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24977 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice f63d6188d3
gnu: ogre: Update to 1.10.11. 
* gnu/packages/graphics.scm (ogre): Update to 1.10.11.
 2018-03-12 18:15:20 +01:00
Tobias Geerinckx-Rice 2f17e93974
gnu: gtk-vnc: Update to 0.7.1. 
* gnu/packages/gnome.scm (gtk-vnc): Update to 0.7.1.
[native-inputs]: Add python-wrapper.
 2018-03-12 18:15:20 +01:00
Jelle Licht fe5d4f81be
gnu: node: Use more unbundled dependencies. 
* gnu/packages/node.scm (node)[inputs]: Add icu4c and nghttp2.
[native-inputs]: Add pkg-config.
[arguments]: Add configure flags for using system libraries.
[source]: Remove bundled dependencies.
 2018-03-12 18:04:16 +01:00
Jelle Licht f06e391338
gnu: node: Update to 9.8.0. 
* gnu/packages/node.scm (node): Update to 9.8.0.
[arguments]: Remove 'doc-only' workaround. Re-enable fixed tests.
 2018-03-12 18:04:05 +01:00
Marius Bakke 54130743c5
gnu: libogg: Update to 1.3.3. 
* gnu/packages/xiph.scm (libogg): Update to 1.3.3.
 2018-03-12 18:02:08 +01:00
Rutger Helling b7184cf1a7
gnu: mesa: Update to 17.3.6. 
* gnu/packages/gl.scm (mesa): Update to 17.3.6.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-12 17:57:25 +01:00
Marius Bakke f961231368
gnu: libepoxy: Update to 1.5.0. 
* gnu/packages/gl.scm (libepoxy): Update to 1.5.0.
[arguments]: Remove obsolete substitution.
 2018-03-12 17:56:00 +01:00
Marius Bakke f3b97f4770
gnu: libdrm: Update to 2.4.91. 
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.91.
 2018-03-12 17:51:48 +01:00
Marius Bakke 5f42430367
gnu: alsa-plugins: Update to 1.1.5. 
* gnu/packages/linux.scm (alsa-plugins): Update to 1.1.5.
 2018-03-12 17:48:37 +01:00
Marius Bakke c86e7a893f
gnu: alsa-utils: Update to 1.1.5. 
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.5.
 2018-03-12 17:47:03 +01:00
Marius Bakke 569c33309e
gnu: alsa-lib: Update to 1.1.5. 
* gnu/packages/linux.scm (alsa-lib): Update to 1.1.5.
 2018-03-12 17:46:45 +01:00
Marius Bakke 8aca66be53
gnu: bluez: Update to 5.49. 
* gnu/packages/linux.scm (bluez): Update to 5.49.
 2018-03-12 17:40:21 +01:00
Marius Bakke 9fcec717d3
gnu: nss, nss-certs: Update to 3.36. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.36.
* gnu/packages/certs.scm (nss-certs): Likewise.
 2018-03-12 17:38:55 +01:00
Marius Bakke ddc162afd4
gnu: nspr: Update to 4.19. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.19.
 2018-03-12 17:38:27 +01:00
Marius Bakke 7b5506fc71
gnu: xkbcomp: Update to 1.4.1. 
* gnu/packages/xorg.scm (xkbcomp-intermediate): Update to 1.4.1.
 2018-03-12 17:30:28 +01:00
Marius Bakke a270ba9e01
gnu: libxshmfence: Update to 1.3. 
* gnu/packages/xorg.scm (libxshmfence): Update to 1.3.
 2018-03-12 17:30:28 +01:00
Marius Bakke fe2520c389
gnu: libical: Update to 3.0.3. 
* gnu/packages/calendar.scm (libical): Update to 3.0.3.
 2018-03-12 17:28:14 +01:00
Marius Bakke ee9c7156a4
gnu: xf86-input-wacom: Update to 0.36.0. 
* gnu/packages/xdisorg.scm (xf86-input-wacom): Update to 0.36.0.
 2018-03-12 17:27:07 +01:00
Marius Bakke f4f69c5174
gnu: libwacom: Update to 0.29. 
* gnu/packages/xdisorg.scm (libwacom): Update to 0.29.
