* guix/import/cran.scm (%bioconductor-svn-url): Remove variable.
(bioconductor-mirror-url): New procedure.
(fetch-description): Take a REPOSITORY symbol instead of a BASE-URL string.
(cran->guix-package): Pass REPOSITORY symbol to "fetch-description".
(latest-cran-release, latest-bioconductor-release): Adjust accordingly.
(bioconductor-package?): Update comment about SVN.
* guix/build-system/asdf.scm (asdf-build): Add a #:test-asd-file argument.
[builder]: Pass it to the build system.
(package-with-build-system)[transform]: Strip it from source systems' arguments.
* guix/build/asdf-build-system.scm (check): Pass the fully qualified path to
it on to the test-system procedure.
* guix/build/lisp-utils.scm (test-system): Load the file, or otherwise one of
the often used names for it, before running the tests. Adjust the docstring
accordingly.
In support of long-running programs in which the users would like to be able
to jump to the source of a definition of any of the dependencies (itself
included) of the program.
* guix/build/asdf-build-system.scm (library-outputs): Move from here ...
* guix/build/lisp-utils.scm (library-outputs): ... to here.
(build-program): Accept dependency-prefixes argument, to allow the caller to
specify references which should be retained. Default to the library's output.
(build-image): Likewise.
(generate-executable): Likewise.
* gnu/packages/lisp.scm (sbcl-stumpwm+slynk, sbcl-slynk, sbcl-stumpwm): Adjust
accordingly to the new interface.
(sbcl-stumpwm+slynk)[native-inputs]: Move to ...
[inputs]: ... here.
Accept a list of statements, each run within its own `--eval' argument. This
allows statements to use reader package namespacing after a package has been
loaded.
* guix/build/lisp-utils.scm (spread-statements): New procedure.
(lisp-invoke): Rename to ...
(lisp-invocation): ... this. Use spread-statements. Change interface to accept
list of statements instead of a single statement.
(asdf-load-all-systems): Simplify returned statements.
(compile-system): Simplify the program passed to `lisp-eval-program'.
(test-system): Likewise.
(generate-executable-for-system): Likewise. Accept the full symbol describing
the asdf operation to use.
(generate-executable): Document the change.
(build-program, build-image): Use the new interface.
* guix/build/lisp-utils.scm (valid-char-set): New variable.
(normalize-string): New procedure.
(compiled-system): Truncate the name of a system which contains slashes.
(generate-system-definition, make-asd-file): Use `normalize-string' to alter
the names of the created system and its dependencies.
* guix/build/asdf-build-system.scm (create-asd-file): Normalize the name of
the asd file being created.
* guix/build-system/asdf.scm (asdf-build)[builder]: Pass a default
`#:asd-file' argument to the build procedure, using the system's name.
* guix/build/asdf-build-system.scm (build, check): Adjust to assume that
`asd-file' will always be a string.
* guix/build/lisp-utils.scm (compile-system, system-dependencies)
(test-system): Likewise.
* guix/build-system/asdf.scm (asdf-build): Use the user-defined system name,
or calculate it from the package's full name.
[builder]: Pass the value along to the build procedure.
(package-with-build-system): Remove #:asd-system-name from source packages'
arguments.
* guix/build/asdf-build-system.scm: Adjust accordingly.
* guix/build/lisp-utils.scm (remove-lisp-from-name): Delete variable.
* guix/build-system/asdf.scm (asdf-build)[builder]: Parameterize %lisp-type
and %lisp before invoking the build procedure. Don't pass #:lisp-type as an
argument to said procedure.
* guix/build/asdf-build-system.scm: Adjust accordingly.
(source-install-prefix): Rename to %lisp-source-install-prefix.
* guix/build/lisp-utils.scm: Adjust accordingly.
(%lisp-type): New parameter.
(bundle-install-prefix): Rename to %bundle-install-prefix.
* gnu/packages/lisp.scm: Adjust accordingly.
* guix/build-system/asdf.scm (lower): Change argument name to `lisp-type'.
(asdf-build): Change argument name to `lisp-type'. Remove `lisp' as an
argument to the returned procedure. Change the argument passed to build
phases to `lisp-type'.
* guix/build/asdf-build-system.scm (copy-source, build, check)
(create-asd-file, symlink-asd-files, cleanup-files, strip): Respect
`lisp-type` argument.
