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Author SHA1 Message Date
Mark H Weaver 8344a85e9e
gnu: libxml++: Update to 3.0.1. 
* gnu/packages/gnome.scm (libxml++): Update to 3.0.1.
 2017-01-11 11:32:45 -05:00
Mark H Weaver 2913a8195d
gnu: glibmm: Update to 2.50.0. 
* gnu/packages/glib.scm (glibmm): Update to 2.50.0.
 2017-01-11 11:32:43 -05:00
Mark H Weaver 2b95aed464
gnu: glib: Update to 2.50.2. 
* gnu/packages/glib.scm (glib): Update to 2.50.2.
[inputs]: Add util-linux.
 2017-01-11 11:32:41 -05:00
Mark H Weaver d0d0f8d1de
gnu: mesa: Update to 13.0.3. 
* gnu/packages/gl.scm (mesa): Update to 13.0.3.
 2017-01-11 11:32:40 -05:00
Mark H Weaver b02733d495
gnu: libosinfo: Fix substitute fetching for usb.ids. 
* gnu/packages/qemu.scm (libosinfo)[native-inputs]: Add 'file-name' field to
'origin' record of "usb.ids".  Otherwise, the default file name contains a "?"
which leads to failure to fetch nars from substitute servers.
 2017-01-11 11:32:38 -05:00
David Craven c5edbb9790
gnu: ardour: Add eudev dependency. 
* gnu/packages/audio.scm (ardour)[inputs]: Add eudev.
 2017-01-11 11:23:44 -05:00
David Craven c96cb01a88
Revert "gnu: Add threaded variants of fftw and fftwf for Ardour and mod-host." 
These variants are no longer needed.

Followup to 86f4e9d76a.

This reverts commit 45591fd7fd.
 2017-01-11 11:23:43 -05:00
Ludovic Courtès 9e485ffa1b
gnu: kcrash: Work around race condition when starting Xvfb. 
Sometimes tests would start running before Xvfb is listening.
See <https://hydra.gnu.org/build/1750201>.

* gnu/packages/kde-frameworks.scm (kcrash)[arguments]: In
'start-xorg-server', add 'sleep' call after starting Xvfb.  Pass "Xvfb"
to 'system' instead of its absolute file name.
 2017-01-11 11:23:41 -05:00
Leo Famulari dca73a742c
Revert "gnu: nss: Add comment about test failures in NSS 3.27.2" 
This reverts commit 4f6ff977c2.
 2017-01-11 11:23:39 -05:00
Efraim Flashner 5a52e86eb4
gnu: cairomm: Update to 1.12.2. 
* gnu/packages/gtk.scm (cairomm): Update to 1.12.2.
[source]: Download from cairographics.org.
[home-page]: Use https.
 2017-01-11 11:23:37 -05:00
Efraim Flashner b3822954ea
gnu: cairo: Update to 1.14.8. 
* gnu/packages/gtk.scm (cairo): Update to 1.14.8.
[source]: Use https.
[home-page]: Use https.
 2017-01-11 11:23:36 -05:00
Efraim Flashner 16f6ee9932
gnu: harfbuzz: Update to 1.3.4. 
* gnu/packages/gtk.scm (harfbuzz): Update to 1.3.4.
 2017-01-11 11:23:34 -05:00
Efraim Flashner 51f0592fbf
gnu: poppler: Update to 0.50.0. 
* gnu/packages/pdf.scm (poppler): Update to 0.50.0.
 2017-01-11 11:23:32 -05:00
Efraim Flashner f8489f160b
gnu: cups-filters: Update to 1.13.1. 
* gnu/packages/cups.scm (cups-filters): Update to 1.13.1.
[inputs]: Switch libjpeg-8 to libjpeg.
[arguments]: Disable driverless printing, set location for bash shell.
 2017-01-11 11:23:30 -05:00
David Thompson b4c8c413ca
gnu: mesa: Enable floating point textures. 
* gnu/packages/gl.scm (mesa): Add --enable-texture-float to configure flags.
 2017-01-11 11:23:29 -05:00
Marius Bakke 5e107b22df
gnu: libxpm: Update to 3.5.12. 
* gnu/packages/xorg.scm (libxpm): Update to 3.5.12.
 2017-01-11 11:23:27 -05:00
Tobias Geerinckx-Rice 45e38a07eb
gnu: kmod: Update to 23. 
* gnu/packages/linux.scm (kmod): Update to 23.
 2017-01-11 11:23:25 -05:00
John Darrington 54d8d0fef1
gnu: Patch libxt's default search path. 
* gnu/packages/patches/libxt-guix-search-paths.patch: New file.
* gnu/packages/xorg.scm (libxt) [source]: Add patch.
 2017-01-11 11:23:23 -05:00
Ludovic Courtès 69323016d3
services: wicd: Create /var/run/wpa_supplicant. 
* gnu/services/networking.scm (%wicd-activation): Create
/var/run/wpa_supplicant.
 2017-01-11 11:16:14 +01:00
Leo Famulari 7b903a920c
gnu: eyed3: Update to 0.7.10. 
* gnu/packages/mp3.scm (eyed3): Update to 0.7.10.
 2017-01-11 00:48:48 -05:00
Leo Famulari 541b3f59ae
gnu: beets: Update to 1.4.3. 
* gnu/packages/music.scm (beets): Update to 1.4.3.
 2017-01-11 00:48:47 -05:00
Leo Famulari 653439c6b1
gnu: python-mutagen: Update to 1.36. 
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.36.
 2017-01-11 00:48:44 -05:00
Kei Kebreau 2fbc004f43
gnu: moc: Update to 2.5.2. 
* gnu/packages/music.scm (moc): Update to 2.5.2.
[source](modules, snippet): Remove timestamps from the output.
 2017-01-10 20:30:28 -05:00
Leo Famulari b0a567640c
gnu: cracklib: Fix buffer overflow. 
* gnu/packages/patches/cracklib-fix-buffer-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (cracklib)[source]: Use it.
 2017-01-10 17:52:42 -05:00
Leo Famulari 4b96149d8b
gnu: libtiff: Fix CVE-2016-{10092,10093,10094} and others. 
* gnu/packages/patches/libtiff-CVE-2016-10092.patch,
gnu/packages/patches/libtiff-CVE-2016-10093.patch,
gnu/packages/patches/libtiff-CVE-2016-10094.patch,
gnu/packages/patches/libtiff-assertion-failure.patch,
gnu/packages/patches/libtiff-divide-by-zero-ojpeg.patch,
gnu/packages/patches/libtiff-divide-by-zero-tiffcp.patch,
gnu/packages/patches/libtiff-divide-by-zero-tiffcrop.patch,
gnu/packages/patches/libtiff-divide-by-zero.patch,
gnu/packages/patches/libtiff-heap-overflow-pixarlog-luv.patch,
gnu/packages/patches/libtiff-heap-overflow-tif-dirread.patch,
gnu/packages/patches/libtiff-heap-overflow-tiffcp.patch,
gnu/packages/patches/libtiff-heap-overflow-tiffcrop.patch,
gnu/packages/patches/libtiff-invalid-read.patch,
gnu/packages/patches/libtiff-null-dereference.patch,
gnu/packages/patches/libtiff-tiffcp-underflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[replacement]: New field.
(libtiff/fixed): New variable.
 2017-01-10 17:52:42 -05:00
Marius Bakke 8966c6b439
gnu: notmuch: Update to 0.23.5. 
* gnu/packages/mail.scm (notmuch, python2-notmuch): Update to 0.23.5.
 2017-01-10 23:42:38 +01:00
Marius Bakke 0d11a69f30
gnu: xapian: Update to 1.4.2. 
* gnu/packages/search.scm (xapian): Update to 1.4.2.
 2017-01-10 23:42:38 +01:00
Ludovic Courtès 3c0f7910e4
gnu: gnutls: Replace with 3.5.8 [fixes GNUTLS-SA-2017-{1,2}]. 
* gnu/packages/tls.scm (gnutls-3.5.8): New variable.
(gnutls)[replacement]: New field.
 2017-01-10 23:40:33 +01:00
Marius Bakke 88f2dd1ddf
gnu: rofi: Update to 1.3.1. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.1.
 2017-01-10 22:35:05 +01:00
Ludovic Courtès 39dc70323c
gnu: youtube-dl: Update to 2017.01.10. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.01.10.  Change
URLs to yt-dl.org.
 2017-01-10 22:15:27 +01:00
Ludovic Courtès 082be6d2a1
gnu: e2fsprogs: Remove timestamp from 'libext2fs.info.gz'. 
* gnu/packages/linux.scm (e2fsprogs)[source](snippet): Patch
'doc/Makefile.in' to use the '-n' option of gzip.
 2017-01-10 22:15:26 +01:00
Ludovic Courtès 74d212911e
gnu: e2fsprogs: Use symlinks instead of hard links. 
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Pass
"--enable-symlink-install".
 2017-01-10 22:15:26 +01:00
Leo Famulari 6d3e08d4e8
gnu: Add sysstat. 
* gnu/packages/linux.scm (sysstat): New variable.
 2017-01-10 13:38:35 -05:00
Tobias Geerinckx-Rice d4acb6db2f
gnu: python-click: Update to 6.7. 
* gnu/packages/python.scm (python-click): Update to 6.7.
 2017-01-10 17:36:57 +01:00
Mark H Weaver 3720371580
gnu: linux-libre@4.4: Update hash for fixed upstream tarball. 
The initial upload of linux-libre-4.4.41-gnu.tar.xz was corrupted.

