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40714 Commits

Author SHA1 Message Date
Marius Bakke ce1706b1bd
gnu: python-pympler: Update to 0.6. 
* gnu/packages/python-xyz.scm (python-pympler): Update to 0.6.
 2019-03-04 22:58:58 +01:00
Marius Bakke b87fc008aa
gnu: python-zope-interface: Update to 4.6.0. 
* gnu/packages/python-web.scm (python-zope-interface): Update to 4.6.0.
 2019-03-04 22:58:58 +01:00
Marius Bakke 7b43d3a7c1
gnu: python-zope-event: Update to 4.4. 
* gnu/packages/python-web.scm (python-zope-event): Update to 4.4.
 2019-03-04 22:58:57 +01:00
Marius Bakke beaff4a8a9
gnu: python-flake8: Update to 3.7.7. 
* gnu/packages/python-xyz.scm (python-flake8): Update to 3.7.7.
[propagated-inputs]: Add PYTHON-ENTRYPOINTS.
(python2-flake8)[propagated-inputs]: Add PYTHON2-TYPING.
 2019-03-04 22:58:57 +01:00
Marius Bakke 6c58a06e79
gnu: python-six: Update to 1.12.0. 
* gnu/packages/python-xyz.scm (python-six): Update to 1.12.0.
 2019-03-04 22:58:57 +01:00
Marius Bakke 1a246c01c6
gnu: python-pytest: Update to 4.3.0. 
* gnu/packages/patches/python-pytest-pluggy-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/check.scm (python-pytest): Update to 4.3.0.
[source](patches): New field.
[arguments]: Skip five new tests.  Disable tests by passing them as arguments.
 2019-03-04 22:58:57 +01:00
Marius Bakke d9ea7a734d
gnu: python-hypothesis: Update to 4.7.19. 
* gnu/packages/check.scm (python-hypothesis): Update to 4.7.19.
 2019-03-04 22:58:57 +01:00
Marius Bakke c49c71cd2c
gnu: python-pytest-runner: Update to 4.4. 
* gnu/packages/check.scm (python-pytest-runner): Update to 4.4.
 2019-03-04 22:58:57 +01:00
Marius Bakke b86b799601
gnu: python-pluggy: Update to 0.9.0. 
* gnu/packages/python-xyz.scm (python-pluggy): Update to 0.9.0.
 2019-03-04 22:58:56 +01:00
Marius Bakke d0cba11bc5
gnu: python-pyflakes: Update to 2.1.1. 
* gnu/packages/python-xyz.scm (python-pyflakes): Update to 2.1.1.
 2019-03-04 22:58:56 +01:00
Marius Bakke 08eba545f1
gnu: python-py: Update to 1.8.0. 
* gnu/packages/python-xyz.scm (python-py): Update to 1.8.0.
 2019-03-04 22:58:56 +01:00
Marius Bakke ed709ee954
gnu: Python@2: Update to 2.7.16. 
* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-2.7): Update to 2.7.16.
[source](patches): Remove obsolete.
 2019-03-04 22:58:56 +01:00
Efraim Flashner 4aeb42b9f8
gnu: bash: Update to patch level 2. 
* gnu/packages/bash.scm (%patch-series-5.0): Add patches 1 and 2.
[source]: Apply patches.
[version]: Update with patch numbers.
 2019-03-02 22:21:27 +02:00
Marius Bakke b9a30e0d37
gnu: efibootmgr: Fix build failure with GCC7. 
* gnu/packages/linux.scm (efibootmgr)[arguments]: Set C_INCLUDE_PATH.
 2019-03-01 17:41:43 +01:00
Marius Bakke 0e5f328260
gnu: OpenSSL@1.0: Update to 1.0.2r. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2r.
[replacement]: Remove.
(openssl/fixed): Remove variable.
 2019-03-01 17:41:21 +01:00
Marius Bakke f5e563e50a
Merge branch 'staging' into core-updates 2019-03-01 17:40:51 +01:00
Marius Bakke 19464173ba
Merge branch 'master' into staging 2019-03-01 17:33:00 +01:00
Marius Bakke 81bb55459a
gnu: libssh: Update to 0.8.7. 
* gnu/packages/ssh.scm (libssh): Update to 0.8.7.
 2019-03-01 17:31:20 +01:00
Marius Bakke 3e493945e8
gnu: re2: Update to 2019-03-01. 
* gnu/packages/regex.scm (re2): Update to 2019-03-01.
 2019-03-01 17:31:19 +01:00
Marius Bakke 407e1dcb72
gnu: libqmi: Update to 1.22.2. 
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.2.
 2019-03-01 17:31:19 +01:00
Marius Bakke 6c5101f8b6
gnu: libqmi: Don't use NAME in source URI. 
* gnu/packages/freedesktop.scm (libqmi)[source](uri): Hard-code NAME.
 2019-03-01 17:31:19 +01:00
Marius Bakke 3fc700d276
gnu: python-cryptography: Update to 2.6.1. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.6.1.
 2019-03-01 17:31:19 +01:00
Marius Bakke 2833756643
gnu: OpenSSL: Update to 1.1.1b. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1b.
 2019-03-01 17:31:19 +01:00
Marius Bakke 82e7a51ccd
gnu: efibootmgr: Remove obsolete configure flag. 
* gnu/packages/linux.scm (efibootmgr)[arguments]: Don't override CFLAGS.
 2019-03-01 17:31:19 +01:00
Marius Bakke 30559d8ffd
gnu: efibootmgr: Don't use NAME in source URI. 
* gnu/packages/linux.scm (efibootmgr)[source](uri): Hard-code NAME.
 2019-03-01 17:31:18 +01:00
Marius Bakke 1130929acf
gnu: attr: Update to 2.4.48. 
* gnu/packages/attr.scm (attr): Update to 2.4.48.
[source](uri): Adjust for renamed tarball.
[arguments]: Remove obsolete phases.
[license]: Remove GPL2+ (see upstream commit 0fb61a4d20).
 2019-03-01 16:31:52 +01:00
Marius Bakke e02671939b
gnu: acl: Update to 2.2.53. 
* gnu/packages/patches/acl-hurd-path-max.patch,
gnu/packages/patches/acl-fix-perl-regex.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/acl.scm (acl): Update to 2.2.53.
[source](uri): Adjust for renamed tarball.
[arguments]: Remove #:test-target.  Adjust disabled tests.  Don't override
install phase.
 2019-03-01 16:31:52 +01:00
Marius Bakke ceb831d338
gnu: libcap: Update to 2.26. 
* gnu/packages/linux.scm (libcap): Update to 2.26.
 2019-03-01 16:31:51 +01:00
Marius Bakke 85ef07c4b2
gnu: python-requests: Propagate required inputs. 
This is a follow-up to commit b5c2e72051.

