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Author SHA1 Message Date
Ludovic Courtès b013c33f6f
grafts: 'graft-derivation' does now introduce grafts that shadow other grafts. 
Partly fixes <http://bugs.gnu.org/24418>.

* guix/grafts.scm (cumulative-grafts)[graft-origin?]: New procedure.
[dependency-grafts]: Use it in new 'if' around recursive call.
* tests/grafts.scm ("graft-derivation, grafts are not shadowed"): New test.
 2016-10-14 23:31:50 +02:00
Ludovic Courtès d0025d0144
packages: 'package-grafts' applies grafts on replacement. 
Partly fixes <http://bugs.gnu.org/24418>.

* guix/packages.scm (input-graft): Compute 'new' with #:graft? #t.
(input-cross-graft): Likewise.
* tests/packages.scm ("package-grafts, indirect grafts, cross"): Comment
out.
("replacement also grafted"): New test.
 2016-10-14 23:05:41 +02:00
Alex Vong b280e67ca6
gnu: libraw: Update to 0.17.2 [fixes CVE-2015-{8366,8367}]. 
* gnu/packages/photo.scm (libraw): Update to 0.17.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-14 13:24:23 -04:00
Efraim Flashner 4a2798e067
gnu: freeimage: Use 'modify-phases' syntax. 
* gnu/packages/image.scm (freeimage)[arguments]: Use 'modify-phases'
syntax.
 2016-10-14 13:43:12 +03:00
Efraim Flashner 76e8566c1b
gnu: freeimage: Fix CVE-2016-5684. 
* gnu/packages/image.scm (freeimage)[source]: Add patch.
* gnu/packages/patches/freeimage-CVE-2016-5684.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-10-14 13:42:43 +03:00
Hartmut Goebel 0350a8bb1e
gnu: mail: Add notifymuch. 
* gnu/packages/mail.scm (notifymuch): New variable.
 2016-10-14 11:27:14 +02:00
Leo Famulari 34f9582aad
gnu: dbus: Replace with 1.10.12 [security fix]. 
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=98157>
"format string vulnerability processing ActivationFailure messages"

* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus-1.10.12): New variable.
 2016-10-13 22:48:02 -04:00
Ricardo Wurmus a9f55bf218
gnu: Add jack-keyboard. 
* gnu/packages/music.scm (jack-keyboard): New variable.
 2016-10-13 22:50:46 +02:00
Ricardo Wurmus d75e8f5a92
gnu: Add gx-switchless-wah-lv2. 
* gnu/packages/music.scm (gx-switchless-wah-lv2): New variable.
 2016-10-13 22:50:46 +02:00
Ricardo Wurmus 631f817586
gnu: Add gx-slow-gear-lv2. 
* gnu/packages/music.scm (gx-slow-gear-lv2): New variable.
 2016-10-13 22:50:45 +02:00
Ricardo Wurmus 40bffdfa2a
gnu: Add gx-vintage-fuzz-master-lv2. 
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): New variable.
 2016-10-13 22:50:45 +02:00
Ricardo Wurmus 29f632220c
gnu: Add gx-super-fuzz-lv2. 
* gnu/packages/music.scm (gx-super-fuzz-lv2): New variable.
 2016-10-13 22:50:45 +02:00
Ricardo Wurmus 32536f0058
gnu: Add gx-voodoo-fuzz-lv2. 
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): New variable.
 2016-10-13 22:50:45 +02:00
Ricardo Wurmus 894122382e
gnu: Add gx-hyperion-lv2. 
* gnu/packages/music.scm (gx-hyperion-lv2): New variable.
 2016-10-13 22:50:45 +02:00
Ricardo Wurmus 664f677fdc
gnu: Add gx-saturator-lv2. 
* gnu/packages/music.scm (gx-saturator-lv2): New variable.
 2016-10-13 22:50:45 +02:00
Ricardo Wurmus 3eb1a9643b
gnu: Add gx-suppa-tone-bender-lv2. 
* gnu/packages/music.scm (gx-suppa-tone-bender-lv2): New variable.
 2016-10-13 22:50:44 +02:00
Ricardo Wurmus 4d4bfdc29b
gnu: Add gx-push-pull-lv2. 
* gnu/packages/music.scm (gx-push-pull-lv2): New variable.
 2016-10-13 22:50:44 +02:00
Ricardo Wurmus 4d95cd306b
gnu: Add gx-tone-mender-lv2. 
* gnu/packages/music.scm (gx-tone-mender-lv2): New variable.
 2016-10-13 22:50:44 +02:00
Ricardo Wurmus cdc7a021b5
gnu: Add gx-overdriver-lv2. 
* gnu/packages/music.scm (gx-overdriver-lv2): New variable.
 2016-10-13 22:50:44 +02:00
Ricardo Wurmus 85ae347ee7
gnu: Add gx-vbass-preamp-lv2. 
* gnu/packages/music.scm (gx-vbass-preamp-lv2): New variable.
 2016-10-13 22:50:44 +02:00
Ricardo Wurmus 49604680cd
gnu: Add gx-guvnor-lv2. 
* gnu/packages/music.scm (gx-guvnor-lv2): New variable.
 2016-10-13 22:50:43 +02:00
Arun Isaac 71d3ee1cbb
gnu: Add emacs-nginx-mode. 
* gnu/packages/emacs.scm (emacs-nginx-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-10-13 22:32:16 +03:00
ng0 2edbfbf588
gnu: Add emacs-evil. 
* gnu/packages/emacs.scm (emacs-evil): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
 2016-10-13 22:32:04 +03:00
ng0 ce74e52011
gnu: Add emacs-goto-chg. 
* gnu/packages/emacs.scm (emacs-goto-chg): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
 2016-10-13 22:31:51 +03:00
Mark H Weaver 4193567325
Revert "guix: python-build-system: Fix an outdated comment." 
This reverts commit 635a7af45d.
 2016-10-13 15:27:16 -04:00
Hartmut Goebel 635a7af45d
guix: python-build-system: Fix an outdated comment. 
The python-build-system uses phases the build and install, but not
configure. So the old comment was plain wrong since Sept. 2013, when the build
phase has been added.
 2016-10-13 17:22:42 +02:00
Hartmut Goebel 7a8894e803
gnu: python-pathlib: Update description. 
* gnu/packages/python.scm (python-pathlib, python2-pathlib): Update
  description.
 2016-10-13 17:22:42 +02:00
Hartmut Goebel 190ba6c2af
gnu: python-keyring: Update home-page url. 
* gnu/packages/python.scm (python-keyring, python2-keyring): Update home-page
  url.
 2016-10-13 17:22:41 +02:00
Hartmut Goebel 6a8f26a441
gnu: python-pylockfile: Update home-page url. 
* gnu/packages/python.scm (python-pylockfile, python2-pylockfile): Update
  home-page url.
 2016-10-13 17:22:41 +02:00
Hartmut Goebel b02f7a21d1
gnu: python-zope-testing: Strip byte-code and backup-files from source. 
* gnu/package/python.scm (python-zope-testing, python2-zope-testing)[source]:
  Add snippet to strip byte-code and backup-files.
 2016-10-13 17:22:40 +02:00
Hartmut Goebel de585a7e64
gnu: python-pytest-xdist: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-pytest-xdist,
  python2-pytest-xdist)[source]: Add snippet.
 2016-10-13 17:22:40 +02:00
Hartmut Goebel 32d045683d
gnu: python2-pytest-runner, python2-msgpack: Remove duplicate definitions. 
* gnu/packages/python.scm (python2-pytest-runner): Was defined twice, remove
  duplicate definition. (python2-msgpack): Was defined twice, but differently,
  remove the obviously wrong second definition.
 2016-10-13 17:22:39 +02:00
Mark H Weaver c8ed7309f4
git: webkitgtk: Update to 2.14.1. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.
 2016-10-13 06:36:05 -04:00
Mark H Weaver b23ece1d2c
gnu: linux-libre@4.1: Update to 4.1.34. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.34.
 2016-10-13 06:29:14 -04:00
Mark H Weaver 1cc213850a
gnu: graphicsmagick: Update to 1.3.25-1-56c8cae [security fixes]. 
Fixes CVE-2016-7800, CVE-2016-7996, CVE-2016-7997, and several other flaws.

* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.25-1-56c8cae.
[source]: Change method from 'url-fetch' to 'hg-fetch'.  Add 'file-name'.
 2016-10-13 05:49:33 -04:00
Mark H Weaver e98e9f4e85
gnu: imagemagick: Disable tests. 
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Disable tests.
 2016-10-13 05:28:25 -04:00
Mark H Weaver 59929e9849
gnu: imagemagick: Update to 6.9.6-2 [Fixes CVE-2016-{7799,7906}]. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-2.
 2016-10-13 04:28:52 -04:00
Mark H Weaver ab8536e4a8
gnu: ghostscript-with-x: Avoid inheriting replacement field. 
This is a followup to commit 1de17a648f.