* gnu/packages/linux.scm (linux-libre-4.4)[source]: Update hash.
 2017-01-10 11:04:13 -05:00
Ludovic Courtès 022c977258
gnu: libgit2, python-pygit2: Update to 0.25.1 [security fixes]. 
See <http://www.openwall.com/lists/oss-security/2017/01/10/5>.

* gnu/packages/version-control.scm (libgit2): Update to 0.25.1.
* gnu/packages/python.scm (python-pygit2): Update to 0.25.0.
 2017-01-10 15:49:49 +01:00
David Craven b1a505baf6
system: Add btrfs file system support. 
* gnu/build/file-systems.scm (%btrfs-endianness, btrfs-superblock?,
  read-btrfs-superblock, btrfs-superblock-uuid,
  btrfs-superblock-volume-name, check-btrfs-file-system): New variables.
  (%paritition-label-readers, %partition-uuid-readers): Add btrfs
  readers.
* gnu/system/linux-initrd.scm (linux-modules): Add btrfs modules when a
  btrfs file-system is used.
* gnu/tests/install.scm (%btrfs-root-os %btrfs-root-os-source,
  %btrfs-root-installation-script, %test-btrfs-root-os): New system
  test.
* doc/guix.texi: Adjust accordingly.

Fixes <http://bugs.gnu.org/19280>.
 2017-01-10 12:00:35 +01:00
David Craven f3e44f5cd0
gnu: Add btrfs-progs/static. 
* gnu/packages/linux.scm (btrfs-progs/static): New variable.
 2017-01-10 12:00:34 +01:00
David Craven ab4e939c50
file-systems: Refactor file-system predicates. 
* gnu/build/file-systems.scm (partition-field-reader,
  read-partition-field, %partition-label-readers,
  %partition-uuid-readers, read-partition-label, read-partition-uuid):
  New variables.
  (partition-predicate, partition-label-predicate,
  partition-uuid-predicate, luks-partition-uuid-predicate): Use
  partition field readers.
  (find-partition): New variable.
  (find-partition-by-label, find-partition-by-uuid,
  find-partition-by-luks-uuid): Use find-partition-by.
 2017-01-10 12:00:05 +01:00
David Craven 26905ec8a6
file-systems: Refactor check-file-system. 
* gnu/build/file-systems.scm (check-file-system): Use file-system type
  specific checker.
  (check-ext2-file-system): New variable.
 2017-01-10 11:58:11 +01:00
David Craven 313880c73a
gnu: e2fsck/static: Only copy e2fsck. 
* gnu/packages/linux.scm (e2fsck/static)[arguments]: Only copy e2fsck.
  [synopsis, description]: Adjust accordingly.
 2017-01-10 11:58:11 +01:00
Ricardo Wurmus f03168327f
gnu: Add pcc. 
* gnu/packages/c.scm (pcc): New variable.
 2017-01-10 11:30:42 +01:00
Ben Woodcroft cba53c60d5
gnu: ruby-sqlite3: Update to 1.3.13. 
* gnu/packages/ruby.scm (ruby-sqlite3): Update to 1.3.13.
 2017-01-10 18:40:58 +10:00
Mark H Weaver d33f889dac
gnu: linux-libre: Update to 4.9.2. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.2.
 2017-01-09 22:42:32 -05:00
Mark H Weaver 75fd35b670
gnu: linux-libre@4.4: Update to 4.4.41. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.41.
 2017-01-09 22:41:21 -05:00
Alex Kost 28fd01bceb
gnu: emacs-guix: Update to 0.2.2. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.2.2.
 2017-01-10 00:23:07 +03:00
Alex Kost f6b1dd233d
gnu: emacs-bui: Update to 1.1.0. 
* gnu/packages/emacs.scm (emacs-bui): Update to 1.1.0.
 2017-01-10 00:23:07 +03:00
ng0 5ed962263c
gnu: whois: Update to 5.2.14. 
* gnu/packages/networking.scm (whois): Update to 5.2.14.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-09 16:04:55 -05:00
Leo Famulari 5ba5b4b240
gnu: imagemagick: Update to 6.9.7-3. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-3.
 2017-01-09 14:18:51 -05:00
John Darrington 4f903085ac
Revert "gnu: Update imagemagick to version 7.0.4-3." 
This reverts commit dea228cf12.
 2017-01-09 20:06:26 +01:00
Mathieu Lirzin 04927b6f26
gnu: cuirass: Update to 0.0.1 revision 3. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 3.
[arguments]: Move 'bootstrap' phase before 'configure'.  Disable
"tests/repo.scm" test.
 2017-01-09 18:57:15 +01:00
John Darrington cac19f0df9
gnu: Update aqbanking to version 5.6.12. 
* gnu/packages/gnucash.scm (aqbanking): Update to version 5.6.12.
 2017-01-09 18:55:27 +01:00
John Darrington dea228cf12
gnu: Update imagemagick to version 7.0.4-3. 
* gnu/packages/imagemagick.scm: Update to version 7.0.4-3
 2017-01-09 18:55:22 +01:00
José Miguel Sánchez García 84aafbbb66
gnu: Add nim. 
* gnu/packages/nim.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add nim.scm.
 2017-01-09 18:01:52 +01:00
David Craven 5d18d776d2
gnu: rustc: Retain binutils. 
* gnu/packages/rust.scm (rustc)[arguments]: Retain binutils. Add
  wrap-rustc phase.

