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5914 Commits

Author SHA1 Message Date
Federico Beffa d9bc0bf8fa gnu: python2-scikit-image: Use custom 'python2-' packages. 
* gnu/packages/python.scm (python2-scikit-image): Use customized 'python2-'
  versions of 'matplotlib', 'numpy' and 'scipy'.
 2015-12-03 09:22:30 +01:00
Federico Beffa 3cbe7d5e52 gnu: python2-pandas: Use custom 'python2-numpy'. 
* gnu/packages/python.scm (python2-pandas): Do it.
 2015-12-03 09:22:30 +01:00
Federico Beffa 5587253a87 gnu: python2-ipython: Use custom 'python2-numpy'. 
* gnu/packages/python.scm (python2-ipython): Do it.
 2015-12-03 09:22:30 +01:00
Mark H Weaver 084e41c1ac gnu: ffmpeg: Update to 2.8.3 [fixes CVE-2015-{8216,8217,8218,8219}]. 
* gnu/packages/video.scm (ffmpeg): Update to 2.8.3.
 2015-12-02 22:39:12 -05:00
Efraim Flashner 7e006b6899 gnu: freeipmpi: Update to 1.5.1. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.1.
 2015-12-02 20:32:30 +02:00
Federico Beffa 18b3151613 gnu: python-matplotlib: Adjust path to figures in 'info' file. 
* gnu/packages/python.scm (python-matplotlib): Do it.
 2015-12-02 18:21:14 +01:00
Federico Beffa 5d26e542ee gnu: python-ipython: Don't use the bootstrap version of 'python-numpy'. 
* gnu/packages/python.scm (python-ipython): Do it.
 2015-12-02 18:21:13 +01:00
Federico Beffa 1bbc659fd2 gnu: python-matplotlib: Add 'TkAgg' backend and update to version '1.4.3'. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Do it.
* gnu/packages/patches/matplotlib-setupext-tk.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2015-12-02 18:21:13 +01:00
Efraim Flashner 214ed6a39b gnu: opus: Update to 1.1.1. 
* gnu/packages/xiph.scm (opus): Update to 1.1.1.
 2015-12-02 13:31:06 +02:00
Efraim Flashner 59eef6f284 gnu: libbluray: Update to 0.9.2. 
* gnu/packages/video.scm (libbluray): Update to 0.9.2.
 2015-12-02 13:27:53 +02:00
Efraim Flashner b6ab89efb2 gnu: python-six: Update to 1.10.0. 
* gnu/packages/python.scm (python-six): Update to 1.10.0.
[source]: Change uri to pypi format.
 2015-12-01 21:10:55 +02:00
Efraim Flashner b850a6d82d gnu: python-babel: Update to 2.1.1. 
* gnu/packages/python.scm (python-babel): Update to 2.1.1.
[source]: Change uri to pypi format.
 2015-12-01 20:55:06 +02:00
Efraim Flashner 94ce6b4959 gnu: python-oslo.utils: Update to 3.0.0. 
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.0.0.
[source]: Change uri to pypi format.
 2015-12-01 19:52:08 +02:00
Efraim Flashner 278c0efd0a gnu: python-oslo.serialization: Update to 2.0.0. 
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.0.0.
[source]: Change uri to pypi format.
 2015-12-01 19:13:25 +02:00
Efraim Flashner 5788b4b6d1 gnu: python-oslo.i18n: Update to 3.0.0. 
* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.0.0.
[source]: Change uri to pypi format.
 2015-12-01 18:14:56 +02:00
Efraim Flashner e9af5adfd5 gnu: python-oslo.context: Update to 1.0.0. 
* gnu/packages/openstack.scm (python-oslo.context): Update to 1.0.0.
[source]: Change uri to pypi format.
 2015-12-01 17:33:29 +02:00
Efraim Flashner 3bc810a89b gnu: python-tempest-lib: Update to 0.11.0. 
* gnu/packages/openstack.scm (python-tempest-lib): Update to 0.11.0.
