Commit Graph

2954 Commits

Author SHA1 Message Date
Christopher Baines 151cb9738a
git-download: Fix 'git-predicate' to use absolute paths.
git ls-files will return paths relative to the repository directory. This
commit prepends the repository directory to those paths when calling lstat,
such that 'git-predicate' works if the current working directory is not the
repository directory.

* guix/git-download.scm (git-predicate): Prepend repository directory to the
  file path when calling lstat.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-30 18:08:37 +02:00
Ricardo Wurmus d2ac5e2975
build-system/cmake: Add support for cross compilation.
Fixes <https://bugs.gnu.org/26897>.

* guix/build-system/gnu.scm: Export standard-cross-packages.
* guix/build-system/cmake.scm (cmake-cross-build): New procedure.
(lower): Add support for cross-builds.
* guix/build/cmake-build-system.scm (configure): Handle "target" argument.
2017-05-30 16:52:55 +02:00
Ludovic Courtès 27fd13c3c2
download: Work around GnuTLS bug with UTF-8 certificate file names.
Reported by Mark H Weaver <mhw@netris.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=26948#17>.

* guix/build/download.scm (set-certificate-credentials-x509-trust-file!*):
New procedure.
(make-credendials-with-ca-trust-files): Use it instead of
'set-certificate-credentials-x509-trust-file!'.
2017-05-30 13:24:55 +02:00
Ludovic Courtès 8902d0f267
scripts: Set thread names.
This allows 'guix publish' threads as well as 'guix substitute' and
'guix offload' processes to be properly labeled in 'top', 'pstree', etc.

* guix/workers.scm (worker-thunk): Add #:thread-name parameter and honor it.
(make-pool): Likewise.
* guix/scripts/publish.scm (http-write): Add calls to 'set-thread-name'
in bodies of 'call-with-new-thread'.
(guix-publish): Call 'set-thread-name'.   Pass #:thread-name to 'make-pool'.
* guix/scripts/offload.scm (guix-offload): Call 'set-thread-name'.
* guix/scripts/substitute.scm (guix-substitute): Likewise.
2017-05-28 23:13:39 +02:00
Ludovic Courtès aa401f9ba6
syscalls: Add 'thread-name' and 'set-thread-name'.
* guix/build/syscalls.scm (PR_SET_NAME, PR_GET_NAME)
(%max-thread-name-length): New variables.
(%prctl, set-thread-name, thread-name): New procedures.
* tests/syscalls.scm ("set-thread-name"): New test.
2017-05-28 23:13:39 +02:00
Arun Isaac 3d90fa982b
build-system: Add 'font-build-system'.
* Makefile.am (MODULES): Add 'guix/build-system/font.scm' and
  'guix/build/font-build-system.scm'.
* guix/build-system/font.scm: New file.
* guix/build/font-build-system.scm: New file.
* doc/guix.texi (Build Systems): Add 'font-build-system'.
2017-05-28 19:30:05 +05:30
Mark H Weaver 54d9479d8a
Merge branch 'master' into core-updates 2017-05-27 03:39:12 -04:00
Sergei Trofimovich 8b14773ab6
utils: Re-export 'delete'.
* guix/build/utils.scm: Reexport 'delete' binding.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-05-26 14:59:51 +02:00
Ricardo Wurmus 3a62dd6b22
build-system: gnu: Fix cross-gcc call.
This is a follow-up to 7b3318e34f.

* guix/build-system/gnu.scm (standard-cross-packages): Use keyword arguments
in cross-gcc call.
2017-05-25 17:02:08 +02:00
Ludovic Courtès 20ed093977
pull: Catch '&missing-dependency-error' raised by 'source-module-closure'.
Fixes <http://bugs.gnu.org/26987>.
Reported by Mathieu Othacehe <m.othacehe@gmail.com>.

* guix/build/pull.scm (depends-on-guile-ssh?): Remove.
(has-all-its-dependencies?): New procedure.
(build-guix): Use it to filter source files.
2017-05-25 14:25:17 +02:00
Ludovic Courtès bfe5264aa1
modules: Raise an error when a dependency could not be found.
* guix/modules.scm (&missing-dependency-error): New error condition.
(source-module-dependencies): Raise it when 'search-path' returns #f.
* tests/modules.scm ("&missing-dependency-error"): New test.
2017-05-25 14:25:17 +02:00
Ludovic Courtès 4862a98be4
base64: Turn into a regular Guile module.
* guix/base64.scm: Replace 'library' form with 'define-module'.
2017-05-25 14:25:17 +02:00
Leo Famulari 38f1163c95
Merge branch 'master' into core-updates 2017-05-24 18:02:27 -04:00
Ricardo Wurmus d1a914082b
Merge branch 'master' into core-updates 2017-05-24 12:05:47 +02:00
Ludovic Courtès 737397355c
publish: Do not bake the same item several times.
Before this patch, there was a possibility that we'd queue several
baking tasks for the same item.  The first one would bake the item but
subsequent tasks wouldn't check whether the item had been baked in the
meantime and would re-bake it.

* guix/scripts/publish.scm (render-narinfo/cached): Don't call
'bake-narinfo+nar' when (file-exists? cached).
2017-05-24 11:17:42 +02:00
Ludovic Courtès 807ba51950
guix package: Swallow EPIPE upon 'guix package --list-generations'.
Fixes <http://bugs.gnu.org/27017>.
Reported by Alex Vong <alexvong1995@gmail.com>.

* guix/scripts/package.scm (process-query) <'list-generations>: Wrap
body in 'leave-on-EPIPE'.
2017-05-23 23:57:28 +02:00
Efraim Flashner 59d0f067ff
packages: Add aarch64-linux to %supported-systems.
* guix/packages.scm (%supported-systems): Add aarch64-linux.
(%hydra-supported-systems): Remove aarch64-linux.
2017-05-23 21:51:36 +03:00
Arun Isaac d879685176
build-system: emacs: Install only a subset of files.
* guix/build/emacs-build-system.scm (install): Install files matching
  #:include while excluding files matching #:exclude.
* guix/build-system/emacs.scm (emacs-build): Add keyword arguments #:include
  and #:exclude.
2017-05-23 06:12:43 +05:30
Arun Isaac d0a26f3a68
build: emacs: Fix `store-file->elisp-source-file'.
This prevents a ".el.el" extension for source files with no version number in
their file name.

* guix/build/emacs-build-system.scm (store-file->elisp-source-file): Remove
  ".el" extension from file name before splitting to name and version.
2017-05-23 04:35:06 +05:30
Arun Isaac 5ae59eb6d9
guix: lint: Slightly simplify `check-source-file-name'.
* guix/scripts/lint.scm (check-source-file-name): Implement file name matching
  with regular expression.
2017-05-23 04:35:06 +05:30
Arun Isaac ad25e9962e
gnu: lint: Fix typo.
* guix/scripts/lint.scm (check-source-file-name): Fix wrong return value in
  docstring.
2017-05-23 04:35:06 +05:30
Marius Bakke fd3782d13b
Merge branch 'version-0.13.0' 2017-05-22 18:25:01 +02:00
Ludovic Courtès 8a29dc07a4
guix system: Don't warn about old distros for "guix system init".
* guix/scripts/system.scm (process-action): Don't call
'warn-about-old-distro' when ACTION is 'init' or 'build'.
2017-05-21 11:49:07 +02:00
Ludovic Courtès 092c58e745
guix system: Increase image size for 'guix system vm'.
This is a followup to 9a1bfe7648.

* guix/scripts/system.scm (system-derivation-for-action): Add 40MiB to
the default size for 'vm'.
2017-05-21 01:25:16 +02:00
Leo Famulari 40fd5600a2
download: Prune the ImageMagick mirror list.
These sites' TLS certificates are invalid.

* guix/download.scm (%mirrors) <imagemagick>: Remove
mirrors-{au,ru,uk}.go-parts.com.
2017-05-20 14:06:20 -04:00
Ludovic Courtès 96afb480f8
pack: Use 'guile2.0-json' when building with Guile 2.0.
Fixes <http://bugs.gnu.org/27005>.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

Fixes a regression introduced in commit
2252f087d4.

* guix/scripts/pack.scm (docker-image)[json]: New variable.
[build]: Use it.
2017-05-20 14:39:50 +02:00
Ludovic Courtès d6bf931cb2
pack: Use 'guile2.0-json' when building with Guile 2.0.
Fixes <http://bugs.gnu.org/27005>.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

Fixes a regression introduced in commit
2252f087d4.

* guix/scripts/pack.scm (docker-image)[json]: New variable.
[build]: Use it.
2017-05-20 14:30:01 +02:00
Ludovic Courtès 4ee6584cbf
modules: Add more source-less modules.
* guix/modules.scm (%source-less-modules): New variable.
(source-module-dependencies): Use it.
2017-05-20 10:17:43 +02:00
Ludovic Courtès 4a628d57fc
publish: Fix narinfo rendering for already-compressed items.
Fixes <http://bugs.gnu.org/26975>.
Reported by Mark H Weaver <mhw@netris.org>.