* gnu/packages/lisp.scm (sbcl-stumpwm, sbcl-stumpwm+slynk): Likewise.
* guix/build-system/asdf.scm (package-with-build-system)[transform]: Use updated
`new-inputs' procedure for inputs and native-inputs.
<rewrite>: Don't rename inputs.
<new-propagated-inputs>: Draw from package-inputs and package-native-inputs
for source packages. Use the original package's propagated-inputs otherwise.
<new-inputs>: Convert into a function to be used to transform inputs and
native-inputs.
* gnu/packages/lisp.scm (sbcl-fiveam, sbcl-bordeaux-threads)
(sbcl-flexi-streams, sbcl-cl-ppcre, sbcl-stumpwm, sbcl-slynk-arglists)
(sbcl-slynk-fancy-inspector): Don't prefix input names.
This removes the need for conventions to determine which inputs are run-time
dependencies, and also the need to specify "special" dependencies.
* guix/build/lisp-utils.scm (patch-asd-file, lisp-dependencies)
(wrap-perform-method): Remove them.
(inputs->asd-file-map, system-dependencies, generate-system-definition)
(generate-dependency-links, make-asd-file): New procedures.
(lisp-eval-program): Add an error if no lisp matches.
(compile-system): Don't use asdf's in-built asd-file generator.
* guix/build/asdf-build-system.scm (library-output): New procedure.
(copy-source, build, check, patch-asd-files, symlink-asd-files)
(cleanup-files): Use it.
(copy-files-to-output): Rework to take an output instead of an outputs and
string pair.
(install, copy-source): Use the new method.
* guix/scripts/system.scm (reinstall-grub): Rename to
reinstall-bootloader. Read boot-device and boot-type from parameters file to
be able to restore the correct bootloader on specified device.
Factorize bootloader installation code by calling install-bootloader.
(system-bootloader-name): New procedure.
(switch-to-system-generation): Adapt.
* guix/scripts/system.scm (install): Pass installer a new
argument. Rename other arguments.
Call install-bootloader instead of install-grub*.
(perform-action): Adapt.
* guix/scripts/system.scm (install-grub*): Rename to install-bootloader. Use
keys to pass arguments. Pass a new argument, "installer-drv" which is a script
in store dealing with bootloader-specific install actions. Also call
"install-boot-config" to install the bootloader config file.
(install-bootloader-derivation): New procedure. It returns a derivation that
builds a file containing "install-procedure" gexp.
(perform-action): Build install-proc derivation and call install-bootloader
with the resulting file. Stop adding GRUB to PATH as bootloaders are called in
install-proc with direct store paths.
* gnu/bootloader.scm: New file.
* gnu/bootloader/extlinux.scm: New file.
* gnu/bootloader/grub.scm: New file.
* gnu/local.mk: Build new files.
* gnu/system.scm: Adapt to new bootloader api.
* gnu/scripts/system.scm: Adapt to new bootloader api.
* gnu.scm: Remove (gnu system grub) and replace by (gnu bootloader) and (gnu
bootloader grub) modules.
* gnu/system/grub.scm: Moved content to gnu/bootloader/grub.scm.
* gnu/system/vm: Replace (gnu system grub) module by (gnu bootloader).
* gnu/tests.scm: Ditto.
* gnu/tests/nfs.scm: Ditto.
Suggested by Ricardo Wurmus.
* guix/build/bournish.scm (ls-command-implementation): When FILE is a
directory, list its contents rather than FILE itself.
* guix/import/cran.scm (package->upstream-name): Return #f if url
start and end index could not be determined.
(cran-package?): Check if the upstream-name can be extracted from
given package.
* tests/cran.scm: Add "r-minimal is not a cran package" to make sure that
r-minimal is not detected as a cran package.
This fixes a failure of guix refresh on r-minimal because no
upsteam-name can be determined from ".../R-version.tar.gz" uri.
This fixes runs of 'guix package' and 'guix system' tests in
environments where $HOME is read-only.
* guix/ui.scm (config-directory): Add #:ensure? parameter and honor it.
* guix/scripts.scm (warn-about-old-distro): Pass #:ensure? #f to
'config-directory'.
* guix/scripts/substitute.scm (cached-narinfo): When VALUE is #f, use
the TTL that is read instead of %NARINFO-NEGATIVE-TTL.
(cached-narinfo-expiration-time): Likewise.