 2015-12-01 16:19:58 +02:00
Efraim Flashner 2d531d4efd gnu: python-stevedore: Update to 1.9.0. 
* gnu/packages/openstack.scm (python-stevedore): Update to 1.9.0.
[source]: Change uri to pypi format.
 2015-12-01 16:19:58 +02:00
Efraim Flashner bd52842d3d gnu: python-requests-mock: Update to 0.7.0. 
* gnu/packages/openstack.scm (python-requests-mock): Update to 0.7.0.
[source]: Change uri to pypi format.
 2015-12-01 16:19:58 +02:00
Efraim Flashner a5ff52f8a6 gnu: python-os-client-config: Update to 1.12.0. 
* gnu/packages/openstack.scm (python-os-client-config): Update to 1.12.0.
[source]: Change uri to pypi format.
 2015-12-01 16:19:53 +02:00
Efraim Flashner 56c7ead2f8 gnu: python-debtcollector: Update to 1.0.0. 
* gnu/packages/openstack.scm (python-debtcollector): Update to 1.0.0.
[source]: Change uri to pypi format.
 2015-12-01 16:19:22 +02:00
Efraim Flashner d4e817b1db gnu: python-mox3: Update to 0.12.0. 
* gnu/packages/openstack.scm (python-mox3): Update to 0.12.0.
[source]: Change uri to pypi format.
 2015-12-01 16:19:16 +02:00
Efraim Flashner df372f96a3 gnu: enlightenment: Update to 0.20.0. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.0.
[arguments]: Add '--enable-mount-eeze' to configure-flags.
 2015-12-01 10:26:06 +02:00
Efraim Flashner ccd20fcb7d gnu: python-pbr: Update to 1.8.1. 
* gnu/packages/openstack.scm (python-pbr): Update to 1.8.1.
 2015-11-30 23:20:35 +02:00
Efraim Flashner 5466700fa2 gnu: parallel: Update to 20151122. 
* gnu/packages/parallel.scm (parallel): Update to 20151122.
 2015-11-30 23:11:35 +02:00
Efraim Flashner 44e30a7647 gnu: python2-keyring: Use python2-pycrypto. 
* gnu/packages/python.scm (python2-keyring)[inputs]: Force building
with python2-pycrypto.
 2015-11-30 20:09:12 +02:00
Efraim Flashner 1c0059da41 gnu: python2-pycrypto: Use python2. 
* gnu/packages/python.scm (python2-pycrypto)[inputs]: Force building
with python2.
 2015-11-30 19:06:13 +02:00
Ricardo Wurmus 36f26211bb gnu: openssh: Install ssh-copy-id. 
* gnu/packages/ssh.scm (openssh)[arguments]: Install "ssh-copy-id" and
  documentation.

Fixes <http://bugs.gnu.org/22024>.
Reported by Florian Paul Schmidt <mista.tapas@gmx.net>.
 2015-11-30 14:58:44 +01:00
Ricardo Wurmus a9ee11d5ab gnu: openssh: Use modify-phases syntax. 
* gnu/packages/ssh.scm (openssh)[arguments]: Use modify-phases syntax.
 2015-11-30 14:58:43 +01:00
Ricardo Wurmus 70b002aa1d gnu: Add ruby-tins. 
* gnu/packages/ruby.scm (ruby-tins): New variable.
 2015-11-30 14:41:48 +01:00
Ricardo Wurmus d3b20a02c8 gnu: Add ruby-sdoc. 
* gnu/packages/ruby.scm (ruby-sdoc): New variable.
 2015-11-30 14:41:48 +01:00
Ricardo Wurmus a75bdfcec3 gnu: Add ruby-pry-editline. 
* gnu/packages/ruby.scm (ruby-pry-editline): New variable.
 2015-11-30 14:41:48 +01:00
Ricardo Wurmus 2f9e0b68e1 gnu: Add ruby-ci-reporter. 
* gnu/packages/ruby.scm (ruby-ci-reporter): New variable.
 2015-11-30 14:41:48 +01:00
Ricardo Wurmus fe1ddad54a gnu: Add ruby-atoulme-saikuro. 
