Commit Graph

25953 Commits

Author SHA1 Message Date
Oleg Pykhalov 3677e5ee1f
gnu: Add emacs-edit-server.
* gnu/packages/emacs.scm (emacs-edit-server): New public variable.
2018-05-02 20:17:10 +03:00
Oleg Pykhalov 08ff4fd1b1
gnu: Add emacs-crux.
* gnu/packages/emacs.scm (emacs-crux): New public variable.
2018-05-02 20:17:10 +03:00
Oleg Pykhalov 1bd3400d8c
gnu: Add emacs-elisp-refs.
* gnu/packages/emacs.scm (emacs-elisp-refs): New public variable.
2018-05-02 20:17:10 +03:00
Oleg Pykhalov b836c6500a
gnu: Add emacs-loop.
* gnu/packages/emacs.scm (emacs-loop): New public variable.
2018-05-02 20:17:10 +03:00
Oleg Pykhalov be3cf803da
gnu: Add emacs-itail.
* gnu/packages/emacs.scm (emacs-itail): New public variable.
2018-05-02 20:17:10 +03:00
Oleg Pykhalov b12fb29e4d
gnu: Add emacs-seq.
* gnu/packages/emacs.scm (emacs-seq): New public variable.
2018-05-02 20:17:09 +03:00
Oleg Pykhalov 8d907999a9
gnu: Add emacs-npm-mode.
* gnu/packages/emacs.scm (emacs-npm-mode): New public variable.
2018-05-02 20:17:09 +03:00
Oleg Pykhalov a3a876c2a7
gnu: Add emacs-org-mind-map.
* gnu/packages/emacs.scm (emacs-org-mind-map): New public variable.
2018-05-02 20:17:09 +03:00
Oleg Pykhalov 5746ca13dc
gnu: Add emacs-datetime.
* gnu/packages/emacs.scm (emacs-datetime): New public variable.
2018-05-02 20:17:09 +03:00
Oleg Pykhalov b8f910436c
gnu: Add emacs-pulseaudio-control.
* gnu/packages/emacs.scm (emacs-pulseaudio-control): New public variable.
2018-05-02 20:17:09 +03:00
Oleg Pykhalov 74b2f745a2
gnu: Add emacs-md4rd.
* gnu/packages/emacs.scm (emacs-md4rd): New public variable.
2018-05-02 20:17:09 +03:00
Oleg Pykhalov 0acfc481a4
gnu: Add emacs-tree-mode.
* gnu/packages/emacs.scm (emacs-tree-mode): New public variable.
2018-05-02 20:17:09 +03:00
Oleg Pykhalov 20b5b16ee9
gnu: Add emacs-hierarchy.
* gnu/packages/emacs.scm (emacs-hierarchy): New public variable.
2018-05-02 20:17:08 +03:00
Oleg Pykhalov d7403c126c
gnu: Add emacs-rainbow-blocks.
* gnu/packages/emacs.scm (emacs-rainbow-blocks): New public variable.
2018-05-02 20:17:08 +03:00
Oleg Pykhalov f8a88f223e
gnu: Add emacs-load-relative.
* gnu/packages/emacs.scm (emacs-load-relative): New public variable.
2018-05-02 20:17:08 +03:00
Oleg Pykhalov dc58633761
gnu: Add emacs-validate.
* gnu/packages/emacs.scm (emacs-validate): New public variable.
2018-05-02 20:17:08 +03:00
Oleg Pykhalov fb3aeaf7de
gnu: Add emacs-move-text.
* gnu/packages/emacs.scm (emacs-move-text): New public variable.
2018-05-02 20:17:08 +03:00
Oleg Pykhalov 53d4090b0e
gnu: Add emacs-list-utils.
* gnu/packages/emacs.scm (emacs-list-utils): New public variable.
2018-05-02 20:17:08 +03:00
Oleg Pykhalov 707ff55502
gnu: Add emacs-helm-gtags.
* gnu/packages/emacs.scm (emacs-helm-gtags): New public variable.
2018-05-02 20:17:07 +03:00
Oleg Pykhalov f445c75d51
gnu: Add emacs-ewmctrl.
* gnu/packages/emacs.scm (emacs-ewmctrl): New public variable.
2018-05-02 20:17:07 +03:00
Oleg Pykhalov f063e18c75
gnu: Add emacs-helm-bibtex.
* gnu/packages/emacs.scm (emacs-helm-bibtex): New public variable.
2018-05-02 20:17:07 +03:00
Oleg Pykhalov 55d5321093
gnu: Add emacs-biblio.
* gnu/packages/emacs.scm (emacs-biblio): New public variable.
2018-05-02 20:17:07 +03:00
Oleg Pykhalov de8d991289
gnu: Add emacs-parsebib.
* gnu/packages/emacs.scm (emacs-parsebib): New public variable.
2018-05-02 20:17:07 +03:00
Oleg Pykhalov c47c3779d0
gnu: Add emacs-outshine.
* gnu/packages/emacs.scm (emacs-outshine): New public variable.
2018-05-02 20:17:07 +03:00
Oleg Pykhalov a34d562a59
gnu: Add emacs-outorg.
* gnu/packages/emacs.scm (emacs-outorg): New public variable.
2018-05-02 20:17:07 +03:00
Oleg Pykhalov 63e6c4ad99
gnu: Add emacs-makey.
* gnu/packages/emacs.scm (emacs-makey): New public variable.
2018-05-02 20:17:06 +03:00
Oleg Pykhalov 59dc661fc6
gnu: Add emacs-nnreddit.
* gnu/packages/emacs.scm (emacs-nnreddit): New public variable.
2018-05-02 20:17:06 +03:00
Alex Kost f61719d110
gnu: magit: Update to 2.12.1.
* gnu/packages/emacs.scm (magit): Update to 2.12.1.
[propagated-inputs]: Add 'emacs-ghub' and 'emacs-magit-popup'.
[arguments]: Set GHUB_DIR and MAGIT_POPUP_DIR make variables.
[home-page]: Update for the new home.
2018-05-02 19:28:45 +03:00
Alex Kost 0a287457d4
gnu: Add emacs-ghub.
* gnu/packages/emacs.scm (emacs-ghub): New variable.
2018-05-02 19:28:44 +03:00
Tobias Geerinckx-Rice b225a3b837
gnu: libvirt: Update to 4.3.0.
* gnu/packages/virtualization.scm (libvirt): Update to 4.3.0.
2018-05-02 17:48:33 +02:00
Tobias Geerinckx-Rice 78581bef5c
gnu: znc: Use INVOKE.
* gnu/packages/messaging.scm (znc)[arguments]: Substitute INVOKE for
SYSTEM* and explictly return #t from ‘unpack-googletest’ phase.
2018-05-02 15:19:11 +02:00
Tobias Geerinckx-Rice 0ef3c02385
gnu: man-pages: Update to 4.16.
* gnu/packages/man.scm (man-pages): Update to 4.16.
2018-05-02 14:40:14 +02:00
Tobias Geerinckx-Rice b57c6c4234
gnu: perl-html-scrubber: Update to 0.17.
* gnu/packages/web.scm (perl-html-scrubber): Update to 0.17.
[native-inputs]: Add PERL-TEST-DIFFERENCES.
2018-05-02 14:14:19 +02:00
Tobias Geerinckx-Rice 3dae7a05dd
gnu: perl-catalyst-plugin-static-simple: Update to 0.36. [security fixes]
This also fixes the build.