* gnu/packages/ghostscript.scm (ghostscript/fixed)[replacement]:
Override inherited value.
 2016-10-13 03:38:03 -04:00
Mark H Weaver 1de17a648f
gnu: ghostscript: Fix CVE-2013-5653 and CVE-2016-{7976,7978,7979,8602}. 
* gnu/packages/patches/ghostscript-CVE-2013-5653.patch,
gnu/packages/patches/ghostscript-CVE-2016-7976.patch,
gnu/packages/patches/ghostscript-CVE-2016-7978.patch,
gnu/packages/patches/ghostscript-CVE-2016-7979.patch,
gnu/packages/patches/ghostscript-CVE-2016-8602.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
(ghostscript/x): Inherit 'ghostscript/fixed'.
 2016-10-13 03:30:21 -04:00
Hartmut Goebel e940a2713d
doc: Add guide on how to specify dependencies for Python packages. 
* doc/guix.texi (Python Modules): New sub-subsection "Specifying
Dependencies".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-12 23:35:43 +02:00
Thomas Danckaert becbbefc9b
gnu: Add hdf4 
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-12 23:35:43 +02:00
Ludovic Courtès 69e7322fdc
build: Make 'assert-no-store-file-names' effective. 
Lack of '-E' made it useless.

* Makefile.am (assert-no-store-file-names): Pass '-E' to grep.  Add
'--exclude' and '--exclude-dir' flags.
 2016-10-12 23:35:43 +02:00
Ludovic Courtès 402bb3b9f7
build: Arrange so temporary .go files are deleted upon SIGINT. 
* build-aux/compile-all.scm: Install SIGINT handler.
 2016-10-12 23:35:41 +02:00
John Darrington eb419bc9fe
gnu: Add NFS related services. 
* gnu/services/nfs.scm (pipefs-service-type): New variable,
(gss-service-type): New variable, (idmap-service-type) New variable.

* doc/guix.texi (Network File System): New node.
 2016-10-12 19:26:10 +02:00
Tobias Geerinckx-Rice ff9c2d819a
gnu: mcelog: Update to 142. 
* gnu/packages/linux.scm (mcelog): Update to 142.
 2016-10-12 18:20:17 +02:00
Tobias Geerinckx-Rice 9c49da5778
gnu: btrfs-progs: Update to 4.8.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.1.
 2016-10-12 18:19:48 +02:00
Mark H Weaver bfb48f4f33
gnu: icecat: Update to 45.3.0-gnu1-beta. Add fixes from Firefox ESR 45.4.0. 
Includes fixes for CVE-2016-5250, CVE-2016-5257, CVE-2016-5261, CVE-2016-5270,
CVE-2016-5272, CVE-2016-5274, CVE-2016-5276, CVE-2016-5277, CVE-2016-5278,
CVE-2016-5280, CVE-2016-5281, and CVE-2016-5284.

* gnu/packages/gnuzilla.scm (mozilla-patch): New procedure.
(icecat): Update to 45.3.0-gnu1.
[source]: Add alternate source URI for the beta release.  Update patches.
[inputs]: Replace 'sqlite' input with a customized sqlite with
SQLITE_ENABLE_DBSTAT_VTAB support.
[native-inputs]: Add 'which'.
* gnu/packages/patches/icecat-avoid-bundled-includes.patch: Rename to...
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: ... and adapt
to version 45.
* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch,
gnu/packages/patches/icecat-CVE-2016-2819.patch,
gnu/packages/patches/icecat-CVE-2016-2821.patch,
gnu/packages/patches/icecat-CVE-2016-2824.patch,
gnu/packages/patches/icecat-CVE-2016-2828.patch,
gnu/packages/patches/icecat-CVE-2016-2831.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
 2016-10-11 12:59:26 -04:00
David Thompson b25f060fbd
gnu: redis: Update to 3.2.4. 
* gnu/packages/databases.scm (redis): Update to 3.2.4.
[arguments]: Add LDFLAGS to #:make-flags to work around missing linker
flag.
 2016-10-11 12:24:57 -04:00
Leo Famulari 65375f74bc
gnu: newt: Update source and home-page URLs. 
* gnu/packages/slang.scm (newt)[source]: Update URL.
[home-page]: Update URL.
 2016-10-11 12:05:40 -04:00
Ben Woodcroft 3dd50d974b
gnu: vsearch: Update to 2.3.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.0.
 2016-10-11 22:29:48 +10:00