* gnu/packages/ruby.scm (ruby-atoulme-saikuro): New variable.
 2015-11-30 14:41:48 +01:00
Ricardo Wurmus a84fa2ad42 gnu: Add ruby-simplecov. 
* gnu/packages/ruby.scm (ruby-simplecov): New variable.
 2015-11-30 14:41:48 +01:00
Ricardo Wurmus b0cf606f75 gnu: Add sparsehash. 
* gnu/packages/crypto.scm (sparsehash): New variable.
 2015-11-30 14:41:48 +01:00
Ricardo Wurmus 0149354d21 gnu: Add cereal. 
* gnu/packages/serialization.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-11-30 14:41:48 +01:00
Efraim Flashner dbd3a91f54 gnu: xorriso: Update to 1.4.2. 
* gnu/packages/cdrom.scm (xorriso): Update to 1.4.2.
 2015-11-30 10:41:19 +02:00
Ludovic Courtès 02f0c3b28e gnu: python: Move tkinter to "tk" output. 
* gnu/packages/python.scm (python-2)[outputs]: New field.
[arguments]: Add 'move-tk-inter' phase.
(python2-minimal, python-minimal, wrap-python3)[outputs]: New field.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès d2cc9c7cfd gnu: python: Clarify and shorten the list of built-time modules. 
* gnu/packages/python.scm (python-2)[arguments]: Make the #:modules list
  shorter.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès 5b4e2791ef gnu: python: Do not record configure flags. 
This reduces the number of run-time dependencies of python-2 from 25 to
15, corresponding only to ~4 MiB.

* gnu/packages/python.scm (python-2)[arguments]: Add
  'do-not-record-configure-flags' phase.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès c5a05e3143 gnu: python: Factorize configure flags with minimal variants. 
* gnu/packages/python.scm (python2-minimal, python-minimal)[arguments]:
  Reuse the inherited configure flags, and just add
  --without-system-ffi.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès 9820a6d4a0 gnu: python: Make 'sys.version' deterministic. 
* gnu/packages/patches/python-2-deterministic-build-info.patch,
  gnu/packages/patches/python-3-deterministic-build-info.patch: New
  files.
* gnu/packages/python.scm (python-2, python): Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès a665996f58 gnu: python: Set SOURCE_DATE_EPOCH to 1 instead of 0. 
* gnu/packages/python.scm (python-2)[arguments]: Set SOURCE_DATE_EPOCH
  to 1 to match what the daemon does.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): Likewise.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès dedc832070 gnu: python-2: Honor 'SOURCE_DATE_EPOCH'. 
* gnu/packages/patches/python-2.7-source-date-epoch.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
  [arguments]: Set SOURCE_DATE_EPOCH in 'patch-lib-shells' phase.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): New
  procedure.
  (%standard-phases): Add it.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès f8e7fdc416 gnu: tcl: Produce 'tclIndex' files deterministically. 
* gnu/packages/patches/tcl-mkindex-deterministic.patch: New patch.
* gnu/packages/tcl.scm (tcl)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-29 22:59:28 +01:00
宋文武 79c8a071e7 tk: Hardcode path to TK_LIBRARY. 
Fixes <http://bugs.gnu.org/20889>.

* gnu/packages/patches/tk-find-library.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tk)[source]: Add patch.
 2015-11-29 22:59:28 +01:00
Ricardo Wurmus 4b7857a48b gnu: Add perl-dbd-mysql. 
* gnu/packages/databases.scm (perl-dbd-mysql): New variable.
 2015-11-29 20:52:10 +01:00
Ricardo Wurmus 11d4800aa2 gnu: Add Rakarrack. 
* gnu/packages/audio.scm (rakarrack): New variable.
 2015-11-29 20:45:06 +01:00
Ricardo Wurmus 25a21c7ff6 gnu: xfce-session: Enable shutdown/reboot menu entries. 
* gnu/packages/xfce.scm (xfce-session)[inputs]: Add upower and polkit.