* guix/scripts/publish.scm (not-found): Add #:phrase and #:ttl
parameters and honor them.
* tests/publish.scm ("with cache"): Check the 'cache-control' header on
of the 404 response.
Fixes <http://bugs.gnu.org/25852>.
Suggested by Mark H Weaver <mhw@netris.org>.
* guix/scripts.scm (%distro-age-warning): New variable.
(warn-about-old-distro): New procedure.
* guix/scripts/package.scm (process-actions): Call
'warn-about-old-distro'.
* guix/scripts/system.scm (process-action): Likewise.
* guix/build/java-utils.scm: New file.
* guix/build-system/ant.scm: Use it.
* Makefile.am (MODULES): Add it.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* guix/build/pull.scm (%default-optimizations)
(%lightweight-optimizations): New variables.
(optimization-options): New procedure. Taken from
build-aux/compile-all.scm.
(build-guix): Pass it to 'compile-file'.
Previously, 'guix pull' would always build with Guile 2.0.
Now it builds with the Guile that matches (effective-version).
* build-aux/build-self.scm (false-if-wrong-guile)
(package-for-current-guile): New procedures.
(guile-json, guile-ssh): Use it.
(guile-for-build): New procedure.
(build): Use (effective-version) instead of the hard-coded "/2.0".
Add (guix modules) closure to #:modules argument. Pass
\#:guile-for-build argument to 'gexp->derivation'.
* guix/build/pull.scm (depends-on-guile-ssh?, all-scheme-files): New
procedures.
(build-guix): Show the output of (version). Use the above procedures.
Filter out files that match 'depends-on-guile-ssh?' when (ssh session)
is missing.
Reported by Niall Dooley <dooleyn@gmail.com>
in <https://lists.gnu.org/archive/html/help-guix/2017-05/msg00038.html>.
* guix/scripts/pull.scm (%options): Add --dry-run and all of
%STANDARD-BUILD-OPTIONS.
(show-help): Add call to 'show-build-options-help'.
(%default-options): Add 'system', 'substitutes?', 'graft?',
'max-silent-time', and 'verbosity'.
(guix-pull)[parse-options]: Remove.
Use 'parse-command-line' instead. Honor --dry-run.
Previously, it the predicate would return #t for "m4/ChangeLog" if
"ChangeLog" (in the top-level directory) was in FILES. This commit
fixes the ambiguity.
* guix/git-download.scm (git-predicate): Add 'inodes' variable. Use it
to determine file membership.
* gnu/system/grub.scm (boot-parameters->menu-entry): New variable.
(grub-configuration-file): Use boot-parameters
instead of menu-entry where possible.
* guix/scripts/system.scm (profile-boot-parameters): Update docstring.
(reinstall-grub): Use profile-boot-parameters.
(perform-action): Use profile-boot-parameters.
* gnu/system.scm (read-boot-parameters): Remove export.
(read-boot-parameters-file): New variable. Export it.
* guix/scripts/system.scm (profile-boot-parameters): Use
read-boot-parameters-file.
(profile-grub-entries): Use read-boot-parameters-file.
(reinstall-grub): Use read-boot-parameters-file.
(display-system-generation): Use read-boot-parameters-file.
* guix/scripts/refresh.scm (maybe-updater, list-updaters): Remove.
(importer-modules): New procedure.
(%updaters): Define using 'fold-module-public-variables'. Turn into a
promise and adjust users.
* guix/monads.scm (%templates, %template-instances): New variables.
(register-template!, register-template-instance!): New procedures.
(template-directory, define-template): New macro.
(foldm, sequence, anym): Define using 'define-template'. Avoid replace
ellipses with dots.
(mapm): Likewise, but do not use 'foldm'.
* guix/store.scm: Add 'template-directory' invocation.
This allows us to download from site such as
<https://fusionforge.int-evry.fr> where the server does not recognize
the server name passed via the 'server_name' extension.
* guix/build/download.scm (tls-wrap): Catch 'gnutls-error' around
'handshake'. Upon ERROR/WARNING-ALERT-RECEIVED, print a message and
call 'handshake'.
* guix/scripts/publish.scm (narinfo-string): Add #:file-size parameter.
Produce a "FileSize" field when COMPRESSION is eq? to '%no-compression'
or when FILE-SIZE is true.
(bake-narinfo+nar): Pass #:file-size.
