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Author SHA1 Message Date
Tobias Geerinckx-Rice 0975ca3fd4
services: tor: Mark end of auto-generated configuration block. 
* gnu/services/networking.scm (tor-configuration->torrc): Clearly
demarcate auto-generated lines.
 2018-06-14 05:21:35 +02:00
Tobias Geerinckx-Rice 0b5c16c07f
Fix typo in (gnu packages gtk) header. 
* gnu/packages/gtk.scm: Fix ‘Coypright’ typo.
 2018-06-14 04:30:50 +02:00
Tobias Geerinckx-Rice b262aba733
gnu: python-gnupg: Return #t from phase. 
* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-06-14 04:02:14 +02:00
Tobias Geerinckx-Rice ff76a1e9ca
gnu: python-gnupg: Update to 0.4.3. 
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3.
[arguments]: Remove obsolete substitution.
 2018-06-14 04:01:21 +02:00
Tobias Geerinckx-Rice 2b78360138
gnu: sssd: Update to 1.16.2. 
* gnu/packages/sssd.scm (sssd): Update to 1.16.2.
[native-inputs]: Add libxml2.
 2018-06-14 00:52:30 +02:00
Ricardo Wurmus 844cc1c8f3
gnu: pigx-scrnaseq: Update to 0.0.5. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
 2018-06-13 22:30:55 +02:00
Nicolas Goaziou 4bf474b243
gnu: emacs-orgalist: Update to 1.8. 
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
 2018-06-13 21:38:18 +02:00
Kei Kebreau 935cb931b5
gnu: emacspeak: Update to 48.0. 
* gnu/packages/emacs.scm (emacspeak): Update to 48.0.
[arguments]: Use 'invoke'.  In the 'install' phase, add additional
installation directories and fix the launch script substitution.
[inputs]: Add emacs and perl.
[native-inputs]: Remove emacs-minimal.
 2018-06-13 14:44:13 -04:00
Ricardo Wurmus 6ccd88e8cb
gnu: r-factoextra: Fix syntax error. 
* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
 2018-06-13 16:42:29 +02:00
Ricardo Wurmus 13b8dcf589
gnu: r-seurat: Update to 2.3.2. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5b2a339e19
gnu: r-s4vectors: Update to 0.18.3. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5b730eba3e
gnu: r-biocviews: Update to 1.48.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus c812f46817
gnu: r-rjson: Update to 0.2.20. 
* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 242ffd6c80
gnu: r-zoo: Update to 1.8-2. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 6221de1879
gnu: r-rmarkdown: Update to 1.10. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d086829d39
gnu: r-highr: Update to 0.7. 
* gnu/packages/statistics.scm (r-highr): Update to 0.7.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 26a53dd957
gnu: r-stringi: Update to 1.2.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 3399dc97fc
gnu: r-munsell: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 0357db53c8
gnu: r-rgooglemaps: Update to 1.4.2. 
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 1df9a0cf47
gnu: r-reticulate: Update to 1.8. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus fa7236f1b3
gnu: r-later: Update to 0.7.3. 
* gnu/packages/cran.scm (r-later): Update to 0.7.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 36dc359186
gnu: r-radiant-data: Update to 0.9.5. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 014818b691
gnu: r-cubature: Update to 1.3-13. 
* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 8d2f8aeddf
gnu: r-extradistr: Update to 1.8.9. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 1268a995da
gnu: r-statnet-common: Update to 4.1.2. 
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 2bce7795c1
gnu: r-stringdist: Update to 0.9.5.1. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d0396c8ea1
gnu: r-rcpproll: Update to 0.3.0. 
* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus a151f1e60a
gnu: r-extremes: Update to 2.0-9. 
* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d87130cb2e
gnu: r-sp: Update to 1.3-1. 
* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5fa9be1118
gnu: r-getoptlong: Update to 0.1.7. 
* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 7b60ab3df7
gnu: r-circlize: Update to 0.4.4. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 693b4d0ba5
gnu: r-globaloptions: Update to 0.1.0. 
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 846325a8d8
gnu: Add r-writexl. 
* gnu/packages/cran.scm (r-writexl): New variable.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 546fc4aa55
gnu: Add r-hdf5r. 
* gnu/packages/cran.scm (r-hdf5r): New variable.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 0c9868aa5b
gnu: Add r-nbclust. 
* gnu/packages/cran.scm (r-nbclust): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus f22bfee945
gnu: Add r-factoextra. 
* gnu/packages/cran.scm (r-factoextra): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus e83841a296
gnu: Add r-factominer. 
* gnu/packages/cran.scm (r-factominer): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus cbf6017d83
gnu: Add r-flashclust. 
* gnu/packages/cran.scm (r-flashclust): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 141e43bd4e
gnu: Add r-ellipse. 
* gnu/packages/cran.scm (r-ellipse): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 5cbaaee83f
gnu: Add r-ggpubr. 
* gnu/packages/cran.scm (r-ggpubr): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 5219c5c585
gnu: Add r-ggsignif. 
* gnu/packages/cran.scm (r-ggsignif): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 85df1a8631
gnu: Add r-ggsci. 
* gnu/packages/cran.scm (r-ggsci): New variable.
 2018-06-13 11:51:28 +02:00
Rutger Helling 0c6ade0be6
gnu: openrct2: Update to 0.2.0. 
* gnu/packages/games.scm (openrct2-title-sequences): New variable.
* gnu/packages/games.scm (openrct2-objects): New variable.
* gnu/packages/games.scm (openrct2): Update to 0.2.0.
[arguments]: Add phases 'fix-usr-share-path&add-data, 'fix-gcc7 and
'get-rid-of-errors.
[inputs]: Add icu4c, openrct2-objects, openrct2-title-sequences.
[native-inputs]: Add gcc@7.
 2018-06-13 11:33:03 +02:00
Clément Lassieur c24b15472b
tests: Honor the return value of 'start-service'. 
Since commit dc7b3e5633, 'start-service' returns
the Shepherd's representation of the service as a sexp, and '#f' if the
service fails to start.  Also, it doesn't throw an exception when the service
fails to start, so relying on an exception instead of relying on its return
value is a false positive.