[source]: Replace paths to "shutdown" with "halt" and "restart".
 2015-11-29 20:33:35 +01:00
Ludovic Courtès cb7bd0cff5 gnu: weechat: Dynamically link against libpython2.7.so. 
* gnu/packages/patches/weechat-python.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/weechat.scm (weechat)[source]: Use it.
 2015-11-29 19:17:33 +01:00
Ludovic Courtès 4eae798075 gnu: guile-next: Update to 2.1.1. 
* gnu/packages/guile.scm (guile-next)[source]: Update to 2.1.1.
[arguments, native-inputs]: Move to...
(guile-for-guile-emacs): ... here.  New fields.
 2015-11-29 17:37:00 +01:00
Ludovic Courtès f79a576e77 gnu: jasper: Patch CVE-2008-3522. 
* gnu/packages/patches/jasper-CVE-2008-3522.patch: New file.
* gnu/packages/image.scm (jasper)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-28 16:29:11 +01:00
Ludovic Courtès 4331f558d7 gnu: tor: Update to 0.2.7.5. 
* gnu/packages/tor.scm (tor): Update to 0.2.7.5.
 2015-11-27 15:06:15 +01:00
Ludovic Courtès ef8742ea69 gnu: eigen: Really run tests in verbose mode. 
Suggested by Gaël Guennebaud <gael.guennebaud@inria.fr>.

* gnu/packages/algebra.scm (eigen)[arguments]: Remove #:test-target.
Rename 'build-tests' phase to 'check', and have it run 'ctest -V'.
 2015-11-27 11:04:17 +01:00
Andreas Enge 08c28b6d5a gnu: gp2c: Update to 0.0.9pl4. 
* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl4.
 2015-11-27 02:44:21 +01:00
Efraim Flashner b72a44100e gnu: python-pickleshare: Add python-setuptools to native-inputs. 
* gnu/packages/python.scm (python-pickleshare)[native-inputs]: Add
python-setuptools.
 2015-11-26 15:28:31 +02:00
Efraim Flashner 553b709ba1 gnu: python-pathpy: Add python-setuptools to native-inputs. 
* gnu/packages/python.scm (python-pathpy)[native-inputs]: Add
python-setuptools.
 2015-11-26 15:26:18 +02:00
Efraim Flashner 0066de6f3a gnu: python2-oauthlib: Override python2-cryptography in inputs. 
* gnu/packages/python.scm (python2-oauthlib)[inputs]: Override inherited
"python2-cryptography" in inputs.
 2015-11-26 12:03:45 +02:00
Efraim Flashner bde2171d4d gnu: python-oauthlib: Update to 1.0.3. 
* gnu/packages/python.scm (python-oauthlib): Update to 1.0.3.
[native-inputs]: Move python-setuptools, python-nose, python mock here.
Add python-coverage.
[inputs]: Add python-blinker, python-cryptography, python-pyjwt.
 2015-11-25 20:42:06 +02:00
Efraim Flashner 7957fe6c10 gnu: python2-unittest2: Use python2-setuptools. 
* gnu/packages/python.scm (python2-unittest2)[inputs]: Switch from
python-setuptools to python2-setuptools.
 2015-11-25 20:42:05 +02:00
David Thompson 34f5618bca gnu: Add kodi. 
* gnu/packages/kodi.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-11-25 11:44:11 -05:00
David Thompson b0b23e52a3 gnu: Add jasper. 
* gnu/packages/image.scm (jasper): New variable.
 2015-11-25 11:44:11 -05:00
David Thompson 33ae9107d8 gnu: Add tinyxml. 
* gnu/packages/xml.scm (tinyxml): New variable.
* gnu/packages/patches/tinyxml-use-stl.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-25 11:44:11 -05:00
Leo Famulari 13ef3e997b gnu: Add eyeD3. 
* gnu/packages/mp3.scm (eyed3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-11-25 17:01:02 +01:00
Ricardo Wurmus 1c207a7658 gnu: Add Ragel. 