* gnu/packages/web.scm (perl-catalyst-plugin-static-simple): Update to
0.36.
2018-05-02 14:14:03 +02:00
Tobias Geerinckx-Rice 895d04617d
gnu: perl-test-www-mechanize-psgi: Update to 0.38.
* gnu/packages/web.scm (perl-test-www-mechanize-psgi): Update to 0.38.
2018-05-02 14:13:09 +02:00
Tobias Geerinckx-Rice c4a9ef6ccd
gnu: perl-test-www-mechanize: Update to 1.50.
* gnu/packages/web.scm (perl-test-www-mechanize): Update to 1.50.
[propagated-inputs]: Remove now ‘unnecessary’ PERL-HTML-TREE.
2018-05-02 14:13:08 +02:00
Tobias Geerinckx-Rice a7e8e75c4b
gnu: perl-test-www-mechanize: Remove native-inputs.
* gnu/packages/web.scm (perl-test-www-mechanize)[native-inputs]: Remove
both duplicate fields, neither of which affect the output.
2018-05-02 14:13:08 +02:00
Tobias Geerinckx-Rice 8b3a9033ff
gnu: perl-moox-file-configdir: Update to 0.007.
* gnu/packages/perl.scm (perl-moox-file-configdir): Update to 0.007.
2018-05-02 14:13:08 +02:00
Oleg Pykhalov 8cd1e8e849
gnu: Add sound service.
* gnu/services/sound.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add this.
* doc/guix.texi (Sound Services): New chapter.
2018-05-02 15:11:13 +03:00
Marius Bakke fb5b359d77
gnu: inotify-tools: Update to 3.20.1.
* gnu/packages/linux.scm (inotify-tools): Update to 3.20.1.
[source]: Download from new home.  Set file-name.
[native-inputs]: Add AUTOCONF, AUTOMAKE and LIBTOOL.
[arguments]: Add 'bootstrap' phase.
[home-page]: Update to redirected.
2018-05-02 13:03:33 +02:00
Marius Bakke 0aa23e02ea
gnu: transmission: Update to 2.94.
* gnu/packages/bittorrent.scm (transmission): Update to 2.94.
2018-05-02 13:03:14 +02:00
Chris Marusich 4f95a11834
gnu: Add emacs-dedicated.
* gnu/packages/emacs.scm (emacs-dedicated): New variable.
2018-05-01 22:48:33 -07:00
Chris Marusich ba8d8820fc
gnu: Add yubico-piv-tool.
* gnu/packages/security-token.scm (yubico-piv-tool): New variable.
2018-05-01 22:48:33 -07:00
Chris Marusich a6706f30cb
gnu: Add opensc.
* gnu/packages/security-token.scm (opensc): New variable.
2018-05-01 22:44:07 -07:00
Ludovic Courtès 6a65b70145
gnu: emacs-emms: Update to 5.0.
* gnu/packages/emacs.scm (emms): Update to 5.0.
2018-05-01 23:12:52 +02:00
Roel Janssen d233d373ec
gnu: baobab: Update to 3.28.0.
* gnu/packages/gnome.scm (baobab): Update to 3.28.0.
[build-system]: Switch to meson build system.
[native-inputs]: Add desktop-file-utils and gtk+-bin.
2018-05-01 21:14:23 +02:00
Tobias Geerinckx-Rice 9822835fc8
gnu: xonsh: Update to 0.6.2.
* gnu/packages/shells.scm (xonsh): Update to 0.6.2.
2018-05-01 19:29:41 +02:00
Tobias Geerinckx-Rice 63f0b67231
gnu: r-rcpparmadillo: Update to 0.8.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.500.0.
2018-05-01 19:29:41 +02:00
Tobias Geerinckx-Rice bfd7762f12
gnu: r-commonmark: Update to 1.5.
* gnu/packages/statistics.scm (r-commonmark): Update to 1.5.
2018-05-01 19:29:40 +02:00
Tobias Geerinckx-Rice e120533369
gnu: r-mass: Update to 7.3-50.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-50.
2018-05-01 19:29:40 +02:00
Tobias Geerinckx-Rice 506737f191
gnu: liboop: Update to 1.0.1.
* gnu/packages/ssh.scm (liboop): Update to 1.0.1.
[source]: Update source URI.  Remove patch.
* gnu/packages/patches/liboop-mips64-deplibs-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-05-01 19:29:40 +02:00
Efraim Flashner af403cf0e8
gnu: gl.scm: Don't import 'zip' from srfi-1.
* gnu/packages/gl.scm: Hide 'zip' when importing srfi-1.
2018-05-01 19:31:23 +03:00
Efraim Flashner 3ee7b4cc9b
gnu: libva: Build with wayland support.
* gnu/packages/video.scm (libva)[inputs]: Add wayland.
* gnu/packages/gl.scm (libva-without-mesa)[inputs]: Remove wayland.
2018-05-01 19:06:39 +03:00
Efraim Flashner 6e339db06e
gnu: enlightenment: Patch more '/usr/bin' locations.
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: Remove more
hard-coded '/usr/bin' locations.
2018-05-01 19:06:39 +03:00
Efraim Flashner 0b75922281
gnu: enlightenment: Don't enable eeze mount.
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: Remove
configure-flag enabling eeze mount.
2018-05-01 19:06:39 +03:00
Efraim Flashner 3e0e9e1630
gnu: infamous-plugins: Patch all occurrences of compiler optimizations.
* gnu/packages/audio.scm (infamous-plugins)[arguments]: Use 'find-files'
to find all files to remove optimizations.
2018-05-01 19:01:42 +03:00
Leo Famulari 2660e6a319
gnu: syncthing: Update to 0.14.47.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.47.
2018-05-01 10:52:55 -04:00
Leo Famulari 2849c66576
gnu: syncthing: Use Syncthing's fork of the notify module.
* gnu/packages/syncthing.scm (go-github-com-zillode-notify): Replace with ...
(go-github-com-syncthing-notify): ... this new variable.
(syncthing)[inputs]: Adjust accordingly.
2018-05-01 10:52:55 -04:00
Leo Famulari ca14531a5f
gnu: syncthing: Adjust the union of standard library networking modules.
The removed package is no longer needed by Syncthing.