* guix/scripts/publish.scm (bake-narinfo+nar): Pass #f as the 2nd
argument to 'stat' and properly handle #f.
* tests/publish.scm (wait-for-file): New procedure.
("with cache"): Remove 'wait-for-file' procedure.
("with cache, uncompressed"): New test.
2017-05-20 10:17:36 +02:00
Ludovic Courtès 36c99429a3
union: Gracefully handle dangling symlinks in the input.
Fixes <http://bugs.gnu.org/26949>.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* guix/build/union.scm (file-is-directory?): Return #f when FILE does
not exist or is a dangling symlink.
(file=?): Pass #f as a second argument to 'stat'; return #f when both
ST1 or ST2 is #f.
* tests/profiles.scm (test-equalm): New macro.
("union vs. dangling symlink"): New test.
2017-05-20 10:17:14 +02:00
Maxim Cournoyer 6d1ae43dcb
profiles: Add elapsed time to manual-database hook to output message.
* guix/profiles.scm (manual-database): Add elapsed time to manual-database
hook to output message.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-20 10:15:47 +02:00
Ludovic Courtès 7afc2aabdf
modules: Add more source-less modules.
* guix/modules.scm (%source-less-modules): New variable.
(source-module-dependencies): Use it.
2017-05-19 10:45:12 +02:00
Ludovic Courtès ffa5e0a6d2
publish: Fix narinfo rendering for already-compressed items.
Fixes <http://bugs.gnu.org/26975>.
Reported by Mark H Weaver <mhw@netris.org>.

* guix/scripts/publish.scm (bake-narinfo+nar): Pass #f as the 2nd
argument to 'stat' and properly handle #f.
* tests/publish.scm (wait-for-file): New procedure.
("with cache"): Remove 'wait-for-file' procedure.
("with cache, uncompressed"): New test.
2017-05-18 21:35:35 +02:00
Ludovic Courtès 27c81fcb86
lint: inputs-should-be-native: Add "cmake".
Suggested by Nicolas Goaziou <mail@nicolasgoaziou.fr>.

* guix/scripts/lint.scm (check-inputs-should-be-native)[input-names]:
Add "cmake".
2017-05-18 14:22:03 +02:00
Ludovic Courtès 22ef06b801
union: Gracefully handle dangling symlinks in the input.
Fixes <http://bugs.gnu.org/26949>.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* guix/build/union.scm (file-is-directory?): Return #f when FILE does
not exist or is a dangling symlink.
(file=?): Pass #f as a second argument to 'stat'; return #f when both
ST1 or ST2 is #f.
* tests/profiles.scm (test-equalm): New macro.
("union vs. dangling symlink"): New test.
2017-05-18 11:38:48 +02:00
Maxim Cournoyer 516bfed7a3
profiles: Add elapsed time to manual-database hook to output message.
* guix/profiles.scm (manual-database): Add elapsed time to manual-database
hook to output message.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-16 23:10:10 +02:00
Ricardo Wurmus 17a69cf623
import cran: Check if pkg-config is needed.
* guix/import/cran.scm (needs-pkg-config?): New procedure.
(description->package): Use it.
2017-05-16 21:43:35 +02:00
Ricardo Wurmus a0f43208cb
import cran: Refactor "needs-zlib?".
* guix/import/cran.scm (tarball-files-match-pattern?): New procedure.
(needs-zlib?): Implement in terms of "tarball-files-match-pattern?".
2017-05-16 21:43:15 +02:00
Ricardo Wurmus ff8c179ab6
import cran: Export package predicates.
* guix/import/cran.scm (cran-package?, bioconductor-package?,
bioconductor-data-package?, bioconductor-experiment-package?): Export
procedures.
2017-05-16 21:42:18 +02:00
Ricardo Wurmus daaa270ecc
import cran: Add predicate for Bioconductor experiment packages.
* guix/import/cran.scm (bioconductor-experiment-package?): New variable.
2017-05-16 21:40:39 +02:00
Ricardo Wurmus c9ffa91fd3
import cran: Exclude experiment packages in predicate "bioconductor-package?".
* guix/import/cran.scm (bioconductor-package?): Exclude experiment packages,
because they cannot be updated with the default bioconductor updater.
2017-05-16 21:40:03 +02:00
Ricardo Wurmus 7c9fcb0825
import cran: Fetch DESCRIPTION files from Github mirror.
* guix/import/cran.scm (%bioconductor-svn-url): Remove variable.
(bioconductor-mirror-url): New procedure.
(fetch-description): Take a REPOSITORY symbol instead of a BASE-URL string.
(cran->guix-package): Pass REPOSITORY symbol to "fetch-description".
(latest-cran-release, latest-bioconductor-release): Adjust accordingly.
(bioconductor-package?): Update comment about SVN.
2017-05-16 21:39:06 +02:00
Andy Patterson 0383afa02a
build-system/asdf: Handle tests defined in external systems.
* guix/build-system/asdf.scm (asdf-build): Add a #:test-asd-file argument.
[builder]: Pass it to the build system.
(package-with-build-system)[transform]: Strip it from source systems' arguments.
* guix/build/asdf-build-system.scm (check): Pass the fully qualified path to
it on to the test-system procedure.
* guix/build/lisp-utils.scm (test-system): Load the file, or otherwise one of
the often used names for it, before running the tests.  Adjust the docstring
accordingly.
2017-05-16 15:18:16 +02:00
Andy Patterson 4209c31b8f
build-system/asdf: Retain references to source files for binary outputs.
In support of long-running programs in which the users would like to be able
to jump to the source of a definition of any of the dependencies (itself
included) of the program.

* guix/build/asdf-build-system.scm (library-outputs): Move from here ...
* guix/build/lisp-utils.scm (library-outputs): ... to here.
(build-program): Accept dependency-prefixes argument, to allow the caller to
specify references which should be retained.  Default to the library's output.
(build-image): Likewise.
(generate-executable): Likewise.
* gnu/packages/lisp.scm (sbcl-stumpwm+slynk, sbcl-slynk, sbcl-stumpwm): Adjust
accordingly to the new interface.
(sbcl-stumpwm+slynk)[native-inputs]: Move to ...
[inputs]: ... here.
2017-05-16 15:18:16 +02:00
Andy Patterson b9afcb9ed4
build-system/asdf: Simplify the use of lisp-eval-program.
Accept a list of statements, each run within its own `--eval' argument. This
allows statements to use reader package namespacing after a package has been
loaded.

* guix/build/lisp-utils.scm (spread-statements): New procedure.
(lisp-invoke): Rename to ...
(lisp-invocation): ... this. Use spread-statements. Change interface to accept
list of statements instead of a single statement.
(asdf-load-all-systems): Simplify returned statements.
(compile-system): Simplify the program passed to `lisp-eval-program'.
(test-system): Likewise.
(generate-executable-for-system): Likewise. Accept the full symbol describing
the asdf operation to use.
(generate-executable): Document the change.
(build-program, build-image): Use the new interface.
2017-05-16 15:18:15 +02:00
Andy Patterson 40f56176c5
build-system/asdf: Handle unusually-named systems.
* guix/build/lisp-utils.scm (valid-char-set): New variable.
(normalize-string): New procedure.
(compiled-system): Truncate the name of a system which contains slashes.
(generate-system-definition, make-asd-file): Use `normalize-string' to alter
the names of the created system and its dependencies.
* guix/build/asdf-build-system.scm (create-asd-file): Normalize the name of
the asd file being created.
2017-05-16 15:18:15 +02:00
Andy Patterson 0186a463d0
build-system/asdf: Always pre-load the system's definition file.
* guix/build-system/asdf.scm (asdf-build)[builder]: Pass a default
`#:asd-file' argument to the build procedure, using the system's name.
* guix/build/asdf-build-system.scm (build, check): Adjust to assume that
`asd-file' will always be a string.
* guix/build/lisp-utils.scm (compile-system, system-dependencies)
(test-system): Likewise.
2017-05-16 15:18:15 +02:00
Andy Patterson 457702b1d9
build-system/asdf: Pass the system name as an argument to the builder.
* guix/build-system/asdf.scm (asdf-build): Use the user-defined system name,
or calculate it from the package's full name.
[builder]: Pass the value along to the build procedure.
(package-with-build-system): Remove #:asd-system-name from source packages'
arguments.
* guix/build/asdf-build-system.scm: Adjust accordingly.
* guix/build/lisp-utils.scm (remove-lisp-from-name): Delete variable.
2017-05-16 15:18:15 +02:00
Andy Patterson b4c9f0c50d
build-system/asdf: Parameterize the lisp type and implementation globally.
* guix/build-system/asdf.scm (asdf-build)[builder]: Parameterize %lisp-type
and %lisp before invoking the build procedure. Don't pass #:lisp-type as an
argument to said procedure.
* guix/build/asdf-build-system.scm: Adjust accordingly.
(source-install-prefix): Rename to %lisp-source-install-prefix.
* guix/build/lisp-utils.scm: Adjust accordingly.
(%lisp-type): New parameter.
(bundle-install-prefix): Rename to %bundle-install-prefix.
* gnu/packages/lisp.scm: Adjust accordingly.
2017-05-16 15:18:15 +02:00
Andy Patterson 6de91ba2a1
build-system/asdf: Make #:lisp a package argument.
* guix/build-system/asdf.scm (lower): Change argument name to `lisp-type'.
(asdf-build): Change argument name to `lisp-type'.  Remove `lisp' as an
argument to the returned procedure.  Change the argument passed to build
phases to `lisp-type'.
* guix/build/asdf-build-system.scm (copy-source, build, check)
(create-asd-file, symlink-asd-files, cleanup-files, strip): Respect
`lisp-type` argument.
* gnu/packages/lisp.scm (sbcl-stumpwm, sbcl-stumpwm+slynk): Likewise.
2017-05-16 15:18:15 +02:00
Andy Patterson 26a16d37ff
build-system/asdf: Keep ecl's generated archive files.
This may be necessary to produce programs or images with ecl.