Problem reported by Ben Woodcroft <donttrustben@gmail.com>.
 2017-01-09 18:01:52 +01:00
John Darrington 834458f6ff
gnu: Simplify the downloads from http://www.aquamaniac.de 
* gnu/packages/gnucash.scm (aqbanking, gwenhyfar): Remove dummy parameter
from source url.
 2017-01-09 17:50:49 +01:00
Christopher Allan Webber ab4a1731d8
gnu: guile-8sync: Add #t at end of setenv phase. 
* gnu/packages/guile.scm: Add #t at end of setenv phase.
 2017-01-09 09:51:10 -06:00
Christopher Allan Webber c5793e7eb7
gnu: Add guile-8sync. 
* gnu/packages/guile.scm (guile-8sync): New variable.
 2017-01-09 09:41:30 -06:00
Thomas Danckaert 7bbf2e39f7
gnu: hdf4: Update to 4.2.12. 
* gnu/packages/maths.scm (hdf4): Update to 4.2.12.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 15:55:57 +01:00
Maxim Cournoyer 392c26b0d1
gnu: python-pip: Update to 9.0.1 
* gnu/packages/python.scm (python-pip): Update to 9.0.1.
[native-inputs]: Remove.
[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 15:55:57 +01:00
Alex Sassmannshausen 814b18e587
gnu: Add Guile-ICS. 
* gnu/packages/guile.scm (guile-ics): New variable.
 2017-01-09 11:34:09 +01:00
Danny Milosavljevic ee719fba2d
gnu: Add corrode. 
* gnu/packages/haskell.scm (corrode): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 10:44:52 +01:00
ng0 f048f12ba1
gnu: Add dotherside. 
* gnu/packages/qt.scm (dotherside): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 10:33:07 +01:00
ng0 bb0756c7c7
gnu: Add font-google-roboto. 
* gnu/packages/fonts.scm (font-google-roboto): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 10:33:07 +01:00
Mark H Weaver 96404be814
gnu: gdk-pixbuf: Update replacement to 2.36.3. 
* gnu/packages/gtk.scm (gdk-pixbuf/fixed): Update to 2.36.3.
 2017-01-08 23:42:03 -05:00
Mark H Weaver 86c41ec3e4
gnu: icecat: Add fixes from upstream mozilla-esr45. 
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add selected fixes
from the upstream mozilla-esr45 repository.
 2017-01-08 20:36:29 -05:00
Mark H Weaver 989862005a
gnu: icecat: Rename patches that have been assigned CVEs. 
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Rename patches that
have since been assigned CVEs.
 2017-01-08 20:36:27 -05:00
Mark H Weaver b9acdad717
gnu: gdk-pixbuf: Replace with 2.36.2. 
* gnu/packages/gtk.scm (gdk-pixbuf)[replacement]: New field.
(gdk-pixbuf/fixed): New variable.
(package/inherit): New macro.
(gdk-pixbuf+svg): Use 'package/inherit'.
 2017-01-08 20:36:20 -05:00
Clément Lassieur 78cef99b98
gnu: Add Prosody service. 
* gnu/services/messaging.scm: New file.
* gnu/services/configuration.scm: New exported procedures.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/messaging.scm.
* doc/guix.texi (Messaging Services): New section.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-08 23:39:36 +01:00
Clément Lassieur 84bf2a2e74
gnu: prosody: Make config and data files visible to 'prosodyctl'. 
* gnu/packages/messaging.scm (prosody)[arguments]: Add a 'fix-makefile' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-08 23:38:49 +01:00
Clément Lassieur 5b4946180e
gnu: prosody: Add OpenSSL and Coreutils to the PATH of programs. 
* gnu/packages/messaging.scm (prosody)[arguments]: In 'wrap-programs'
phase, add 'openssl' and 'coreutils' to 'PATH'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-08 23:37:06 +01:00
Ludovic Courtès 9e3e972d1e
gnu: Add fprintd. 
* gnu/packages/freedesktop.scm (fprintd): New variable.
 2017-01-08 23:26:47 +01:00
Ludovic Courtès dfb01baec4
gnu: Add libfprint. 
* gnu/packages/freedesktop.scm (libfprint): New variable.
 2017-01-08 23:26:47 +01:00
David Craven ec460a2a37
gnu: font-liberation: Use @item in @enumerate. 
* gnu/packages/fonts.scm (font-liberation)[description]: Use @item.

Followup to 0102fba27c.
 2017-01-08 23:00:55 +01:00
Mark H Weaver 3a3e309975
gnu: ruby-yard: Fix typo in source URI. 
This is a followup to commit 6499893ef8.

* gnu/packages/ruby.scm (ruby-yard)[source][uri]: Fix typo.
 2017-01-08 07:25:45 -05:00
Ben Woodcroft 6499893ef8
gnu: ruby-yard: Update to 0.9.6. 
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.6.
[source]: Use 'GitHub' source.
[arguments]: Run tests without 'Rakefile'.
[native-inputs]: Replace 'ruby-rspec-2' with ruby-rspec'.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-08 11:10:28 +10:00
Mark H Weaver 57fe28a082
gnu: linux-libre: Update to 4.9.1. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.1.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: Delete files.
* gnu/packages/linux-libre-4.9-x86_64.conf,
gnu/packages/linux-libre-4.9-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
 2017-01-07 19:42:36 -05:00
Mark H Weaver 0860081413
gnu: linux-libre@4.4: Update to 4.4.40. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.40.
 2017-01-07 19:42:23 -05:00
Leo Famulari 1c9cea74b4
gnu: python-pygpgme: Fix build failure. 
* gnu/packages/patches/python-pygpgme-fix-pinentry-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[source]: Use it.
 2017-01-07 19:00:58 -05:00
Clément Lassieur 261f56914c
gnu: econnman: Add missing input. 
* gnu/packages/connman.scm (econnman)[inputs]: Add python2-dbus.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-07 23:02:48 +01:00
Alex Griffin 2b84170782
gnu: gnome-mpv: Update to 0.11. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-07 22:55:40 +01:00
Thomas Danckaert e10872cc83
gnu: gpgme: Patch CMake files. 
* gnu/packages/gnupg.scm (gpgme)[arguments]: Substitute '@libsuffix@' by
  '.so'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-07 22:55:40 +01:00
Ludovic Courtès b2859a4fef
gnu: zlib: Fix alternate download URL. 
* gnu/packages/compression.scm (zlib)[source](uri): Update SourceForge URL.
 2017-01-07 22:55:40 +01:00
Leo Famulari 9385f0e9cb
Revert "gnu: nspr: Update to 4.13.1." 
There were many reports that NSS failed to build with this change.

This reverts commit 707c65aad7.
 2017-01-07 15:38:30 -05:00
Ludovic Courtès d7d5050c51
gnu: ao-cad: Point 'LD_LIBRARY_PATH' to Mesa. 
* gnu/packages/engineering.scm (ao)[arguments]: In
'install-guile-bindings', wrap 'ao-guile' to set 'LD_LIBRARY_PATH'.
[inputs]: Add MESA.
 2017-01-07 00:38:03 +01:00
Tobias Geerinckx-Rice a2bd16ff99
gnu: vim: Update to 8.0.0147. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0147.
 2017-01-07 00:26:23 +01:00
Tobias Geerinckx-Rice 0102fba27c
gnu: font-liberation: Use @enumerate in description. 
* gnu/packages/fonts.scm (font-liberation)[description]: Use @enumerate.
 2017-01-07 00:26:22 +01:00
Tobias Geerinckx-Rice b4774d87e4
gnu: fonts: Improve synopses & descriptions. 
* gnu/packages/fonts.scm (font-google-noto, font-hack)[synopsis,
description]: Fix typos, grammar, and general style only.
(font-dejavu, font-terminus, font-wqy-zenhei)[description]: Likewise.
 2017-01-07 00:26:22 +01:00
Tobias Geerinckx-Rice 8837860c66
gnu: fonts: Use install-file where appropriate. 
* gnu/packages/fonts.scm (font-ubuntu, font-dejavu, font-bitstream-vera,
font-gnu-freefont-ttf, font-liberation, font-wqy-zenhei, font-anonymous-pro,
font-google-noto, font-un, font-hack): Substitute the simpler INSTALL-FILE
for every COPY-FILE invoked with redundant arguments.
 2017-01-07 00:26:12 +01:00
Tobias Geerinckx-Rice 9657aeb187
gnu: python-tblib: Properly @end enumerate. 
* gnu/packages/python.scm (python-tblib)[description]: Don't use
‘@end itemize’ to end an ‘@enumerate’ block.
 2017-01-07 00:23:53 +01:00
Leo Famulari aa21c764d6
gnu: python-pycrypto: Fix CVE-2013-7459. 
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
 2017-01-06 13:50:18 -05:00
Leo Famulari 707c65aad7
gnu: nspr: Update to 4.13.1. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.13.1.
 2017-01-06 13:09:05 -05:00
Ricardo Wurmus 3a3bf2f819
gnu: Add r-copywriter. 
* gnu/packages/bioinformatics.scm (r-copywriter): New variable.
 2017-01-06 16:31:19 +01:00
Ricardo Wurmus d407bdb931
gnu: Add r-copyhelper. 
* gnu/packages/bioinformatics.scm (r-copyhelper): New variable.
 2017-01-06 16:31:14 +01:00
Ricardo Wurmus 6193563a36
gnu: Add r-chipseq. 
* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
 2017-01-06 16:31:02 +01:00
David Craven 974e02da76
file-systems: Refactor file system detection logic. 
* gnu/build/file-systems.scm (read-superblock,
  null-terminated-latin1->string): New variables.
  (sub-bytevector): Move to general section.
  (ext2-superblock?, read-ext2-superblock): New variables.
  (ext2-superblock-uuid, ext2-superblock-volume-name): Use
  sub-bytevector and null-terminated-latin1->string.
  (%ext2-sblock-magic, %ext2-sblock-creator-os, %ext2-sblock-uuid,
  %ext2-sblock-volume-name): Inline constants.
  (luks-superblock?, read-luks-header): New variables.
  (%luks-header-size, %luks-magic): Inline.
  (partition-label-predicate, partition-uuid-predicate,
  luks-partition-uuid-predicate): Use new functions.
 2017-01-06 15:06:42 +01:00
Christopher Baines fab2784dbb
gnu: gnome-tweak-tool: Add missing inputs. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[inputs]: Add gnome-desktop
and libsoup.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines adb41527ad
gnu: gnome-tweak-tool: Make propagated-inputs just inputs. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[propagated-inputs]: Merge
with...
[inputs]: ... this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines 9af6bce1e1
gnu: gnome-tweak-tool: Wrap program to set 'GI_TYPELIB_PATH'. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[arguments]: Add
'wrap-program' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines 7ef335b0e8
gnu: gnome-tweak-tool: Use glib-or-gtk-build-system. 
This allows gobject introspection namespaces to be found.