* gnu/packages/syncthing.scm (go-golang-org-x-net-union):
Remove go-golang-org-x-net-context.
2018-05-01 10:52:54 -04:00
Leo Famulari 80da197ad4
gnu: go-github-com-kardianos-osext: Skip the tests.
* gnu/packages/syncthing.scm (go-github-com-kardianos-osext)[arguments]:
Disable the test suite.
2018-05-01 10:52:54 -04:00
Ludovic Courtès 6c46e8e693
gnu: nss-mdns: Update to 0.14.1.
* gnu/packages/avahi.scm (nss-mdns): Update to 0.14.1.
[source](patches): Remove.
[arguments]: Remove #:phases, add #:configure-flags.
2018-05-01 16:01:39 +02:00
Ludovic Courtès 4336e36c94
gnu: nano: Update to 2.9.6.
* gnu/packages/nano.scm (nano): Update to 2.9.6.
2018-05-01 16:01:39 +02:00
Marius Bakke 3dafde0d67
gnu: xf86-video-intel: Update to commit d7dfab62a9853b44bbcd67dac08391d8e5114c97.
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-10.d7dfab6.
[version]: Use GIT-VERSION.
[source](file-name): Use GIT-FILE-NAME.
2018-05-01 15:52:34 +02:00
Marius Bakke c0ef8ae22d
gnu: json-c: Update to 0.13.1.
* gnu/packages/web.scm (json-c): Update to 0.13.1.
[source](snippet): Remove obsolete substitution.
[arguments]: Remove.
2018-05-01 15:29:12 +02:00
Tobias Geerinckx-Rice 2e402618f6
gnu: shadow: Update to 4.6.
* gnu/packages/admin.scm (shadow): Update to 4.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/shadow-CVE-2018-7169.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-05-01 13:38:58 +02:00
Tobias Geerinckx-Rice d13f45646b
gnu: shadow: Return #t from all phases.
* gnu/packages/admin.scm (shadow)[arguments]: Return #t from the
‘set-nscd-file-name’ phase.
2018-05-01 07:31:32 +02:00
Tobias Geerinckx-Rice a2cfe19041
gnu: Use HTTPS for www.boost.org.
* gnu/packages/bioinformatics.scm (libgff)[license]: Use HTTPS.
* gnu/packages/boost.scm (boost-sync)[license]: Likewise.
(boost)[license]: Likewise.
[home-page]: Likewise, and use canonical ‘www’ subdomain.
2018-05-01 06:51:15 +02:00
Leo Famulari 9eecf9bc13
gnu: gimp: Update to 2.10.0.
* gnu/packages/gimp.scm (gimp): Update to 2.10.0.
[inputs]: Add glib-networking, gexiv2, libmypaint, mypaint-brushes and
poppler-data.
[native-inputs]: Add glib:bin.
[source]: Remove obsolete patches and use HTTPS URL.
[home-page]: Use HTTPS URL.
* gnu/packages/patches/gimp-CVE-2017-17784.patch,
gnu/packages/patches/gimp-CVE-2017-17785.patch,
gnu/packages/patches/gimp-CVE-2017-17786.patch,
gnu/packages/patches/gimp-CVE-2017-17787.patch,
gnu/packages/patches/gimp-CVE-2017-17789.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-04-30 21:07:58 -04:00
Leo Famulari 08a752526d
gnu: babl: Update to 0.1.46.
* gnu/packages/gimp.scm (babl): Update to 0.1.46.
2018-04-30 21:07:58 -04:00
Leo Famulari f62633ca2d
gnu: gegl: Update to 0.4.
* gnu/packages/gimp.scm (gegl): Update to 0.4.
[inputs]: Move babl and glib to propagated-inputs.
[propagated-inputs]: Add json-glib.
[arguments]: Re-enable the tests and remove the obsolete 'pre-build'
phase.
[source]: Use HTTPS URL.
* gnu/packages/patches/gegl-CVE-2012-4433.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-04-30 21:07:58 -04:00
Leo Famulari 6d16140665
gnu: Add poppler-data.
* gnu/packages/pdf.scm (poppler-data): New variable.
2018-04-30 21:07:57 -04:00
Leo Famulari 4b5c056aee
gnu: Add mypaint-brushes.
* gnu/packages/gimp.scm (mypaint-brushes): New variable.
2018-04-30 21:07:57 -04:00
Leo Famulari 657687d338
gnu: Add libmypaint.
* gnu/packages/gimp.scm (libmypaint): New variable.
2018-04-30 21:07:57 -04:00
Clément Lassieur cb7c80f67d
services: prosody: Add a default value to the prosody-service-type.
* gnu/services/messaging.scm (prosody-service-type)[default-value]: New field.
2018-05-01 00:25:31 +02:00
Clément Lassieur 9c6a461cf0
services: prosody: Add a description to the prosody-service-type.
* gnu/services/messaging.scm (prosody-service-type)[description]: New field.
2018-05-01 00:25:26 +02:00
Kei Kebreau 1697048ff2
gnu: roguebox-adventures: Update to 2.2.1.
* gnu/packages/games.scm (roguebox-adventures): Update to 2.2.1.
[source]: Use url-fetch instead of git-fetch.
[arguments]: Rewrite install phase for update.
2018-04-30 18:13:02 -04:00
Ludovic Courtès 05c62b1e1d
gnu: guix-register: Reduce the set of dependencies.
* gnu/packages/package-management.scm (guix-register)[native-inputs]
[propagated-inputs]: New field.
2018-05-01 00:05:40 +02:00
fis 1170198d65
gnu: Add amule.
* gnu/packages/networking.scm (amule): New public variable.
* gnu/packages/patches/amule_crypto-6.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-30 23:41:22 +02:00
Ludovic Courtès b989c3e376
gnu: guile-dbi: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-dbi)[inputs]: Switch to GUILE-2.2.
[arguments]: Adjust to use "/2.2".
2018-04-30 23:41:22 +02:00
Ludovic Courtès d5eacecc9f
gnu: guile-redis: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-redis)[inputs]: Switch to
GUILE-2.2.
(guile2.0-redis): New variable.
(guile2.2-redis): Define in terms of 'deprecated-package'.
2018-04-30 23:41:22 +02:00
Ludovic Courtès 2863860b6c
gnu: guile-irregex: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-irregex)[inputs]: Switch to
GUILE-2.2.
(guile2.0-irregex): New variable.
(guile2.2-irregex): Define in terms of 'deprecated-package'.
2018-04-30 23:41:22 +02:00
Ludovic Courtès d58ee08dff
gnu: guile-minikanren: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-minikanren)[inputs]: Switch to
GUILE-2.2.
(guile2.0-minikanren): New variable.
(guile2.2-minikanren): Define in terms of 'deprecated-package'.
2018-04-30 23:41:22 +02:00
Ludovic Courtès d573d8926d
gnu: guile-ics: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-ics)[inputs]: Switch to GUILE-2.2.
[propagated-inputs]: Switch to GUILE-LIB.
2018-04-30 23:41:22 +02:00
Ludovic Courtès 291c2d57e8
gnu: guile-ics: Update to 0.2.0.
* gnu/packages/guile.scm (guile-ics): Update to 0.2.0.
2018-04-30 23:41:21 +02:00
Ludovic Courtès bc96a8b57b
gnu: geiser: Switch to Guile 2.2.
* gnu/packages/emacs.scm (geiser)[inputs]: Switch to GUILE-2.2.
2018-04-30 23:41:21 +02:00
Ludovic Courtès 0e4885af02
gnu: gzochi: Switch to Guile 2.2.
* gnu/packages/game-development.scm (gzochi)[inputs]: Switch to GUILE-2.2.
2018-04-30 23:41:21 +02:00
Ludovic Courtès 1798e9ee97
gnu: gzochi: Build without '-Werror'.
Previously it would fail to build due to GLib deprecation warnings.

