10de06bd07
gnu: hwloc: Skip 'linux-libnuma' test.
...
That test would fail on some machines, for instance build machines
behind berlin.guixsd.org.
* gnu/packages/mpi.scm (hwloc)[arguments]: Add 'skip-linux-libnuma-test'
phase.
(hwloc-2.0)[arguments]: Replace it.
2018-04-10 17:44:27 +02:00
323991339e
gnu: hwloc@1: Update to 1.11.10.
...
* gnu/packages/mpi.scm (hwloc): Update to 1.11.10.
2018-03-26 18:24:55 +02:00
d2c036557a
gnu: hwloc@2: Update to 2.0.1.
...
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1.
[source]: Remove 'patches'.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-03-26 18:24:55 +02:00
ce5964074a
gnu: hwloc@1: Update to 1.11.9.
...
* gnu/packages/mpi.scm (hwloc): Update to 1.11.9.
2018-03-26 00:15:52 +02:00
71e789319c
gnu: hwloc: Add 2.0.0.
...
* gnu/packages/mpi.scm (hwloc-2.0): New variable.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-02-06 17:34:34 +01:00
9129804230
gnu: psm: Only use as an input on supported-systems.
...
Syntax help supplied by bavier@member.fsf.org
* gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input
on systems where psm is supported.
* gnu/packages/mpi.scm (openmpi)[inputs]: Same.
2017-11-07 20:41:08 +02:00
f4433d09a1
gnu: openmpi: Add dependency on PSM.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
c971d9ef29
gnu: openmpi: Add "debug" output.
...
This is necessary for one mechanism for attaching parallel debuggers
and is also relevant for the runtime backtrace facility.
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:11:19 +02:00
b08952f1bb
gnu: openmpi: Configure without builtin atomics.
...
See https://www.mail-archive.com/users@lists.open-mpi.org//msg31400.html
* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure with
--enable-builtin-atomics.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-09-12 14:56:59 +02:00
a247fe7b0d
gnu: openmpi: Remove Valgrind from closure.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Elide romio config info to
avoid reference to valgrind.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-12 08:58:27 +02:00
8bfa40eae5
gnu: hwloc: Update to 1.11.8.
...
* gnu/packages/mpi.scm (hwloc): Update to 1.11.8.
2017-09-08 12:48:08 +02:00
6c171ff47c
gnu: openmpi: Configure without vampirtrace.
...
VT is obsoleted by scorep (not currently packaged) and disabling it reduces
the closure considerably.
* mpi.scm (openmpi)[arguments]: Configure without vampirtrace.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
df981d8b36
gnu: openmpi: Modify configuration to reduce closure.
...
devel-headers are only for building MCA components, produce a large
closure and aren't normally packaged. Only the affinity component of
mpi-ext is useful.
* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure
--with-devel-headers and --enable-mpi-ext=all.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
0d97d3cbff
gnu: openmpi: Remove references to compiler pathnames in "_info" programs.
...
This reduces the closure greatly, but note that the Fortran .mod files are
gfortran version-specific, so there should probably be development packages
for each incompatible version. (The runtime is supposed to be more-or-less
version-independent unless the libgfortran soname changes.) There may still
be a case for a separate runtime output.
* gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
327404aeaa
gnu: openmpi: Remove "static" output.
...
--enable-static removes dynamically-loaded MCA components.
* gnu/packages/mpi.scm (openmpi)[outputs]: Remove field.
[arguments]: Don't configure with --enable-static; remove
'move-static-libraries' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
685bef2bd1
gnu: openmpi: Add separate variant with thread-multiple support.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove
"--enable-mpi-thread-multiple".
(openmpi-thread-multiple): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-08-21 17:04:54 +02:00
a099570249
gnu: openmpi: Add RDMA and libfabric support.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
f1be6f5b5a
gnu: openmpi: Add "static" output.
...
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
2017-07-27 11:47:50 +02:00
efcacc17c7
gnu: openmpi: Enable SGE support.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
#:configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0.
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* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:10:08 +02:00
1f9bff4152
gnu: openmpi: Update to 1.10.7.
...
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:09:27 +02:00
798b7678a0
gnu: hwloc: Add "lib" and "debug" outputs.
...
* gnu/packages/mpi.scm (hwloc)[outputs]: New field.
[arguments]: Add 'avoid-circular-references' phase.
(openmpi)[inputs]: Use the "lib" output of HWLOC.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2017-06-30 18:44:41 +02:00
7eb9f31cd9
gnu: hwloc: Use /var as the localstatedir.
...
* gnu/packages/mpi.scm (hwloc)[arguments]: Add #:configure-flags.
2017-06-30 18:44:41 +02:00
77abe3f091
gnu: hwloc: Update to 1.11.7.
...