* gnu/tests/base.scm (run-nss-mdns-test): Split tests so to check the return
value of 'start-service'.
(run-mcron-test, run-nss-mdns-test): Use 'test-assert' with the return value
of 'start-service'.
* gnu/tests/admin.scm (run-tailon-test): Idem.
* gnu/tests/dict.scm (run-dicod-test): Idem.
* gnu/tests/mail.scm (run-opensmtpd-test, run-exim-test, run-dovecot-test):
Idem.
* gnu/tests/messaging.scm (run-xmpp-test, run-bitlbee-test): Idem.
* gnu/tests/nfs.scm (run-nfs-test): Idem.
* gnu/tests/rsync.scm (run-rsync-test): Idem.
* gnu/tests/ssh.scm (run-ssh-test): Idem.
* gnu/tests/version-control.scm (run-cgit-test, run-git-http-test): Idem.
* gnu/tests/web.scm (run-php-fpm-test): Idem.
 2018-06-13 09:11:45 +02:00
Rutger Helling 14618a1ebb
gnu: vkquake: Update to 1.00.0. 
* gnu/packages/games.scm (vkquake): Update to 1.00.0.
 2018-06-13 08:47:14 +02:00
Rutger Helling 4b3480d62f
gnu: cheese: Update to 3.28.0. 
* gnu/packages/gnome.scm (cheese): Update to 3.28.0.
 2018-06-13 08:44:02 +02:00
Leo Famulari 3a30ae05ae
gnu: openimageio: Update to 1.7.19. 
* gnu/packages/graphics.scm (openimageio): Update to 1.7.19.
 2018-06-13 00:31:58 -04:00
Tobias Geerinckx-Rice 502a822dfd
gnu: tor: Update to 0.3.3.7. 
* gnu/packages/tor.scm (tor): Update to 0.3.3.7.
 2018-06-12 22:59:29 +02:00
Hartmut Goebel b5792b9cb8
gnu: Add qtwebglplugin. 
* gnu/packages/qt.scm (qtwebglplugin): New variable.

Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
 2018-06-12 22:47:01 +02:00
Hartmut Goebel 359e30c9ea
gnu: Add qtwebview. 
* gnu/packages/qt.scm (qtwebview): New variable.
 2018-06-12 22:47:01 +02:00
Christopher Baines 25e071ead9
services: nginx: Support extra content in the http block. 
This helpful when adding content to the nginx configuration file, which isn't
supported by the record type used for the configuration.  For example, like
adding proxy_cache_path configuration.

* gnu/packages/web.scm (<nginx-configuration>): Add new extra-content field.
  (nginx-configuration-extra-content): New field accessor.
  (default-nginx-config): Add support for the extra-content field.
* doc/guix.texi (NGINX): Document the new extra-content field.
 2018-06-12 21:18:10 +01:00
Leo Famulari bea07c7f55
gnu: python-llfuse: Update to 1.3.3. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.3.3.
 2018-06-12 15:30:30 -04:00
Jan Nieuwenhuizen 67cb662a31
gnu: mes: Update to 0.15. 
* gnu/packages/mes.scm (mes): Update to 0.15.
 2018-06-12 19:21:10 +02:00
Efraim Flashner 6921e95ae8
gnu: mame: Fix renaming executable. 
* gnu/packages/emulators.scm (mame)[arguments]: Only rename 'mame64' to
'mame' when 'mame64' exists.
 2018-06-12 19:08:47 +03:00
Mathieu Othacehe a9e7d6564b
gnu: multipath-tools: Fix build. 
(multipath-tools)[arguments]: Pass -n to gzip to avoid timestamp related
warnings causing build failures.
 2018-06-12 16:13:16 +02:00
Ludovic Courtès 8d09bfe218
system: Move ~/.config/guix/current first in PATH and INFOPATH. 
Fixes <https://bugs.gnu.org/31770>.
Reported by iyzsong@member.fsf.org (宋文武).

* gnu/system.scm (operating-system-etc-service)["profile"]: Arrange so
that ~/.config/guix/current comes first in PATH and INFOPATH.
 2018-06-12 15:23:34 +02:00
Ludovic Courtès 90977eb55e
gnu: guile-bytestructures: Update to 1.0.3. 
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.3.
(guile-git)[arguments]: Remove.  The workaround for
<https://github.com/TaylanUB/scheme-bytestructures/issues/30> is no
longer needed.
 2018-06-12 15:23:34 +02:00
Ludovic Courtès b5edc47912
gnu: flann: Fix builds with CMake >= 3.11. 
* gnu/packages/patches/flann-cmake-3.11.patch: New file.
* gnu/packages/maths.scm (flann)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-06-12 15:23:34 +02:00
宋文武 feed5194b1
gnu: python-urwid, python2-urwid: Update to 2.0.1. 
* gnu/packages/python.scm (python-urwid, python2-urwird): Update to 2.0.1.
 2018-06-12 20:51:32 +08:00
Leo Famulari 66266d3290
gnu: borg: Update to 1.1.6. 
* gnu/packages/backup.scm (borg): Update to 1.1.6.
[arguments]: Remove the 'adjust-msgpack-dependency' phase because it has been
adopted upstream.
 2018-06-12 08:28:21 -04:00
Ben Sturmfels e68e4a906f
gnu: fabric: Disable problematic tests. 
Reported by Ricardo Wurmus <rekado@elephly.net> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=26647#8>.