* gnu/packages/game-development.scm (gzochi)[arguments]: New field.
2018-04-30 23:41:21 +02:00
Ludovic Courtès 350f50cbd3
gnu: tcc-wrapper: Use Guile 2.2.
* gnu/packages/c.scm (tcc-wrapper)[inputs]: Switch to GUILE-2.2.
2018-04-30 23:41:21 +02:00
Tobias Geerinckx-Rice e64a3b436a
gnu: sudo: Update to 1.8.23.
* gnu/packages/admin.scm (sudo): Update to 1.8.23.
2018-04-30 23:03:39 +02:00
Mark H Weaver 59bc15cf88
gnu: icecat: Add more fixes from upstream mozilla-esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes
from the upstream mozilla-esr52 repository.
* gnu/packages/patches/icecat-bug-1452075.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-04-30 16:46:40 -04:00
Tobias Geerinckx-Rice 1672e7e714
gnu: perl-dbix-class-schema-loader: Update to 0.07049.
* gnu/packages/databases.scm (perl-dbix-class-schema-loader): Update to 0.07049.
2018-04-30 21:36:11 +02:00
Tobias Geerinckx-Rice 435897c0f2
gnu: perl-dbix-class: Update to 0.082841.
* gnu/packages/databases.scm (perl-dbix-class): Update to 0.082841.
2018-04-30 21:36:10 +02:00
Tobias Geerinckx-Rice e56feffec0
gnu: acpica: Update to 20180427.
* gnu/packages/admin.scm (acpica): Update to 20180427.
2018-04-30 21:36:10 +02:00
Tobias Geerinckx-Rice 443c432e90
gnu: reposurgeon: End all phases in truth.
* gnu/packages/version-control.scm (reposurgeon)[arguments]: Return #t
from the ‘install-emacs-data’ phase, instead of COPY-FILE's undefined
result.
2018-04-30 21:36:10 +02:00
Tobias Geerinckx-Rice 53bed20918
gnu: rhash: Update to 1.3.6.
* gnu/packages/crypto.scm (rhash): Update to 1.3.6.
[arguments]: Adjust to extensive build system changes.
2018-04-30 21:36:10 +02:00
Clément Lassieur 539a8d2931
gnu: gajim: Update to 1.0.2.
* gnu/packages/messaging.scm (gajim): Update to 1.0.2.
2018-04-30 21:23:21 +02:00
Clément Lassieur 4b6e2a19af
gnu: python-nbxmpp: Update to 0.6.5.
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.5.
2018-04-30 21:23:15 +02:00
Leo Famulari d0e888c39d
gnu: xournal: Update to 0.4.8.2016.
* gnu/packages/pdf.scm (xournal): Update to 0.4.8.2016.
2018-04-30 14:13:06 -04:00
Marius Bakke a66853810e
Merge branch 'staging' 2018-04-30 19:26:03 +02:00
Fis Trivial fb8966abc4
gnu: python-jedi: Update to 0.12.0, enable tests.
* gnu/packages/python.scm (jedi): Update to 0.12.0, enable tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-30 14:35:17 +02:00
Fis Trivial 8b2597d542
gnu: Add python-parso.
* gnu/packages/python.scm (python-parso, python2-parso): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-30 14:35:05 +02:00
Ludovic Courtès 5986e94118
services: gpm: Provide a default value and document 'gpm-service-type'.
* gnu/services/base.scm (%default-gpm-options): New variable.
(<gpm-configuration>)[gpm, options]: Add default values.
(gpm-service-type)[default-value]: New field.
(gpm-service): Use %DEFAULT-GPM-OPTIONS and mark as deprecated.
* doc/guix.texi (Base Services): Document 'gpm-service-type' and
'gpm-configuration'.  Remove 'gpm-service'.
2018-04-30 14:22:43 +02:00
Ludovic Courtès f675d8b97d
gnu: Remove a couple of old deprecated package aliases.
* gnu/packages/emacs.scm (geiser-next, paredit/old-name): Remove.
2018-04-30 14:22:43 +02:00
Ludovic Courtès 3edbe53924
gnu: skribilo: Update to 0.9.4 and switch to Guile 2.2.
* gnu/packages/skribilo.scm (skribilo): Update to 0.9.4.
[arguments]: Remove #:configure-flags.  Adjust -C flag added to
'skribilo.in' in 'pre-configure' phase.
[inputs]: Switch to GUILE-2.2.
[native-inputs]: Switch to GUILE-LIB and GUILE-READER.
2018-04-30 14:22:43 +02:00
Danny Milosavljevic 70ab130a49
services: Re-export static-networking-service, static-networking-service-type.
* gnu/services/networking.scm: Re-export static-networking-service,
static-networking-service-type.
2018-04-30 10:43:03 +02:00
Rutger Helling d95e4864ba
gnu: wine: Add Kerberos support.
* gnu/packages/wine.scm (wine)[inputs]: Add mit-krb5.
2018-04-30 10:28:45 +02:00
Rutger Helling fc6dace31d
gnu: wine-staging: Update to 3.7.
* gnu/packages/wine.scm (wine-staging): Update to 3.7.