 2018-03-12 17:27:07 +01:00
Marius Bakke 285c091e80
gnu: libinput: Update to 1.10.2. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.10.2.
[build-system]: Change to MESON-BUILD-SYSTEM.
[arguments]: Add #:configure-flags to not build documentation.
[native-inputs]: Add CHECK and VALGRIND.  Move CAIRO and GTK+ ...
[inputs]: ... here.  Move LIBEVDEV, LIBWACOM and MTDEV ...
[propagated-inputs]: ... here.
(libinput-minimal)[native-inputs]: Inherit from LIBINPUT.
[inputs]: New field; set to empty list.
[arguments]: Inherit from LIBINPUT.  Adjust to build system change.
 2018-03-12 17:27:07 +01:00
Marius Bakke 3f6c185e0c
gnu: meson: Update to 0.45.0. 
* gnu/packages/build-tools.scm (meson): Update to 0.45.0.
[arguments]: Explicitly disable tests (they were skipped before).
 2018-03-12 17:27:07 +01:00
Marius Bakke d31558632c
gnu: meson-for-build: Update to 0.44.0. 
* gnu/packages/build-tools.scm (meson-for-build)[version]: Remove field.
[source]: Inherit from MESON.
 2018-03-12 17:27:07 +01:00
Marius Bakke b14a04b24b
gnu: meson: Don't wrap the meson executable. 
* gnu/packages/build-tools.scm (meson)[arguments]: Delete WRAP-PHASE.
 2018-03-12 17:27:07 +01:00
Ludovic Courtès c0edb5b543
gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia. 
Partly fixes <https://bugs.gnu.org/30282>.

* gnu/packages/maths.scm (arpack-ng): Update to 3.5.0.
[native-inputs]: New field.
(arpack-ng-3.3.0): New variable.
* gnu/packages/julia.scm (julia)[inputs]: Use ARPACK-NG-3.3.0.
 2018-03-12 16:09:24 +01:00
Ludovic Courtès 93f3b7762e
gnu: automake@1.16: Update to 1.16.1. 
* gnu/packages/autotools.scm (automake-1.16): Update to 1.16.1.
 2018-03-12 16:09:24 +01:00
Rutger Helling 51158d83d8
gnu: wine-staging: Add SDL2 support. 
* gnu/packages/wine.scm (wine-staging)[inputs]: Add sdl2.
 2018-03-12 11:34:01 +01:00
Rutger Helling 3139f18524
gnu: wine64-staging: Update to 3.3. 
* gnu/packages/wine.scm (wine64-staging): Update to 3.3.
[arguments]: Remove 'hardcode-libvulkan-path phase. Add
'patch-source-wine-staging phase.
 2018-03-12 10:52:48 +01:00
Rutger Helling b53b9c8dd1
gnu: wine-staging: Update to 3.3. 
* gnu/packages/wine.scm (wine-staging): Update to 3.3.
[inputs]: Add autoconf, python, util-linux, wine-staging-patchset-data.
[arguments]: Remove 'hardcode-libvulkan-path phase. Add
'patch-source-wine-staging phase.
[home-page]: Change URL.
 2018-03-12 10:52:48 +01:00
Rutger Helling f6246195e5
gnu: Add wine-staging-patchset-data. 
* gnu/packages/wine.scm (wine-staging-patchset-data): New variable.
 2018-03-12 10:52:48 +01:00
Tobias Geerinckx-Rice 162189361e
gnu: perl-datetime-format-strptime: Update to 1.75. 
* gnu/packages/perl.scm (perl-datetime-format-strptime): Update to 1.75.
 2018-03-12 04:58:01 +01:00
Tobias Geerinckx-Rice b8b7bd05ae
gnu: perl-task-weaken: Update to 1.05. 
* gnu/packages/perl.scm (perl-task-weaken): Update to 1.05.
[source]: Update source URI.
 2018-03-12 04:58:01 +01:00
Tobias Geerinckx-Rice 221ff3c097
gnu: perl-ref-util-xs: Update to 0.117. 
* gnu/packages/perl.scm (perl-ref-util-xs): Update to 0.117.