* gnu/packages/ragel.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-11-25 15:21:47 +01:00
Ludovic Courtès b6094b1f0a gnu: dico: Sort entries in .a files deterministically. 
* gnu/packages/patches/dico-libtool-deterministic.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
[arguments]: Add #:make-flags.
* gnu-system.am (dist_patch_DATA): Add the patch.
 2015-11-25 11:59:54 +01:00
Leo Famulari 39570137e5 gnu: libreoffice: Update to 5.0.3.2 [fixes CVE-2015-5214]. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.0.3.2
 2015-11-24 22:00:34 -05:00
Ludovic Courtès c9e34a6a77 gnu: Add GNU Dico. 
* gnu/packages/dico.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-11-24 23:54:30 +01:00
Efraim Flashner eb31d4b4f1 gnu: python-pyjwt: Update to 1.4.0. 
* gnu/packages/python.scm (python-pyjwt): Update to 1.4.0.
[native-inputs]: Move python-setuptools here, add python-pytest-runner.
 2015-11-24 22:30:09 +02:00
Efraim Flashner d50d097d58 gnu: python-pytest-runner: Add python-setuptools as native-input. 
* gnu/packages/python.scm (python-pytest-runner)[native-input]: Add
  python-setuptools.
 2015-11-24 21:44:58 +02:00
Efraim Flashner 383af6b096 gnu: python-setuptools-scm: Update to 1.9.0. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 1.9.0.
[native-inputs]: Add python-setuptools.
 2015-11-24 20:08:14 +02:00
Eric Bavier 97003b5ccc gnu: gnuplot: Update to 5.0.1. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.1.
  (native-inputs): 'texlive' -> 'texlive-bin'.
 2015-11-24 11:41:46 -06:00
Ricardo Wurmus 8b749cf3cb gnu: ruby-simplecov-html: Fix hash and disable tests. 
* gnu/packages/ruby.scm (ruby-simplecov-html)[source]: Replace incorrect
  hash.
[arguments]: Disable tests.
 2015-11-24 16:39:30 +01:00
Taylan Ulrich Bayırlı/Kammer bbee7bd765 gnu: enca: Add file-name field to source. 
* gnu/packages/textutils.scm (enca): Add file-name field to source.
 2015-11-23 13:46:31 +01:00
Taylan Ulrich Bayırlı/Kammer 6f323b0773 gnu: recode: Add file-name field to source. 
* gnu/packages/textutils.scm (recode): Add file-name field to source.
 2015-11-23 12:05:55 +01:00
Ludovic Courtès 821f4dc287 gnu: Fix a few 'source-file-name' lint warnings. 
* gnu/packages/firmware.scm (ath9k-htc-firmware)[source](file-name): New
field.
* gnu/packages/gnunet.scm (guile-gnunet)[source](file-name): New field.
* gnu/packages/guile.scm (guile-next)[source](file-name): New field.
(guile-minikanren)[source](file-name): New field
(guile-gdbm-ffi)[source](file-name): New field.
* gnu/packages/ssh.scm (guile-ssh)[source](file-name): New field.
 2015-11-23 10:52:32 +01:00
Efraim Flashner 92d9a36e97 gnu: tig: Update to 2.1.1. 
* gnu/packages/version-control.scm (tig): Update to 2.1.1.
 2015-11-21 23:03:11 +02:00
Efraim Flashner 7fbbd3e7a0 gnu: cvs: Use external zlib. 
* gnu/packages/version-control.scm (cvs)[arguments]: add configure flag
  --with-exernal-zlib.
 2015-11-21 21:43:11 +02:00
Efraim Flashner f94f481988 gnu: nano: Update to 2.4.3. 
* gnu/packages/nano.scm (nano): Update to 2.4.3.
 2015-11-21 20:56:08 +02:00
Mathieu Lirzin 1b933e62dc gnu: parted: Update to 3.2. 
* gnu/packages/disk.scm (parted): Update to 3.2.
[inputs]: Add lvm2 and remove check.  Replace readline-6.2 with its
latest version.