* gnu/packages/python-web.scm (python-requests)[propagated-inputs]: Add
PYTHON-CERTIFI, PYTHON-CHARDET, PYTHON-IDNA, and PYTHON-URLLIB3.
(python-urllib3)[native-inputs]: Remove (due to dependency cycle).
 2019-03-01 16:29:27 +01:00
Marius Bakke 95dc93da85
gnu: python-cffi: Build HTML documentation in separate derivation. 
This is necessary to solve a dependency cycle between Sphinx and Requests.

* gnu/packages/libffi.scm (python-cffi)[outputs]: Remove.
[native-inputs]: Remove PYTHON-SPHINX.
[arguments]: Remove 'install-doc' phase.
* gnu/packages/libffi.scm (python-cffi-documentation): New public variable.
 2019-03-01 16:29:07 +01:00
Marius Bakke c62b1609ae
gnu: pciutils: Update to 3.6.2. 
* gnu/packages/pciutils.scm (pciutils): Update to 3.6.2.
 2019-03-01 14:19:54 +01:00
Marius Bakke 3c2589982d
gnu: kmod: Update to 26. 
* gnu/packages/linux.scm (kmod): Update to 26.
 2019-03-01 14:19:29 +01:00
Marius Bakke 85fe0fe368
gnu: elfutils: Update to 0.176. 
* gnu/packages/elf.scm (elfutils): Update to 0.176.
 2019-03-01 14:18:14 +01:00
Marius Bakke c4e0a99c50
gnu: gdk-pixbuf: Update to 2.38.1. 
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.38.1.
 2019-03-01 14:17:42 +01:00
Ricardo Wurmus a27ca96f10
gnu: Add velvet. 
* gnu/packages/bioinformatics.scm (velvet): New variable.
 2019-03-01 12:55:35 +01:00
Ricardo Wurmus 0ce256dc79
gnu: discrover: Remove indirect TexLive dependencies. 
* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Remove
texlive-generic-ifxetex, texlive-latex-oberdiek, texlive-latex-url, and
texlive-latex-xcolor from texlive-union.
 2019-03-01 12:55:35 +01:00
Ricardo Wurmus 0fc71e4b99
gnu: texlive-latex-pgf: Add missing input. 
* gnu/packages/tex.scm (texlive-latex-pgf)[propagated-inputs]: Add
texlive-latex-xcolor.
 2019-03-01 12:55:35 +01:00
Ricardo Wurmus 8983a52cb4
gnu: asymptote: Remove indirect TexLive dependency. 
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Remove
texlive-generic-ifxetex from texlive-union.
 2019-03-01 12:55:35 +01:00
Ricardo Wurmus 8412fa6cc7
gnu: hypre: Remove indirect TexLive dependencies. 
* gnu/packages/maths.scm (hypre)[native-inputs]: Remove
texlive-latex-oberdiek, texlive-generic-ifxetex, and texlive-latex-url from
texlive-union.
 2019-03-01 12:55:34 +01:00
Ricardo Wurmus a9cd7b0314
gnu: texlive-latex-oberdiek: Add ifxetex to inputs. 
* gnu/packages/tex.scm (texlive-latex-oberdiek)[propagated-inputs]: Add
texlive-generic-ifxetex.
 2019-03-01 12:55:34 +01:00
Ricardo Wurmus 2a0bcbf49a
gnu: texlive-latex-hyperref: Add missing inputs. 
* gnu/packages/tex.scm (texlive-latex-hyperref)[propagated-inputs]: Add
texlive-latex-oberdiek and texlive-latex-url.
 2019-03-01 12:55:34 +01:00
Ivan Petkov 7d141788b1