* tests/publish.scm ("/*.narinfo")
("/*.narinfo with properly encoded '+' sign")
("with cache"): Check for "FileSize".
* guix/scripts/refresh.scm (list-dependents)[full-name]: New procedure.
Use 'full-name' instead of 'package-full-name'.
* doc/guix.texi (Invoking guix refresh): Adjust example accordingly.
Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00457.html>.
* guix/derivations.scm (build-expression->derivation): Use a string
output port for the expression. This reverts part of
2dce88d5bb.
* tests/derivations.scm ("build-expression->derivation and builder
encoding"): New test.
This allows 'guix' commands to talk to a remote store over SSH.
* guix/store.scm (connect-to-daemon)[connect]: Call 'resolve-interface'
for unknown URI schemes.
* guix/store/ssh.scm: New file.
* Makefile.am (MODULES): Add it.
* doc/guix.texi (The Store): Document it. Mark remote access as
experimental.
On Guile 2.2.1, this yields a 5% speedup on:
guix build libreoffice xmonad certbot -n --no-substitutes --no-build-hook
* guix/derivations.scm (derivation->string): Rename to...
(derivation->bytevector): ... this. Use 'open-bytevector-output-port'
instead of 'call-with-output-string'.
(derivation-hash): Remove string-to-bytevector conversion before
'sha256' call.
(build-expression->derivation): Use 'add-data-to-store' and an
bytevector port instead of a string port for the expression.
Suggested by Quiliro <quiliro@riseup.net>
in <https://bugs.gnu.org/26567>.
* guix/scripts/publish.scm (render-home-page): New procedure.
(make-request-handler): Handle it.
* guix/scripts/publish.scm (narinfo-files): New procedure.
(render-narinfo/cached)[delete-file]: New procedure. Add call to
'maybe-remove-expired-cache-entries'.
* doc/guix.texi (Invoking guix publish): Document the interation between
--cache and --ttl.
* guix/cache.scm, tests/cache.scm: New files.
* Makefile.am (MODULES, SCM_TESTS): Add them.
* guix/scripts/substitute.scm (obsolete?): Remove.
(remove-expired-cached-narinfos): Rename to...
(cached-narinfo-expiration-time): ... this. Remove the removal part and
only keep the expiration time part.
(narinfo-cache-directories): Add optional 'directory' parameter and
honor it.
(maybe-remove-expired-cached-narinfo): Remove.
(cached-narinfo-files): New procedure.
(guix-substitute): Use 'maybe-remove-expired-cache-entries' instead of
'maybe-remove-expired-cached-narinfo'.
Fixes <http://bugs.gnu.org/26201>.
Reported by <dian_cecht@zoho.com>.
These options allow nars to be "baked" off-line and cached instead of
being compressed on the fly. As a side-effect, this allows us to
provide a 'Content-Length' header for nars.
* guix/scripts/publish.scm (show-help, %options): Add '--cache' and
'--workers'.
(%default-options): Add 'workers'.
(nar-cache-file, narinfo-cache-file, run-single-baker): New procedures.
(single-baker): New macro.
(render-narinfo/cached, bake-narinfo+nar)
(render-nar/cached): New procedures.
(make-request-handler): Add #:cache and #:pool parameters and honor
them.
(run-publish-server): Likewise.
(guix-publish): Honor '--cache' and '--workers'.
* tests/publish.scm ("with cache"): New test.
* doc/guix.texi (Invoking guix publish): Document it.
* guix/scripts/system.scm (%options, show-help): Adjust accordingly.
Keep "--no-grub" for compatibility reasons, but do not mention it in the help.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Reported by Mathieu Othacehe <m.othacehe@gmail.com>
at <http://bugs.gnu.org/26498>.
* guix/scripts/lint.scm (warn-if-package-has-input): Rename to...
(package-input-intersection): ... this. Remove 'linted' and 'message'
parameters. Return a list of inputs.
(check-inputs-should-be-native): Adjust accordingly.
(check-inputs-should-not-be-an-input-at-all): Likewise.
* guix/scripts/system.scm (profile-boot-parameters): New variable.
(reinstall-grub): Use profile-boot-parameters.
(perform-action): Use profile-boot-parameters.
Follow-up to 2e58e05bb6.
* guix/scripts/system.scm (save-load-path-excursion,
save-environment-excursion): Move definitions to the top of the file.
It allows to use them in the whole file.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Ricardo Wurmus