* guix/build/asdf-build-system.scm (cleanup-files): Don't delete .a files.
2017-05-16 15:18:14 +02:00
Andy Patterson 0e1371be09
build-system/asdf: Don't rename inputs.
* guix/build-system/asdf.scm (package-with-build-system)[transform]: Use updated
`new-inputs' procedure for inputs and native-inputs.
<rewrite>: Don't rename inputs.
<new-propagated-inputs>: Draw from package-inputs and package-native-inputs
for source packages.  Use the original package's propagated-inputs otherwise.
<new-inputs>: Convert into a function to be used to transform inputs and
native-inputs.
* gnu/packages/lisp.scm (sbcl-fiveam, sbcl-bordeaux-threads)
(sbcl-flexi-streams, sbcl-cl-ppcre, sbcl-stumpwm, sbcl-slynk-arglists)
(sbcl-slynk-fancy-inspector): Don't prefix input names.
2017-05-16 15:18:14 +02:00
Andy Patterson 35189728cd
build-system/asdf: Use asdf to determine dependencies.
This removes the need for conventions to determine which inputs are run-time
dependencies, and also the need to specify "special" dependencies.

* guix/build/lisp-utils.scm (patch-asd-file, lisp-dependencies)
(wrap-perform-method): Remove them.
(inputs->asd-file-map, system-dependencies, generate-system-definition)
(generate-dependency-links, make-asd-file): New procedures.
(lisp-eval-program): Add an error if no lisp matches.
(compile-system): Don't use asdf's in-built asd-file generator.
2017-05-16 15:18:14 +02:00
Andy Patterson 6c76ce39ac
build-system/asdf: Make it possible to use "lib" as the build output.
* guix/build/asdf-build-system.scm (library-output): New procedure.
(copy-source, build, check, patch-asd-files, symlink-asd-files)
(cleanup-files): Use it.
(copy-files-to-output): Rework to take an output instead of an outputs and
string pair.
(install, copy-source): Use the new method.
2017-05-16 15:18:14 +02:00
Andy Patterson bc389c20a9
build-system/asdf: Rename %install-prefix to %source-install-prefix.
* guix/build/lisp-utils.scm (%install-prefix): Rename to
%source-install-prefix.
(build-install-prefix): Use it.
* guix/build/asdf-build-system.scm (source-install-prefix)
(%system-install-prefix, source-directory, copy-source): Likewise.
2017-05-16 15:18:14 +02:00
Mathieu Othacehe 5641dffb07
scripts: system: Display bootloader name in "list-generations".
* guix/scripts/system.scm (display-system-generation): Display
  bootloader name.
2017-05-16 14:41:02 +02:00
Mathieu Othacehe 3241f7ff92
scripts: system: Adapt "switch-generation" to new bootloader API.
* guix/scripts/system.scm (reinstall-grub): Rename to
  reinstall-bootloader. Read boot-device and boot-type from parameters file to
  be able to restore the correct bootloader on specified device.
  Factorize bootloader installation code by calling install-bootloader.
 (system-bootloader-name): New procedure.
 (switch-to-system-generation): Adapt.
2017-05-16 14:41:02 +02:00
Mathieu Othacehe 1229d328fb
scripts: system: Adapt "init" to new bootloader API.
* guix/scripts/system.scm (install): Pass installer a new
argument. Rename other arguments.
Call install-bootloader instead of install-grub*.
(perform-action): Adapt.
2017-05-16 14:41:02 +02:00
Mathieu Othacehe 3042c5d8bb
scripts: system: Adapt "reconfigure" to new bootloader API.
* guix/scripts/system.scm (install-grub*): Rename to install-bootloader.  Use
keys to pass arguments.  Pass a new argument, "installer-drv" which is a script
in store dealing with bootloader-specific install actions.  Also call
"install-boot-config" to install the bootloader config file.

(install-bootloader-derivation): New procedure.  It returns a derivation that
builds a file containing "install-procedure" gexp.

(perform-action): Build install-proc derivation and call install-bootloader
with the resulting file.  Stop adding GRUB to PATH as bootloaders are called in
install-proc with direct store paths.
2017-05-16 14:41:01 +02:00
Mathieu Othacehe b09a8da4a2
bootloader: Add extlinux support.
* gnu/bootloader.scm: New file.
* gnu/bootloader/extlinux.scm: New file.
* gnu/bootloader/grub.scm: New file.
* gnu/local.mk: Build new files.
* gnu/system.scm: Adapt to new bootloader api.
* gnu/scripts/system.scm: Adapt to new bootloader api.
* gnu.scm: Remove (gnu system grub) and replace by (gnu bootloader) and (gnu
bootloader grub) modules.
* gnu/system/grub.scm: Moved content to gnu/bootloader/grub.scm.
* gnu/system/vm: Replace (gnu system grub) module by (gnu bootloader).
* gnu/tests.scm: Ditto.
* gnu/tests/nfs.scm: Ditto.
2017-05-16 14:41:01 +02:00
Ludovic Courtès ce92d269fe
ui: Disable Guile deprecation warnings by default.
* guix/ui.scm (initialize-guix): Call (debug-disable 'warn-deprecated)
when "GUILE_WARN_DEPRECATED" is not set.
2017-05-16 14:31:37 +02:00
Ludovic Courtès f411124321
utils: 'compressed-file?' matches ".lzma" files.
* guix/utils.scm (compressed-file?): Add "lzma" to the list.
2017-05-15 23:55:10 +02:00
Ricardo Wurmus 095494ed6c
licenses: Add EDL 1.0.
* guix/licenses.scm (edl1.0): New variable.
2017-05-15 22:33:17 +02:00
Ludovic Courtès 1812205cf5
bournish: 'ls' adjusts the column width depending on the entries.
* guix/build/bournish.scm (display-tabulated): Remove #:columns and
  #:column-width parameters.  Add #:terminal-width and #:column-gap.
  Compute COLUMN-WIDTH and COLUMNS.
2017-05-13 16:52:11 +02:00
Ludovic Courtès c7d1b061f5
bournish: 'ls' lists directory contents.
Suggested by Ricardo Wurmus.

* guix/build/bournish.scm (ls-command-implementation): When FILE is a
directory, list its contents rather than FILE itself.
2017-05-13 16:52:11 +02:00
Mathieu Othacehe 22fc581db3
import: pypi: Robustify latest-release.
* guix/import/pypi.scm (latest-release): Check if pypi-fetch has
  failed. If so return #f, else construct the <upstream-source>.
2017-05-13 12:40:20 +02:00
Mathieu Othacehe db427602d8
import: cran: Robustify cran-package?.
* guix/import/cran.scm (package->upstream-name): Return #f if url
  start and end index could not be determined.
  (cran-package?): Check if the upstream-name can be extracted from
  given package.
* tests/cran.scm: Add "r-minimal is not a cran package" to make sure that
  r-minimal is not detected as a cran package.

This fixes a failure of guix refresh on r-minimal because no
upsteam-name can be determined from ".../R-version.tar.gz" uri.
2017-05-13 12:40:20 +02:00
Ludovic Courtès e06ca952ed
scripts: Do not create the config directory.
This fixes runs of 'guix package' and 'guix system' tests in
environments where $HOME is read-only.

* guix/ui.scm (config-directory): Add #:ensure? parameter and honor it.
* guix/scripts.scm (warn-about-old-distro): Pass #:ensure? #f to
'config-directory'.
2017-05-13 00:03:46 +02:00
Ludovic Courtès 5db5dff53d
substitute: Honor 'Cache-Control' on 404 responses.
* guix/scripts/substitute.scm (cached-narinfo): When VALUE is #f, use
the TTL that is read instead of %NARINFO-NEGATIVE-TTL.
(cached-narinfo-expiration-time): Likewise.
2017-05-11 18:05:42 +02:00
Ludovic Courtès 24b21720f7
publish: Advertise a short TTL for "baking" 404s.
* guix/scripts/publish.scm (not-found): Add #:phrase and #:ttl
parameters and honor them.
* tests/publish.scm ("with cache"): Check the 'cache-control' header on
of the 404 response.
2017-05-11 18:05:42 +02:00
Roel Janssen 5899fafbfe
graph: Add Cypher backend.
* guix/graph.scm (%cypher-backend): New variable.
* doc/guix.texi: Add documentation for the Cypher backend of 'guix graph'.
2017-05-11 16:17:49 +02:00
Ludovic Courtès bc0e6c9312
scripts: Fix singular/plural message mismatch.
* guix/scripts.scm (warn-about-old-distro): Swap singular and plural
forms in 'N_' call.
2017-05-10 23:38:04 +02:00
Ben Woodcroft c6cfec42b0
build-system: Add package-with-ocaml4.01.
* guix/build-system/ocaml.scm (default-ocaml4.01, default-ocaml4.01-findlib,
package-with-explicit-ocaml, package-with-ocaml4.01,
strip-ocaml4.01-variant): New variables.
2017-05-10 22:13:54 +02:00
Ludovic Courtès 7fd952e052
scripts: Warn about old distro.
Fixes <http://bugs.gnu.org/25852>.
Suggested by Mark H Weaver <mhw@netris.org>.