* gnu/packages/admin.scm (fabric): Add custom check phase to disable two tests.
 2018-06-12 19:47:12 +08:00
宋文武 7714a06943
gnu: Add skopeo. 
* gnu/packages/virtualization.scm (skopeo): New variable.
 2018-06-12 19:31:18 +08:00
宋文武 efdaf8def0
gnu: Add umoci. 
* gnu/packages/virtualization.scm (umoci): New variable.
 2018-06-12 19:30:52 +08:00
宋文武 3d39130926
gnu: Add libostree. 
* gnu/packages/package-management.scm (libostree): New variable.
 2018-06-12 19:28:18 +08:00
Efraim Flashner c71cc133ec
gnu: vim-syntastic: Update to 3.9.0. 
* gnu/packages/vim.scm (vim-syntastic): Update to 3.9.0.
[source]: Switch to git checkout.
 2018-06-12 11:16:06 +03:00
Efraim Flashner 261348e20d
gnu: vim-fugitive: Update to 2.3. 
* gnu/packages/vim.scm (vim-fugitive): Update to 2.3.
 2018-06-12 11:16:06 +03:00
Efraim Flashner 35a7e5742f
gnu: vim-airline: Update to 0.9. 
* gnu/packages/vim.scm (vim-airline): Update to 0.9.
[source]: Switch to git checkout.
 2018-06-12 11:16:05 +03:00
Efraim Flashner b37404740e
gnu: speedtest-cli: Update to 2.0.2. 
* gnu/packages/networking.scm (speedtest-cli): Update to 2.0.2.
[source]: Switch to a git checkout.
 2018-06-12 11:16:05 +03:00
Efraim Flashner 5b47ea9462
gnu: font-gnu-unifont: Update to 11.0.01. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.01.
 2018-06-12 11:16:02 +03:00
Rutger Helling 14cb7966ba
gnu: wine-staging: Update to 3.10. 
* gnu/packages/wine.scm (wine-staging): Update to 3.10.
 2018-06-12 10:15:03 +02:00
Rutger Helling 32872458a6
gnu: wine-staging-patchset-data: Update to 3.10. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.10.
 2018-06-12 10:15:03 +02:00
Mark H Weaver 95d9d95a04
gnu: linux-libre: Update to 4.17.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.1.
(%linux-libre-hash): Update hash.
 2018-06-12 02:57:20 -04:00
Mark H Weaver f3ad05efd9
gnu: linux-libre@4.14: Update to 4.14.49. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.49.
(%linux-libre-4.14-hash): Update hash.
 2018-06-12 02:56:19 -04:00
Christopher Baines 2c5f8aad92
gnu: Add emacs-puppet-mode. 
* gnu/packages/emacs.scm (emacs-puppet-mode): New variable.
 2018-06-12 07:49:42 +01:00
Christopher Baines e7a25d2ae7
gnu: elixir: Enable more tests and remove patch. 
Previously, due to issues in the erlang package, many tests would fail, and
the package would also nondeterministically fail to build. This is now
fixed (by patching occurrences of /bin/sh in the erlang package), so all the
tests can be run.

* gnu/packages/elixir.scm (elixir)[source]: Remove patches.
[arguments]: Remove the fix-or-disable-tests phase. Add a new set-home phase
to set the HOME environment variable prior to running the tests.
* gnu/packages/patches/elixir-disable-failing-tests.patch: Delete this file.
* gnu/local.mk: Remove now deleted patch.
 2018-06-12 07:46:18 +01:00
Christopher Baines b5453aa7c3
gnu: erlang: Patch occurrences of /bin/sh in the source. 
Previously, the elixir package would often fail to build, as running :os:cmd
would fail, as /bin/sh doesn't exist when building the elixir package. These
changes fix that issue.

* gnu/packages/erlang.scm (erlang)[arguments]: Add new patch-/bin/sh phase to
replace hardcoded references to /bin/sh with a file in the store.
 2018-06-12 07:44:05 +01:00
Christopher Baines 9b25e1d124
gnu: erlang: Delete the bootstrap phase. 
This fails for the erlang package, as the gnu build system attempts to execute
the bootstrap directory.

* gnu/packages/erlang.scm (erlang)[arguments]: Delete the bootstrap phase.
 2018-06-12 07:43:59 +01:00
Marius Bakke 6321ce42ab
gnu: xf86-video-vmware: Update to 13.3.0. 
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.3.0.
 2018-06-11 23:23:10 +02:00
Marius Bakke 4276b0dc1e
gnu: xf86-input-evdev: Update to 2.10.6. 
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.6.
 2018-06-11 23:15:36 +02:00
Marius Bakke 7b7e30ca29
gnu: xf86-input-synaptics: Update to 1.9.1. 
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.9.1.
 2018-06-11 23:13:26 +02:00
Marius Bakke 8cfcb6ba2a
gnu: xf86-video-fbdev: Update to 0.5.0. 
* gnu/packages/xorg.scm (xf86-video-fbdev): Update to 0.5.0.
 2018-06-11 23:10:04 +02:00
Ludovic Courtès b19950a184
system: Default .bashrc now sources /etc/bashrc. 
This is a followup to commit 1382bde93c,
which disabled automatic sourcing of /etc/bashrc by interactive shell.
The noticeable effect of the change would be that Bash completion would
only work in login shells.

