86a9b1633c
gnu: python-internetarchive: Update to 1.7.1.
...
* gnu/packages/web.scm (python-internetarchive): Update to 1.7.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-22 00:00:56 +02:00
58f3d45996
gnu: python-marshmallow: Update to 3.0.0b3.
...
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b3.
2017-08-21 22:54:38 +02:00
4ecab114fd
gnu: python-pylast: Update to 1.9.0.
...
* gnu/packages/python.scm (python-pylast): Update to 1.9.0.
2017-08-21 22:54:38 +02:00
3592a57255
gnu: lollypop: Update to 0.9.244.
...
* gnu/packages/gnome.scm (lollypop): Update to 0.9.244.
2017-08-21 22:54:37 +02:00
9f9d2a723f
gnu: gspell: Update to 1.4.2.
...
* gnu/packages/gnome.scm (gspell): Update to 1.4.2.
2017-08-21 22:54:37 +02:00
3ce16aeac5
gnu: imagemagick: Update to 6.9.9-9.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-9.
2017-08-21 22:48:44 +02:00
51eecee7b9
gnu: feh: Update to 2.19.3.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.19.3.
2017-08-21 22:48:44 +02:00
88648855f8
gnu: perl-net-dns: Update to 1.12.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.12.
2017-08-21 17:38:08 +02:00
46057c0a3f
gnu: zstd: Update to 1.3.1.
...
* gnu/packages/compression.scm (zstd): Update to 1.3.1.
2017-08-21 17:38:07 +02:00
6c171ff47c
gnu: openmpi: Configure without vampirtrace.
...
VT is obsoleted by scorep (not currently packaged) and disabling it reduces
the closure considerably.
* mpi.scm (openmpi)[arguments]: Configure without vampirtrace.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
df981d8b36
gnu: openmpi: Modify configuration to reduce closure.
...
devel-headers are only for building MCA components, produce a large
closure and aren't normally packaged. Only the affinity component of
mpi-ext is useful.
* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure
--with-devel-headers and --enable-mpi-ext=all.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
0d97d3cbff
gnu: openmpi: Remove references to compiler pathnames in "_info" programs.
...
This reduces the closure greatly, but note that the Fortran .mod files are
gfortran version-specific, so there should probably be development packages
for each incompatible version. (The runtime is supposed to be more-or-less
version-independent unless the libgfortran soname changes.) There may still
be a case for a separate runtime output.
* gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
84bf845abc
gnu: valgrind: Add separate "doc" output.
...
* gnu/packages/valgrind.scm (valgrind)[outputs]: New field.
[arguments]: Add 'install-doc' phase.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-08-21 17:04:54 +02:00
327404aeaa
gnu: openmpi: Remove "static" output.
...
--enable-static removes dynamically-loaded MCA components.
* gnu/packages/mpi.scm (openmpi)[outputs]: Remove field.
[arguments]: Don't configure with --enable-static; remove
'move-static-libraries' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
685bef2bd1
gnu: openmpi: Add separate variant with thread-multiple support.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove
"--enable-mpi-thread-multiple".
(openmpi-thread-multiple): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-08-21 17:04:54 +02:00
cf684d87d7
gnu: z3: Build Python bindings.
...
* gnu/packages/maths.scm (z3): Add python bindings.
[build-system]: Change to cmake-build-system.
[arguments]: Remove "changedir" phase. Add "bootstrap" and
"make-test-z3" phases; replace the "check" phase.
Add #:configure-flags. Remove #:test-target.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:53 +02:00
bd2e321061
gnu: augeas: Update to 1.8.1. Fixes CVE-2017-7555.
...
* gnu/packages/augeas.scm (augeas): Update to 1.8.1.
2017-08-21 16:02:23 +03:00
2718a9cd09
Merge branch 'master' into core-updates
2017-08-21 02:40:37 +02:00
e904de7ec1
gnu: gnurl: Update to 7.55.1.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-21 01:05:06 +02:00
1dbd34329b
gnu: vifm: Update to 0.9.
...
* gnu/packages/vim.scm (vifm): Update to 0.9.
[source]: Add alternate uri.
[arguments]: Remove build timestamp. Add phase to install vim plugins
into vim plugin directory. Patch more shebangs.
2017-08-20 23:23:17 +03:00
bda6c35093
gnu: pspp: Update to 1.0.0.