 2018-03-12 04:58:00 +01:00
Tobias Geerinckx-Rice 387a8fd7d0
gnu: perl-class-accessor: Update to 0.51. 
* gnu/packages/perl.scm (perl-class-accessor): Update to 0.51.
 2018-03-12 04:58:00 +01:00
Tobias Geerinckx-Rice 09000b6b6d
gnu: perl-path-tiny: Update to 0.104. 
* gnu/packages/perl.scm (perl-path-tiny): Update to 0.104.
 2018-03-12 04:57:59 +01:00
Tobias Geerinckx-Rice d437a60f3e
gnu: perl-data-dump: Update to 1.23. 
* gnu/packages/perl.scm (perl-data-dump): Update to 1.23.
 2018-03-12 04:57:59 +01:00
Tobias Geerinckx-Rice 631efa496c
gnu: perl-scope-guard: Update to 0.21. 
* gnu/packages/perl.scm (perl-scope-guard): Update to 0.21.
 2018-03-12 04:57:58 +01:00
Tobias Geerinckx-Rice 3b6903495a
gnu: perl-io-stringy: Update to 2.111. 
* gnu/packages/perl.scm (perl-io-stringy): Update to 2.111.
 2018-03-12 04:57:57 +01:00
Tobias Geerinckx-Rice ce2c11e9b1
gnu: perl-getopt-long-descriptive: Update to 0.102. 
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.102.
 2018-03-12 04:57:57 +01:00
Tobias Geerinckx-Rice 6cafe34758
gnu: perl-datetime-timezone: Update to 2.17. 
* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.17.
 2018-03-12 04:57:56 +01:00
Tobias Geerinckx-Rice f372c9faf0
gnu: perl-datetime-locale: Update to 1.17. 
* gnu/packages/perl.scm (perl-datetime-locale): Update to 1.17.
 2018-03-12 04:57:56 +01:00
Tobias Geerinckx-Rice a304f3a2c1
gnu: perl-datetime: Update to 1.46. 
* gnu/packages/perl.scm (perl-datetime): Update to 1.46.
 2018-03-12 04:57:55 +01:00
Tobias Geerinckx-Rice 6d2f72cd58
gnu: perl-json-maybexs: Update to 1.003010. 
* gnu/packages/perl.scm (perl-json-maybexs): Update to 1.003010.
[source]: Update source URI.
 2018-03-12 04:57:55 +01:00
Tobias Geerinckx-Rice a23b131c2d
gnu: perl-io-tty: Update to 1.12. 
* gnu/packages/perl.scm (perl-io-tty): Update to 1.12.
 2018-03-12 04:57:54 +01:00
Tobias Geerinckx-Rice 3592937550
gnu: cereal: Update phase style. 
* gnu/packages/serialization.scm (cereal)[arguments]: Substitute INVOKE
for SYSTEM* and end phases with #t.
 2018-03-12 04:57:54 +01:00
Tobias Geerinckx-Rice 778fb47bcd
gnu: msgpack: Update phase style. 
* gnu/packages/serialization.scm (msgpack)[arguments]: Substitute INVOKE
for SYSTEM* and end phase with #t.
 2018-03-12 04:57:53 +01:00
Tobias Geerinckx-Rice fe0523d457
gnu: msgpack: Use HTTPS home page. 
* gnu/packages/serialization.scm (msgpack)[home-page]: Use HTTPS.
 2018-03-12 04:57:53 +01:00
Tobias Geerinckx-Rice bd971438be
gnu: criu: Update to 3.7. 
* gnu/packages/virtualization.scm (criu): Update to 3.7.
 2018-03-12 04:57:53 +01:00
Tobias Geerinckx-Rice 5dacc645b8
gnu: mingw-w64: Update to 5.0.3. 
* gnu/packages/mingw.scm (mingw-w64): Update to 5.0.3.
 2018-03-12 04:57:52 +01:00
Tobias Geerinckx-Rice 8aaba50071
gnu: mingw-w64: Fix home page and avoid further confusion. 
MinGW-w64 was forked (in rather dramatic fashion) from the original
MinGW.  The two projects remain distinct and MinGW-w64 seems by far the
actively developed of the two.