* gnu/system/shadow.scm (default-skeletons)["bashrc"]: Source
/etc/bashrc.
 2018-06-11 18:23:24 +02:00
Ludovic Courtès b63f6c0192
gnu: python2: Deprecate "python@2". 
* gnu/packages/python.scm (python2-called-python): New variable.
 2018-06-11 18:23:24 +02:00
Rutger Helling 4d65c1c304
gnu: wine-staging: Add vkd3d support. 
* gnu/packages/wine.scm (wine-staging)[inputs]: Add vkd3d.
 2018-06-11 18:22:10 +02:00
Rutger Helling 85c7f29a25
gnu: Add vkd3d. 
* gnu/packages/vulkan.scm (vkd3d): New variable.
 2018-06-11 18:22:10 +02:00
Rutger Helling 7f54065487
gnu: shaderc: Update to be8e087. 
* gnu/packages/vulkan.scm (shaderc): Update to be8e087.
[arguments]: Enable tests.
[inputs]: Add googletest.
 2018-06-11 18:22:10 +02:00
Rutger Helling fcfef82592
gnu: glslang: Update to 32d3ec3. 
* gnu/packages/vulkan.scm (glslang): Update to 32d3ec3.
 2018-06-11 18:22:10 +02:00
Rutger Helling ba10e0b8e1
gnu: spirv-tools: Update to fe2fbee. 
* gnu/packages/vulkan.scm (spirv-tools): Update to fe2fbee.
[arguments]: Disable tests. Remove "-DCMAKE_INSTALL_LIBDIR" configure-flag.
 2018-06-11 18:22:10 +02:00
Rutger Helling c7c86de669
gnu: spirv-headers: Update to 3ce3e49. 
* gnu/packages/vulkan.scm (spirv-headers): Update to 3ce3e49. Use INVOKE.
 2018-06-11 18:22:10 +02:00
Efraim Flashner 6da97043ea
gnu: Add ovmf-arm. 
* gnu/packages/firmware.scm (ovmf-arm): New variable.
 2018-06-11 19:16:23 +03:00
Efraim Flashner cb97be5f83
gnu: Add ovmf-aarch64. 
* gnu/packages/firmware.scm (ovmf-aarch64): New variable.
 2018-06-11 19:16:23 +03:00
Marius Bakke ff3fd83969
gnu: libraw: Update to 0.18.12 [security fixes]. 
* gnu/packages/photo.scm (libraw): Update to 0.18.12.
 2018-06-11 18:08:21 +02:00
Marius Bakke 9526d86141
gnu: libndp: Update to 1.7. 
* gnu/packages/networking.scm (libndp): Update to 1.7.
 2018-06-11 18:05:54 +02:00
Marius Bakke f24cfb6cc3
gnu: webkitgtk: Update to 2.20.3 [security fixes]. 
Fixes CVE-2018-4190, CVE-2018-4199, CVE-2018-4218, CVE-2018-4222,
CVE-2018-4232, CVE-2018-4233, CVE-2018-4246 and CVE-2018-11646.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.3.
 2018-06-11 17:56:56 +02:00
Marius Bakke 6e5a6e641a
gnu: efivar: Update to 36. 
* gnu/packages/linux.scm (efivar): Update to 36.
 2018-06-11 17:54:31 +02:00
Marius Bakke 21a21c20da
gnu: ldb: Delete bundled libraries from the source. 
* gnu/packages/samba.scm (ldb)[source](snippet): New field.
 2018-06-11 17:54:30 +02:00
Marius Bakke 4ee30d6aa2
gnu: ldb: Update to 1.4.0. 
* gnu/packages/samba.scm (ldb): Update to 1.4.0.
[inputs]: Add LMDB.
 2018-06-11 17:54:30 +02:00
Pierre Neidhardt 8bf7f741e9
gnu: Add Add emacs-wgrep-helm. 
* gnu/packages/emacs.scm (emacs-wgrep-helm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt 50a1f9264d
gnu: Add emacs-package-lint. 
* gnu/packages/emacs.scm (emacs-package-lint): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt 00f3774067
gnu: Add emacs-image+. 
* gnu/packages/emacs.scm (emacs-image+): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt bdfebc4b74
gnu: Add emacs-helm-pass. 
* gnu/packages/emacs.scm (emacs-helm-pass): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt 2f3aa1d309
gnu: Add emacs-helm-mu. 
* gnu/packages/emacs.scm (emacs-helm-mu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt 1e75852629
gnu: Add emacs-helm-ls-git. 
* gnu/packages/emacs.scm (emacs-helm-ls-git): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Rouby Pierre-Antoine 76a2b27897
gnu: Add go-github-com-spf13-pflag. 
* gnu/packages/golang.scm (go-github-com-spf13-pflag): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine bcb2179085
gnu: Add go-github-com-jonboulle-clockwork. 
* gnu/packages/golang.scm (go-github-com-jonboulle-clockwork): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine e8cdf560b0
gnu: Add go-github-com-gorilla-mux. 
* gnu/packages/golang.scm (go-github-com-gorilla-mux): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:01 +02:00
Tobias Geerinckx-Rice 14299d21f2
gnu: iproute2: Update to 4.17.0. 
* gnu/packages/linux.scm (iproute): Update to 4.17.0.
 2018-06-11 14:08:31 +02:00
Tobias Geerinckx-Rice 41ea698a4b
gnu: libfilezilla: Update to 0.12.3. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.3.
 2018-06-11 14:08:24 +02:00
Oleg Pykhalov e0cc7f669b
gnu: emacs-emacsql: Replace mysql with mariadb input. 
* gnu/packages/emacs.scm (emacs-emacsql)[inputs]: Replace 'mysql' with
'mariadb'.
 2018-06-11 11:47:50 +03:00
Ludovic Courtès 8b3aea9d9e
gnu: guix: Update to 77a1aac. 
* gnu/packages/package-management.scm (guix): Update to 77a1aac.
 2018-06-10 23:32:00 +02:00
宋文武 670a5e5430
gnu: keepalived: Install info documentation. 
* gnu/packages/cluster.scm (keepalived)[arguments]: Add phases 'build-info'
and 'install-info'.
[native-inputs]: Add texinfo.
 2018-06-10 23:42:14 +08:00
宋文武 af09dabf70
gnu: Add keepalived. 
* gnu/packages/cluster.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-06-10 22:57:01 +08:00
宋文武 4dd1fb79f7
gnu: Add libnfnetlink. 
* gnu/packages/linux.scm (libnfnetlink): New variable.
 2018-06-10 22:57:01 +08:00
Danny Milosavljevic fc51c11b9d
gnu: mumble: Fix build with Boost 1.66. 
Fixes <https://bugs.gnu.org/31775>.

