This patch changes the --ad-hoc flag to be positional. That is, the
packages that appear before --ad-hoc are interpreted as packages whose
inputs should be in the environment; the packages that appear after are
interpreted as packages to be directly added to the environment.
* guix/scripts/environment.scm (tag-package-arg, compact): New
procedures.
(%options): Tweak the handlers for --load and --expression options.
(options/resolve-packages): Preserve package mode tag.
(parse-args): Tweak argument handler to use package tagging procedure.
(guix-environment): Apply ad-hoc behavior on a per package basis.
* tests/guix-environment.sh: Add test.
* doc/guix.texi ("invoking guix environment"): Document new behavior of
--ad-hoc.
Fixes a regression introduced in commit 0adfe95.
* gnu/system.scm (other-file-system-services)[requirements]: Remove.
[add-dependencies]: New procedure.
Use it.
* gnu/system/file-systems.scm (<file-system>)[dependencies]: Update
comment.
* gnu/services/base.scm (mapped-device->dmd-service-name,
dependency->dmd-service-name): New procedures.
(file-system-service-type): Use it.
On PCs, it means that it will typically choose resolutions higher
than 640x480, which is nicer.
* gnu/system/grub.scm (eye-candy)[setup-gfxterm-body]: Leave 'gfxmode'
unset.
* gnu/services.scm (%modify-service, modify-services): New macros.
* gnu/services/base.scm (mingetty-service-type, guix-service-type):
Export.
* emacs/guix-devel.el (guix-devel-keywords): Add 'modify-services'.
Ditto in 'guix-devel-scheme-indent' call.
* doc/guix.texi (Using the Configuration System): Give an example of
'modify-services'.
(Service Reference): Document it.
* gnu/services/base.scm (<guix-configuration>)[substitute-urls]: New
field.
(guix-dmd-service): Honor it.
* doc/guix.texi (Base Services): Document it.
* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Update to 2.2.3.
[source]: Remove bundled Cython sources in a snippet. Replace
".tar.gz" extension in file-name field with "-checkout".
[arguments]: Replace "enter-directory-and-clean-up" phase with
"enter-directory" phase, and add "patch-setuppy" phase.
[inputs]: Add python2-h5py. Move python2-cython ...
[native-inputs]: ... to this field.
Fixes <http://bugs.gnu.org/21773>.
Reported by Jan Synáček <jan.synacek@gmail.com>.
* guix/ui.scm (make-regexp*): New procedure.
* guix/scripts/package.scm (options->installable, guix-package): Use it
when processing user-provided regexps.
* gnu/build/linux-container.scm (namespaces->bit-mask): Remove
CLONE_CHILD_CLEARTID and CLONE_CHILD_SETTID, which are unneeded.
Discussed at <http://bugs.gnu.org/21694>.
Partly fixes <http://bugs.gnu.org/20217>.
* guix/store.scm (set-build-options): Change #:substitute-urls to
default to #f. Send the 'substitute-urls' pair only if
SUBSTITUTE-URLS is true.
* guix/scripts/build.scm (set-build-options-from-command-line): Do not
default to %DEFAULT-SUBSTITUTE-URLS for #:substitute-urls.
* guix/scripts/size.scm (%default-options): Remove 'substitute-urls'.
* guix/scripts/substitute.scm (lookup-narinfos/diverse): New procedure.
(lookup-narinfo): Use it.
(process-query): Change #:cache-url to #:cache-urls.
[valid?]: Remove 'narinfo?' check, which is no longer necessary.
Use 'lookup-narinfos/diverse' instead of 'lookup-narinfos'.
(process-substitution): Change #:cache-url to #:cache-urls.
(%cache-url): Rename to...
(%cache-urls): ... this. Turn into a list.
(guix-substitute): Remove 'getaddrinfo' test with early exit. Adjust
calls to 'process-query' and 'process-substitution'.
* tests/substitute.scm: Change '%cache-url' to '%cache-urls'.
* guix/scripts/substitute.scm (lookup-narinfos): Filter out #f values
from CACHED, such that the end result is exactly a list of narinfos,
not interspersed with #f.
* guix/scripts/challenge.scm (discrepancies): Assume REMOTE is a list of
narinfos.
* gnu/packages/grub.scm (grub)[arguments]: Use modify-phases. Return #t from
'patch-stuff' phase. Add 'patch-stuff' phase after 'unpack' instead of
before 'patch-source-shebangs'.
[inputs]: Add comment noting that 'fuse' would be a desirable input.
* gnu/system/grub.scm (eye-candy): Accept additional 'system' argument. Add
local 'setup-gfxterm-body' variable. Replace the 'load_video' grub function
with 'setup_gfxterm', which includes everything in the 'if loadfont' form on
Intel systems, but is empty on non-Intel.
(grub-configuration-file): Pass 'system' to 'eye-candy.
This is a followup to commit 06d45f4566.
* emacs/guix-base.el (guix-switch-to-generation): Replace
'switch-to-generation' with 'switch-to-generation*'.
David Thompson