* gnu/packages/mingw.scm (mingw-w64)[home-page]: Point to the correct
upstream.  Use HTTPS.
[description]: Expand and briefly note the relationship between the
two projects.  Use @dfn.
 2018-03-12 04:57:44 +01:00
Tobias Geerinckx-Rice bb5ca93625
gnu: youtube-dl: Update to 2018.03.10. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.03.10.
 2018-03-11 23:29:51 +01:00
Tobias Geerinckx-Rice 197babfb9d
gnu: python-ipaddress: Update to 1.0.19. 
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.19.
 2018-03-11 23:29:50 +01:00
Tobias Geerinckx-Rice a992423775
gnu: python-kitchen: Update to 1.2.5. 
* gnu/packages/python.scm (python-kitchen): Update to 1.2.5.
 2018-03-11 23:29:50 +01:00
Tobias Geerinckx-Rice 6de86fd5aa
gnu: python-pyaes: Update to 1.6.1. 
* gnu/packages/python-crypto.scm (python-pyaes): Update to 1.6.1.
 2018-03-11 23:29:50 +01:00
Tobias Geerinckx-Rice 0fe2273506
gnu: python-markdown: Update to 2.6.11. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.11.
 2018-03-11 23:29:49 +01:00
Tobias Geerinckx-Rice b9d8472123
gnu: python-tblib: Update to 1.3.2. 
* gnu/packages/python.scm (python-tblib): Update to 1.3.2.
 2018-03-11 23:29:49 +01:00
Tobias Geerinckx-Rice 47772a4e3b
gnu: python-pycryptodome: Update to 3.5.1. 
* gnu/packages/python-crypto.scm (python-pycryptodome): Update to 3.5.1.
 2018-03-11 23:29:49 +01:00
Tobias Geerinckx-Rice 8a19a81768
gnu: python-jmespath: Update to 0.9.3. 
* gnu/packages/python.scm (python-jmespath): Update to 0.9.3.
 2018-03-11 23:29:49 +01:00
Tobias Geerinckx-Rice cd5b6816f8
gnu: python-ly: Update to 0.9.5. 
* gnu/packages/python.scm (python-ly): Update to 0.9.5.
 2018-03-11 23:29:48 +01:00
Tobias Geerinckx-Rice e5c98075f2
gnu: python-rply: Update to 0.7.5. 
* gnu/packages/python.scm (python-rply): Update to 0.7.5.
 2018-03-11 23:29:48 +01:00
Tobias Geerinckx-Rice 4b61374b1b
gnu: python-colorama: Update to 0.3.9. 
* gnu/packages/python.scm (python-colorama): Update to 0.3.9.
 2018-03-11 23:29:48 +01:00
Tobias Geerinckx-Rice b37f005c6b
gnu: python-tqdm: Update to 4.19.6. 
* gnu/packages/python.scm (python-tqdm): Update to 4.19.6.
 2018-03-11 23:29:47 +01:00
Gábor Boskovits 594bd3a08a
gnu: java-jeromq: Fix tests. 
* gnu/packages/patches/java-jeromq-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (java-jeromq)[source](patches): Add it.
[arguments](#test-exclude): Disable more failing tests.
 2018-03-11 20:06:06 +01:00
Ricardo Wurmus bfc007e13e
gnu: java-hamcrest-all: Build with icedtea-8. 
* gnu/packages/java.scm (java-hamcrest-all)[arguments]: Build with icedtea-8;
do not disable tests.
[inputs]: Remove java-hamcrest-core.
 2018-03-11 20:02:10 +01:00
Ricardo Wurmus fb94174fc3
gnu: Add pigx-bsseq. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable.
 2018-03-11 20:01:53 +01:00
Ricardo Wurmus 531afc8a89
gnu: Add pigx-chipseq. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable.
 2018-03-11 20:01:53 +01:00
Ricardo Wurmus f2785bd657
gnu: icedtea-8: Build "out" reproducibly. 
Partially fixes <https://bugs.gnu.org/30730>.

* gnu/packages/java.scm (icedtea-8)[arguments]: Add phases
"patch-keystore" and "strip-jar-timestamps".
[source]: Also patch DIST_ID in "configure" script.