...
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
2017-08-20 21:44:47 +03:00
9c4ce3afac
gnu: perl-test-trap: Update to 0.3.2.
...
* gnu/packages/perl.scm (perl-test-trap): Update to 0.3.2.
[source, version]: Remove 'v' prefix from version field.
2017-08-20 17:33:16 +02:00
7295a0c020
gnu: perl-test-trap: Add missing dependency on Test::Simple.
...
* gnu/packages/perl.scm (perl-test-trap)[native-inputs]: Add PERL-TEST-SIMPLE.
2017-08-20 17:33:16 +02:00
29a3325708
gnu: bundler: Update to 1.15.4.
...
* gnu/packages/ruby.scm (bundler): Update to 1.15.4.
2017-08-20 16:41:39 +02:00
3fa1b08213
gnu: limnoria: Update to 2017.08.18.
...
* gnu/packages/irc.scm (limnoria): Update to 2017.08.18.
2017-08-20 16:41:39 +02:00
6d7d9d9507
gnu: graphicsmagick: Fix CVE-2017-{12935,12936,12937}.
...
* gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Use them.
2017-08-20 08:35:45 -04:00
a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which".
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
2017-08-20 14:00:04 +02:00
92a1cb9285
gnu: powertabeditor: Update to 2.0.0-alpha10.
...
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha10.
[arguments]: Remove "set-target-directories" phase; disable additional tests.
2017-08-20 14:00:04 +02:00
17cddc1714
gnu: Add r-annotationfilter.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-08-20 14:00:04 +02:00
96d36f385c
gnu: Add gnome-default-applications.
...
* gnu/packages/gnome.scm (gnome-default-applications): New public variable.
(gnome): Propagate gnome-default-applications so that nautilus is associated
with folders, not baobab.
2017-08-20 13:11:06 +02:00
a9dbefdc9d
gnu: gnome: Propagate font-dejavu.
...
* gnu/packages/gnome.scm (gnome): Add font-dejavu to propagated inputs, to
provide a better default for "Monospace". Otherwise the terminal looks
horrible and defaults to Nimbus Mono, a Courier-like face.
2017-08-20 13:10:56 +02:00
50631fe933
gnu: gobby: Re-add Gobby 0.4.
...
* gnu/packages/gobby.scm (gobby-0.4): New variable.
2017-08-20 11:30:43 +02:00
63ad9b80c7
gnu: gnome: Propagate more packages.
...
* gnu/packages/gnome.scm (gnome): Add additional dependencies, inspired by
Debian's "gnome-core" package.
2017-08-20 11:16:56 +02:00
2941b347b6
gnu: grub-efi-bootloader: Specialize grub-install invocation.
...
* gnu/bootloader/grub.scm (install-grub-efi): Fix grub-install invocation for
EFI systems.
* gnu/system/examples/bare-bones.tmpl: Use the newer
"bootloader-configuration" syntax.
* gnu/system/examples/desktop.tmpl: Use bootloader-configuration sytax. Also,
use the same label for the LUKS-mapped device and the root partition. Remove
unneeded "title" field for the file-system based on LUKS; as noted in the
manual, the "title" field is ignored for mapped devices.
* gnu/system/examples/lightweight-desktop.tmpl: Use bootloader-configuration,
and use grub-efi-bootloader.
2017-08-20 11:16:42 +02:00
97291c0c7c
gnu: gobby: Update to 0.5.0.
...
* gnu/packages/gobby.scm (gobby): Update to 0.5.0.
[inputs]: Remove libnet6 and obby. Add libinfinity. Sort.
[arguments]: Add move-executable phase.
2017-08-20 10:52:56 +05:30
6a84ec8eb3
gnu: Add libinfinity.
...
* gnu/packages/gobby.scm (libinfinity): New variable.
2017-08-20 10:52:55 +05:30
36ed934dfe
gnu: icedtea@3: Update to 3.5.1.
...
* gnu/packages/java.scm (icedtea-8): Update to 3.5.1.
2017-08-19 18:50:04 -04:00
0c2e2b660d
gnu: icedtea@2: Update to 2.6.11 [security fixes].
...
Fixes CVE-2017-{10053,10067,10074,10081,10087,10089,10090,10096,10101,10102,
10107,10108,10109,10110,10111,10115,10116,10118,10135,10074,10176}.