gnu: rust: Factor out "cargo-utils" from "cargo-build-system". 
* guix/build/cargo-utils.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/build-system/cargo.scm (%cargo-utils-modules): New variable.
(%cargo-build-system-modules): Use it.
* guix/build/cargo-build-system.scm (file-sha256, generate-checksums): Move
from here...
* guix/build/cargo-utils.scm: ...to here.
* gnu/packages/rust.scm (rust-1.19.0)[arguments]<#:imported-modules>: Use
%cargo-utils-modules.
<#:phases>[patch-cargo-checksums]: Use (guix build cargo-utils).
* gnu/packages/gnuzilla.scm (icecat):
[arguments]<#:imported-modules>: Use %cargo-utils-modules.
<#phases>[patch-cargo-checksums]: import (guix build cargo-utils).

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-01 08:20:50 +01:00
Tobias Geerinckx-Rice a215c938b3
gnu: openssl@1.1.1a: Don't inherit from openssl/fixed. 
I was a bit hasty in a92c6b1a2b.
openssl-next replaces the source, and OpenSSL 1.1.1 is invulnerable.

* gnu/packages/tls.scm (openssl-next)[inherit]: Inherit from openssl
once more.
 2019-03-01 00:12:36 +01:00
Tobias Geerinckx-Rice a92c6b1a2b
gnu: openssl: Fix CVE-2019-1559. 
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl/fixed): New variable.
(openssl-next)[inherit]: Inherit from it instead.
* gnu/packages/patches/openssl-CVE-2019-1559.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-03-01 00:00:16 +01:00
Tobias Geerinckx-Rice 8849109703
gnu: clementine: Use HTTPS home page. 
* gnu/packages/music.scm (clementine)[home-page]: Use HTTPS.
 2019-02-28 22:35:41 +01:00
Tobias Geerinckx-Rice ec0b94672b
gnu: libunwind: Update to 1.3.1. 
* gnu/packages/libunwind.scm (libunwind): Update to 1.3.1.
 2019-02-28 22:35:41 +01:00
Tobias Geerinckx-Rice 2a18b57222
gnu: netpbm: Fix CVE-2017-258[67]. 
* gnu/packages/netpbm.scm (netpbm)[source]: Add patches.
* gnu/packages/patches/netpbm-CVE-2017-2586.patch,
gnu/packages/patches/netpbm-CVE-2017-2587.patch: New files.
* gnu/local.mk: Fix missing copyright year.
(dist_patch_DATA): Add them.
 2019-02-28 22:35:41 +01:00
Tobias Geerinckx-Rice 13966cbd5e
gnu: supercollider: Update to 3.10.2. 
* gnu/packages/audio.scm (supercollider): Update to 3.10.2.
[arguments]: Remove ’apply-system-yaml-cpp-fix’ phase.
 2019-02-28 22:35:40 +01:00
Marius Bakke f90d6c3f69
gnu: efivar: Fix build failure with GCC7. 
* gnu/packages/linux.scm (efivar)[arguments]: Add phase
'kernel-headers-are-system-headers'.
 2019-02-28 20:20:28 +01:00
Marius Bakke e050aa1990
gnu: make-bootstrap: Adjust for GCC7. 
This is a follow-up to commit 01e8263feb.

* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc): Add the
GCC7 'treat-glibc-as-system-header' build phase.
 2019-02-28 19:15:02 +01:00