2018-04-30 10:14:37 +02:00
Rutger Helling 6e9e598954
gnu: wine-staging-patchset-data: Update to 3.7.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.7.
2018-04-30 10:14:37 +02:00
Mark H Weaver 8c21c64e59
gnu: linux-libre: Update to 4.16.6.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.6.
(%linux-libre-hash): Update hash.
2018-04-30 03:27:52 -04:00
Mark H Weaver 7be01574b7
gnu: linux-libre@4.14: Update to 4.14.38.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.38.
(%linux-libre-4.14-hash): Update hash.
2018-04-30 03:26:56 -04:00
Mark H Weaver f34ea4afdd
gnu: linux-libre@4.9: Update to 4.9.97.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.97.
2018-04-30 03:26:01 -04:00
Mark H Weaver 3026c61077
gnu: linux-libre@4.4: Update to 4.4.130.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.130.
2018-04-30 03:25:23 -04:00
Danny Milosavljevic d94e81dbfc
services: Add modem-manager-service-type.
* gnu/services/networking.scm (modem-manager-service-type): New variable.
(<modem-manager-configuration>): New variable.
(modem-manager-configuration): New procedure.
(modem-manager-configuration?): New procedure.
* doc/guix.texi (Networking Services): Document it.
* gnu/tests/networking.scm: Import (gnu services base).
2018-04-30 03:47:16 +02:00
Danny Milosavljevic c9436025a9
services: Move static-networking to (gnu services base).
* gnu/services/networking.scm (static-networking, static-networking?,
static-networking-interface, static-networking-ip, static-networking-netmask,
static-networking-gateway, static-networking-requirement,
static-networking-service, static-networking-service-type): Move to...
* gnu/services/base.scm: ...here.
2018-04-30 03:47:14 +02:00
Julien Lepiller f1f4a4f016
gnu: Add java-apache-ivy.
* gnu/package/java.scm (java-apache-ivy): New variable.
* gnu/packages/patches/java-apache-ivy-port-to-latest-bouncycastle.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-04-29 23:23:14 +02:00
Julien Lepiller b0fbf59656
gnu: Add java-jsch-agentproxy-jsch.
* gnu/packages/java.scm (java-jsch-agentproxy-jsch): New variable.
2018-04-29 23:23:09 +02:00
Julien Lepiller 5a46b17b12
gnu: Add java-jsch-agentproxy-connector-factory.
* gnu/packages/java.scm (java-jsch-agentproxy-connector-factory): New
variable.
2018-04-29 23:23:07 +02:00
Julien Lepiller 96d6d9c797
gnu: Add java-jsch-agentproxy-usocket-nc.
* gnu/packages/java.scm (java-jsch-agentproxy-usocket-nc): New variable.
2018-04-29 23:23:05 +02:00
Julien Lepiller 475225e306
gnu: Add java-jsch-agentproxy-pageant.
* gnu/packages/java.scm (java-jsch-agentproxy-pageant): New variable.
2018-04-29 23:23:03 +02:00
Julien Lepiller f438e63835
gnu: Add java-jsch-agentproxy-usocket-jna.
* gnu/packages/java.scm (java-jsch-agentproxy-usocket-jna): New
variable.
2018-04-29 23:23:01 +02:00
Julien Lepiller f1d79c97be
gnu: Add java-jsch-agentproxy-sshagent.
* gnu/packages/java.scm (java-jsch-agentproxy-sshagent): New variable.
2018-04-29 23:22:59 +02:00
Julien Lepiller 470674a541
gnu: Add java-jsch-agentproxy-core.
* gnu/packages/java.scm (java-jsch-agentproxy-core): New variable.
2018-04-29 23:22:56 +02:00
Julien Lepiller 50d70a727b
gnu: Add java-bouncycastle.
* gnu/packages/java.scm (java-bouncycastle): New variable.
(java-bouncycastle-bcprov, java-bouncycastle-bcpkix): Remove variable.
(java-kafka-clients)[inputs]: Use java-bouncycastle.
2018-04-29 23:22:30 +02:00
Vagrant Cascadian adc61d7244
gnu: Add u-boot-mx6cuboxi.
* gnu/packages/bootloaders.scm (u-boot-mx6cuboxi): New variable.
2018-04-29 19:03:05 +02:00
Vagrant Cascadian 95a3422ef1
gnu: Add u-boot-wandboard.
* gnu/packages/bootloaders.scm (u-boot-wandboard): New variable.
2018-04-29 19:03:05 +02:00
Vagrant Cascadian fd0b21d5f6
gnu: make-u-boot-package: Install 'SPL' files also.
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]: Add 'SPL'
files to the files installed during custom 'install phase.
2018-04-29 19:03:03 +02:00
Ludovic Courtès df1eaffc36
file-systems: Expound '%pseudo-file-system-types'.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.