* gnu/packages/java.scm (icedtea-7): Update to 2.6.11.
2017-08-19 18:50:01 -04:00
7b87132f6e
gnu: libreoffice: Update to 5.3.5.2.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.5.2.
2017-08-19 22:46:03 +02:00
128c9b9269
gnu: perl-www-mechanize: Update source uri.
...
* gnu/packages/web.scm (perl-www-mechanize)[source]: Update to new uri.
2017-08-19 21:52:22 +03:00
7eb09e39ed
gnu: perl-net-server: Update to 2.009.
...
* gnu/packages/web.scm (perl-net-server): Update to 2.009.
2017-08-19 16:43:38 +02:00
68d5906c06
gnu: perl-www-mechanize: Update to 1.86.
...
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.86.
[native-inputs]: Add PERL-TEST-DEEP, PERL-TEST-FATAL, PERL-TEST-OUTPUT and
PERL-TEST-WARNINGS.
[propagated-inputs]: Add PERL-HTML-TREE.
2017-08-19 16:43:37 +02:00
f87c1107d6
gnu: perl: Work around more "dotless @INC" build issues.
...
* gnu/packages/perl.scm (perl-hash-fieldhash,
perl-string-camelcase)[arguments]: Add 'set-perl-search-path' phase.
2017-08-19 16:43:37 +02:00
1cd5f1776d
gnu: perl-moosex-types-datetime: Update to 0.13.
...
* gnu/packages/perl.scm (perl-moosex-types-datetime): Update to 0.13.
2017-08-19 16:43:37 +02:00
55cca6ac61
gnu: perl-plack-middleware-reverseproxy: Provide Module::Install.
...
* gnu/packages/web.scm (perl-plack-middleware-reverseproxy)[native-inputs]:
Add PERL-MODULE-INSTALL.
2017-08-19 16:43:37 +02:00
e121be1e15
gnu: python-netaddr: Update to 0.7.19.
...
* gnu/packages/python.scm (python-netaddr): Update to 0.7.19.
2017-08-19 02:17:43 +02:00
b7585ca3b9
gnu: lz4: Update to 1.8.0.
...
* gnu/packages/compression.scm (lz4): Update to 1.8.0. Fix typo in comment.
[source]: Remove patch.
* gnu/packages/patches/lz4-fix-test-failures.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-19 02:17:42 +02:00
00d9124d40
gnu: lz4: Use recommended home page.
...
* gnu/packages/compression.scm (lz4)[home-page]: Use lz4.org.
2017-08-19 02:17:42 +02:00
865aacc9fa
gnu: Remove libgames-support.
...
It was simply the old name (and version) of libgnome-games-support.
* gnu/packages/gnome.scm (libgames-support): Remove variable. Move the
inherited fields...
(libgnome-games-support): ...to here.
2017-08-19 02:17:41 +02:00
d9f15d7e48
gnu: newsbeuter: Fix CVE-2017-12904.
...
* gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/syndication.scm (newsbeuter)[source]: Use it.
2017-08-18 17:24:47 -04:00
8c0c0c4def
gnu: python-pygit2: Update to 0.26.0.
...
* gnu/packages/python.scm (python-pygit2): Update to 0.26.0.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Skip one
more test. Use unittest.skipIf instead of deleting sections.
2017-08-18 21:33:31 +02:00
1f9c2351d7
gnu: gnome-shell: Update to 3.24.3.
...
* gnu/packages/gnome.scm (gnome-shell): Update to 3.24.3.
2017-08-18 14:55:01 +02:00
cd5db77151
gnu: gnome-control-center: Update to 3.24.3.
...
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.24.3.
2017-08-18 14:55:01 +02:00
d95d6d931e
gnu: gnome-keyring: Update to 3.20.1.
...
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.20.1.
2017-08-18 14:55:00 +02:00
32d00d78dc
gnu: libgnome-games-support: Update to 1.2.2.
...
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.2.2.
2017-08-18 14:55:00 +02:00
9d086c075d
gnu: gjs: Update to 1.48.6.
...
* gnu/packages/gnome.scm (gjs): Update to 1.48.6.
2017-08-18 14:55:00 +02:00
69d0674830
gnu: shotwell: Update to 0.26.3.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.26.3.
2017-08-18 14:54:59 +02:00
7c94a3599e
gnu: totem-pl-parser: Update to 3.10.8.