 2018-03-11 11:53:39 +01:00
Tobias Geerinckx-Rice 387428def1
gnu: gambit-c: Update to 4.8.9. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.9.
 2018-03-11 06:42:57 +01:00
Tobias Geerinckx-Rice 1bc11c5ddb
gnu: sssd: Update to 1.16.1. 
* gnu/packages/sssd.scm (sssd): Update to 1.16.1.
 2018-03-11 06:42:57 +01:00
Tobias Geerinckx-Rice 26cd470d3c
gnu: git-remote-gcrypt: Update to 1.0.3. 
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.3.
 2018-03-11 06:42:57 +01:00
Tobias Geerinckx-Rice 4f55b39fa7
gnu: archivemount: Update to 0.8.9. 
* gnu/packages/linux.scm (archivemount): Update to 0.8.9.
 2018-03-11 06:42:56 +01:00
David Thompson 907254e513
gnu: haunt: Update to 0.2.2. 
* gnu/packages/guile.scm (haunt): Update to 0.2.2.
 2018-03-10 21:35:01 -05:00
David Thompson 3c90c7ae37
gnu: guile-syntax-highlight: Update to 0.1. 
* gnu/packages/guile.scm (guile-syntax-highlight): Update to 0.1.
 2018-03-10 21:35:00 -05:00
Efraim Flashner 440b162900
gnu: enlightenment: Use 'loginctl' for system actions. 
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: Use
'loginctl' functions when powering off, sleeping, rebooting or
suspending the system.
 2018-03-10 22:55:42 +02:00
Leo Famulari f55aa0c7b7
gnu: zsh: Fix CVE-2018-{7548,7549}. 
* gnu/packages/patches/zsh-CVE-2018-7548.patch,
gnu/packages/patches/zsh-CVE-2018-7549.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/shells.scm (zsh)[source]: Use them.
 2018-03-10 12:30:53 -05:00
Christopher Baines 488ea71ed8
services: databases: Add postgresql-configuration record exports. 
* gnu/services/databases.scm: Export the record type, and all the field
accessors.
 2018-03-10 16:20:55 +00:00
Christopher Baines 69f7cf2bf4
tests: databases: Add a system test for PostgreSQL. 
* gnu/tests/databases.scm (%postgresql-os, %test-postgresql): New variables.
(run-postgresql-test): New procedure.
 2018-03-10 16:20:55 +00:00
Christopher Baines 936e7a5245
services: Rework the PostgreSQL config file to use a record type. 
For the default config file representation. This makes it possible to more
easily change the configuration file, and have dynamic content.

* gnu/services/databases.scm (<postgresql-config-file>): New record type.
(%default-postgres-config): Remove this, it's been replaced by the
configuration file.
(<postgresql-configuration>): Alter the default for the config file field.
(postgresql-service): Alter the default value for the config-file parameter.
 2018-03-10 16:20:52 +00:00
Ricardo Wurmus 0fa4702c04
gnu: r-minimal: Respect SOURCE_DATE_EPOCH in srcfile. 
Fixes <https://bugs.gnu.org/30729>.

* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace timestamp hack
with patch to "srcfile" and "srcfilecopy".
 2018-03-10 14:25:09 +01:00
Marius Bakke 8e3b852ad0
gnu: xprop: Update to 1.2.3. 
* gnu/packages/xorg.scm (xprop): Update to 1.2.3.
 2018-03-10 11:38:33 +01:00
Marius Bakke 505a65dccf
gnu: xpr: Update to 1.0.5. 
* gnu/packages/xorg.scm (xpr): Update to 1.0.5.
 2018-03-10 11:38:33 +01:00
Marius Bakke cafda73f7e
gnu: xlsfonts: Update to 1.0.6. 
* gnu/packages/xorg.scm (xlsfonts): Update to 1.0.6.
 2018-03-10 11:38:33 +01:00
Marius Bakke 060c82c113
gnu: xkill: Update to 1.0.5. 
* gnu/packages/xorg.scm (xkill): Update to 1.0.5.
 2018-03-10 11:38:33 +01:00
Marius Bakke 19ec5a05a8
gnu: xbacklight: Update to 1.2.2. 
* gnu/packages/xorg.scm (xbacklight): Update to 1.2.2.