* gnu/packages/gnome.scm (gnome-tweak-tool)[build-system]: Set to
GLIB-OR-GTK-BUILD-SYSTEM.
[arguments]: Use %GLIB-OR-GTK-BUILD-SYSTEM-MODULES in #:imported-modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Ben J Woodcroft dbf9d37114
gnu: bioruby: Update to 1.5.1. 
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1.
 2017-01-06 19:06:07 +10:00
Ben J Woodcroft 0c37e2a3d2
gnu: cd-hit: Update to 4.6.6. 
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6.
 2017-01-06 19:06:03 +10:00
Leo Famulari e50d5b8c9d
gnu: khal: Disable failing tests. 
* gnu/packages/patches/khal-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/calendar.scm (khal): Use it.
 2017-01-06 03:19:40 -05:00
Leo Famulari e0c32fc817
gnu: vdirsyncer: Update to 0.14.1. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.1.
 2017-01-06 03:19:40 -05:00
Leo Famulari 491b78a8e8
gnu: python-icalendar: Update to 3.11.1. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.1.
 2017-01-06 03:19:36 -05:00
Ludovic Courtès fbec5abeef
gnu: gv: Do not propagate Ghostscript. 
* gnu/packages/gv.scm (gv)[propagated-inputs]: Remove.
[arguments]: New field.
[inputs]: Add GHOSTCRIPT/X.
 2017-01-05 23:45:38 +01:00
Alex Kost ec14d2157d
gnu: emacs-smartparens: Update to 1.9.0. 
* gnu/packages/emacs.scm (emacs-smartparens): Update to 1.9.0.
 2017-01-06 00:31:03 +03:00
Alex Kost 922ab34446
gnu: magit: Update to 2.10.0. 
* gnu/packages/emacs.scm (magit, emacs-magit-popup): Update to 2.10.0.
 2017-01-06 00:29:23 +03:00
Alex Kost cfb9026aa5
gnu: emacs-with-editor: Update to 2.5.9. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.9.
 2017-01-06 00:29:23 +03:00
Danny Milosavljevic 6c8a387af2
gnu: Add ghc-markdown-unlit. 
* gnu/packages/haskell.scm (ghc-markdown-unlit): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 18:47:40 +01:00
Tobias Geerinckx-Rice 12c15242f4
gnu: beep: Ignore substitute* return value. 
* gnu/packages/terminals.scm (beep)[arguments]: End 'patch-makefile phase
with truth.
 2017-01-05 17:40:54 +01:00
David Thompson 543bd0eede
gnu: sdl2: Add fcitx input. 
* gnu/packages/sdl.scm (sdl2)[inputs]: Add fcitx.
 2017-01-05 11:27:10 -05:00
David Thompson e0101b54b7
gnu: sdl2: Fix double input events bug. 
* gnu/packages/sdl.scm (sdl2)[inputs]: Add dbus, gblib, and ibus.
 2017-01-05 11:22:32 -05:00
Leo Famulari f537ad0bf3
Revert "gnu: gawk: Don't replace 'sh' reference with 'bash'." 
This commit causes too many rebuilds. It will be re-committed to core-updates.

This reverts commit 5b2834ae79.
 2017-01-05 11:22:07 -05:00
Leo Famulari 5b2834ae79
gnu: gawk: Don't replace 'sh' reference with 'bash'. 
* gnu/packages/gawk.scm (gawk)[arguments]: Use /bin/sh instead of /bin/bash in
'set-shell-file-name' phase.
 2017-01-05 11:06:06 -05:00
Marius Bakke d9d23101ce
gnu: irssi: Update to 1.0.0. 
* gnu/packages/irc.scm (irssi): Update to 1.0.0.
[arguments]: Remove --with-ncurses configure flag.
[native-inputs]: Move 'perl' to ...
[inputs]: ... here.
[home-page]: Use HTTPS.
 2017-01-05 16:44:34 +01:00
Marius Bakke 1bd858cc14
gnu: Fix indentation of some python packages. 
This is a followup to abe2ec73..807a5b32.

* gnu/packages/python.scm (python-snowballstemmer,
  python-sphinx-cloud-sptheme, python-sphinx-alabaster-theme): Fix indentation.
 2017-01-05 16:28:01 +01:00
Danny Milosavljevic 807a5b32bf
gnu: Add python-sphinx-alabaster-theme. 
* gnu/packages/python.scm (python-sphinx-alabaster-theme,
  python2-sphinx-alabaster-theme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:27 +01:00
Danny Milosavljevic 754bfd7019
gnu: Add python-sphinx-cloud-sptheme. 
* gnu/packages/python.scm (python-sphinx-cloud-sptheme,
  python2-sphinx-cloud-sptheme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:27 +01:00
Danny Milosavljevic 89cd988b6c
gnu: Add python-snowballstemmer. 
* gnu/packages/python.scm (python-snowballstemmer,
  python2-snowballstemmer): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:26 +01:00
José Miguel Sánchez García abe2ec735f
gnu: Add beep. 
* gnu/packages/terminals.scm (beep): New variable.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-01-05 13:09:19 +01:00
Tobias Geerinckx-Rice 88a46c9812
gnu: Remove unused module import from (gnu packages mtools). 
This is a follow-up to commit 3b0f2ba46b.

* gnu/packages/mtools.scm: Remove import of (gnu packages python).
 2017-01-05 13:09:19 +01:00
Ben Woodcroft 19e5fb6030
gnu: ruby-nokogiri: Update to 1.7.0.1. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.7.0.1.
 2017-01-05 21:00:51 +10:00
Ben Woodcroft 8e941f2068
gnu: ruby-hoe: Update to 3.16.0. 
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.16.0.
 2017-01-05 20:52:22 +10:00
Leo Famulari 5f0fabec54
gnu: unrtf: Fix CVE-2016-10091. 
* gnu/packages/patches/unrtf-CVE-2016-10091.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/unrtf.scm (unrtf)[source]: Use it.
 2017-01-04 14:42:58 -05:00
Alex Griffin 7a203059d3
gnu: libreoffice: Update to 5.1.6.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.6.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-04 14:37:58 -05:00
David Craven 3dcaa1226d
gnu: ocamlmod: Enable tests. 
Followup to 93eeadf022.

* gnu/packages/ocaml.scm (ocamlmod)[arguments]: Enable tests.

Problem reported by Julien Lepiller <julien@lepiller.eu>.
 2017-01-04 19:10:01 +01:00
David Craven 337273e41f
gnu: ocaml-ounit: Enable tests. 
Followup to 7a76b4afd0.

* gnu/packages/ocaml.scm (ocaml-ounit)[arguments]: Enable tests.