* gnu/packages/patches/mumble-1.2.19-abs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/telephony.scm (mumble)[source]: Add it.
 2018-06-10 16:03:35 +02:00
宋文武 e6c8199b66
gnu: nix: Update to 2.0.4. 
* gnu/packages/package-management.scm (nix): Update to 2.0.4.
 2018-06-10 21:38:32 +08:00
Nicolas Goaziou 1bfde769f6
gnu: musescore: Fix build against Qt 5.11. 
* gnu/packages/music.scm (musescore)[arguments]: Remove Webkit support, since
  it is replaced with Qt WebEngine in Qt 5.11.  Add missing include line.
[inputs]: Remove "qtwekbit".
 2018-06-10 13:47:25 +02:00
Alex Vong 09b21b77cc
gnu: heimdal: Update to 7.5.0. 
* gnu/packages/kerberos.scm (heimdal): Update to 7.5.0.
[source]: Update source uri.  Remove patches.
[arguments]: Adjust #:configure-flags and build phases accordingly.
[inputs]: Add sqlite.
[native-inputs]: Add texinfo and unzip.
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
  gnu/packages/patches/heimdal-CVE-2017-11103.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
 2018-06-10 16:00:45 +08:00
Kei Kebreau b7e2fcf05e
gnu: milkytracker: Update to 1.02.00. 
* gnu/packages/music.scm (milkytracker): Update to 1.02.00.
 2018-06-09 18:32:47 -04:00
Leo Famulari 65956ad352
gnu: GnuPG 1.4: Fix CVE-2018-12020. 
* gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg-1)[source]: Use it.
 2018-06-09 17:50:03 -04:00
Julien Lepiller 5aa4ea6a2b
gnu: Add maven-resolver-provider. 
* gnu/packages/maven.scm (maven-resolver-provider): New variable.
 2018-06-09 23:25:35 +02:00
Julien Lepiller b218504026
gnu: Add maven-shared-utils. 
gnu/packages/maven.scm (maven-shared-utils): New variable.
 2018-06-09 23:25:26 +02:00
Julien Lepiller 18736663ed
gnu: Add maven-repository-metadata. 
* gnu/packages/maven.scm (maven-repository-metadata): New variable.
 2018-06-09 23:25:24 +02:00
Julien Lepiller 90fe8797cd
gnu: Add maven-resolver-impl. 
* gnu/packages/maven.scm (maven-resolver-impl): New variable.
 2018-06-09 23:25:21 +02:00
Julien Lepiller 516db3b97a
gnu: Add maven-model-builder. 
* gnu/packages/maven.scm (maven-model-builder): New variable.
 2018-06-09 23:25:18 +02:00
Julien Lepiller 3a5572ae76
gnu: Add maven-settings-builder. 
* gnu/packages/maven.scm (maven-settings-builder): New variable.
 2018-06-09 23:25:16 +02:00
Julien Lepiller 18110e45a6
gnu: Add maven-settings. 
* gnu/packages/maven.scm (maven-settings): New variable.
 2018-06-09 23:25:15 +02:00
Julien Lepiller f084641a01
gnu: Add maven-builder-support. 
* gnu/packages/maven.scm (maven-builder-support): New variable.
 2018-06-09 23:25:13 +02:00
Julien Lepiller d55503a6ab
gnu: Add maven-model. 
* gnu/packages/maven.scm (maven-model): New variable.
 2018-06-09 23:25:11 +02:00
Julien Lepiller 458687d586
gnu: Add maven-artifact. 
* gnu/packages/maven.scm (maven-artifact): New variable.
* gnu/packages/patches/maven-generate-component-xml.patch: New file.
* gnu/packages/patches/maven-generate-javax-inject-named.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add them.
 2018-06-09 23:24:52 +02:00
Julien Lepiller 816db9668c
gnu: po4a: Update to 0.53. 
* gnu/packages/gettext.scm (po4a): Update to 0.53.
[source]: Update to newer github source location.
[arguments]: Disable two failing tests.
 2018-06-09 23:08:13 +02:00
Efraim Flashner 8fc55f36c4
gnu: terminology: Update to 1.2.1. 
* gnu/packages/enlightenment.scm (terminology): Update to 1.2.1.
 2018-06-09 23:01:17 +03:00
Efraim Flashner 216c726673
gnu: gnupg: Update to 2.2.8 (fixes CVE-2018-12020). 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.8.
 2018-06-09 22:46:22 +03:00
Christopher Baines 5bf37e9c38
gnu: openttd: Add patch to fix compilation. 
* gnu/packages/games.scm (openttd)[source]: Add a unreleased upstream patch to
fix building OpenTTD with ICU 61.
 2018-06-09 12:25:32 +01:00
Christopher Baines aa7587633b
gnu: rhythmbox: Add a unreleased patch from upstream. 
* gnu/packages/gnome.scm (rhythmbox)[source]: Add patch from the upstream Git
repository, as without this, the package fails to build.
 2018-06-09 11:11:28 +01:00
Ludovic Courtès cdc5b9320f
system: Honor ~/.config/guix/current in /etc/profile. 
* gnu/system.scm (operating-system-etc-service)[profile]: Add
~/.config/guix/current/share/info to INFOPATH.  Treat ~/.guix-profile
and ~/.config/guix/current in the same way.
 2018-06-09 12:02:28 +02:00
宋文武 d6fb0985a6
gnu: btrfs-progs: Fix build by disabling tests. 
* gnu/packages/linux.scm (btrfs-progs)[#:arguments]: Add '#:tests? #f'.
 2018-06-09 17:18:27 +08:00
宋文武 927846b3ab
gnu: lxc: Update to 3.0.1. 
* gnu/packages/virtualization.scm (lxc): Update to 3.0.1.
 2018-06-09 15:45:16 +08:00
Rutger Helling 945b119fac
gnu: nzbget: Update to 20.0. 
* gnu/packages/networking.scm (nzbget): Update to 20.0.
 2018-06-09 02:30:07 +02:00
Nicolas Goaziou c8b2fd2866
gnu: mame: New variable. 
* gnu/packages/emulators.scm (mame): New variable.
 2018-06-09 00:20:00 +02:00
Nicolas Goaziou d597dda6e0
gnu: asio: New variable. 
* gnu/packages/networking.scm (asio): New variable.
 2018-06-09 00:20:00 +02:00
Oleg Pykhalov da23cc000e
gnu: Add emacs-ivy-yasnippet. 
* gnu/packages/emacs.scm (emacs-ivy-yasnippet): New public variable.
 2018-06-08 23:19:38 +03:00
Gábor Boskovits c315d37058
gnu: exim: Add libnsl input. 
* gnu/packages/mail.scm (exim)[inputs]: Add libnsl.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2018-06-08 22:20:28 +03:00
Oleg Pykhalov ca82bdfdfb
gnu: twitchy: Install 'rofi-twitchy'. 
* gnu/packages/video.scm (twitchy): Install 'rofi-twitchy'.
 2018-06-08 20:30:29 +03:00
Ricardo Wurmus cbc1c27b67
gnu: rcas-web: Update to 0.0.5. 
* gnu/packages/bioinformatics.scm (rcas-web): Update to 0.0.5.
 2018-06-08 17:39:24 +02:00
宋文武 0d4c2d35af
services: dnsmasq-service-type: Add default configuration and description. 
* gnu/services/dns.scm (dnsmasq-service-type)
[default-value, description]: New fields.
 2018-06-08 23:32:49 +08:00
宋文武 c061eb587c
services: dnsmasq: Use 'negative-cache?' instead of 'no-negcache?'. 
The 'no-negcache?' option is mapped to the '--no-negcache' command-line
argument directly, but we're in the scheme world, where the general guideline
is to avoid double-negations in identifiers.