 2018-03-10 11:38:32 +01:00
Marius Bakke 79b0f0b7cd
gnu: xwininfo: Update to 1.1.4. 
* gnu/packages/xorg.scm (xwininfo): Update to 1.1.4.
 2018-03-10 11:38:32 +01:00
Marius Bakke 61c70e5485
gnu: xset: Update to 1.2.4. 
* gnu/packages/xorg.scm (xset): Update to 1.2.4.
 2018-03-10 11:38:32 +01:00
Marius Bakke a4f48cc59a
gnu: xwd: Update to 1.0.7. 
* gnu/packages/xorg.scm (xwd): Update to 1.0.7.
 2018-03-10 11:38:32 +01:00
Marius Bakke f20348549f
gnu: xlsclients: Update to 1.1.4. 
* gnu/packages/xorg.scm (xlsclients): Update to 1.1.4.
 2018-03-10 11:38:32 +01:00
Marius Bakke dde360ecb2
gnu: xmessage: Update to 1.0.5. 
* gnu/packages/xorg.scm (xmessage): Update to 1.0.5.
 2018-03-10 11:38:31 +01:00
Marius Bakke 4a4570bea5
gnu: xinit: Update to 1.4.0. 
* gnu/packages/xorg.scm (xinit): Update to 1.4.0.
 2018-03-10 11:38:31 +01:00
Marius Bakke 873ee8a750
gnu: xwud: Update to 1.0.5. 
* gnu/packages/xorg.scm (xwud): Update to 1.0.5.
 2018-03-10 11:38:31 +01:00
Marius Bakke fdf5257e7c
gnu: xsetroot: Update to 1.1.2. 
* gnu/packages/xorg.scm (xsetroot): Update to 1.1.2.
 2018-03-10 11:38:31 +01:00
Marius Bakke c609ee9f55
gnu: xrefresh: Update to 1.0.6. 
* gnu/packages/xorg.scm (xrefresh): Update to 1.0.6.
 2018-03-10 11:38:31 +01:00
Marius Bakke c5b9bde5b2
gnu: xrdb: Update to 1.1.1. 
* gnu/packages/xorg.scm (xrdb): Update to 1.1.1.
 2018-03-10 11:38:31 +01:00
Marius Bakke 7c1119aa0f
gnu: xfontsel: Update to 1.0.6. 
* gnu/packages/xorg.scm (xfontsel): Update to 1.0.6.
 2018-03-10 11:38:30 +01:00
Marius Bakke 04a937f00a
gnu: xcursor-themes: Update to 1.0.5. 
* gnu/packages/xorg.scm (xcursor-themes): Update to 1.0.5.
 2018-03-10 11:38:30 +01:00
Marius Bakke fd2ebe1ed0
gnu: xbitmaps: Update to 1.1.2. 
* gnu/packages/xorg.scm (xbitmaps): Update to 1.1.2.
 2018-03-10 11:38:30 +01:00
Danny Milosavljevic 0803ddf267
linux-initrd: Autoload known-module-aliases. 
* gnu/system/linux-initrd.scm: Autoload known-module-aliases.
 2018-03-10 09:23:00 +01:00
Mark H Weaver e82b61e6dd
gnu: linux-libre: Update to 4.15.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.8.
(%linux-libre-hash): Update hash.
 2018-03-09 20:23:24 -05:00
Mark H Weaver b8605720ac
gnu: linux-libre@4.14: Update to 4.14.25. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.25.
(%linux-libre-4.14-hash): Update hash.
 2018-03-09 20:22:35 -05:00
Ludovic Courtès 8d5c14edf5
linux-initrd: Skip initrd module check when 'modules.alias' can't be found. 
Fixes <https://bugs.gnu.org/30760>.
Reported by Tomáš Čech <sleep_walker@gnu.org>.

* gnu/system/linux-initrd.scm (check-device-initrd-modules): Call
'known-module-aliases' and catch 'system-error around it.  Pass it to
'matching-modules'.
 2018-03-10 00:15:59 +01:00
Ludovic Courtès 464f544739
gnu: 'autoconf-wrapper' is no longer a procedure. 
Fixes <https://bugs.gnu.org/30710>.
