file.
* gnu/local.mk (dist_patch_DATA): Remove entry.
* gnu/packages/mes.scm (mes): Update to 0.18.
2018-10-07 16:30:50 +02:00
ae6922ed14
gnu: Add java-jakarta-regexp.
...
* gnu/packages/java.scm (java-jakarta-regexp): New variable.
2018-10-07 15:28:37 +02:00
12a0b38ce6
gnu: java-xmlgraphics-commons: Add dependency to java-asm.
...
* gnu/packages/batik.scm (java-xmlgraphics-commons)[native-inputs]: Add
java-asm.
2018-10-07 14:47:36 +02:00
3158425eb8
gnu: java-xmlgraphics-commons: Add dependency to java-cglib.
...
* gnu/packages/batik.scm (java-xmlgraphics-commons)[native-inputs]: Add
java-cglib.
2018-10-07 14:46:26 +02:00
05dae40302
gnu: java-xmlgraphics-commons: Make error in tests fail the "check" phase.
...
* gnu/packages/batik.scm (java-xmlgraphics-commons)[arguments]<#:test-target>:
Use "junit" test target.
2018-10-07 14:43:47 +02:00
02803fdf45
gnu: java-xmlgraphics-commons: Remove bundled dependencies.
...
* gnu/packages/batik.scm (java-xmlgraphics-commons): Remove bundled
dependencies.
2018-10-07 14:42:57 +02:00
52d2725ab1
gnu: Add java-xmlgraphics-commons.
...
* gnu/packages/batik.scm (java-xmlgraphics-commons): New variable.
2018-10-07 14:32:05 +02:00
283f57d8fa
gnu: Add java-w3c-sac.
...
* gnu/packages/batik.scm (java-w3c-sac): New variable.
2018-10-07 14:16:01 +02:00
da99c46f63
gnu: Add java-w3c-svg.
...
* gnu/packages/batik.scm (java-w3c-svg-1.0, java-w3c-svg): New variables.
2018-10-07 14:15:21 +02:00
2c4be1add0
gnu: Add java-w3c-smil.
...
* gnu/packages/batik.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-10-07 14:14:13 +02:00
c8a99ab911
gnu: mercurial: Update to 4.6.2.
...
* gnu/packages/version-control.scm (mercurial): Update to 4.6.2.
2018-10-07 13:02:51 +03:00
96808b39e7
gnu: pd: Update to 0.49-0.
...
* gnu/packages/music.scm (pd): Update to 0.49-0.
2018-10-07 15:29:47 +08:00
ccfac015bf
gnu: wcslib: Update to 5.20.
...
* gnu/packages/astronomy.scm (wcslib): Update to 5.20.
[arguments]: Build parallelly.
2018-10-06 23:29:31 +02:00
e90ce11577
gnu: git: Update to 2.19.1 [fixes CVE-2018-17456].
...
* gnu/packages/version-control.scm (git): Update to 2.19.1.
2018-10-06 04:11:26 -04:00
d71078bc75
gnu: Add ngless.
...
* gnu/packages/bioinformatics.scm (ngless): New variable.
2018-10-05 23:59:27 +02:00
b1f9cc88c4
gnu: Add ghc-safeio.
...
* gnu/packages/haskell.scm (ghc-safeio): New variable.
2018-10-05 23:59:27 +02:00
ea202046fa
gnu: Add ghc-file-embed.
...
* gnu/packages/haskell.scm (ghc-file-embed): New variable.
2018-10-05 23:59:27 +02:00
c7e400b1ee
gnu: Add ghc-configurator.
...
* gnu/packages/haskell.scm (ghc-configurator): New variable.
2018-10-05 23:59:26 +02:00
d453b89944
gnu: Add ghc-bytestring-lexing.
...
* gnu/packages/haskell.scm (ghc-bytestring-lexing): New variable.
2018-10-05 23:59:26 +02:00
d9ee3e375c
gnu: Add ghc-inline-c-cpp.
...
* gnu/packages/haskell.scm (ghc-inline-c-cpp): New variable.
2018-10-05 23:59:26 +02:00
9ef95a196f
gnu: Add ghc-safe-exceptions.
...