Problem reported by Julien Lepiller <julien@lepiller.eu>.
 2017-01-04 19:10:00 +01:00
Efraim Flashner 9c64f76e8a
gnu: aria2: Update to 1.30.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.30.0.
 2017-01-04 19:15:00 +02:00
Ricardo Wurmus 68f9067324
gnu: inkscape: Update to 0.92.0. 
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/inkscape.scm (inkscape): Update to 0.92.0.
[build-system]: Use "cmake-build-system".
[native-inputs]: Add glib:bin.
[arguments]: Remove obsolete arguments; disable tests.
 2017-01-04 18:06:44 +01:00
Julien Lepiller 6548e53fcb
gnu: Add ocaml-cmdliner. 
* gnu/packages/ocaml.scm (ocaml-cmdliner): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller eb1ba73185
gnu: Add ocaml-mtime. 
* gnu/packages/ocaml.scm (ocaml-mtime): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller 63147e5e1e
gnu: Add ocaml-rresult. 
* gnu/packages/ocaml.scm (ocaml-rresult): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller a359c7277c
gnu: Add ocaml-topkg. 
* gnu/packages/ocaml.scm (ocaml-topkg): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller 704b990c36
gnu: Add ocaml-result. 
* gnu/packages/ocaml.scm (ocaml-result): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller 44c23cb8d8
gnu: Add ocaml-bitstring. 
* gnu/packages/ocaml.scm (ocaml-bitstring): New variable.
* gnu/packages/patches/ocaml-bitstring-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller a5b5bd1d18
gnu: Add ocaml-bisect. 
* gnu/packages/ocaml.scm (ocaml-bisect): New variable.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Add patch.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:10 +01:00
Julien Lepiller 3d598ebd35
gnu: Add ocaml-stringext. 
* gnu/packages/ocaml.scm (ocaml-stringext): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:10 +01:00
Julien Lepiller 0472836fce
gnu: Add ocaml-qtest. 
* gnu/packages/ocaml.scm (ocaml-qtest): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:10 +01:00
Julien Lepiller ff891f10ed
gnu: Add ocaml-frontc. 
* gnu/packages/ocaml.scm (ocaml-frontc): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:10 +01:00
Ludovic Courtès a614ce389f
gnu: Add Guile-Bash. 
* gnu/packages/guile.scm (guile-bash): New variable.
 2017-01-04 16:18:52 +01:00
Julien Lepiller ddf2b503b1
gnu: Add ocaml-zarith. 
* gnu/packages/ocaml.scm (ocaml-zarith): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:05:28 +01:00
Julien Lepiller 93eeadf022
gnu: Add ocamlmod. 
* gnu/packages/ocaml.scm (ocamlmod): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:05:25 +01:00
Julien Lepiller bc2c3bc627
gnu: Add camlzip. 
* gnu/packages/ocaml.scm (camlzip): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:05:06 +01:00
Julien Lepiller 7a76b4afd0
gnu: Add ocaml-ounit. 
* gnu/packages/ocaml.scm (ocaml-ounit): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:04:51 +01:00
Julien Lepiller ad3d730e3a
gnu: camlp4: Install camlp4 META file. 
* gnu/packages/ocaml.scm (camlp4)[arguments]: Install in OCAMLPATH and
  META file.
  (ocaml-findlib)[arguments]: Delete camlp4 META file.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:04:32 +01:00
Julien Lepiller 56f73eadc0
gnu: ocaml: Use a helper function to download from ocaml-forge. 
* gnu/packages/ocaml.scm (ocaml-forge-origin): New procedure.
  (lablgtk)[origin]: Use it.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:03:56 +01:00
Julien Lepiller e6876cb9dc
gnu: Add ocaml-build-system. 
* guix/build/ocaml-build-system.scm: New file.
* guix/build-system/ocaml.scm: New file.
* Makefile.am (MODULES): Add them.
* gnu/packages/ocaml.scm (ocaml)[native-search-paths]: Adjuste OCAMLPATH.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:03:39 +01:00
Julien Lepiller e0ddaa8be3
gnu: camlp4: Compile native version. 
* gnu/packages/ocaml.scm (camlp4)[arguments]: Disable parallel-build.
  Change default target to "all" to compile native and byte version.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:03:16 +01:00
David Craven 2b1f7b83f7
gnu: ocaml: Fix indentation. 
* gnu/packages/ocaml.scm (ocaml): Fix indentation.
 2017-01-04 16:03:07 +01:00
Julien Lepiller 796a17ab01
gnu: ocaml: Add CAML_LD_LIBRARY_PATH search-path. 
* gnu/packages/ocaml.scm (ocaml)[native-search-paths]: Add
  CAML_LD_LIBRARY_PATH.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:03:00 +01:00
Julien Lepiller 8bd10c1082
gnu: ocaml: Add a .file directive to generated .s files. 
* gnu/packages/ocaml.scm (ocaml)[origin]: Add patch.
* gnu/packages/patches/ocaml-Add-a-.file-directive.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:02:38 +01:00
David Craven 1ff755d1d5
gnu: Reorder imports in (gnu packages ocaml). 
* gnu/packages/ocaml.scm: Reorder imports alphabetically.
 2017-01-04 14:07:56 +01:00
David Craven d8e0a08c26
gnu: Use 'license:' prefix in (gnu packages ocaml). 
* gnu/packages/ocaml.scm (ocaml, opam, camlp4, camlp5, hevea, coq,
  proof-general, ocaml-menhir, lablgtk, unison, ocaml-findlib)[license]:
  Add prefix.
 2017-01-04 14:07:56 +01:00
David Craven 3254e1aba9
gnu: Add idris-lens. 
* gnu/packages/idris.scm (idris-lens): New variable.
 2017-01-04 12:11:14 +01:00
David Craven 5a16d828b3
gnu: Add idris-bifunctors. 
* gnu/packages/idris.scm (idris-bifunctors): New variable.
 2017-01-04 12:11:14 +01:00
David Craven 4e17fff386
gnu: Add idris-wl-pprint. 
* gnu/packages/idris.scm (idris-wl-pprint): New variable.
 2017-01-04 12:11:14 +01:00
David Craven ea3b38f1e1
gnu: Add idris-lightyear. 
* gnu/packages/idris.scm (idris-lightyear, idris-default-arguments):
  New variables.
 2017-01-04 12:11:14 +01:00
David Craven ae482ce12d
gnu: idris: Move to (gnu packages idris). 
* gnu/packages/haskell.scm: Move 'idris' to...
* gnu/packages/idris.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add idris.scm.
 2017-01-04 11:51:36 +01:00
David Craven c7a7129c5a
gnu: idris: Update to 0.99. 
* gnu/packages/haskell.scm (idris): Update to 0.99.
 2017-01-04 11:44:07 +01:00
David Craven c0d5b6452b
gnu: Order module imports in (gnu packages haskell) alphabetically. 
* gnu/packages/haskell.scm: Order module imports alphabetically.
 2017-01-04 11:44:07 +01:00
Ricardo Wurmus de793e9a5a
gnu: ghc-language-c: Fix up. 
* gnu/packages/haskell.scm (ghc-language-c): Fix up indentation and
description.
 2017-01-04 11:41:43 +01:00
David Craven 3b7ccbe94c
build-system: cargo: Use correct cargo. 
* gnu/packages/rust.scm (cargo-bootstrap): Make private.
* guix/build-system/cargo.scm (default-cargo): Use cargo.
 2017-01-04 11:29:15 +01:00
David Craven b5a09649db
gnu: Add cargo. 
* gnu/packages/rust.scm (cargo): New variable.
 2017-01-04 11:29:14 +01:00
Danny Milosavljevic 2d2388e243
gnu: Add ghc-language-c. 
* gnu/packages/haskell.scm (ghc-language-c): New variable.
 2017-01-04 11:27:24 +01:00
Leo Famulari 324f4fc559
gnu: mcrypt: Fix patches for CVE-2012-{4409,4527}. 
This fixes CVE-2012-{4409,4527}.

This is a followup to commit fd1461879c.

* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: Apply the patches to the mcrypt
source code.
 2017-01-04 02:46:51 -05:00
Alex Griffin 37e8a2e219
gnu: calibre: Update to 2.76.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.76.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-04 00:00:34 -05:00
Alex Griffin f7e9f1cadc
gnu: feh: Update to 2.18. 
* gnu/packages/image-viewers.scm (feh): Update to 2.18.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin eb5378f902
gnu: bs1770gain: Update to 0.4.12. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.4.12.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin 648733dc14
gnu: dwm: Update to 6.1. 
* gnu/packages/suckless.scm (dwm): Update to 6.1.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin bc47382a5d
gnu: dmenu: Update to 4.6. 
* gnu/packages/suckless.scm (dmenu): Update to 4.6.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Alex Griffin f3a53f3c8f
gnu: slock: Update to 1.4. 
* gnu/packages/suckless.scm (slock): Update to 1.4.
[source] Remove CVE-2016-6866 patch (no longer needed).
* gnu/packages/patches/slock-CVE-2016-6866.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Alex Griffin 8efd807f95
gnu: trash-cli: Update to 0.17.1.1. 
* gnu/packages/shellutils.scm (trash-cli): Update to 0.17.1.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Tobias Geerinckx-Rice 3b40213923
gnu: Add wimlib. 
* gnu/packages/backup.scm (wimlib): New variable.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 835d371f4b
gnu: parallel: Update to 20161222. 
* gnu/packages/parallel.scm (parallel): Update to 20161222.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 0b2a91d8b7
gnu: global: Update to 6.5.6. 
* gnu/packages/code.scm (global): Update to 6.5.6.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 02dadd3827
gnu: nano: Update to 2.7.3. 
* gnu/packages/nano.scm (nano): Update to 2.7.3.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 3b3b60d037
gnu: Use HTTPS for all sourceforge.net home pages. 
* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS.
* gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise.
* gnu/packages/display-managers.scm (slim)[home-page]: Likewise.
* gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise.
* gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix,
ghc-regex-compat)[home-page]: Likewise.
* gnu/packages/image.scm (imlib2)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw)
[home-page]: Likewise.
* gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools)
[home-page]: Likewise.
* gnu/packages/mail.scm (esmtp)[home-page]: Likewise.
* gnu/packages/mp3.scm (ripperx)[home-page]: Likewise.
* gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise.
* gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.
 2017-01-04 05:14:22 +01:00
Christopher Baines 0916dc526e
gnu: Add emacs-git-gutter 
* gnu/packages/emacs.scm (emacs-git-gutter): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 22:46:55 -05:00
Kei Kebreau ea5cc29561
gnu: supertux: Update to 0.5.1. 
* gnu/packages/games.scm (supertux): Update to 0.5.1.
 2017-01-03 18:07:45 -05:00
Leo Famulari f339f2773d
gnu: assword: Update to 0.10. 
* gnu/packages/password-utils.scm (assword): Update to 0.10.
[arguments]: Use Python 3 instead of Python 2.
[inputs]: Use Python 3 variants of inputs. Replace python2-pygpgme with
python-gpg. Remove python2-pygtk. Add python-pygobject.
[native-inputs]: Replace help2man with txt2man.
[arguments]: Remove PYTHONPATH from 'Makefile' in the 'manpage' phase.
 2017-01-03 12:35:45 -05:00
Leo Famulari 7637de2313
gnu: Add python-xdo. 
* gnu/packages/python.scm (python-xdo): New variable.
(python2-xdo): Use package-with-python2.
 2017-01-03 12:35:44 -05:00
Leo Famulari e871c332a0
gnu: python2-xdo: Update to 0.3. 
* gnu/packages/python.scm (python2-xdo): Update to 0.3.
 2017-01-03 12:35:44 -05:00
Leo Famulari e3dd1f0cb8
gnu: Add python-gpg. 
* gnu/packages/gnupg.scm (python-gpg, python2-gpg): New variable.
 2017-01-03 12:35:44 -05:00
Leo Famulari 9e0f16f23f
gnu: gpgme: Update to 1.8.0. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.8.0.
[arguments]: Don't set 'GPG=gpg2' in #:configure-flags. GnuPG-2.x is
installed as 'gpg' on Guix.
 2017-01-03 12:35:44 -05:00
Ludovic Courtès 4d0a3d8e9f
system: grub: Load relevant EFI modules on EFI systems. 
* gnu/system/grub.scm (eye-candy)[setup-gfxterm-body]: Add 'insmod'
invocations when ${grub_platform} is "efi".
 2017-01-03 18:16:01 +01:00
Ludovic Courtès 70c6341110
gnu: Add Zile-on-Guile. 
* gnu/packages/zile.scm (zile-on-guile): New variable.
 2017-01-03 18:16:01 +01:00
Marius Bakke e2c3037427
gnu: pcsc-lite: Update to 1.8.20 [fixes CVE-2016-10109]. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.20.
 2017-01-03 17:15:04 +01:00
Manolis Ragkousis 367f701379
gnu: glibc-hurd: Disable werror. 
* gnu/packages/base.scm (glibc/hurd)[arguments]: Add "--disable-werror".
 2017-01-03 16:00:43 +02:00
Manolis Ragkousis 62596a158b
gnu: Use hurd-triplet? to check if GNU/Hurd. 
* gnu/packages/make-bootstrap.scm (hurd-triplet?): Move it from here..
* gnu/packages/hurd.scm: ..to here. New exported procedure.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)
  [arguments]: Replace string-match.
  [inputs]: Same.
* gnu/packages/cross-base.scm (cross-libc)[native-inputs]: Same.
 2017-01-03 16:00:39 +02:00
Kei Kebreau 6a37872cd2
gnu: chicken: Fix CVE-2016-{6830,6831}. 
* gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
 2017-01-03 08:35:02 -05:00
Kei Kebreau b9b6db45e8
gnu: chicken: Update to 4.11.1. 
* gnu/packages/scheme.scm (chicken): Update to 4.11.1.
 2017-01-03 08:34:54 -05:00
Julien Lepiller d338237d8c
services: nginx: Make service extensible. 
* gnu/services/web.scm (<nginx-configuration>)[server-blocks]: New
field.
(nginx-activation): When CONFIG-FILE is #f, use 'default-nginx-config'.
(nginx-shepherd-service): Likewise.
(nginx-service-type): Add 'compose' and 'extend' fields.
(nginx-service): Change default value of #:server-list to '(), and
default value of #:config-file to #f.
* doc/guix.texi (Web Services): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-03 14:30:44 +01:00
Julien Lepiller 4e9ae301ce
services: nginx: Fix multiple index and server name. 
* gnu/services/web.scm (config-domain-strings, config-index-string): separate
names with a space.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-03 14:30:44 +01:00
Julien Lepiller 3b9b12ef49
services: nginx: Rename "vhost" to "server". 
* gnu/services/web.scm (<nginx-vhost-configuration>): Rename to...
(<nginx-server-configuration>): ... this.
* doc/guix.texi (Web Services): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-03 14:30:44 +01:00
Roel Janssen 7b030c9f9b
gnu: r-plotrix: Update to 3.6-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
 2017-01-03 13:51:05 +01:00
Roel Janssen 0c74399d98
gnu: r-git2r: Update to 0.18.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
 2017-01-03 13:49:18 +01:00
Roel Janssen 807db78fc9
gnu: r-hmisc: Update to 4.0-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
  [propagated-inputs]: Add r-base64enc.
 2017-01-03 13:46:14 +01:00
Roel Janssen 437d064dc5
gnu: r-openssl: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
 2017-01-03 13:39:51 +01:00
Roel Janssen 596fcfac88
gnu: r-jsonlite: Update to 1.2. 
* gnu/packages/web.scm (r-jsonlite): Update to 1.2.
 2017-01-03 13:37:55 +01:00
Roel Janssen da13738ef0
gnu: r-ggplot2: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
 2017-01-03 13:34:53 +01:00
Roel Janssen 407a280103
gnu: r-genomicranges: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.2.
 2017-01-03 13:28:35 +01:00
Roel Janssen ac370a3397
gnu: r-genomeinfodb: Update to 1.10.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.2.
 2017-01-03 12:47:36 +01:00
Efraim Flashner 4fb14fad94
gnu: sudo: Update to 1.8.19p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.19p1.
 2017-01-03 10:12:27 +02:00
Brandon Ludwig b1251a2f96
gnu: arc-theme: Update to 20161119. 
* gnu/packages/gnome.scm (arc-theme): Update to 20161119.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 00:29:42 -05:00
Maxim Cournoyer 6155186838
gnu: gimp: Enable PDF support 
* gnu/packages/gimp.scm (gimp)[inputs]: Add poppler.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 00:18:51 -05:00
Leo Famulari 47932c0d44
gnu: lynx: Update to 2.8.9dev.11 [fixes CVE-2016-9179]. 
* gnu/packages/lynx.scm (lynx): Update to 2.8.9dev.11.
 2017-01-02 23:52:12 -05:00
Leo Famulari b3e2ea8d48
gnu: Add sonic. 
* gnu/packages/speech.scm (sonic): New variable.
 2017-01-02 18:03:10 -05:00
Mathieu OTHACEHE 5819431c59
gnu: Add cmst. 
* gnu/packages/connman.scm (cmst): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-02 22:55:33 +01:00
Mathieu OTHACEHE 125e3cdece
gnu: connman: Add dependency on polkit. 
* gnu/packages/connman.scm (connman)[arguments]: Add "--enable-polkit".
[inputs]: Add POLKIT.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-02 22:55:33 +01:00
Efraim Flashner 832d60dc01
gnu: mpv: Update to 0.23.0. 
* gnu/packages/video.scm (mpv): Update to 0.23.0.
 2017-01-02 21:48:49 +02:00
Efraim Flashner 8d2de491e5
gnu: openvpn: Update to 2.3.14. 
* gnu/packages/vpn.scm (openvpn): Update to 2.3.14.
 2017-01-02 21:48:48 +02:00
Efraim Flashner 68b3627cd6
gnu: ffmpeg@2.8: Update to 2.8.10. 
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.10.
 2017-01-02 21:48:48 +02:00
Efraim Flashner 4b50daab00
gnu: jasper: Update to 2.0.10. 
* gnu/packages/image.scm (jasper): Update to 2.0.10.
 2017-01-02 21:48:38 +02:00
Ludovic Courtès 1a49a10a94
gnu: fftw: Factorize creation of the --enable-threads variant. 
* gnu/packages/algebra.scm (pthread-variant): New procedure.
(fftw-with-threads, fftwf-with-threads): Use it.
 2017-01-02 14:54:24 +01:00
Ludovic Courtès 7355634db3
gnu: Disambiguate packages with the same name. 
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): Add
'name' field.
* gnu/packages/llvm.scm (llvm-for-extempore): Likewise.
 2017-01-02 14:54:24 +01:00
Ludovic Courtès 9af076245f
gnu: gfortran: Remove non-'eq?' duplicate of gfortran@4.9. 
* gnu/packages/gcc.scm (gfortran): Turn into an alias for GFORTRAN-4.9.
 2017-01-02 14:54:24 +01:00
Tobias Geerinckx-Rice 1b5ea0922f
gnu: python-s3transfer: Update to 0.1.10. 
* gnu/packages/python.scm (python-s3transfer): Update to 0.1.10.
 2017-01-02 08:37:26 +01:00
Tobias Geerinckx-Rice 1f89fb1691
gnu: python-greenlet: Update to 0.4.11. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.11.
 2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice 3753f2e6e9
gnu: python-mako: Update to 1.0.6. 
* gnu/packages/python.scm (python-mako): Update to 1.0.6.
 2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice af27e845e1
gnu: awscli: Update to 1.11.35. 
* gnu/packages/python.scm (awscli): Update to 1.11.35.
 2017-01-02 08:37:24 +01:00
Tobias Geerinckx-Rice bbb99d6b37
gnu: python-werkzeug: Update to 0.11.15. 
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.15.
 2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice 27f9148e1d
gnu: python-backports-abc: Update to 0.5. 
* gnu/packages/python.scm (python-backports-abc): Update to 0.5.
 2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice d79fa7da1b
gnu: python-decorator: Update to 4.0.10. 
* gnu/packages/python.scm (python-decorator): Update to 4.0.10.
 2017-01-02 08:37:22 +01:00
Tobias Geerinckx-Rice 819939cb94
gnu: python-pycparser: Use ‘modify-phases’ syntax. 
* gnu/packages/python.scm (python-pycparser)[arguments]: Use
‘modify-phases’.
 2017-01-02 08:37:21 +01:00
Tobias Geerinckx-Rice 5043b20dcd
gnu: python-pycparser: Update to 2.17. 
* gnu/packages/python.scm (python-pycparser): Update to 2.17.
 2017-01-02 08:28:28 +01:00
Leo Famulari 0d48ff811f
gnu: beets: Build with Python 3. 
* gnu/packages/music.scm (beets)[arguments]: Build with python@3.
(native-inputs): Use Python-2 variants of all inputs.
(inputs): Use Python-2 variants of all inputs. Remove python-pyechonest.
 2017-01-01 21:06:32 -05:00
Leo Famulari 27ccefc3d2
gnu: beets: Update to 1.4.2. 
* gnu/packages/music.scm (beets): Update to 1.4.2.
 2017-01-01 21:06:24 -05:00
Leo Famulari 2e161eafd8
gnu: python-pyicu: Update to 1.9.5. 
* gnu/packages/python.scm (python-pyicu, python2-pyicu): Update to 1.9.5.
[source]: Use pypi-uri.
 2017-01-01 20:15:06 -05:00
Theodoros Foradis 9a93f57473
gnu: yosys: Update to 0.7. 
* gnu/packages/fpga.scm (yosys): Update to 0.7.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Theodoros Foradis f90f6b683e
gnu: yosys: Add xdot functionality. 
* gnu/packages/fpga.scm (yosys)[inputs]: Add xdot, graphviz and psmisc.
[arguments]: Add 'fix-paths' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Theodoros Foradis abdd28e8c1
gnu: Add xdot. 
* gnu/packages/graphviz.scm (xdot): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Ludovic Courtès 231eddc88a
services: cuirass: Remove 'cuirass-service' procedure. 
* gnu/services/cuirass.scm (<cuirass-configuration>)[specifications]:
Remove default value.
(cuirass-service): Remove.
* doc/guix.texi (Continuous Integration): Adjust accordingly.
 2017-01-01 23:30:31 +01:00
Ludovic Courtès 8de938d59a
services: cuirass: Allow for gexps in specifications. 
* gnu/services/cuirass.scm (<cuirass-configuration>)[specifications]:
Change default value to #~'().
(cuirass-shepherd-service): Remove conditional for "--specifications".
Use 'scheme-file' instead of 'plain-file'.  Change file name to
"cuirass-specs.scm".
* doc/guix.texi (Continuous Integration): Change the example to use a
gexp where #:file refers to a file within Cuirass.  Adjust
documentation.
 2017-01-01 23:30:30 +01:00
Leo Famulari 7be13d0006
gnu: python-ndg-httpsclient: Use pypi-uri. 
* gnu/packages/python.scm (python-ndg-httpsclient, python2-ndg-httpsclient)
[source]: Use pypi-uri.
 2017-01-01 17:01:32 -05:00
Ricardo Wurmus 5dbeccf5b4
gnu: diffoscope: Embed tool references. 
Fixes <http://bugs.gnu.org/25315>.