...
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.10.8.
2017-08-18 14:54:59 +02:00
94793c1d0a
gnu: perl-crypt-openssl-bignum: Update to 0.08.
...
* gnu/packages/tls.scm (perl-crypt-openssl-bignum): Update to 0.08.
2017-08-18 14:54:59 +02:00
598b5481a4
gnu: freerdp: Update inputs.
...
* gnu/packages/rdesktop.scm (freerdp) [native-inputs]: Add libxslt, libxml2
and docbook-xsl.
[inputs]: Add libjpeg, remove gstreamer, gst-plugins-base, libxml2 and
libxslt.
[arguments]: Enable features JPEG and SSE2 (on x86_64), and set up
docbook-xsl.
2017-08-18 14:52:35 +02:00
cc81f1c349
gnu: freerdp: Revert to version 1.1.
...
* gnu/packages/rdesktop.scm (freerdp) [version, source]: Revert to upstream
branch 1.1. [inputs]: Use ffmpeg-2.8.
* gnu/packages/gnome.scm (vinagre): Add patches required to build against
freerdp branch 1.1.
* gnu/packages/patches/vinagre-revert-1.patch,
gnu/packages/patches/vinagre-revert-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-08-18 14:52:35 +02:00
c5a856d551
gnu: xf86-video-siliconmotion: Fix building on aarch64.
...
* gnu/packages/xorg.scm (xf86-video-siliconmotion)[source]: Add patch.
* gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-18 15:50:25 +03:00
d983a1cb8e
gnu: libksysguard: Update to 5.10.4.
...
* gnu/packages/kde.scm (libksysguard ): Update to 5.10.4.
2017-08-18 15:50:23 +03:00
de5a235c79
gnu: kde-framework: Update to 5.37.0.
...
* gnu/packages/kde-frameworks.scm (extra-cmake-modules, attica,
bluez-qt, breeze-icons, kapidox, karchive, kcodecs, kconfig,
kcoreaddons, kdbusaddons, kdnssd, kguiaddons, kil8n, kidletime,
kitemmodules, kplotting, ksyntaxhighlighting, kwayland, kwidgetsaddons,
kwindowsystem, modemmanager-qt, networkmanager-qt, oxygen-icons, solid,
sonnet, threadweaver, kauth, kcompletion, kcrash, kimageformats,
kjobwidgets, knotifications, kpackage, kpty, kunitconversion, baloo,
kactivities, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets,
kdeclarative, kded, kdesignerplugin, kdesu, kemoticons, kglobalaccel,
kiconthemes, kinit, kio, knewstuff, knotifyconfig, kparts, kpeople,
krunner, kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui,
kxmlrpcclient, plasma-framework, kde-framworkintegration,
kdelibs4support, khtml, kjs, kjsembed, kmediaplayer, kross): Update to 5.37.0.
(bluez-qt)[arguments]: Disable tests.
(kcodecs, khtml)[native-inputs]: Add gperf.
(ksyntaxhighlighting)[properties]: New field, add upstream-name.
(kimageformats, baloo)[arguments]: Add phase to disable failing test.
(krunner)[inputs]: Add kwindowsystem.
2017-08-18 15:50:22 +03:00
26ca43bb60
gnu: freeipmi: Update to 1.5.7.
...
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.7.
2017-08-18 15:50:20 +03:00
1286ff6161
gnu: giac-xcas: Update to 1.2.3-57.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-57.
2017-08-18 14:31:06 +02:00
c5361b7c3d
gnu: Add rtl-sdr.
...
* gnu/packages/ham-radio.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ham-radio.scm (rtl-sdr): New variable.
2017-08-18 16:54:58 +05:30
2559401037
gnu: youtube-dl: Update to 2017.08.18.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.18.
2017-08-18 08:11:45 +02:00
2c7321eaa7
gnu: libconfuse: Update to 3.2.1.
...
* gnu/packages/wm.scm (libconfuse): Update to 3.2.1.
2017-08-18 08:11:45 +02:00
623cc34cd2
gnu: rpm: Update to 4.13.0.1.
...
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.1
[source]: Remove patch. Use 'version-major+minor' for url.
* gnu/packages/patches/rpm-CVE-2014-8118.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 21:39:18 -05:00
52d445f130
gnu: Add rss-bridge.