* gnu/system/file-systems.scm (%pseudo-file-system-types): Add
"debugfs", "efivarfs", "hugetlbfs", "overlay", and "securityfs".
2018-04-29 17:55:08 +02:00
Tobias Geerinckx-Rice 8bcda205f5
gnu: utf8proc: Update to 2.1.1.
* gnu/packages/textutils.scm (utf8proc): Update to 2.1.1.
2018-04-29 03:30:14 +02:00
Tobias Geerinckx-Rice 4f447d2f98
gnu: Use HTTPS for julialang.org home pages.
* gnu/packages/textutils.scm (utf8proc)[home-page]: Use HTTPS.
* gnu/packages/julia.scm (julia)[home-page]: Likewise
2018-04-29 03:29:48 +02:00
Fis Trivial a34bc5c913
gnu: python-autopep8: Update to 1.3.5
* gnu/packages/python.scm (python-autopep8): Update to 1.3.5

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-28 23:34:04 +02:00
Fis Trivial 2dab4188ec
gnu: Add python-autograd
* gnu/packages/machine-learning.scm (python-autograd, python2-autograd): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-28 23:33:50 +02:00
Diego Nicola Barbato 3c2d267f4b
gnu: escpr: Update to 1.6.20.
* gnu/packages/cups.scm (escpr): Update to 1.6.20.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-28 23:28:02 +02:00
Ludovic Courtès 5a48a066ab
gnu: gcc-toolchain: Add "static" output.
This allows the use of 'gcc-toolchain' to create statically-linked
executables (requires libc.a.)

* gnu/packages/commencement.scm (make-gcc-toolchain): Add "static"
output.  Add "libc-static" to 'inputs'.  Add call to 'union-build' for
the "static" output.
2018-04-28 22:33:47 +02:00
Kei Kebreau 48167ccd75
gnu: dfc: Update to 3.1.1.
* gnu/packages/admin.scm (dfc): Update to 3.1.1.
2018-04-28 14:40:18 -04:00
Marius Bakke 720d9df908
gnu: notmuch: Update to 0.26.2.
* gnu/packages/mail.scm (notmuch): Update to 0.26.2.
2018-04-28 16:55:39 +02:00
Marius Bakke af574d824a
gnu: godot: Update to 3.0.2.
* gnu/packages/game-development.scm (godot): Update to 3.0.2.
2018-04-28 16:55:39 +02:00
Marius Bakke 5b8d2ace93
gnu: godot: Remove unused bundled libraries from the source.
While at it, also use system libvpx.

* gnu/packages/game-development.scm (godot)[source](snippet): New field.
[arguments]: Add "builtin_libvpx=no" to #:scons-flags.
[inputs]: Add LIBVPX.
2018-04-28 16:55:39 +02:00
Marius Bakke 8311a84416
gnu: godot: Add a file extension to source file name.
* gnu/packages/game-development.scm (godot)[source](file-name): Append ".tar.gz".
2018-04-28 16:55:39 +02:00
Fis Trivial 7fb1530f2f
gnu: python-yapf: Update to 0.21.0.
* gnu/packages/python.scm (python-yapf): Update to 0.21.0.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2018-04-28 17:12:27 +03:00
Jan Nieuwenhuizen 5559e01fe0
gnu: mes: Update to 0.13.
* gnu/packages/mes.scm (mes): Update to 0.13.  Use new gitlab url scheme.
2018-04-28 15:30:49 +02:00
Roel Janssen 21c566a3aa
gnu: virt-manager: Update to 1.5.1.
* gnu/packages/virtualization.scm (virt-manager): Update to 1.5.1.
2018-04-28 10:14:47 +02:00
Roel Janssen a62d455d1d
gnu: fabric: Update to 1.14.0.
* gnu/packages/admin.scm (fabric): Update to 1.14.0;
[native-inputs]: Add python2-pynacl and python2-bcrypt.
2018-04-28 02:14:35 +02:00
Roel Janssen dad9556c5d
gnu: roary: Update to 3.12.0.
* gnu/packages/bioinformatics.scm (roary): Update to 3.12.0.
2018-04-28 01:52:52 +02:00
Roel Janssen 169fa0d813
gnu: gnome-terminal: Update to 3.28.1.
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.28.1.
2018-04-28 01:45:32 +02:00
Roel Janssen 6a71d454de
gnu: vte: Update to 0.52.1.
* gnu/packages/gnome.scm (vte): Update to 0.52.1.
2018-04-28 01:44:29 +02:00
Roel Janssen d36d5229ed
gnu: star: Update to 2.6.0a.
* gnu/packages/bioinformatics.scm (star): Update to 2.6.0a.
2018-04-28 01:24:10 +02:00
Roel Janssen 457fd268ff
gnu: multiqc: Update to 1.5.
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.5.
2018-04-28 01:10:24 +02:00
Roel Janssen 4b93efec28
gnu: express: Link with shared protobuf library.
* gnu/packages/bioinformatics.scm (express): Link with shared protobuf
  library.
2018-04-28 01:07:15 +02:00
Ricardo Wurmus e09d74ecd2
gnu: Add r-codedepends.
* gnu/packages/cran.scm (r-codedepends): New variable.
2018-04-28 01:02:43 +02:00
Roel Janssen 4ffa085875
gnu: bamtools: Update to 2.5.1.
* gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.1.
2018-04-28 00:56:59 +02:00
Roel Janssen d0c75e73d4
gnu: taxtastic: Update to 0.8.5.
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.5.
2018-04-28 00:43:16 +02:00
Roel Janssen 5e3175f743
gnu: nnn: Update to 1.7.
* gnu/packages/admin.scm (nnn): Update to 1.7.
2018-04-28 00:38:31 +02:00
Ludovic Courtès 6ddb59607b
guix system: Report wrong file system 'device' fields.
Previously, if you wrote (device "my-label") without (title 'label),
you'd get:

  guix system: error: stat: No such file or directory: "my-label"

Now you get a proper error and a hint.

Reported by Pierre-Antoine Rouby.

* guix/scripts/system.scm (check-file-system-availability)[literal]: New
variable.  Loop over LITERAL.
* gnu/system/file-systems.scm (%pseudo-file-system-types): New variable.
* guix/ui.scm (display-hint): Make public.
2018-04-27 18:45:02 +02:00
Tobias Geerinckx-Rice c441959819
gnu: libstaroffice: Update to 0.0.6.
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.6.
2018-04-27 15:56:19 +02:00
Tobias Geerinckx-Rice 8b1e89a4ad
gnu: perl-multidimensional: Update to 0.014.
* gnu/packages/perl.scm (perl-multidimensional): Update to 0.014.
2018-04-27 15:56:18 +02:00
Tobias Geerinckx-Rice 6e66835393
gnu: perl-bareword-filehandles: Update to 0.006.
* gnu/packages/perl.scm (perl-bareword-filehandles): Update to 0.006.
2018-04-27 15:56:18 +02:00
Ben Woodcroft 53ec1b7e8b
gnu: vsearch: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.8.0.
2018-04-27 23:20:00 +10:00
Ben Woodcroft 171cf56c2f
gnu: diamond: Update to 0.9.21.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.21.
2018-04-27 23:20:00 +10:00
Ricardo Wurmus a6334e6e8d
gnu: emacs-websocket: Update to 1.10.
* gnu/packages/emacs.scm (emacs-websocket): Update to 1.10.
[source]: Fetch from git.
2018-04-27 13:32:40 +02:00
Ricardo Wurmus 8e71673d2f
gnu: r-robustbase: Update to 0.93-0.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-0.
2018-04-27 13:30:43 +02:00
Ricardo Wurmus 5ce901d59a
gnu: r-r-oo: Update to 1.22.0.
* gnu/packages/statistics.scm (r-r-oo): Update to 1.22.0.
2018-04-27 13:30:43 +02:00
Ricardo Wurmus 97dbc684c8
gnu: r-foreign: Update to 0.8-70.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-70.
2018-04-27 13:30:43 +02:00
Ricardo Wurmus 7f77e5d5fa
gnu: r-metap: Update to 0.9.
* gnu/packages/cran.scm (r-metap): Update to 0.9.
2018-04-27 13:30:43 +02:00
Ricardo Wurmus d4dee0804a
gnu: r-pillar: Update to 1.2.2.
* gnu/packages/cran.scm (r-pillar): Update to 1.2.2.
2018-04-27 13:30:43 +02:00
Ricardo Wurmus deb4894405
gnu: emacs-slack: Update to 0-4.d903954.
* gnu/packages/emacs.scm (emacs-slack): Update to 0-4.d903954.
2018-04-27 13:29:48 +02:00
Chris Marusich a654d3debd
services: Set default <dhcpd-configuration> version to "4".
* gnu/services/networking.scm (<dhcpd-configuration>) <version>: Set the
default to "4" instead of "6"; both our manual and upstream says the default
should be "4".
2018-04-27 01:39:28 -07:00
Tobias Geerinckx-Rice 2216b6f410
gnu: thefuck: Use INVOKE.
* gnu/packages/admin.scm (thefuck)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with explicit #t.
2018-04-27 05:36:55 +02:00
Tobias Geerinckx-Rice 3290f10773
gnu: thefuck: Update to 3.26.
* gnu/packages/admin.scm (thefuck): Update to 3.26.
2018-04-27 05:36:54 +02:00
Tobias Geerinckx-Rice d11edbdf7d
gnu: infamous-plugins: Update to 0.2.04.
* gnu/packages/audio.scm (infamous-plugins): Update to 0.2.04.
2018-04-27 05:36:54 +02:00
Tobias Geerinckx-Rice a9071e5c51
gnu: infamous-plugins: Use HTTPS home page.
* gnu/packages/audio.scm (infamous-plugins)[home-page]: Use HTTPS.
2018-04-27 05:36:54 +02:00
Tobias Geerinckx-Rice 7adaf5b5ad
gnu: drumstick: Update to 1.1.1.
* gnu/packages/music.scm (drumstick): Update to 1.1.1.
[inputs]: Remove fluidsynth.
2018-04-27 05:36:54 +02:00
Tobias Geerinckx-Rice 5346d91523
gnu: mpd: Update to 0.20.19.
* gnu/packages/mpd.scm (mpd): Update to 0.20.19.
2018-04-27 05:36:53 +02:00
Tobias Geerinckx-Rice 53c475d104
gnu: tuxguitar: Update to 1.5.
* gnu/packages/music.scm (tuxguitar): Update to 1.5.
2018-04-27 05:36:53 +02:00
Tobias Geerinckx-Rice d4eae3f7d2
gnu: tuxguitar: Update home page.
The tuxguitar.pw domain is infested with squatters.