* guix/scripts.scm (%distro-age-warning): New variable.
(warn-about-old-distro): New procedure.
* guix/scripts/package.scm (process-actions): Call
'warn-about-old-distro'.
* guix/scripts/system.scm (process-action): Likewise.
2017-05-10 22:09:08 +02:00
Ludovic Courtès 30d2397f73
ui: 'string->duration' correctly handles hours.
* guix/ui.scm (string->duration): Add missing '=>' for hours.
* tests/ui.scm ("duration, 2 hours"): New test.
2017-05-10 22:05:21 +02:00
Hartmut Goebel 59135f0d7e
guix: Add java-utils.
* guix/build/java-utils.scm: New file.
* guix/build-system/ant.scm: Use it.
* Makefile.am (MODULES): Add it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-05-10 17:59:22 +02:00
Ricardo Wurmus 52a791f50f
ant-build-system: Add default "check" target.
* guix/build-system/ant.scm (ant-build): Change default test target to
"check"; add "test-dir" argument.
* guix/build/ant-build-system.scm (default-build.xml): Add "test-dir"
argument; add ant targets "compile-tests" and "check".
(configure): Add "test-dir" argument; pass it to "default-build.xml".
2017-05-10 17:59:22 +02:00
Hartmut Goebel 8df64f7384
ant-build-system: Allow specifying source directory.
* guix/build-system/ant.scm (ant-build),
guix/build/ant-build-system.scm (default-build.xml): Add parameter
source-dir.
* guix/build/ant-build-system.scm (configure): Pass source-dir on to
default-build.xml.
* doc/guix.texi (Build Systems): Document it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-05-10 17:59:22 +02:00
Ludovic Courtès 07a0f68fa5
pull: Build package modules without optimizations on Guile 2.2.
* guix/build/pull.scm (%default-optimizations)
(%lightweight-optimizations): New variables.
(optimization-options): New procedure.  Taken from
build-aux/compile-all.scm.
(build-guix): Pass it to 'compile-file'.
2017-05-09 18:08:24 +02:00
Ludovic Courtès 838ba73d6e
pull: Build with the matching Guile major version.
Previously, 'guix pull' would always build with Guile 2.0.
Now it builds with the Guile that matches (effective-version).

* build-aux/build-self.scm (false-if-wrong-guile)
(package-for-current-guile): New procedures.
(guile-json, guile-ssh): Use it.
(guile-for-build): New procedure.
(build): Use (effective-version) instead of the hard-coded "/2.0".
Add (guix modules) closure to #:modules argument.  Pass
\#:guile-for-build argument to 'gexp->derivation'.
* guix/build/pull.scm (depends-on-guile-ssh?, all-scheme-files): New
procedures.
(build-guix): Show the output of (version).  Use the above procedures.
Filter out files that match 'depends-on-guile-ssh?' when (ssh session)
is missing.
2017-05-09 18:08:24 +02:00
Ludovic Courtès 402e98c524
pull: Use 'with-store'.
* guix/scripts/pull.scm (guix-pull): Remove call to 'open-connection'.
Use 'with-store' instead.
2017-05-09 18:08:24 +02:00
Ludovic Courtès 4902d3c4e0
pull: Honor the standard build options.
Reported by Niall Dooley <dooleyn@gmail.com>
in <https://lists.gnu.org/archive/html/help-guix/2017-05/msg00038.html>.

* guix/scripts/pull.scm (%options): Add --dry-run and all of
%STANDARD-BUILD-OPTIONS.
(show-help): Add call to 'show-build-options-help'.
(%default-options): Add 'system', 'substitutes?', 'graft?',
'max-silent-time', and 'verbosity'.
(guix-pull)[parse-options]: Remove.
Use 'parse-command-line' instead.  Honor --dry-run.
2017-05-09 18:08:24 +02:00
Ludovic Courtès ba2260dbbc
git-download: Fix 'git-predicate' file membership.
Previously, it the predicate would return #t for "m4/ChangeLog" if
"ChangeLog" (in the top-level directory) was in FILES.  This commit
fixes the ambiguity.

* guix/git-download.scm (git-predicate): Add 'inodes' variable.  Use it
to determine file membership.
2017-05-07 18:08:11 +02:00
Ludovic Courtès 950d51c9d9
store: Use 'TCP_NODELAY' when connecting to a daemon over PF_INET.
* guix/store.scm (open-inet-socket): Add 'cond-expand' form to define
'TCP_NODELAY' when needed.  Add call to 'setsockopt' after 'connect'.
2017-05-07 00:18:36 +02:00
Leo Famulari 40d728a87d
Revert "guix: git: Add new module."
This reverts commit a70b784708.

Commit a70b784708 caused `guix pull` to fail:

ERROR: In procedure scm-error:
ERROR: no code for module (git)
2017-05-05 20:12:57 -04:00
Mathieu Othacehe a70b784708
guix: git: Add new module.
* guix/git.scm: New file.
* configure.ac: Check for (guile git).
* Makefile.am: Build guix/git.scm if (guile git) is available.
2017-05-05 19:52:38 +02:00
Danny Milosavljevic 7e3f7acbe0
scripts: Remove profile-grub-entries.
* guix/scripts/system.scm (profile-grub-entries): Delete variable.
2017-05-05 15:03:48 +02:00
Danny Milosavljevic bf8b09169c
system: grub: Use boot-parameters instead of menu-entry where possible.
* gnu/system/grub.scm (boot-parameters->menu-entry): New variable.
(grub-configuration-file): Use boot-parameters
instead of menu-entry where possible.
* guix/scripts/system.scm (profile-boot-parameters): Update docstring.
(reinstall-grub): Use profile-boot-parameters.
(perform-action): Use profile-boot-parameters.
2017-05-05 15:03:48 +02:00
Danny Milosavljevic 0315abe608
scripts: Make boot-parameters label include generation number and time.
* guix/scripts/system.scm (system->boot-parameters): Make label include
generation number and time.
2017-05-05 15:03:47 +02:00
Danny Milosavljevic 9530e73b49
system: Introduce read-boot-parameters-file.
* gnu/system.scm (read-boot-parameters): Remove export.
(read-boot-parameters-file): New variable. Export it.
* guix/scripts/system.scm (profile-boot-parameters): Use
read-boot-parameters-file.
(profile-grub-entries): Use read-boot-parameters-file.
(reinstall-grub): Use read-boot-parameters-file.
(display-system-generation): Use read-boot-parameters-file.
2017-05-05 15:03:47 +02:00
Ludovic Courtès 396d12faea
store: Use 'write-bytevector' instead of hand-coded equivalent.
* guix/store.scm (process-stderr): Use 'write-bytevector' in the
%STDERR-READ case.
2017-05-04 18:05:05 +02:00
Ludovic Courtès cd041b268e
store: Add store path computation procedures.
* guix/derivations.scm (compressed-hash, store-path)
(output-path, fixed-output-path): Move to...
* guix/store.scm: ... here.
2017-05-04 18:05:05 +02:00
Tobias Geerinckx-Rice 74067fedce
environment: Correct typo.
* guix/scripts/environment.scm (create-environment): Fix typo.
2017-05-04 12:52:23 +02:00
Ludovic Courtès 634088a565
refresh: Use (guix discovery).
* guix/scripts/refresh.scm (maybe-updater, list-updaters): Remove.
(importer-modules): New procedure.
(%updaters): Define using 'fold-module-public-variables'.  Turn into a
promise and adjust users.
2017-05-03 23:50:15 +02:00
Ludovic Courtès cd903ef787
Add (guix discovery).
* guix/discovery.scm, tests/discovery.scm: New files.
* gnu/packages.scm (scheme-files, file-name->module-name)
(scheme-modules, all-package-modules): Remove.
(fold-packages): Rewrite in terms of 'fold-module-public-variables'.
* gnu/tests.scm: Use (guix discovery).
* Makefile.am (MODULES): Add guix/discovery.scm.
(SCM_TESTS): Add tests/discovery.scm.
2017-05-03 23:50:15 +02:00
Ludovic Courtès 69daee23af
ui: Rename '_' to 'G_'.
This avoids collisions with '_' when the latter is used as a 'match'
pattern for instance.  See
<https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00464.html>.