...
* gnu/packages/web.scm (rss-bridge): New variable.
2017-08-18 07:18:04 +05:30
961012a0a0
gnu: Add missing import.
...
This is a followup to d016b60fa3
2017-08-18 00:48:25 +02:00
a099570249
gnu: openmpi: Add RDMA and libfabric support.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
ae5947b0ef
gnu: Add libfabric.
...
* gnu/packages/linux.scm (libfabric): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
3eb7c00038
gnu: libnl: Add "python2" and "python3" outputs.
...
* gnu/packages/linux.scm (libnl)[native-inputs]: Add SWIG and PKG-CONFIG.
[inputs]: Add PYTHON-2 and PYTHON-3.
[outputs]: Add python2, python3.
[arguments]: Add 'install-python' phase.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:27 +02:00
d80a47f2f5
gnu: libnl: Add "doc" output.
...
* gnu/packages/linux.scm (libnl)[native-inputs]: Add doc origin.
[outputs]: New field.
[arguments]: Add 'install-doc' phase. New field.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:27 +02:00
d016b60fa3
gnu: wireshark: Update to 2.4.0.
...
* gnu/packages/networking.scm (wireshark): Update to 2.4.0. Add "libssh",
"libxml2", "qtbase" and "qttools" as inputs. Remove unused "bison", "flex"
and "gtk+" inputs.
2017-08-18 00:17:24 +02:00
9fa0c0e6fa
gnu: libmspack: Update to 0.6 [fixes CVE-2017-{6419,11423}].
...
* gnu/packages/compression.scm (libmspack): Update to 0.6.
2017-08-17 22:32:51 +02:00
2d72ddf529
gnu: linux-libre: Update to 4.12.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.8.
(%linux-libre-hash): Update hash.
2017-08-17 14:41:18 -04:00
1e070766c0
gnu: linux-libre@4.9: Update to 4.9.44.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.44.
2017-08-17 14:40:29 -04:00
821f18719d
gnu: linux-libre@4.4: Update to 4.4.83.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.83.
2017-08-17 14:39:31 -04:00
f2d7a492df
web: Check for the existance of SSL related files.
...
This adds back the previous behaviour of the nginx-service-type, where the
service would check at the time when the configuration is generated if the SSL
certificate and certificate key file exists.
* gnu/services/web.scm (emit-nginx-server-config): Add back check for SSL
related files.
2017-08-17 18:32:27 +01:00
c9aa261be4
gnu: services: Nginx configs can reference store
...
* gnu/services/web.scm (config-domain-strings, config-index-strings): Emit
lists instead of strings.
(emit-nginx-location-config, emit-nginx-server-config)
(emit-nginx-upstream-config): Rename from nginx-location-config,
default-nginx-server-config, and nginx-upstream-config. Emit lists instead of
strings.
(flatten): New helper.
(default-nginx-config): Use flatten helper to write nginx conf. This allows
location configs to reference store values.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-17 18:32:23 +01:00
e9a599cdce
gnu: Add OpenMW.
...
* gnu/packages/game-development.scm (openmw): New variable.
2017-08-17 19:40:33 +03:00
42d0d13de8
gnu: Add mygui.
...
* gnu/packages/game-development.scm (mygui): New variable.
2017-08-17 19:35:28 +03:00
dd75a9a22c
gnu: Add ogre.
...
* gnu/packages/graphics.scm (ogre): New variable.
2017-08-17 19:11:35 +03:00
bf3fa99654
gnu: Add r-methylkit.
...
* gnu/packages/bioinformatics.scm (r-methylkit): New variable.
2017-08-17 18:00:17 +02:00
8a39e4a553
gnu: sassc: Update to 3.4.5.
...
* gnu/packages/web.scm (sassc): Update to 3.4.5.
[arguments]: Add PREFIX to make-flags, disable tests, remove custom install
phase.
2017-08-17 18:00:17 +02:00
f30ff28b96
gnu: mariadb: Update to 10.1.26 [fixes CVE-2017-{3636,3641,3653}].
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.26.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-17 11:40:29 -04:00
05e8a3ef0f
gnu: Add r-ksamples.
...
* gnu/packages/cran.scm (r-ksamples): New variable.
2017-08-17 17:26:13 +02:00
abcb849405
gnu: Add r-suppdists.
...