* gnu/packages/music.scm (tuxguitar)[home-page]: Update.
2018-04-27 05:36:53 +02:00
Tobias Geerinckx-Rice 15fc96e073
gnu: perl-clone: Update to 0.39.
* gnu/packages/perl.scm (perl-clone): Update to 0.39.
2018-04-27 05:36:53 +02:00
Tobias Geerinckx-Rice 54c3b7bf66
gnu: perl-strictures@2: Update to 2.000004.
* gnu/packages/perl.scm (perl-strictures-2): Update to 2.000004.
2018-04-27 05:36:52 +02:00
Eric Bavier adfc742c42
gnu: ranger: Fix description and tests.
* gnu/packages/disk.scm (ranger)[arguments]: Replace '#:phases' with
'#:test-target'.
[description]: Remove texinfo markup.  'VI' -> 'Vi'.
2018-04-26 21:08:23 -05:00
Eric Bavier 834b0b9a5c
gnu: Add Ranger.
* gnu/packages/disk.scm (ranger): New variable.
2018-04-26 20:54:18 -05:00
Eric Bavier e7323f4c08
gnu: mumps: Update to 5.1.2.
* gnu/packages/maths.scm (mumps): Update to 5.1.2.
2018-04-26 20:54:18 -05:00
Eric Bavier d98e9009a9
gnu: scotch: Update to 6.0.5a.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files.
* gnu/packages/patches/scotch-build-parallelism.patch,
gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (scotch): Update to 6.0.5a.
[source](patches): Adjust accordingly.
2018-04-26 20:54:18 -05:00
Tobias Geerinckx-Rice c2e76b7082
gnu: darktable: Update to 2.4.3.
* gnu/packages/photo.scm (darktable): Update to 2.4.3.
2018-04-27 03:11:50 +02:00
Tobias Geerinckx-Rice 5b292eac73
gnu: quassel: Use HTTPS home page.
* gnu/packages/irc.scm (quassel)[home-page]: Use HTTPS.
2018-04-27 02:56:45 +02:00
Tobias Geerinckx-Rice 72dae07296
gnu: quassel: Update to 0.12.5.
* gnu/packages/irc.scm (quassel): Update to 0.12.5.
[source]: Remove patch.
* gnu/packages/patches/quassel-fix-tls-check.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-04-27 02:56:44 +02:00
Tobias Geerinckx-Rice 1c51b7b4bc
gnu: libetonyek: Update to 0.1.8.
gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.8.
2018-04-27 02:56:44 +02:00
Tobias Geerinckx-Rice fb9232d717
gnu: cpuid: Update to 20180419.
* gnu/packages/linux.scm (cpuid): Update to 20180419.
2018-04-27 02:56:44 +02:00
Tobias Geerinckx-Rice ca2158bb3a
gnu: pcmanfm: Update to 1.3.0.
* gnu/packages/lxde.scm (pcmanfm): Update to 1.3.0.
[source]: Remove patch.
* gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-04-27 02:56:43 +02:00
Tobias Geerinckx-Rice d5db813b38
gnu: libfm: Update to 1.3.0.
* gnu/packages/lxde.scm (libfm): Update to 1.3.0.
2018-04-27 02:56:43 +02:00
Tobias Geerinckx-Rice 6a4c7d311a
gnu: perl-log-any-adapter-log4perl: Update to 0.09.
* gnu/packages/perl.scm (perl-log-any-adapter-log4perl): Update to 0.09.
[source]: Update maintainer URI.
2018-04-27 02:56:43 +02:00
Tobias Geerinckx-Rice e1612fb59c
gnu: perl-safe-isa: Update to 1.000010.
* gnu/packages/perl.scm (perl-safe-isa): Update to 1.000010.
2018-04-27 02:56:42 +02:00
Tobias Geerinckx-Rice c3a17ab7af
gnu: perl-sub-quote: Update to 2.005001.
* gnu/packages/perl.scm (perl-sub-quote): Update to 2.005001.
2018-04-27 02:56:42 +02:00
Tobias Geerinckx-Rice 9b8e38ae3d
gnu: perl-capture-tiny: Update to 0.48.
* gnu/packages/perl.scm (perl-capture-tiny): Update to 0.48.
2018-04-27 02:56:42 +02:00
Tobias Geerinckx-Rice 085a95a71c
gnu: perl-b-hooks-endofscope: Update to 0.24.
* gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.24.
2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice 9960ed6291
gnu: perl-file-sharedir-install: Update to 0.13.
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.13.
2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice a7999e2d63
gnu: perl-test-notabs: Update to 2.02.
* gnu/packages/perl-check.scm (perl-test-notabs): Update to 2.02.
2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice 93a554a0d9
gnu: python-simplejson: Update to 3.14.0.
* gnu/packages/python.scm (python-simplejson): Update to 3.14.0.
2018-04-27 02:56:40 +02:00
Tobias Geerinckx-Rice e3e74e4022
gnu: python2-ndg-httpsclient: Fix build.
This might be a follow-up to a39cc01632
from 2016, which would be neat.

* gnu/packages/python-web.scm (python2-ndg-httpsclient)[arguments]: Use
SUBSTITUTE-KEYWORD-ARGUMENTS to still skip tests.
2018-04-27 02:56:17 +02:00
Christopher Lemmer Webber ae9877fed3
gnu: paperkey: Update to 1.5.
* gnu/packages/gnupg.scm (paperkey): Update to 1.5.
2018-04-26 19:11:27 -05:00
Roel Janssen b43a9eb361
gnu: bedops: Update to 2.4.33.
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.33.
2018-04-27 01:11:57 +02:00
Roel Janssen c829c5ea85
gnu: samtools: Update to 1.8.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.8.
2018-04-27 01:11:47 +02:00
Roel Janssen cbd9f91c32
gnu: bcftools: Update to 1.8.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.8.
* gnu/local.mk: Remove patch.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file.
2018-04-27 01:11:42 +02:00