* gnu/packages/package-management.scm (diffoscope)[inputs]: Add
colordiff and vim.
[arguments]: Add "embed-tool-references" build phase to embed references
to "colordiff", "xxd", and "readelf".
 2017-01-01 21:53:50 +01:00
Alex Vong ed88dd4512
gnu: mariadb: Update to 10.1.20. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.20.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 14:51:04 -05:00
Alex Vong e63b19f509
gnu: mysql: Update to 5.7.17. 
* gnu/packages/databases.scm (mysql): Update to 5.7.17.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 14:45:23 -05:00
Ricardo Wurmus 395bbfdbea
gnu: Add propeller-development-suite. 
* gnu/packages/embedded.scm (propeller-development-suite): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 3ebc86d9bd
gnu: Add spinsim. 
* gnu/packages/embedded.scm (spinsim): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 0a7860c438
gnu: Add spin2cpp. 
* gnu/packages/embedded.scm (spin2cpp): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus c6b96af794
gnu: Add propeller-load. 
* gnu/packages/embedded.scm (propeller-load): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 150e0a1ec6
gnu: Add openspin. 
* gnu/packages/embedded.scm (openspin): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus eb88fbafcd
gnu: Add propeller-toolchain. 
* gnu/packages/embedded.scm (propeller-toolchain): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 0d0079b2c5
gnu: Add proplib. 
* gnu/packages/embedded.scm (proplib): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 68cb27840e
gnu: Add propeller-gcc. 
* gnu/packages/embedded.scm (propeller-gcc): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 2d7c92134e
gnu: Add propeller-binutils. 
* gnu/packages/embedded.scm (propeller-binutils): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 6f5b1c9107
gnu: Add dummy linker for propeller-elf. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for
propeller-elf.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus c26ba570cc
gnu: clisp: Remove timestamps. 
* gnu/packages/lisp.scm (clisp)[arguments]: Add "remove-timestamps"
phase to remove "__DATE__" and "__TIME__".
 2017-01-01 13:55:50 +01:00
Ricardo Wurmus 636c77d066
gnu: clisp: Use modify-phases syntax. 
* gnu/packages/lisp.scm (clisp)[arguments]: Use modify-phases syntax.
 2017-01-01 13:55:50 +01:00
Alex Kost c50dc711a1
gnu: manaplus: Update to 1.6.12.24. 
* gnu/packages/games.scm (manaplus): Update to 1.6.12.24.
 2017-01-01 11:47:08 +03:00
Ben Woodcroft 25d84d3122
gnu: python-dendropy: Update to 4.2.0. 
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-01 16:47:47 +10:00
Ben Woodcroft 322a583fcf
gnu: diamond: Update to 0.8.31. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
 2017-01-01 16:47:47 +10:00
Ludovic Courtès 7fc2d377d1
gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}]. 
* gnu/packages/monitoring.scm (nagios): Update to 4.2.4.
[native-inputs]: New field.
 2016-12-31 20:02:59 +01:00
Tobias Geerinckx-Rice b13a5b4d16
gnu: python-graphql-relay: Update to 0.4.5. 
* gnu/packages/python.scm (python-graphql-relay): Update to 0.4.5.
 2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 0c315fb394
gnu: python-freezegun: Update to 0.3.8. 
* gnu/packages/python.scm (python-freezegun): Update to 0.3.8.
 2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 234ade2d7b
gnu: python-ply: Update to 3.9. 
* gnu/packages/python.scm (python-ply): Update to 3.9.
[source]: Use pypi-uri.
 2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice ab0c342924
gnu: python-pyquery: Update to 1.2.17. 
* gnu/packages/python.scm (python-pyquery): Update to 1.2.17.
 2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice 42734b9a88
gnu: python-click-log: Update to 0.1.8. 
* gnu/packages/python.scm (python-click-log): Update to 0.1.8.
 2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice ae476d01da
gnu: python-ndg-httpsclient: Update to 0.4.2. 
* gnu/packages/python.scm (python-ndg-httpsclient): Update to 0.4.2.
 2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice f165648e1b
gnu: python-ipykernel: Update to 4.5.2. 
* gnu/packages/python.scm (python-ipykernel): Update to 4.5.2.
 2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 45cc957c72
gnu: python-jupyter-core: Update to 4.2.1. 
* gnu/packages/python.scm (python-jupyter-core): Update to 4.2.1.
 2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 594358f5b6
gnu: python2-fastlmm: Update to 0.2.26. 
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.26.
 2016-12-31 16:51:40 +01:00
Tobias Geerinckx-Rice a5f92ca04f
gnu: python-pytz: Update to 2016.10. 
* gnu/packages/python.scm (python-pytz): Update to 2016.10.
 2016-12-31 16:36:20 +01:00
Tobias Geerinckx-Rice bf5e4bc42a
gnu: python-pyyaml: Update to 3.12. 
* gnu/packages/python.scm (python-pyyaml): Update to 3.12.
[source]: Use pypi-uri.
 2016-12-31 15:27:24 +01:00
Tobias Geerinckx-Rice 7d2e758df5
gnu: python-pygments: Update to 2.1.3. 
* gnu/packages/python.scm (python-pygments): Update to 2.1.3.
 2016-12-31 15:27:23 +01:00
Kei Kebreau c055a37c8c
gnu: tiled: Update to 0.18.0. 
* gnu/packages/game-development.scm (tiled): Update to 0.18.0.
 2016-12-30 21:45:51 -05:00
ng0 da62a4a19e
gnu: mc: Partially fix absolute file paths. 
Partially fixes <http://bugs.gnu.org/25273>.