* gnu/services/dns.scm <dnsmasq-configuration>: Replace the 'no-negcache?'
field with 'negative-cache?'.
* doc/guix.texi (DNS Services)[Dnsmasq Service]: Adjust accordingly.
 2018-06-08 23:32:49 +08:00
Kei Kebreau 129948dcbd
gnu: debootstrap: Substitute chroot in 'patch-source' phase. 
* gnu/packages/debian.scm (debootstrap)[arguments]: In 'patch-source' phase,
substitute chroot in the debootstrap script file.
[inputs]: Add coreutils.
 2018-06-08 11:07:51 -04:00
Rouby Pierre-Antoine ad3a580716
gnu: hpcguix-web: Update to commit '87cb516'. 
* gnu/packages/web.scm (hpcguix-web): Update to commit '87cb516'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-08 17:04:24 +02:00
Pierre Neidhardt daa9e89d56
gnu: Add emacs-helm-flycheck. 
* gnu/packages/emacs.scm (emacs-helm-flycheck): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-08 17:04:24 +02:00
Pierre Neidhardt 49fd039217
gnu: Add emacs-helm-exwm. 
* gnu/packages/emacs.scm (emacs-helm-exwm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-08 17:04:23 +02:00
Pierre Neidhardt 5a949f5b30
gnu: Add emacs-helm-emms. 
* gnu/packages/emacs.scm (emacs-helm-emms): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-08 17:04:23 +02:00
Pierre Neidhardt 0b4e4efe97
gnu: Add emacs-helm-descbinds. 
* gnu/packages/emacs.scm (emacs-helm-descbinds): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-08 17:04:23 +02:00
Pierre Neidhardt 3540c6eb2b
gnu: Add emacs-helm-company. 
* gnu/packages/emacs.scm (emacs-helm-company): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-08 17:04:23 +02:00
Pierre Neidhardt 2dcea9b446
gnu: Add emacs-google-translate. 
* gnu/packages/emacs.scm (emacs-google-translate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-08 17:04:23 +02:00
Pierre Neidhardt a62d872fdf
gnu: Add emacs-gif-screencast. 
* gnu/packages/emacs.scm (emacs-gif-screencast): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-08 17:04:23 +02:00
Tobias Geerinckx-Rice fafeeaa233
gnu: ruby-rack-protection: Update to 2.0.2. 
* gnu/packages/ruby.scm (ruby-rack-protection): Update to 2.0.2.
 2018-06-08 16:00:18 +02:00
Tobias Geerinckx-Rice d2a48984fc
gnu: r-fastcluster: Update to 1.1.25. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.25.
 2018-06-08 16:00:18 +02:00
Tobias Geerinckx-Rice a1eabab1a3
gnu: opensmtpd: Clarify phase name. 
* gnu/packages/mail.scm (opensmtpd)[arguments]: Rename
‘install-compatibilitymode’ to ‘install-compatibility-links’ and avoid
needless abbrevs while at it.
 2018-06-08 16:00:17 +02:00
Tobias Geerinckx-Rice 19fed04915
gnu: opensmtpd: Patch FHS assumptions. 
This fixes the following failure...