* gnu/packages/cran.scm (r-suppdists): New variable.
2017-08-17 17:26:12 +02:00
8d22007380
gnu: Add r-energy.
...
* gnu/packages/cran.scm (r-energy): New variable.
2017-08-17 17:26:12 +02:00
6b4a9aec23
gnu: Add r-fitdistrplus.
...
* gnu/packages/cran.scm (r-fitdistrplus): New variable.
2017-08-17 17:26:12 +02:00
521e0703d8
gnu: Add r-limsolve.
...
* gnu/packages/cran.scm (r-limsolve): New variable.
2017-08-17 17:26:12 +02:00
a3e36d3772
gnu: Add r-lpsolve.
...
* gnu/packages/cran.scm (r-lpsolve): New variable.
2017-08-17 17:26:12 +02:00
212f612040
gnu: Add r-qvalue.
...
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
2017-08-17 17:26:12 +02:00
d4a1e918cb
gnu: Add r-fastseg.
...
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
2017-08-17 17:26:11 +02:00
b31e4a9693
gnu: Add r-emdbook.
...
* gnu/packages/cran.scm (r-emdbook): New variable.
2017-08-17 17:26:11 +02:00
97cb349dc1
gnu: r-trimcluster: Update license.
...
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
2017-08-17 17:26:11 +02:00
8c72b83096
gnu: Add r-bbmle.
...
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-08-17 17:26:11 +02:00
d6b156dc04
gnu: Add r-inline.
...
* gnu/packages/cran.scm (r-inline): New variable.
2017-08-17 17:26:11 +02:00
062b6dbd25
gnu: Add r-lmtest.
...
* gnu/packages/cran.scm (r-lmtest): New variable.
2017-08-17 17:26:11 +02:00
58db98c9f2
gnu: Add r-extremes.
...
* gnu/packages/cran.scm (r-extremes): New variable.
2017-08-17 17:26:10 +02:00
28476b4bc0
gnu: Add r-distillery.
...
* gnu/packages/cran.scm (r-distillery): New variable.
2017-08-17 17:26:10 +02:00
6427e62005
gnu: Add r-lmoments.
...
* gnu/packages/cran.scm (r-lmoments): New variable.
2017-08-17 17:26:10 +02:00
e389d10f55
gnu: Add r-rmtstat.
...
* gnu/packages/cran.scm (r-rmtstat): New variable.
2017-08-17 17:26:10 +02:00
b723dedf81
gnu: Add r-rook.
...
* gnu/packages/web.scm (r-rook): New variable.
2017-08-17 17:26:10 +02:00
bc0081e76f
gnu: Add r-sp.
...
* gnu/packages/cran.scm (r-sp): New variable.
2017-08-17 17:26:10 +02:00
3349faecf5
gnu: Add r-proxy.
...
* gnu/packages/cran.scm (r-proxy): New variable.
2017-08-17 17:26:10 +02:00
ac8402072b
gnu: Add r-ggally.
...
* gnu/packages/cran.scm (r-ggally): New variable.
2017-08-17 17:26:09 +02:00
c9c6f4b543
gnu: Add r-progress.
...
* gnu/packages/cran.scm (r-progress): New variable.
2017-08-17 17:26:09 +02:00
71be51d531
gnu: Add r-reshape.
...
* gnu/packages/cran.scm (r-reshape): New variable.
2017-08-17 17:26:09 +02:00
18a16ceb7c
gnu: Add r-prettyunits.
...
* gnu/packages/cran.scm (r-prettyunits): New variable.
2017-08-17 17:26:09 +02:00
49c9c29790
gnu: Add r-ffbase.
...
* gnu/packages/cran.scm (r-ffbase): New variable.
2017-08-17 17:26:09 +02:00
a7f0faa204
gnu: Add r-ff.
...
* gnu/packages/cran.scm (r-ff): New variable.
2017-08-17 17:26:09 +02:00
f2e974e1a2
gnu: Add r-fastmatch.
...
* gnu/packages/cran.scm (r-fastmatch): New variable.
2017-08-17 17:26:09 +02:00
e0268ff2e4
gnu: Add r-getoptlong.
...
* gnu/packages/cran.scm (r-getoptlong): New variable.
2017-08-17 17:26:08 +02:00
d3c67e1b45
gnu: Add r-dendextend.
...