* gnu/packages/mc.scm (mc)[arguments]: Add new phase 'fix-absolutism.
This substitutes absolute file paths with functional file paths.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-31 01:44:04 +01:00
Troy Sankey 0f391063d9
gnu: pius: Update to 2.2.2-0.891687c. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.2-0.891687c.
[inputs]: Change GNUPG-2.0 to GNUPG (2.1).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-31 01:44:04 +01:00
José Miguel Sánchez García 68415aa4e1
gnu: libtermkey: Update to 0.19. 
* gnu/packages/terminals.scm (libtermkey): Update to 0.19.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-12-30 16:15:25 -05:00
Leo Famulari 858b9afeaf
gnu: libpng: Mention CVE-2016-10087. 
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ...
* gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust.
* gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch.
 2016-12-30 14:33:21 -05:00
Mark H Weaver 4037e5f52b
gnu: linux-libre@4.1: Update to 4.1.37. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.37.
 2016-12-30 04:26:11 -05:00
Ben Woodcroft a29929b32c
gnu: multiqc: Update to 0.9. 
Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>.

* gnu/packages/bioinformatics.scm (multiqc): Update to 0.9.
[origin]: Add patch.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-12-30 17:22:43 +10:00
Chris Marusich 95d7d0c57f
gnu: elogind: Enable ACL support. 
* gnu/packages/freedesktop.scm (elogind) [inputs]: Add acl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-29 23:42:23 +01:00
Ludovic Courtès 3547a5effe
services: Add libmtp's udev rules to '%desktop-services'. 
Suggested by Chris Marusich <cmmarusich@gmail.com>.

* gnu/services/desktop.scm (%desktop-services): Add 'mtp' service via
call to 'simple-service'.
 2016-12-29 23:35:42 +01:00
Leo Famulari 87b5209558
gnu: mpd: Install systemd service files. 
* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase.
 2016-12-29 17:28:34 -05:00
Ricardo Wurmus 76b64381cb
gnu: r-genomicfeatures: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.
 2016-12-29 22:24:12 +01:00
Ricardo Wurmus 2f642e5229
gnu: r-biostrings: Update to 2.42.1. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 72c2693b9e
gnu: r-limma: Update to 3.30.7. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 5796af9981
gnu: r-variantannotation: Update to 1.20.2. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 5d3acc0b36
gnu: r-edger: Update to 3.16.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 81a17b61e7
gnu: r-genomeinfodb: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 54d9b568fc
gnu: r-iranges: Update to 2.8.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 86fc9c4a2c
gnu: r-s4vectors: Update to 0.12.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus c8ad8b6976
gnu: r-biocstyle: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.
 2016-12-29 22:24:10 +01:00
Ricardo Wurmus 007ee80277
gnu: r-deseq2: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.
 2016-12-29 22:24:10 +01:00
Ricardo Wurmus d0f0579e6f
gnu: r-annotate: Update to 1.52.1. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.
 2016-12-29 22:24:10 +01:00
Leo Famulari a57495e27a
gnu: khard: Update to 0.11.3. 
* gnu/packages/mail.scm (khard): Update to 0.11.3.
[arguments]: Build with python instead of python-2. Remove
'disable-egg-compression' phase.
[propagated-inputs]: Don't use python-2 variants of propagated-inputs.
 2016-12-29 16:12:13 -05:00
Ricardo Wurmus 35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus 28c041afe8
gnu: Add r-plogr. 
* gnu/packages/statistics.scm (r-plogr): New variable.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus ab607061cd
gnu: r-hmisc: Update to 4.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 0811f0f9d2
gnu: Add r-base64. 
* gnu/packages/statistics.scm (r-base64): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus ca380feb37
gnu: r-rmarkdown: Update to 1.3. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 046e27e3f5
gnu: Add r-rprojroot. 
* gnu/packages/statistics.scm (r-rprojroot): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus b1c1f4d012
gnu: armadillo: Update to 7.600.2. 
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus c729d3dc0e
gnu: r-zoo: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 53941eb7a5
gnu: r-fastcluster: Update to 1.1.22. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3a181dc46e
gnu: r-plotly: Update to 4.5.6. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
 2016-12-29 21:49:11 +01:00