[native-inputs]: Add perl and python for the tests.
[arguments]: Use `modify-phases' and adapt to the new tests.
[home-page]: Use https.
 2015-11-21 13:10:27 +01:00
Ludovic Courtès 06da1a6b4f gnu: Add qemu-minimal. 
* gnu/packages/qemu.scm (qemu): Exchange with former QEMU-HEADLESS.
(qemu-headless): Rename to...
(qemu-minimal): ... this.  New variable.  Pass --target-list.
* gnu/packages/debug.scm (qemu-2.3.0): Inherit from QEMU-MINIMAL.
* gnu/packages/grub.scm (qemu-for-tests): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm, qemu-image):
Update to name change.
 2015-11-21 00:36:23 +01:00
Ricardo Wurmus 56215e4154 gnu: Add Synfig Studio. 
* gnu/packages/animation.scm (synfigstudio): New variable.
 2015-11-20 20:23:03 +01:00
Ricardo Wurmus 7775a18690 gnu: Add Synfig. 
* gnu/packages/animation.scm (synfig): New variable.
* gnu/packages/patches/synfig-build-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-20 20:23:03 +01:00
Ricardo Wurmus c1fbc66a77 gnu: Add ETL. 
* gnu/packages/animation.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-11-20 20:23:03 +01:00
Ricardo Wurmus 307ad140db gnu: Add MLT. 
* gnu/packages/video.scm (mlt): New variable.
 2015-11-20 20:23:03 +01:00
Ricardo Wurmus 561965941c gnu: Add libxml++. 
* gnu/packages/gnome.scm (libxml++): New variable.
 2015-11-20 20:23:03 +01:00
Eric Bavier 9cf5245497 gnu: slepc: Update to 3.6.2. 
* gnu/packages/maths.scm (slepc): Update to 3.6.2.
  [arguments]: Append "/lib" to arpack configure flag.  Use 'inputs'
  rather than '%build-inputs' in 'configure phase.
 2015-11-20 11:58:40 -06:00
Eric Bavier 32187d99bb gnu: petsc: Update to 3.6.2. 
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
 2015-11-20 11:58:40 -06:00
Eric Bavier c69fa4380a gnu: mumps: Update to 5.0.1. 
* gnu/packages/maths.scm (mumps): Update to 5.0.1.
 2015-11-20 11:58:40 -06:00
Eric Bavier ac356fd6ab gnu: openmpi: Update to 1.10.1. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.1.
  [arguments]: Remove now-unsupported configure flags.  Add
  --enable-builtin-atomics.  Remove development-oriented
  --enable-debug.
 2015-11-20 11:58:40 -06:00
Eric Bavier 2f5b6a1f18 gnu: hwloc: Update to 1.11.1. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
  [source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-20 11:58:40 -06:00
Ricardo Wurmus 0297966495 gnu: guitarix: Update to 0.34.0. 
* gnu/packages/audio.scm (guitarix): Update to 0.34.0.
[source]: Remove patch.
[inputs]: Add webkitgtk/gtk+-2.
* gnu/packages/patches/guitarix-c++11: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-20 18:19:30 +01:00
David Thompson 3307c7877e gnu: Add emulation-station. 
* gnu/packages/games.scm (emulation-station): New variable.
 2015-11-20 09:27:15 -05:00
Ricardo Wurmus b49c5a58dc gnu: preseq: Update to 2.0. 
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
  file.
* gnu-system.am (dist_patch_DATA): Remove them.
 2015-11-20 15:22:06 +01:00
Ricardo Wurmus c6a24d6e92 gnu: Add smithlab-cpp. 
* gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
 2015-11-20 15:22:06 +01:00
Ricardo Wurmus 3d51ec919e gnu: edirect: Update home page. 
* gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing
  slash to home page.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus c52a382c4a gnu: sra-tools: Update to 2.5.4. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus 9e5ef614aa gnu: ncbi-vdb: Update to 2.5.4. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus 614a8977cb gnu: ngs-java: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
 2015-11-20 15:21:24 +01:00