  # smtpctl show message 9275c3fbeccbae93
  execl: No such file or directory

...due to the absence of ‘/bin/cat’ on GuixSD.

* gnu/packages/mail.scm (opensmtpd)[arguments]: Add
‘patch-FHS-file-names’ phase.
 2018-06-08 16:00:17 +02:00
Oleg Pykhalov 2dfb9bbf23
gnu: duplicity: Update to 0.7.17. 
* gnu/packages/backup.scm (duplicity): Update to 0.7.17.
 2018-06-08 16:25:44 +03:00
Oleg Pykhalov c0888cefdf
gnu: Add python-fasteners. 
* gnu/packages/python.scm (python-fasteners, python2-fasteners): New
variables.
 2018-06-08 16:25:44 +03:00
Ludovic Courtès fb126314f8
vm: 'iso9660-image' uses a local /tmp. 
Fixes <https://bugs.gnu.org/31752>.
Regression introduced in commit 8c9bf2946a.

* gnu/system/vm.scm (iso9660-image): Pass #:file-systems to
'expression->derivation-in-linux-vm'.
 2018-06-08 15:23:39 +02:00
Ludovic Courtès 50e53c1c67
vm: 'expression->derivation-in-linux-vm' takes a #:file-systems parameter. 
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Add
 #:file-systems and use it instead of %LINUX-VM-FILE-SYSTEMS.
 2018-06-08 15:23:39 +02:00
Ludovic Courtès 849a1399ca
gnu: doxygen: Work around GCC ICE on armhf-linux. 
Reported by Mark H Weaver <mhw@netris.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=31708#10>.

* gnu/packages/patches/doxygen-gcc-ice.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/documentation.scm (doxygen)[inputs]: Add "gcc-ice-patch"
on armhf-* only.
[arguments]: Add 'apply-gcc-patch' phase on armhf-* only.
 2018-06-08 15:23:39 +02:00
宋文武 cd8ece22bf
gnu: redis: Update to 4.0.9. 
* gnu/packages/database.scm (redis): Update to 4.0.9.
 2018-06-08 20:27:30 +08:00
Paul Garlick 0b88f7e7a7
gnu: ikiwiki: Add inputs for CGI script and remove duplicate input. 
* gnu/packages/web.scm (ikiwiki)[inputs]: Add perl-cgi-formbuilder and
perl-db-file.  Remove perl-uri duplicate.  Sort 'perl-*' inputs
alphabetically.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-06-08 20:27:30 +08:00
Paul Garlick f52de1e17f
gnu: Add perl-cgi-formbuilder. 
* gnu/packages/web.scm (perl-cgi-formbuilder): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-06-08 20:27:30 +08:00
Mark H Weaver 0b2fd1600f
gnu: linux-libre@4.9: Update to 4.9.107. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.107.
 2018-06-07 23:38:28 -04:00
Mark H Weaver b09dc3b911
gnu: linux-libre@4.4: Update to 4.4.136. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.136.
 2018-06-07 23:37:46 -04:00
Tobias Geerinckx-Rice 20860819d6
gnu: ruby-asciidoctor: Update description. 
Synchronise with upstream README.

* gnu/packages/ruby.scm (ruby-asciidoctor)[description]: Add PDF.
 2018-06-07 23:58:26 +02:00
Tobias Geerinckx-Rice 4ee41a6ac1
gnu: inxi: Fix up synopsis & description. 
* gnu/packages/admin.scm (inxi)[synopsis]: Fix typo.
[description]: Use @code{}.
 2018-06-07 23:58:26 +02:00
Tobias Geerinckx-Rice 7a83eb37ad
gnu: libngspice: Update to 28. 
* gnu/packages/engineering.scm (libngspice): Update to 28.
 2018-06-07 23:58:25 +02:00
Tobias Geerinckx-Rice ec425ca3a6
gnu: libngspice: Use C-locale date format. 
* gnu/packages/engineering.scm (libngspice): Use a more standard
(C-locale) date format when forging timestamps.
 2018-06-07 23:57:39 +02:00
Tobias Geerinckx-Rice 10ee03c1df
gnu: python-pyxdg: Return #t from phases. 
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Substitute
INVOKE for SYSTEM*.
 2018-06-07 23:57:39 +02:00
Tobias Geerinckx-Rice 5f82a9d5cc
gnu: seabios: Return #t from all phases. 
* gnu/packages/firmware.scm (seabios)[arguments]: Return #t from
the ‘install’ phase.
 2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice edf075987c
gnu: gnuastro: Add TIFF support. 
This adds ~3.6 MiB (3.6%) to gnuastro's now-103.9 MiB closure.