* guix/ui.scm: Rename '_' to 'G_'.
* po/guix/Makevars (XGETTEXT_OPTIONS): Adjust accordingly.
* build-aux/compile-all.scm (warnings): Remove 'format'.
* gnu/packages.scm,
gnu/services.scm,
gnu/services/shepherd.scm,
gnu/system.scm,
gnu/system/shadow.scm,
guix/gnupg.scm,
guix/http-client.scm,
guix/import/cpan.scm,
guix/import/elpa.scm,
guix/import/pypi.scm,
guix/nar.scm,
guix/scripts.scm,
guix/scripts/archive.scm,
guix/scripts/authenticate.scm,
guix/scripts/build.scm,
guix/scripts/challenge.scm,
guix/scripts/container.scm,
guix/scripts/container/exec.scm,
guix/scripts/copy.scm,
guix/scripts/download.scm,
guix/scripts/edit.scm,
guix/scripts/environment.scm,
guix/scripts/gc.scm,
guix/scripts/graph.scm,
guix/scripts/hash.scm,
guix/scripts/import.scm,
guix/scripts/import/cpan.scm,
guix/scripts/import/cran.scm,
guix/scripts/import/crate.scm,
guix/scripts/import/elpa.scm,
guix/scripts/import/gem.scm,
guix/scripts/import/gnu.scm,
guix/scripts/import/hackage.scm,
guix/scripts/import/nix.scm,
guix/scripts/import/pypi.scm,
guix/scripts/import/stackage.scm,
guix/scripts/lint.scm,
guix/scripts/offload.scm,
guix/scripts/pack.scm,
guix/scripts/package.scm,
guix/scripts/perform-download.scm,
guix/scripts/publish.scm,
guix/scripts/pull.scm,
guix/scripts/refresh.scm,
guix/scripts/size.scm,
guix/scripts/substitute.scm,
guix/scripts/system.scm,
guix/ssh.scm,
guix/upstream.scm: Use 'G_' instead of '_'.  Most of this change was
obtained by running: "sed -i -e's/(_ "/(G_ "/g' `find -name \*.scm`".
2017-05-03 16:16:17 +02:00
Petter 2f3108ad03
gnu: Avoid circular dependencies by Perl license.
* guix/licenses.scm (perl-license): New variable.
* gnu/packages/bioinformatics.scm: Change (package-license perl) to perl-license.
* gnu/packages/compression.scm: Same.
* gnu/packages/databases.scm: Same.
* gnu/packages/gd.scm: Same.
* gnu/packages/language.scm: Same.
* gnu/packages/libevent.scm: Same.
* gnu/packages/mail.scm: Same.
* gnu/packages/messaging.scm: Same.
* gnu/packages/ncurses.scm: Same.
* gnu/packages/networking.scm: Same.
* gnu/packages/photo.scm: Same.
* gnu/packages/tcl.scm: Same.
* gnu/packages/tex.scm: Same.
* gnu/packages/tls.scm: Same.
* gnu/packages/web.scm: Same.
* gnu/packages/wm.scm: Same.
* gnu/packages/xml.scm: Same.
* gnu/packages/xorg.scm: Same.
* gnu/packages/zip.scm: Same.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-02 23:41:14 +02:00
Ludovic Courtès dcb95c1fc9
monads: Add a template and specialization mechanism for monadic procedures.
* guix/monads.scm (%templates, %template-instances): New variables.
(register-template!, register-template-instance!): New procedures.
(template-directory, define-template): New macro.
(foldm, sequence, anym): Define using 'define-template'.  Avoid replace
ellipses with dots.
(mapm): Likewise, but do not use 'foldm'.
* guix/store.scm: Add 'template-directory' invocation.
2017-05-02 23:41:13 +02:00
Ludovic Courtès 7b9ac883ea
download: Continue handshake upon TLS warning alerts.
This allows us to download from site such as
<https://fusionforge.int-evry.fr> where the server does not recognize
the server name passed via the 'server_name' extension.

* guix/build/download.scm (tls-wrap): Catch 'gnutls-error' around
'handshake'.  Upon ERROR/WARNING-ALERT-RECEIVED, print a message and
call 'handshake'.
2017-05-02 23:41:13 +02:00
Ludovic Courtès 756be979cb
licenses: Add CeCILL and CeCILL-B.
* guix/licenses.scm (cecill, cecill-b): New variables.
2017-05-02 23:41:13 +02:00
Ludovic Courtès 8a2105078b
substitute: Validate substitute URLs.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00548.html>.

* guix/scripts/substitute.scm (validate-uri): New procedure.
(guix-substitute): Use it.
2017-05-02 12:32:52 +02:00
Ludovic Courtès e723178a10
publish: Use a larger zlib buffer for compression with '--cache'.
* guix/scripts/publish.scm (bake-narinfo+nar): Pass #:buffer-size to
'call-with-gzip-output-port'.
2017-05-02 12:32:51 +02:00
Mark H Weaver bedba06426
Add package/inherit.
* guix/packages.scm (package/inherit): New public macro.
2017-05-02 04:19:09 -04:00
Clément Lassieur 3314396138
licenses: Add new meta-license fsdg-compatible.
* guix/licenses.scm (fsdg-compatible): New record with constructor.
2017-05-01 21:32:15 +02:00
Ludovic Courtès dff3189c7d
publish: Produce a "FileSize" narinfo field when possible.
* guix/scripts/publish.scm (narinfo-string): Add #:file-size parameter.
Produce a "FileSize" field when COMPRESSION is eq? to '%no-compression'
or when FILE-SIZE is true.
(bake-narinfo+nar): Pass #:file-size.
* tests/publish.scm ("/*.narinfo")
("/*.narinfo with properly encoded '+' sign")
("with cache"): Check for "FileSize".
2017-05-01 17:28:20 +02:00
Ludovic Courtès 6d1a5e5ffd
refresh: Report packages using the "@" syntax.
* guix/scripts/refresh.scm (list-dependents)[full-name]: New procedure.
Use 'full-name' instead of 'package-full-name'.
* doc/guix.texi (Invoking guix refresh): Adjust example accordingly.
2017-05-01 16:38:30 +02:00
Roel Janssen 7c3e4660a5
import: Update Bioconductor release to 3.5.
* guix/import/cran.scm: Change Bioconductor release to 3.5.
2017-04-28 11:02:26 +02:00
Ludovic Courtès 25a49294ca
cache: Work around 'time-monotonic' bug in Guile 2.2.2.
* guix/cache.scm (time-monotonic) [guile-2.2]: New variable.
* tests/cache.scm (time-monotonic) [guile-2.2]: Likewise.
* guix/build/download.scm (time-monotonic) [guile-2.2]: Adjust comment:
it's a 2.2.2 bug.
2017-04-22 14:42:15 +02:00
Ludovic Courtès 1fe958d62a
download: Work around Guile 2.2 bug with 'time-monotonic' objects.
* guix/build/download.scm (time-monotonic) [guile-2.2]: New variable.
2017-04-22 01:25:22 +02:00
Ludovic Courtès 9231ef12f2
derivations: Restore UTF-8 encoding of build scripts.
Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00457.html>.

* guix/derivations.scm (build-expression->derivation): Use a string
output port for the expression.  This reverts part of
2dce88d5bb.
* tests/derivations.scm ("build-expression->derivation and builder
encoding"): New test.
2017-04-21 22:45:29 +02:00
Ludovic Courtès 285f63e805
store: Support 'ssh://' URIs in 'GUIX_DAEMON_SOCKET'.
This allows 'guix' commands to talk to a remote store over SSH.

* guix/store.scm (connect-to-daemon)[connect]: Call 'resolve-interface'
for unknown URI schemes.
* guix/store/ssh.scm: New file.
* Makefile.am (MODULES): Add it.
* doc/guix.texi (The Store): Document it.  Mark remote access as
experimental.
2017-04-21 19:17:36 +02:00
Ludovic Courtès e537833726
ssh: Decompose 'connect-to-remote-daemon'.
* guix/ssh.scm (remote-daemon-channel): New procedure.
(connect-to-remote-daemon): Implement in terms of it.
2017-04-21 19:17:36 +02:00
Ludovic Courtès 615c5298f7
ssh: Move 'open-ssh-session' to (guix ssh).
* guix/scripts/copy.scm (%compression, open-ssh-session): Move to...
* guix/ssh.scm: ... here.  Use '&message' conditions instead of calling
'leave'.
2017-04-21 19:17:34 +02:00
Ludovic Courtès ba97e454bf
offload: Avoid using '_' as a 'match' pattern.
* guix/scripts/offload.scm (host-key->type+key, machine-load)
(process-request, guix-offload): Do not use '_' as a 'match' pattern.
2017-04-21 17:23:37 +02:00
Ludovic Courtès 3dff90ce34
store: Add support for remote connections via 'guix://' URIs.
* guix/store.scm (open-inet-socket): New procedure.
(connect-to-daemon): Support the 'guix' URI scheme.
* doc/guix.texi (The Store): Document it.
2017-04-21 17:23:37 +02:00
Ludovic Courtès 3b5cd17a97
store: Add 'system-error-to-connection-error' macro.
* guix/store.scm (system-error-to-connection-error): New macro.
(open-unix-domain-socket): Use it instead of 'catch'.
2017-04-21 17:23:37 +02:00
Ludovic Courtès 1397b422e2
store: 'GUIX_DAEMON_SOCKET' can now be a URI.
* guix/store.scm (%daemon-socket-file): Rename to...
(%daemon-socket-uri): ... this.
(connect-to-daemon): New procedure.
(open-connection): Rename 'file' to 'uri'.  Use 'connect-to-daemon'
instead of 'open-unix-domain-socket'.
* guix/tests.scm (open-connection-for-tests): Rename 'file' to 'uri'.
* tests/guix-build.sh: Add tests.
* tests/store.scm ("open-connection with file:// URI"): New tests.
2017-04-21 17:23:37 +02:00
Ludovic Courtès 2dce88d5bb
derivations: Avoid string-to-bytevector conversions.
On Guile 2.2.1, this yields a 5% speedup on:

  guix build libreoffice xmonad certbot -n --no-substitutes --no-build-hook

* guix/derivations.scm (derivation->string): Rename to...
(derivation->bytevector): ... this.  Use 'open-bytevector-output-port'
instead of 'call-with-output-string'.
(derivation-hash): Remove string-to-bytevector conversion before
'sha256' call.
(build-expression->derivation): Use 'add-data-to-store' and an
bytevector port instead of a string port for the expression.
2017-04-20 23:35:55 +02:00
Ludovic Courtès e1bbc0e38d
publish: Add a handler for / and /index.html.
Suggested by Quiliro <quiliro@riseup.net>
in <https://bugs.gnu.org/26567>.

