081850816f
Merge branch 'master' into staging
2019-03-21 23:18:54 +01:00
915618f2ff
gnu: glm: Update to 0.9.9.4.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.4.
2019-03-21 19:23:48 +01:00
b2c52fc9ff
gnu: petsc: Update to 3.10.4.
...
* gnu/packages/maths.scm (petsc): Update to 3.10.4.
2019-03-18 22:17:37 +01:00
0e36b2b7d0
gnu: gnuplot: Update to 5.2.6.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.2.6.
2019-03-18 22:17:36 +01:00
98a5cd51b3
gnu: ipopt: Update to 3.12.12.
...
* gnu/packages/maths.scm (ipopt): Update to 3.12.12.
2019-03-18 21:20:31 +01:00
47956fa0c2
Correct name and email address for ng0.
...
* .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi,
doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm,
gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm,
gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm,
gnu/packages/language.scm, gnu/packages/libcanberra.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm:
Correct name and email address for ng0.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-03-18 15:05:08 +01:00
c958c31cae
gnu: double-conversion: Update to 3.1.4.
...
* gnu/packages/maths.scm (double-conversion): Update to 3.1.4.
2019-03-14 15:40:10 +01:00
a4de1a651e
gnu: double-conversion: Update to 3.1.3.
...
* gnu/packages/maths.scm (double-conversion): Update to 3.1.3.
[source](uri): Adjust for version tag prefix.
2019-03-10 18:38:51 +01:00
8c5533b582
Merge branch 'master' into staging
2019-03-10 18:38:25 +01:00
0ef54303f3
gnu: c-graph: Update to 2.0.1.
...
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
2019-03-07 22:00:52 +02:00
f339df425e
Merge branch 'master' into staging
2019-03-06 16:31:58 +01:00
5b8f892872
gnu: octave, octave-cli: Update to 5.1.0.
...
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0.
2019-03-06 09:17:33 -05:00
19464173ba
Merge branch 'master' into staging
2019-03-01 17:33:00 +01:00
8412fa6cc7
gnu: hypre: Remove indirect TexLive dependencies.
...
* gnu/packages/maths.scm (hypre)[native-inputs]: Remove
texlive-latex-oberdiek, texlive-generic-ifxetex, and texlive-latex-url from
texlive-union.
2019-03-01 12:55:34 +01:00
758439cf4b
gnu: python-petsc4py: Update to 10.3.1.
...
* gnu/packages/maths.scm (python-petsc4py): Update to 10.3.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-02-26 17:12:29 -05:00
aa51eb2073
Merge branch 'master' into staging
2019-02-24 21:25:52 +01:00
eea4a0910c
gnu: 4ti2: Update to 1.6.9.
...
* gnu/packages/maths.scm (4ti2): Update to 1.6.9.
[source]: Update URI.
2019-02-24 17:51:28 +01:00
5855756c81
gnu: openblas: Honor parallel-job-count.
...
* gnu/packages/maths.scm (openblas)[arguments]: Add "MAKE_NB_JOBS" make flag.
2019-02-21 22:04:48 -06:00
2c76e19df4
Merge branch 'master' into staging
2019-02-20 17:01:39 +01:00
40b114c0bb
gnu: dealii: Upgrade to 9.0.1.
...
* gnu/packages/patches/dealii-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1. Use patch.
[arguments]: Use new MPI configuration flags.
2019-02-13 22:39:12 -06:00
6901878894
Merge branch 'master' into staging
2019-02-14 00:20:28 +01:00
6d433d6ef7
gnu: Add ELPA.
...
* gnu/packages/maths.scm (elpa, elpa-openmpi): New variables.
2019-02-13 14:08:19 -06:00
aa94524052
gnu: petsc: Upgrade to 3.10.3.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.10.3.
2019-02-13 14:08:19 -06:00
f73750e6f4
gnu: scalapack: Remove use of deprecated MPI1 symbols.
...
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (scalapack)[source]: Use it.
2019-02-13 14:08:19 -06:00
602a5ef9f3
gnu: OpenBLAS: Update to 0.3.5.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.5.