* gnu/packages/cran.scm (r-dendextend): New variable.
2017-08-17 17:26:08 +02:00
0548660420
gnu: Add r-compare.
...
* gnu/packages/cran.scm (r-compare): New variable.
2017-08-17 17:26:08 +02:00
eb60149eee
gnu: Add r-png.
...
* gnu/packages/image.scm (r-png): New variable.
2017-08-17 17:26:08 +02:00
5cc79c9c50
gnu: Add r-powerlaw.
...
* gnu/packages/cran.scm (r-powerlaw): New variable.
2017-08-17 17:25:47 +02:00
2856369fad
gnu: Add r-circlize.
...
* gnu/packages/cran.scm (r-circlize): New variable.
2017-08-17 17:25:47 +02:00
4847a62ea9
gnu: Add r-globaloptions.
...
* gnu/packages/cran.scm (r-globaloptions): New variable.
2017-08-17 17:25:47 +02:00
2bdb5c3f78
gnu: Add r-shape.
...
* gnu/packages/cran.scm (r-shape): New variable.
2017-08-17 17:25:47 +02:00
c69d27db57
gnu: Add r-calibrate.
...
* gnu/packages/cran.scm (r-calibrate): New variable.
2017-08-17 17:25:47 +02:00
33ce12e293
gnu: Add r-auc.
...
* gnu/packages/cran.scm (r-auc): New variable.
2017-08-17 17:25:47 +02:00
4a007ffafe
gnu: Add r-annotationhub.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
2017-08-17 17:25:47 +02:00
5f96f30f5d
gnu: Add r-interactivedisplaybase.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
2017-08-17 17:25:46 +02:00
a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b.
...
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
2017-08-17 18:17:00 +03:00
aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures.
...
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
2017-08-17 18:16:57 +03:00
721e1987d0
gnu: Add mgba.
...
* gnu/packages/games.scm (mgba): New public variable.
2017-08-17 10:56:04 +02:00
a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0.
...
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
2017-08-17 09:12:46 +02:00
e3b861ce38
gnu: python-cython: Update to 0.26.
...
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 06:46:06 +03:00
d6ef422fe7
gnu: Add fbreader.
...
* gnu/packages/ebook.scm (fbreader): New variable.
2017-08-17 02:00:51 +02:00
84a52639c9
gnu: Add liblinebreak.
...
* gnu/packages/ebook.scm (liblinebreak): New variable.
2017-08-17 01:56:38 +02:00
f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3.
...
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
2017-08-16 22:35:11 +02:00
f37995fa20
gnu: python-cryptography: Update to 2.0.3.
...
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
2017-08-16 22:35:10 +02:00
f886e7cab1
gnu: limnoria: Update to 2017.08.03.
...
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
2017-08-16 22:35:10 +02:00
e2a4c13023
gnu: cbatticon: Update to 1.6.6.
...
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
2017-08-16 22:35:10 +02:00
f207984985
gnu: Add gpick.
...
* gnu/packages/image.scm (gpick): New variable.
2017-08-16 21:37:33 +03:00
d0b13d7b9b
gnu: fossil: Update to 2.2.
...
* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
2017-08-16 21:37:32 +03:00
ab1bd285db
gnu: connman: Update to 1.35.
...
* gnu/packages/connman.scm (connman): Update to 1.35.
2017-08-16 21:37:29 +03:00
e664200c0c
gnu: Add ltris.
...
* gnu/packages/games.scm (ltris): New variable.
2017-08-16 11:28:12 -04:00
af4db693db
gnu: Add ghc-gitrev.
...
* gnu/packages/haskell.scm (ghc-gitrev): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
e0ca14c7a8
gnu: Add ghc-geniplate-mirror.
...
* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
298af2a8da
gnu: Add ghc-monadplus.
...
* gnu/packages/haskell.scm (ghc-monadplus): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
005a08e3dc
gnu: Add ghc-fail.
...
* gnu/packages/haskell.scm (ghc-fail): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
1eced2a7a8
gnu: Add ghc-edisoncore.
...
* gnu/packages/haskell.scm (ghc-edisoncore): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
212ae09541
gnu: Add ghc-edisonapi.
...
* gnu/packages/haskell.scm (ghc-edisonapi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
a623fd7fed
gnu: Add ghc-murmur-hash.
...
* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
Oleg Pykhalov