* guix/scripts/publish.scm (render-home-page): New procedure.
(make-request-handler): Handle it.
2017-04-19 23:43:51 +02:00
Ludovic Courtès 2363bdd707
gexp: 'gexp-modules' accepts plain Scheme objects.
* guix/gexp.scm (gexp-modules): Return '() when not (gexp? GEXP).
* tests/gexp.scm ("gexp-modules and literal Scheme object"): New test.
2017-04-19 17:51:39 +02:00
Ludovic Courtès d72b42064b
publish: Remove expired cache entries when '--ttl' is used.
* guix/scripts/publish.scm (narinfo-files): New procedure.
(render-narinfo/cached)[delete-file]: New procedure.  Add call to
'maybe-remove-expired-cache-entries'.
* doc/guix.texi (Invoking guix publish): Document the interation between
--cache and --ttl.
2017-04-18 23:19:30 +02:00
Ludovic Courtès 2ea2aac6e9
Add (guix cache) and use it in (guix scripts substitute).
* guix/cache.scm, tests/cache.scm: New files.
* Makefile.am (MODULES, SCM_TESTS): Add them.
* guix/scripts/substitute.scm (obsolete?): Remove.
(remove-expired-cached-narinfos): Rename to...
(cached-narinfo-expiration-time): ... this.  Remove the removal part and
only keep the expiration time part.
(narinfo-cache-directories): Add optional 'directory' parameter and
honor it.
(maybe-remove-expired-cached-narinfo): Remove.
(cached-narinfo-files): New procedure.
(guix-substitute): Use 'maybe-remove-expired-cache-entries' instead of
'maybe-remove-expired-cached-narinfo'.
2017-04-18 23:19:30 +02:00
Ludovic Courtès 00753f7038
publish: Add '--cache' and '--workers'.
Fixes <http://bugs.gnu.org/26201>.
Reported by <dian_cecht@zoho.com>.

These options allow nars to be "baked" off-line and cached instead of
being compressed on the fly.  As a side-effect, this allows us to
provide a 'Content-Length' header for nars.

* guix/scripts/publish.scm (show-help, %options): Add '--cache' and
'--workers'.
(%default-options): Add 'workers'.
(nar-cache-file, narinfo-cache-file, run-single-baker): New procedures.
(single-baker): New macro.
(render-narinfo/cached, bake-narinfo+nar)
(render-nar/cached): New procedures.
(make-request-handler): Add #:cache and #:pool parameters and honor
them.
(run-publish-server): Likewise.
(guix-publish): Honor '--cache' and '--workers'.
* tests/publish.scm ("with cache"): New test.
* doc/guix.texi (Invoking guix publish): Document it.
2017-04-18 23:18:41 +02:00
Ludovic Courtès 339a79fd6a
publish: Use 'sendfile' when possible.
* guix/scripts/publish.scm (http-write): In the
'application/octet-stream' case, use 'sendfile' when OUTPUT is a file
port.
2017-04-18 23:17:18 +02:00
Ludovic Courtès 905ae5276d
publish: Introduce 'actual-compression'.
* guix/scripts/publish.scm (actual-compression): New procedure.
(narinfo-string): Use it.
2017-04-18 23:17:18 +02:00
Ludovic Courtès 1563d6c79f
Add (guix workers).
* guix/workers.scm, tests/workers.scm: New files.
* Makefile.am (MODULES, SCM_TESTS): Add them.
* .dir-locals.el: Add rule for 'eventually'.
2017-04-18 23:17:17 +02:00
Ludovic Courtès e16c823f80
serialization: Remove Guile < 2.0.9 workaround.
* guix/serialization.scm (write-contents): Assume 'sendfile' is always
defined.
2017-04-17 23:31:28 +02:00
Ludovic Courtès 94df39cc08
records: Slight simplification.
* guix/records.scm (make-syntactic-constructor): Simplify 'find' expression.
2017-04-17 23:31:28 +02:00
Marius Bakke 7c7b802cce
download: Add netfilter mirror.
* guix/download.scm (%mirrors): Add mirrors for www.netfilter.org.
2017-04-17 23:05:46 +02:00
Mathieu Othacehe a9eadc06ac
scripts: system: Rename --no-grub option to --no-bootloader.
* guix/scripts/system.scm (%options, show-help): Adjust accordingly.
Keep "--no-grub" for compatibility reasons, but do not mention it in the help.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-04-17 17:41:54 +02:00
Ludovic Courtès 1730c5b509
lint: Avoid non-literal format strings.
Reported by Mathieu Othacehe <m.othacehe@gmail.com>
at <http://bugs.gnu.org/26498>.

* guix/scripts/lint.scm (warn-if-package-has-input): Rename to...
(package-input-intersection): ... this.  Remove 'linted' and 'message'
parameters.  Return a list of inputs.
(check-inputs-should-be-native): Adjust accordingly.
(check-inputs-should-not-be-an-input-at-all): Likewise.
2017-04-16 12:08:30 +02:00
Ludovic Courtès f816dba680
ui: Gracefully report '&message' conditions.
* guix/ui.scm (report-load-error, warn-about-load-error)
(read/eval): Add special-case for SRFI-35 &message conditions.
2017-04-16 00:48:07 +02:00
Ludovic Courtès efe7d19a9e
services: 'service-parameters' becomes 'service-value'.
* gnu/services.scm (<service>)[parameters]: Rename to...
[value]: ... this.
Change calls to 'service-parameters' to 'service-value'.
* gnu/system.scm, gnu/tests/base.scm,
guix/scripts/system.scm, tests/services.scm: Likewise.
* doc/guix.texi (Service Reference): Adjust accordingly.
2017-04-16 00:48:07 +02:00
Leo Famulari c8a3dea847
packages: Enable threaded compression of source tarballs.
This provides a ~2x speedup when using 4 threads.

* guix/packages.scm (patch-and-repack)[build]: Invoke xz with
'--threads=0' when re-packing tarballs.
2017-04-15 18:34:59 -04:00
Danny Milosavljevic 958a1fda9e
system: Make grub use <menu-entry> instead of <boot-parameters> again.
* gnu/system/grub.scm: Remove boot-parameters->menu-entry.
(grub-configuration): Don't use boot-parameters->menu-entry.
* gnu/system.scm (operating-system-bootcfg): Use menu-entry.
* guix/scripts/system.scm (reinstall-grub): Use profile-grub-entries.
(perform-action): Use profile-grub-entries.
2017-04-15 22:02:38 +02:00
Danny Milosavljevic abae042ea4
scripts: system: Introduce profile-boot-parameters.
* guix/scripts/system.scm (profile-boot-parameters): New variable.
(reinstall-grub): Use profile-boot-parameters.
(perform-action): Use profile-boot-parameters.

Follow-up to 2e58e05bb6.
2017-04-15 19:34:00 +02:00
Mathieu Othacehe e61519ab9c
scripts: system: Rename grub? and install-grub? to bootloader? and install-bootloader?.
* guix/scripts/system.scm (perform-action): Rename grub? to bootloader,
(%options): rename install-grub? to install-bootloader?,
(%default-options): ditto,
(process-action): reindent and rename grub? to bootloader?.
2017-04-15 15:22:47 +02:00
Mathieu Othacehe c76b3046f6
system: Rename operating-system-grub.cfg to operating-system-bootcfg.
* gnu/system.scm (operating-system-grub.cfg): Rename to...
(operating-system-bootcfg): ... this.
* gnu/system/vm.scm (system-disk-image): Use operating-system-bootcfg.
(system-qemu-image): Use operating-system-bootcfg.
(system-qemu-image/shared-store): Use operating-system-bootcfg.
* guix/scripts/system.scm (perform-action): Use operating-system-bootcfg.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-04-15 14:41:10 +02:00
Danny Milosavljevic 03daeaa70f
scripts: system: Back out operating-system-bootcfg change.
Follow-up to 475e2ce211.