* gnu/packages/haskell.scm (ghc-safe-exceptions): New variable.
2018-10-05 23:59:26 +02:00
88189099df
gnu: Add ghc-inline-c.
...
* gnu/packages/haskell.scm (ghc-inline-c): New variable.
2018-10-05 23:59:26 +02:00
52f5114d01
gnu: Add ghc-raw-string-qq.
...
* gnu/packages/haskell.scm (ghc-raw-string-qq): New variable.
2018-10-05 23:59:26 +02:00
5e6bf3e2da
gnu: Add ghc-hpack.
...
* gnu/packages/haskell.scm (ghc-hpack): New variable.
2018-10-05 23:59:26 +02:00
320323141f
gnu: Add ghc-interpolate.
...
* gnu/packages/haskell.scm (ghc-interpolate): New variable.
2018-10-05 23:59:26 +02:00
a933cbfb61
gnu: Add ghc-conduit-algorithms.
...
* gnu/packages/haskell.scm (ghc-conduit-algorithms): New variable.
2018-10-05 23:59:26 +02:00
71c2e3e1a1
gnu: Add ghc-pqueue.
...
* gnu/packages/haskell.scm (ghc-pqueue): New variable.
2018-10-05 23:59:26 +02:00
4fc161b9c6
gnu: Add ghc-bzlib-conduit.
...
* gnu/packages/haskell.scm (ghc-bzlib-conduit): New variable.
2018-10-05 23:59:26 +02:00
44c6180b3f
gnu: Add ghc-lzma-conduit.
...
* gnu/packages/haskell.scm (ghc-lzma-conduit): New variable.
2018-10-05 23:59:26 +02:00
38757d610e
gnu: Add ghc-bindings-dsl.
...
* gnu/packages/haskell.scm (ghc-bindings-dsl): New variable.
2018-10-05 23:59:26 +02:00
80588cfccf
gnu: Add ghc-stm-conduit.
...
* gnu/packages/haskell.scm (ghc-stm-conduit): New variable.
2018-10-05 23:59:26 +02:00
36ec599e78
gnu: Add ghc-lzma.
...
* gnu/packages/haskell.scm (ghc-lzma): New variable.
2018-10-05 23:59:26 +02:00
d05ed20ef1
gnu: Add ghc-cereal-conduit.
...
* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
2018-10-05 23:59:26 +02:00
6c8197783d
gnu: Add ghc-atomic-write.
...
* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
2018-10-05 23:59:25 +02:00
562cfae330
gnu: Add ghc-chart-cairo.
...
* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
2018-10-05 23:59:25 +02:00
7df25c77c5
gnu: Add ghc-cairo.
...
* gnu/packages/haskell.scm (ghc-cairo): New variable.
2018-10-05 23:59:25 +02:00
279c97dba8
gnu: ghc-regex: Fix build.
...
* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax
version checks.
2018-10-05 23:59:25 +02:00
a45c64701b
gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs.
...
* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove
ghc-http-client.
2018-10-05 23:59:25 +02:00
11ff2adc74
gnu: ruby-sass: Update to 3.6.0.
...
* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0.
[source]: Update sha256.
[native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
2018-10-05 21:25:42 +01:00
4d372cb9a2
gnu: Add ruby-mathn.
...
* gnu/packages/ruby.scm (ruby-mathn): New variable.
2018-10-05 21:25:42 +01:00
2c7cb711e9
gnu: ruby-sass-spec: Fix spec expectation.
...
This fixes building ruby-sass with Ruby 2.5.
* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
2018-10-05 21:25:42 +01:00
39ecb977d3
gnu: ruby-term-ansicolor: Fix test for Ruby 2.5.
...
* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
2018-10-05 21:25:41 +01:00
0b060e3486
gnu: ruby-shindo: Remove -rubygems flags.
...
These have been removed in Ruby 2.5.
* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
2018-10-05 21:25:41 +01:00
357450dca0
gnu: bioruby: Update to 1.5.2.
...
This works with Ruby 2.5.
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
2018-10-05 21:25:39 +01:00
b0e829c632
gnu: gnucash-docs: Update to 3.3.
...
The documentation on SourceForge is now located in the same directory as the
source code.