* gnu/packages/mpi.scm (hwloc): Update to 1.11.7.
2017-05-11 18:05:42 +02:00
9474a4b3ec
gnu: openmpi: Make binaries reproducible.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove timestamps from
source files. Delete installed configure logs.
2016-07-20 21:16:24 -05:00
6876590fd4
gnu: openmpi: Update to 1.10.3.
...
* gnu/packages/mpi.scm (openmpi): Update to 1.10.3.
[source]: Use https.
2016-07-20 21:15:37 -05:00
a2d0e2003f
gnu: hwloc: Update to 1.11.2.
...
* gnu/packages/mpi.scm (hwloc): Update to 1.11.2. Change URLs to https.
2016-04-14 10:20:14 +02:00
37d6b0978c
gnu: hwloc: Build without numactl support on armhf.
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* gnu/packages/mpi.scm (hwloc)[inputs]: Drop numactl on armhf, where the
package is not available.
2016-02-03 21:05:51 +01:00
ac356fd6ab
gnu: openmpi: Update to 1.10.1.
...
* gnu/packages/mpi.scm (openmpi): Update to 1.10.1.
[arguments]: Remove now-unsupported configure flags. Add
--enable-builtin-atomics. Remove development-oriented
--enable-debug.
2015-11-20 11:58:40 -06:00
2f5b6a1f18
gnu: hwloc: Update to 1.11.1.
...
* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
[source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-20 11:58:40 -06:00
c6e59259fd
gnu: hwloc: Propagate libpciaccess.
...
* gnu/packages/mpi.scm (hwloc)[inputs]: Move LIBPCIACCESS to...
[propagated-inputs]: ... here. New field.
2015-08-24 00:28:36 +02:00
38f0a2bade
gnu: openmpi: Upgrade to 1.8.5.
...
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
[native-inputs]: Add perl.
[arguments]: Add configure flags for thread support.
2015-06-29 15:34:36 -05:00
579f5c8a58
gnu: hwloc: Move numactl to inputs.
...
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
[inputs]: ...to here.
[arguments]: New 'refine-libnuma' phase.
2015-06-29 15:34:36 -05:00
ce7d9c989d
gnu: hwloc: Upgrade to 1.10.1.
...
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
[source]: Use patch.
[propagated-inputs]: Remove libpci.
[inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
2015-06-29 15:34:36 -05:00
19afbea136
gnu: Replace versioned gfortran inputs with just "gfortran".
...
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
"gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
(superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
(octave)[native-inputs]: Likewise.
(gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
"gfortran".
2015-06-25 18:28:54 +02:00
29a7c98a42
gnu: Add 'version-prefix' and 'version-major+minor'; use them.
...
The procedure version-prefix truncates a version string to a certain
number of components. version-major+minor is a special case of this,
which extracts the "major.minor" part of the string. Previously this
was handled by an expression common to several packages.
* guix/utils.scm (version-prefix, version-major+minor): New procedures
* gnu/packages/backup.scm (duplicity): Use version-major+minor.
* gnu/packages/cmake.scm (cmake): Likewise.
* gnu/packages/gnome.scm (libbonobo, libbonoboui): Likewise.
* gnu/packages/gnutls.scm (gnutls): Likewise.
* gnu/packages/mail.scm (gmime): Likewise.
* gnu/packages/mpd.scm (mpd): Likewise.
* gnu/packages/mpi.scm (openmpi): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-10-20 15:32:54 +02:00
1691b4cdc6
gnu: openmpi: Add memchecker support.
...
* gnu/packages/mpi.scm (openmpi) [inputs]: Add valgrind. Unpropagate
gfortran. [arguments]: Add configure flags for memchecker.
2014-05-18 11:09:42 -05:00
5b527256ee
gnu: openmpi: Use our hwloc.
...
* gnu/packages/mpi.scm (hwloc): Propagate numactl.
(openmpi)[inputs]: Add hwloc.
[native-inputs]: Add pkg-config.
[argument]: Add hwloc configure flags.
2014-05-12 17:20:32 -05:00
2b0d560a3f
gnu: Add hwloc.
...
* gnu/packages/mpi.scm (hwloc): New variable.
(openmpi): Add TODO comment.
2014-05-09 15:49:08 +02:00
85a84cbd83
gnu: openmpi: Fix typo in download uri
...
* gnu/packages/mpi.scm (openmpi)[origin]: Fix typo.
2014-05-08 17:06:46 -05:00
8ede638c4b
gnu: openmpi: Avoid "open source" verbiage
...
* gnu/packages/mpi.scm (openmpi)[synopsis,description]: Remove mention
of "open source".
2014-05-08 14:48:59 -05:00
fb0e370928
gnu: Add OpenMPI
...
* gnu/packages/mpi.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2014-05-08 12:42:17 -05:00
Ludovic Courtès