2019-02-10 21:04:23 +01:00
50a93adc05
Merge branch 'staging'
2019-02-09 15:14:59 +01:00
4714b00e7a
gnu: Add dune-pdelab.
...
* gnu/packages/maths.scm (dune-pdelab): New variable.
2019-02-08 19:15:03 +01:00
85b9371cbe
gnu: Add dune-functions.
...
* gnu/packages/maths.scm (dune-functions): New variable.
2019-02-08 18:29:30 +01:00
0e50630f15
gnu: Add dune-typetree.
...
* gnu/packages/maths.scm (dune-typetree): New variable.
2019-02-08 17:58:32 +01:00
ab03d899ca
gnu: Add dune-alugrid.
...
* gnu/packages/maths.scm (dune-alugrid): New variable.
2019-02-08 17:52:47 +01:00
5a70aa7d69
gnu: Add dune-localfunctions.
...
* gnu/packages/maths.scm (dune-localfunctions): New variable.
2019-02-08 16:26:20 +01:00
ea51d3578c
gnu: Add dune-istl.
...
* gnu/packages/maths.scm (dune-istl): New variable.
2019-02-08 16:26:20 +01:00
ef6e69fdec
gnu: Add dune-grid.
...
* gnu/packages/maths.scm (dune-grid): New variable.
2019-02-08 16:26:20 +01:00
7b84610e21
gnu: hdf5: Upgrade to 1.8.21.
...
* gnu/packages/maths.scm (hdf5): Upgrade to 1.8.21.
[source]: Make version manipulations more readable using match.
2019-02-07 21:20:47 -06:00
7fedc3fdfb
gnu: hdf5: Remove use of deprecated MPI1 symbols.
...
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
2019-02-07 21:20:47 -06:00
2bdf26f1c8
gnu: superlu-dist: Remove use of deprecated MPI1 symbols.
...
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
2019-02-07 21:20:23 -06:00
242dbd8e5d
gnu: Add dune-geometry.
...
* gnu/packages/maths.scm (dune-geometry): New variable.
2019-02-07 22:36:01 +01:00
3847d1f22f
gnu: Add dune-common.
...
* gnu/packages/maths.scm (dune-common): New variable.
2019-02-07 22:36:01 +01:00
d11840b43e
gnu: wxmaxima: Update to 19.01.3.
...
* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
2019-02-06 12:52:27 -05:00
a4362fba0e
gnu: maxima: Update to 5.42.2.
...
* gnu/packages/maths.scm (maxima): Update to 5.42.2.
2019-02-06 12:52:27 -05:00
0747328e31
Merge branch 'master' into staging
2019-01-31 23:32:56 +01:00
fc9c47bd7c
gnu: maxima: Patch hardcoded paths.
...
* gnu/packages/maths.scm: (maxima): Patch hardcoded paths.
[arguments]: Add the phase 'patch-paths' to replace references to sed,
dirname, and head with direct references to the store.
[inputs]: Add sed.
2019-01-26 11:04:23 -05:00
7e309e8a8d
gnu: dealii-openmpi: Setup MPI for tests.
...
* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
2019-01-25 13:10:05 -06:00
6161141e91
superlu-dist: Upgrade to 6.1.0.
...
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer
sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ...
[inputs]: ...here. Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags. Add
'set-c++-standard' and 'omp-setup' phases. Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
2019-01-25 13:10:05 -06:00
fd3733432b
scotch: Upgrade to 6.0.6.
...
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
2019-01-25 13:10:05 -06:00
a6b9ebc2fc
gnu: Add Combinatorial BLAS.
...
* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
2019-01-25 13:09:47 -06:00
3e2d4e69c3
Merge branch 'master' into staging
2019-01-20 22:12:10 +01:00
6654f8c144
gnu: z3: Update to 4.8.4.
...
* gnu/packages/maths.scm (z3): Update to 4.8.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-18 11:12:59 -05:00
44d10b1f72
gnu: Separate Python core packages from the rest.
...
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
2019-01-15 14:46:44 +01:00
6764f94317
Merge branch 'master' into staging
2019-01-13 01:40:04 +01:00
Marius Bakke