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
2018-10-05 14:28:44 -04:00
73ca145a7e
gnu: gnucash: Update to 3.3.
...
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
2018-10-05 13:41:08 -04:00
fc4738149f
gnu: Add bastet.
...
* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-05 19:32:45 +02:00
b008a12ae7
gnu: fdroidserver: Update to 1.0.10.
...
* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
2018-10-05 19:30:09 +02:00
8713c03e55
gnu: audacity: Don't use unstable tarball.
...
* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-05 19:30:09 +02:00
3f90445692
gnu: filezilla: Update to 3.37.4.
...
* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
2018-10-05 19:30:09 +02:00
38aca674c3
gnu: libfilezilla: Update to 0.14.0.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
2018-10-05 19:30:08 +02:00
a6798218be
gnu: samtools-0.1: Adjust to match changes in samtools.
...
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
2018-10-05 09:21:54 +02:00
8e72f0f319
gnu: deeptools: Update to 3.1.2.
...
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
2018-10-05 09:21:54 +02:00
939882f734
gnu: python-pysam: Update to 0.15.1.
...
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
2018-10-05 09:21:54 +02:00
1a28b9ab55
gnu: python-plotly: Add python-pandas to inputs.
...
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
2018-10-05 09:21:54 +02:00
f79b59e311
gnu: bcftools: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
2018-10-05 09:21:54 +02:00
4ae4a15232
gnu: samtools: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
2018-10-05 09:21:54 +02:00
bd5f5eece9
gnu: htslib: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
2018-10-05 09:21:50 +02:00
4a5e2a90d8
gnu: icecat: Add fixes from mozilla-esr60 [security fixes].
...
Includes fixes for CVE-2018-12386 and CVE-2018-12387.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.
2018-10-04 21:35:01 -04:00
2e073dc23c
gnu: linux-libre: Update to 4.18.12.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.
2018-10-04 20:36:32 -04:00
2195636cc1
gnu: linux-libre@4.14: Update to 4.14.74.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.
2018-10-04 20:36:30 -04:00
45f4ddd7c0
gnu: linux-libre@4.9: Update to 4.9.131.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
2018-10-04 20:36:28 -04:00
9e2aa70bad
gnu: petsc-openmpi: Configure with support for MUMPS solver.
...
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase
ahead of 'configure' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-10-04 18:21:17 -04:00
d8b042326d
gnu: hiawatha: Set sane run-time directory defaults.
...
* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default
directories. Replace the 'remove-empty-dirs' phase with a
'install-no-empty-directories' one.
2018-10-04 21:28:24 +02:00
b9b53fb4ff
gnu: hwloc: Update to 2.0.2.
...
* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
2018-10-04 21:28:24 +02:00
7382ecd818
gnu: Add nsd.
...
* gnu/packages/dns.scm (nsd): New public variable.
2018-10-04 21:10:34 +02:00
55b616fd15
gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779.
...
* gnu/packages/guile.scm (guile-next): Update to commit
6f3357b0df64c4be17e72079864c09a542f1c779.
2018-10-04 13:22:02 -04:00
e14b3067e3
gnu: guile-next: Add the correct native search paths.
...
* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0.
2018-10-04 13:21:50 -04:00
aff91b0d0b
gnu: hiawatha: Support HTTP/2.
...
* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2
to ENABLE_HTTP2.
[inputs]: Add nghttp2:lib.
2018-10-04 19:06:06 +02:00
8e87aa0497
gnu: hiawatha: Update to 10.8.3.
...
* gnu/packages/web.scm (hiawatha): Update to 10.8.3.
[source]: Also delete bundled copy of nghttp2.
[inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache.
* gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable.
2018-10-04 18:34:29 +02:00
38a9bf805d
gnu: mbedtls-apache: Update to 2.13.0 [security fixes].
...
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0.
[native-inputs]: Add python.
2018-10-04 17:42:30 +02:00
68c0a6260f
gnu: geos: Update to 3.7.0.
...
* gnu/packages/geo.scm (geos): Update to 3.7.0.
2018-10-04 20:01:06 +05:30
0136fbd167
gnu: hexedit: Update to 1.4.2.
...
* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2.