* gnu/packages/astronomy.scm (gnuastro)[inputs]: Add libtiff and zlib.
 2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice 33031faa4e
gnu: xmlsec: Update to 1.2.26. 
* gnu/packages/xml.scm (xmlsec): Update to 1.2.26.
 2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice 6d727bf4c7
gnu: xcalib: Update to 0.10. 
* gnu/packages/xdisorg.scm (xcalib): Update to 0.10.
[home-page]: Switch to new upstream.
[source]: Use GIT-FETCH.  Add xcalib-update-man-page.patch.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old build system's arguments.
[inputs]: Add libxrandr.
 2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice d35135fa9e
gnu: perl-net-http: Update to 6.18. 
* gnu/packages/web.scm (perl-net-http): Update to 6.18.
 2018-06-07 23:57:37 +02:00
Tobias Geerinckx-Rice c727262d5f
gnu: perl-cgi: Update to 4.38. 
* gnu/packages/web.scm (perl-cgi): Update to 4.38.
 2018-06-07 23:57:37 +02:00
Danny Milosavljevic 5e88194661
gnu: qucs: Patch bootstrapping scripts. 
* gnu/packages/engineering.scm (qucs)[arguments]<#:phases>[patch-bootstrap]:
New phase.
 2018-06-07 23:23:40 +02:00
Theodoros Foradis 394b89ae04
gnu: qucs-s: Update to 0.0.20. 
* gnu/packages/engineering.scm (qucs-s): Update to 0.0.20.
[arguments]: Modify patch-paths phase to work with version 0.0.20.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-06-07 23:23:40 +02:00
Theodoros Foradis fc3c88ec9c
gnu: lapack-3.5: Delete package. 
* gnu/packages/maths.scm (lapack-3.5): Delete package.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-06-07 23:23:40 +02:00
Theodoros Foradis ac04601a82
gnu: xyce-serial: Update to 6.8. 
* gnu/packages/engineering.scm (xyce-serial): Update to 6.8.
[inputs]: Replace lapack-3.5 with lapack.
* gnu/packages/engineering.scm (xyce-prallel):
[arguments]: Update configure flags to work with 6.8 version.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-06-07 23:23:40 +02:00
Theodoros Foradis d73482b408
gnu: trilinos-serial-xyce: Update to 12.12.1. 
* gnu/packages/engineering.scm (trilinos-serial-xyce): Update to 12.12.1.
[arguments]: Add delete-tribits phase.
[inputs]: Replace lapack-3.5 with lapack.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-06-07 23:23:40 +02:00
Theodoros Foradis ecf8d2a935
gnu: libngspice: Update to 27. 
* gnu/packages/engineering.scm (libngspice): Update to 27.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-06-07 23:23:40 +02:00
Theodoros Foradis 4f12a62d18
gnu: qucs: Build from git to fix bug. 
* gnu/packages/engineering.scm (qucs): Add TODO comment.
[source]: Use git commit b4f27d9.
[native-inputs]: Add autoconf, automake, flex and bison.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-06-07 23:23:34 +02:00
Ricardo Wurmus bcc2e0ed2e
gnu: r-rcas: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.6.0.
[source]: Fetch from bioconductor.
[native-inputs]: Remove r-knitr.
[propagated-inputs]: Add r-biocgenerics, r-biostrings, r-cowplot, r-dbi,
r-ggseqlogo, r-knitr, r-pheatmap, r-proxy, r-rsqlite, and r-s4vectors.
 2018-06-07 22:51:00 +02:00
Ricardo Wurmus e67acae706
gnu: Add r-ggseqlogo. 
* gnu/packages/cran.scm (r-ggseqlogo): New variable.
 2018-06-07 22:51:00 +02:00
Rutger Helling 8ec919404f
gnu: Add deprecated-package vulkan-icd-loader. 
* gnu/packages/vulkan.scm (vulkan-icd-loader): New variable.
 2018-06-07 13:34:13 +02:00
Efraim Flashner bb63502f0b
gnu: ovmf: Simplify build. 
* gnu/packages/firmware.scm (ovmf)[arguments]: Change custom 'build-ia32
phase to replace 'build. Remove unneeded substitutions in 'configure,
'build and 'build-x64. Shorten 'build and 'build-x64 phases.
 2018-06-07 12:20:47 +03:00
Ricardo Wurmus 6d095c4cab
gnu: star: Update to 2.6.0c. 
* gnu/packages/bioinformatics.scm (star): Update to 2.6.0c.
[source]: Fetch from git.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus 54179e2463
gnu: libreoffice: Update to 6.0.5.1. 
* gnu/packages/patches/libreoffice-icu.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.0.5.1.
[source]: Add patch.
[inputs]: Add libepubgen and libqxp.
[arguments]: Adjust "prepare-src" phase.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus e47e1f3311
gnu: orcus: Update to 0.13.4. 
* gnu/packages/libreoffice.scm (orcus): Update to 0.13.4.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus a3f2425e5d
gnu: ixion: Update to 0.13.0. 
* gnu/packages/libreoffice.scm (ixion): Update to 0.13.0.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus 4e4dcd476e
gnu: Add libqxp. 
* gnu/packages/libreoffice.scm (libqxp): New variable.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus 38be0f4245
gnu: Add libepubgen. 
* gnu/packages/libreoffice.scm (libepubgen): New variable.
 2018-06-07 11:09:54 +02:00
Adam Zimmerman d6dd64af37
gnu: opensmtpd: Fix crash on table authentication. 
* gnu/packages/patches/opensmtpd-fix-crash.patch: New patch.
* gnu/packages/mail.scm (opensmtpd)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2018-06-07 03:57:42 +02:00
Tobias Geerinckx-Rice 6acc671bef
gnu: jbig2dec: Update source and home page URIs. 
The old downloads.ghostscript.com returns a bogus 200 response, while
the new home page lists a different source.

Reported by Gábor Boskovits <boskovits@gmail.com>.

* gnu/packages/image.scm (jbig2dec)[source, home-page]: Update URIs.
 2018-06-07 03:57:41 +02:00
Nicolas Goaziou 4a007e2db9
gnu: scribus: Fix build. 
* gnu/packages/scribus.scm (scribus)[arguments]: Re-introduce fix for
  "ImportError: No module named _sysconfigdata_nd".
 2018-06-07 00:30:13 +02:00