* guix/scripts/system.scm (perform-action): Back out operating-system-bootcfg
change.
2017-04-15 14:41:10 +02:00
Danny Milosavljevic 475e2ce211
scripts: system: Move save-load-path-excursion and save-environment-excursion macros to the top.
* guix/scripts/system.scm (save-load-path-excursion,
save-environment-excursion): Move definitions to the top of the file.
It allows to use them in the whole file.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-04-15 13:28:25 +02:00
Mathieu Othacehe a41134b442
scripts: system: Move save-load-path-excursion and save-environment-excursion macros to the top.
* guix/scripts/system.scm (save-load-path-excursion,
save-environment-excursion): Move definitions to the top of the file.
It allows to use them in the whole file.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-04-15 12:33:56 +02:00
Mathieu Othacehe e60ee79040
build-system/cargo: Remove store reference.
* guix/build/cargo-build-system.scm (generate-checksums): Remove store
  reference from comment. This comment was matching
  assert-no-store-file-names regexp in Makefile.am.
  Also, edit procedure docstring to precise that DIR-NAME is a store
  directory.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-14 12:29:20 +02:00
Mathieu Othacehe 23e525e109
syscalls: Add load-linux-module.
* guix/build/syscalls.scm (load-linux-module): New procedure. Reimplemented
from guile-linux-syscalls.patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-11 11:13:26 +02:00
Mathieu Othacehe c5cd4fad09
syscalls: Use define-as-needed for network-interface syscalls.
* guix/build/syscalls.scm (network-interface-flags): Use define-as-needed macro
and remove from export list.
(set-network-interface-flags): Ditto.
(set-network-interface-address): Ditto.
(IFF_UP, IFF_BROADCAST and IFF_LOOPBACK): Ditto.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-11 11:13:25 +02:00
Mathieu Othacehe 7df4d3465d
syscalls: Use define-as-needed for mount and umount.
* guix/build/syscalls.scm (mount): Use define-as-needed macro
and remove from export list.
(umount): Ditto.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-11 11:13:25 +02:00
Mathieu Othacehe 8336df0668
syscalls: Add reboot.
* guix/build/syscalls.scm (define-as-needed): New macro.
(reboot): New procedure. Reimplemented from guile-linux-syscalls.patch.
(RB_AUTOBOOT, ..., RB_KEXEC): New flags copied from static Guile patch.

Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-11 11:13:25 +02:00
Chris Marusich 8bc2183fe5
monads: Improve mlet, mlet*, and mbegin documentation.
* doc/guix.texi (The Store Monad) <mlet, mlet*, mbegin>: Clarify
their intended usage.
* guix/monads.scm (mbegin): Update docstring accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-08 14:40:51 +02:00
Chris Marusich 60a9fcb137
monads, doc: Improve mwhen and munless documentation.
* doc/guix.texi (The Store Monad) <mwhen, munless>: Document them.
* guix/monads.scm (mwhen, munless): Clarify their intended use.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-08 14:40:51 +02:00
Chris Marusich d922c8e4b7
monads: Use intent-revealing parameter names.
* guix/monads.scm (mwhen, munless): Rename parameters from 'exp0' and 'exp' to
  'mexp0' and 'mexp', respectively.  This makes it more obvious that these
  expressions must be monadic expressions.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-08 14:40:50 +02:00
Mathieu Othacehe f91fcd9c42
syscalls: Allow mount and umount use from static Guile.
* guix/build/syscalls.scm (mount): Use Guile core mount if called from
  static Guile, otherwise use FFI based mount implementation.
  (umount): Ditto.
  This allows to use (guix build syscalls) from a module independently
  of calling context.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-07 23:30:39 +02:00
Ludovic Courtès 5537f2d279
profiles: Slightly improve the instructions in 'etc/profile'.
* guix/build/profiles.scm (build-etc/profile): Fix typo in comment.
Add backslash in the generated shell comment.
2017-04-07 23:30:38 +02:00
Ludovic Courtès 83cfa0247b
pack: Add '--expression'.
* guix/scripts/pack.scm (%options, show-help): Add '--expression'.
(guix-pack)[maybe-package-argument]: New procedure.
Use it, and remove variable 'specs'.
* doc/guix.texi (Invoking guix pack): Document '--expression'.
2017-04-07 23:30:38 +02:00
Ludovic Courtès 9a3762a768
size: Avoid '_' as a pattern variable in 'match'.
* guix/scripts/size.scm (display-profile, profile->page-map): Don't use
'_' as a 'match' pattern variable.
2017-04-07 00:17:16 +02:00
Chris Marusich 5ea69d9a56
system: Support the --root option in 'guix system'.
Fixes <https://bugs.gnu.org/26271>.

* guix/scripts/system.scm (perform-action): Add #:gc-root parameter and
honor it.
(show-help): Document the --root option.
(%options): Add 'root'.
(process-action): Pass 'root' option to perform-action as #:gc-root.
* doc/guix.texi (Invoking guix system): Document '--root'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-06 10:24:32 +02:00
Chris Marusich a09b45da6f
build: Add and export procedure 'register-root*'.
* guix/scripts/build.scm (register-root*): Add and export it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-06 10:11:26 +02:00
Ludovic Courtès 50f4ea18c4
environment: Deal with single-entry search paths.
This is a followup to fcd75bdbfa.

* guix/scripts/environment.scm (create-environment): Check whether
SEPARATOR is #f.
2017-04-05 22:50:21 +02:00
Maxim Cournoyer a0b87ef8ec
profiles: Generate database file for man pages.
The mandb database file (index.db) is used by the "apropos" (whatis) or
"man -k" commands.  This change introduces a profile hook to generate
such database file.

* guix/profiles.scm (manual-database): New procedure.
(%default-profile-hooks): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-04-05 22:45:41 +02:00
Ludovic Courtès 1618006d0b
build-system/python: 'package-with-explicit-python' uses 'package-mapping'.
* guix/build-system/python.scm (package-with-explicit-python)
[package-variant, cut?]: New procedures.
[transform]: Remove 'mlambdaq' form and input tuple handling.
Use 'package-mapping'.
2017-04-05 22:45:41 +02:00
Ludovic Courtès f37f2b83fa
packages: Add 'package-mapping' and base 'package-input-rewriting' on it.
* guix/packages.scm (package-mapping): New procedure.
(package-input-rewriting): Rewrite in terms of 'package-mapping'.
* tests/packages.scm ("package-mapping"): New test.
* doc/guix.texi (Defining Packages): Document it.
2017-04-05 22:45:41 +02:00
Ricardo Wurmus 5ae63362ae
import cran: Distinguish Bioconductor data packages.
* guix/import/cran.scm (bioconductor-package?): Exclude Bioconductor
data packages.
(bioconductor-data-package?): New procedure.
2017-04-05 18:38:51 +02:00
Leo Famulari b23c1a71be
download: Update the GnuPG mirror list.
* guix/download.scm (%mirrors) <gnupg>: Use HTTP for TU Wien mirror.
2017-04-05 07:07:35 -04:00
Chris Marusich 1c6b2d3f98
build: Export register-root procedure.
* guix/scripts/build.scm: Export register-root procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-05 00:53:03 +02:00
Leo Famulari 6c17422eac
utils: Fix handling of shell arguments for xz compression.
Fixes test failures related to xz compression in tests/utils.scm.

This is a followup to commit 63102406f2.

* guix/utils.scm (decompressed-port, compressed-port, compressed-output-port):
Split each shell argument into its own list element.
2017-04-03 23:23:39 -04:00
Ludovic Courtès 76c486196f
packages: Catch invalid input errors for structs.
Reported by Thomas Sigurdsen <thomas.sigurdsen@gmail.com>
at <https://lists.gnu.org/archive/html/help-guix/2017-04/msg00007.html>.

* guix/packages.scm (expand-input): Add 'guard' form around call to
'package-source-derivation'.
* tests/packages.scm (dummy): New test.
2017-04-04 00:10:00 +02:00
Ludovic Courtès 3e43166ffc
gexp: 'lower-object' raises an exception when passed an invalid object.
* guix/gexp.scm (&gexp-error, &gexp-input-error): New error conditions.
(lower-object): Raise &gexp-input-error when 'lookup-compiler' returns #f.
* tests/gexp.scm ("lower-object & gexp-input-error?"): New test.
* guix/ui.scm (call-with-error-handling): Add case for 'gexp-input-error?'.
2017-04-04 00:10:00 +02:00
Ludovic Courtès 2a0d5de5a9
Merge branch 'core-updates' 2017-04-03 00:13:06 +02:00
Efraim Flashner 63102406f2
guix: Compress and decompress xz archives in parallel.
* guix/scripts/pack.scm (%compressors): Add flag '-T0' when calling "xz".
* guix/utils.scm (decompressed-port, compressed-port,
compressed-output-port): Same.
2017-04-02 14:42:20 +03:00
Tobias Geerinckx-Rice f264e838c0
substitute: Send ‘User-Agent’ header.
* guix/scripts/substitute.scm (narinfo-request): Pass ‘User-Agent’ #:headers
to ‘build-request’.
2017-03-31 15:33:16 +02:00
Marius Bakke 84157bb8bf
Merge branch 'master' into core-updates
Most conflicts are from 6fd52309b8.
2017-03-30 22:59:53 +02:00
Ludovic Courtès cdb3f734cf
packages: Remove "mips64el-linux" from '%hydra-supported-systems'.
* guix/packages.scm (%hydra-supported-systems): Remove "mips64el-linux".
2017-03-29 22:50:42 +02:00
Ludovic Courtès e1f02f92e9
Replace (compose not PROC) with simpler idioms.
* gnu/packages/bioinformatics.scm (python-pysam)[arguments] <check>:
Use (negate proc) instead of (compose not proc).
* guix/import/cran.scm (recursive-import): Likewise.
* guix/import/elpa.scm (filter-dependencies): Use 'remove' instead of
'(filter (compose not proc) ...)'.
2017-03-28 22:15:44 +02:00
Ricardo Wurmus 1a75083b0d
import cran: Print package stream in the expected order.
* guix/scripts/import/cran.scm (guix-import-cran): Reverse list of packages.
2017-03-28 15:54:10 +02:00
Ricardo Wurmus 2dca8b2d51
import cran: Automatically add gfortran and zlib when needed.
* guix/import/cran.scm (needs-fortran?, needs-zlib?): New procedures.
(description->package): Use them.
2017-03-28 15:37:47 +02:00
Ludovic Courtès 6dfd683dc7
download: Properly parse ftp:// URLs that lack user info.
Fixes a regression introduced in
a4f5423415.