[source]: Use the author's more up-to-date git repository.
[native-inputs]: Add autoconf and automake.
2018-10-04 15:59:08 +02:00
4fab0da096
gnu: html-xml-utils: Update to 7.7.
...
* gnu/packages/xml.scm (html-xml-utils): Update to 7.7.
2018-10-04 15:59:08 +02:00
ddf72f5059
gnu: perl-xml-feed: Update to 0.54.
...
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54.
2018-10-04 15:59:07 +02:00
ca91d35225
gnu: guix: Update to 1d0be47.
...
* gnu/packages/package-management.scm (guix): Update to 1d0be47
2018-10-04 11:21:37 +02:00
ff30bb010b
gnu: escpr: Update to 1.6.30.
...
* gnu/packages/cups.scm (escpr): Update to 1.6.30.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-04 09:51:47 +02:00
63856931db
gnu: opencv: Update to 3.4.3.
...
[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-10-03T22:28:20+0200 using DSA]]
* gnu/packages/image-processing.scm (opencv): Update to 3.4.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-04 09:48:45 +02:00
666fb2884a
gnu: r-acclma: Fix uses of @acronym in description.
...
* gnu/packages/cran.scm (r-acclma)[description]: Fix order of arguments
to @acronym. The wrong order was causing 'stexi->shtml' to fail (match
error).
2018-10-04 09:46:43 +02:00
cd81c9e2a7
gnu: mpv: Update to 0.29.1.
...
* gnu/packages/video.scm (mpv): Update to 0.29.1.
2018-10-04 08:13:57 +02:00
689ca9ba23
gnu: retroarch: Update to 1.7.5.
...
* gnu/packages/emulators.scm (retroarch): Update to 1.7.5.
2018-10-04 06:28:27 +02:00
1fc346de4e
gnu: retroarch: Don't use unstable tarball.
...
* gnu/packages/emulators.scm (retroarch)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-04 06:28:27 +02:00
fe30eb6d24
gnu: ephoto: Fix typos in description.
...
* gnu/packages/enlightenment.scm (ephoto)[description]: Fix typos.
Wrap at 80 columns.
2018-10-04 06:28:27 +02:00
104f475f9b
gnu: perl-string-copyright: Update to 0.003006.
...
* gnu/packages/license.scm (perl-string-copyright): Update to 0.003006.
2018-10-04 06:28:26 +02:00
91a3c8005d
gnu: rpm: Update to 4.14.2.
...
* gnu/packages/package-management.scm (rpm): Update to 4.14.2.
[arguments]: Rename 'set-nspr-search-path' phase to
'set-nss-library-path' and remove CPATH work-around.
Remove obsolete 'fix-rpm-symlinks' phase.
[home-page]: Drop www.
2018-10-04 06:28:26 +02:00
88abd73eeb
gnu: imapfilter: Update to 2.6.12.
...
* gnu/packages/mail.scm (imapfilter): Update to 2.6.12.
2018-10-04 06:28:26 +02:00
b1d30f46c1
gnu: imapfilter: Don't use unstable tarball.
...
* gnu/packages/mail.scm (imapfilter)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-04 06:28:26 +02:00
1f2cf5d9db
gnu: nickle: Update to 2.82.
...
* gnu/packages/nickle.scm (nickle): Update to 2.82.
2018-10-04 06:28:25 +02:00
9e783d0bf2
gnu: ddcutil: Update to 0.9.2.
...
* gnu/packages/hardware.scm (ddcutil): Update to 0.9.2.
2018-10-04 04:20:06 +02:00
a926109d62
gnu: ndctl: Return #t from phases.
...
* gnu/packages/disk (ndctl)[arguments]: Rename inaccurately named
'autogen' phase to 'patch-FHS-file-names'. Explicitly return #t.
2018-10-04 04:20:06 +02:00
7f12d8134e
gnu: disorderfs: Update to 0.5.4.
...
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.4.
2018-10-04 04:20:06 +02:00
99f97a7752
gnu: packagekit: Update to 1.1.11.
...
* gnu/packages/freedesktop.scm (packagekit): Update to 1.1.11.
2018-10-04 04:20:05 +02:00
Ricardo Wurmus