Reported by Hartmut Goebel.

* guix/build/download.scm (ftp-fetch): Account for the case where
'uri-userinfo' returns #f.  Remove the case where it returns "" since
that cannot happen.
2017-03-28 13:30:09 +02:00
Ludovic Courtès bdb59b331b
derivations: Do not fetch narinfos for non-substitutable items.
This avoids connections to substitute servers for derivations that are
not substitutable anyway, such as profiles.

Reported by Andy Wingo.

* guix/derivations.scm (substitution-oracle): Skip derivations that do
not pass 'substitutable-derivation?'.
* tests/derivations.scm ("substitution-oracle and #:substitute? #f"):
New test.
2017-03-28 10:00:05 +02:00
Leo Famulari c17383f400
Merge branch 'master' into core-updates 2017-03-27 21:19:38 -04:00
Alex Kost 689db38e34
ui: Support Texinfo markup in package synopses.
* guix/ui.scm (package-field-string): New procedure.
(package-description-string): Use it.
(package-synopsis-string): New procedure.
(package->recutils): Use it.
* guix/scripts/lint.scm (check-synopsis-style)[check-texinfo-markup]:
New procedure.  Use it in checks.
* tests/lint.scm: Test it.
* gnu/packages/perl.scm (perl-try-tiny)[synopsis]: Adjust for the
Texinfo markup.
2017-03-27 10:55:16 +03:00
Huang Ying 0a5ce0d1df
profiles: Create fonts.dir/scale for all fonts directories.
* guix/profiles.scm (fonts-dir-file): Create fonts.dir/scale files for all
fonts directories.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-26 12:53:52 +02:00
Huang Ying addce19e2d
union: Add create-all-directories? parameter to 'union-build'.
* guix/build/union.scm (union-build): Add create-all-directories? keyword
parameter.
* tests/union.scm ("union-build #:create-all-directories? #t"): New test.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-26 12:53:48 +02:00
Efraim Flashner 0371b345e8
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-23 14:53:33 +02:00
Ludovic Courtès 4bb5e0aeb3
publish: Add '--nar-path'.
* guix/scripts/publish.scm (show-help, %options): Add '--nar-path'.
(%default-options): Add 'nar-path'.
(guix-publish): Honor it.
2017-03-22 14:05:59 +01:00
Ludovic Courtès cdd7a7d210
publish: Make the nar URL prefix a parameter.
* guix/scripts/publish.scm (narinfo-string): Add #:nar-path and honor it.
(render-narinfo): Likewise.
(make-request-handler): Likewise.
(run-publish-server): Likewise.
* tests/publish.scm ("custom nar path"): New test.
2017-03-22 14:05:59 +01:00
Ludovic Courtès 46f58390cb
publish: Add '--public-key' and '--private-key'.
* guix/scripts/publish.scm (show-help, %options): Add --public-key and
--private-key.
* doc/guix.texi (Invoking guix publish): Document it.
2017-03-22 14:05:59 +01:00
Ludovic Courtès ab2a74e4db
publish: The public and private keys are now SRFI-39 parameters.
* guix/scripts/publish.scm (%default-options): Add 'public-key-file' and
'private-key-file'.
(lazy-read-file-sexp): Remove.
(%private-key, %public-key): Turn into SRFI-39 parameters.
(signed-string, render-narinfo): Adjust accordingly.
(guix-publish): Honor 'public-key-file' and 'private-key-file' from
OPTS.  Use 'parameterize'.
* guix/pk-crypto.scm (read-file-sexp): New procedure.
* tests/publish.scm: Initialize '%public-key' and '%private-key'.
2017-03-22 14:05:59 +01:00
Efraim Flashner 378de69c59
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-22 12:57:37 +02:00
Roel Janssen a4f5423415
download: Handle username and password properties for FTP URIs.
* guix/build/download.scm (ftp-fetch): Process username and password from a URI.
2017-03-21 12:15:14 +01:00
Roel Janssen 193420a803
ftp-client: Allow custom username and password for FTP servers.
* guix/ftp-client.scm (ftp-open): Add username and password arguments.
2017-03-21 12:14:05 +01:00
Mark H Weaver d67f972bd7
download: Remove non-existent kernel mirror.
* guix/download.scm (%mirrors) <kernel.org>: Remove www.all.kernel.org.
2017-03-19 21:18:46 -04:00
Mark H Weaver f67337e23e
Merge branch 'master' into core-updates 2017-03-19 18:52:12 -04:00
Ludovic Courtès 4fd06a4dd1
http-client: Avoid name clash with 'open-connection-for-uri' in 2.2.0.
* guix/build/download.scm (open-connection-for-uri): Add note about
same-named binding in Guile 2.2.0.
* guix/http-client.scm: Use 'guix:open-connection-for-uri' for the
procedure coming from (guix build download).
* guix/scripts/lint.scm: Likewise.
* guix/scripts/substitute.scm: Likewise.
2017-03-18 00:39:50 +01:00
Ludovic Courtès 36626c556e
build: Require Guile >= 2.0.9.
* configure.ac: Bump requirement to 2.0.9.
* doc/guix.texi (Requirements): Adjust accordingly.
* README (Requirements): Likewise.
* build-aux/download.scm: Remove workaround for <http://bugs.gnu.org/13095>.
* guix/build/download.scm: Likewise.
(http-fetch)[post-2.0.7?]: Remove.  Remove conditional code for not
POST-2.0.7?.
* guix/http-client.scm:  Remove workaround for <http://bugs.gnu.org/13095>.
(http-fetch)[post-2.0.7?]: Remove.  Remove conditional code for not
POST-2.0.7?.
* guix/serialization.scm (read-latin1-string): Remove mention of 2.0.9.
* tests/nar.scm: Use (ice-9 control).
(let/ec): Remove.
2017-03-18 00:39:49 +01:00
Ludovic Courtès 5461115e8f
pack: Add '--target'.
* guix/scripts/pack.scm (self-contained-tarball): Add #:target.
(docker-image): Add #:target.
[build]: Pass it to 'build-docker-image'.
(%options, show-help): Add '--target'.
(guix-pack): Pass TARGET to 'profile-derivation' and to 'build-image'.
* guix/docker.scm (build-docker-image): Add #:system parameter and honor it.
* doc/guix.texi (Invoking guix pack): Document '--target'.
(Additional Build Options): Refer to the Autoconf manual instead of the
obsolete 'configure.info' for cross-compilation.
2017-03-18 00:38:41 +01:00
Ludovic Courtès 176febe377
profiles: Packages in a profile can be cross-compiled.
* guix/profiles.scm (profile-derivation): Add #:target parameter; pass
it to 'gexp->derivation'.
* tests/profiles.scm ("profile-derivation, cross-compilation"): New test.
2017-03-17 23:25:53 +01:00
Ludovic Courtès 48b444304e
pack: Move absolute file name to <compressor>.
* guix/scripts/pack.scm (<compressor>)[package]: Remove.
[command]: Document as being a gexp with an absolute file name.
(%compressors): Adjust accordingly.
(self-contained-tarball): Simplify PATH expression.  Move 'string-join'
for the compressor command on the build side.
(docker-image): Simplify PATH expression.
* tests/pack.scm (%gzip-compressor): Adjust accordingly.
2017-03-17 23:25:53 +01:00
Danny Milosavljevic 4ed64c534a
build/cargo-build-system: Make cargo-build-system install working packages.
* guix/build/cargo-build-system.scm (configure): Remove proprietary
dependencies. Add rust dependencies and configure Cargo to find them.
(build): Also build libraries, not just applications.
(file-sha256): New variable.
(generate-checksums): New variable. Export it.
(touch): New variable.
(install): Generate checksums so Cargo accepts the package.
2017-03-17 16:48:09 +01:00
Danny Milosavljevic 25fb58a3be
build-system/cargo (cargo-build): Add cargo-build-flags, remove configure-flags.
* guix/build-system/cargo.scm (cargo-build): Add cargo-build-flags,
remove configure-flags.
2017-03-17 16:48:08 +01:00
Ricardo Wurmus 2d7c4ae3ee
gnu: r: Rename to r-minimal.
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
Ricardo Wurmus aeb64f3cb2
gnu: r: Do not build recommended packages.
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
Ludovic Courtès db3f2b61ad
pack: Allow for "-S /opt/foo=".
Reported by Andy Wingo.

* guix/scripts/pack.scm (%options): Use 'string-split' instead of
'string-tokenize'.
2017-03-16 22:50:15 +01:00
Ludovic Courtès 9e84ea3673
pack: Honor symlinks in the Docker back-end.
* guix/docker.scm (symlink-source, topmost-component): New procedures.
(build-docker-image): Add #:symlinks parameter and honor it.  Remove
hard-coded /bin symlink.
* guix/scripts/pack.scm (docker-image): Pass #:symlinks to
'build-docker-image'.
2017-03-16 22:50:15 +01:00