Suggested by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.

* gnu/packages/autotools.scm (autoconf-wrapper): Rename to...
(make-autoconf-wrapper): ... this.  Add 'properties' field.
(autoconf-wrapper): New variable.
* gnu/packages/gnunet.scm (guile-gnunet): Adjust accordingly.
* gnu/packages/gnupg.scm (signing-party): Likewise.
* gnu/packages/guile.scm (guile-ics, guile-bash): Likewise.
* gnu/packages/libevent.scm (libuv): Likewise.
* gnu/packages/logging.scm (glog): Likewise.
* gnu/packages/mail.scm (libetpan): Likewise.
* gnu/packages/mate.scm (mate-icon-theme-faenza)
(mate-screensaver): Likewise.
* gnu/packages/package-management.scm (guix): Likewise.
* gnu/packages/sawfish.scm (librep): Likewise.
* gnu/packages/video.scm (motion): Likewise.
* gnu/packages/zile.scm (zile-on-guile): Likewise.
 2018-03-09 23:24:34 +01:00
Mark H Weaver ab9ad13802
gnu: linux-libre@4.1: Update to 4.1.50. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.50.
 2018-03-09 16:31:32 -05:00
Christopher Baines 16bd3291a4
gnu: Update python-django-gravatar2. 
* gnu/packages/django.scm (python-django-gravatar2)[version]: Update from
  1.4.0 to 1.4.2.
  [source]: Update sha256 hash.
  [arguments]: Disable the tests, as the django project for the tests is
  missing.
 2018-03-09 18:18:48 +00:00
Christopher Baines da90f337b3
gnu: Update python-django-filter to 1.1.0. 
* gnu/packages/django.scm (python-django-filter)[version]: Update from 0.14.0
  to 1.1.0.
  [source]: Update sha256 hash.
  [native-inputs]: Add python-djangorestframework and
  python-django-crispy-forms as native inputs, as they are used in the test
  suite.
 2018-03-09 18:18:48 +00:00
Christopher Baines cc534f0c71
gnu: Add python-django-crispy-forms. 
* gnu/packages/django.scm (python-django-crispy-forms): New variable.
 2018-03-09 18:18:48 +00:00
Christopher Baines d5f56e9089
gnu: Add python-djangorestframework. 
* gnu/packages/django.scm (python-djangorestframework): New variable.
 2018-03-09 18:18:44 +00:00
Oleg Pykhalov a9079b4880
tests: mail: Add test for dovecot. 
* gnu/tests/mail.scm (%dovecot-os, %test-dovecot): New variables.
(run-dovecot-test): New procedure.
 2018-03-09 17:24:45 +03:00
Oleg Pykhalov 6310dff1dc
services: dovecot: Copy dovecot.conf to /etc/dovecot. 
Many Dovecot utilities compiled with assumption of ‘/etc/dovecot/dovecot.conf’
existence.

* gnu/services/mail.scm (dovecot-shepherd-service): Move config generation.
Invoke ‘dovecot’ without ‘-c’ flag.
(%dovecot-activation): Copy ‘dovecot.conf’ to ‘/etc/dovecot’.
(dovecot-service-type): Make ‘%dovecot-activation’ non-constant.
 2018-03-09 17:02:31 +03:00
Ricardo Wurmus a539ad867d
gnu: r-rhdf5lib: Make build reproducible. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp
and host system kernel version.
 2018-03-09 11:40:59 +01:00
Ricardo Wurmus d8f46d5234
gnu: hdf5: Do not record the build-time kernel version. 
* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent
the kernel version on the build node from affecting the output.
 2018-03-09 11:20:22 +01:00
Ricardo Wurmus 1b5905fe68
gnu: r-fnn: Remove duplicate definition. 
* gnu/packages/cran.scm (r-fnn)[home-page]: Use HTTPS.
* gnu/packages/statistics.scm (r-fnn): Remove.
 2018-03-08 23:38:41 +01:00
Ricardo Wurmus 22a0c65969
gnu: Add r-phangorn. 
* gnu/packages/bioinformatics.scm (r-phangorn): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus be815dbdda
gnu: Add r-smoother. 
* gnu/packages/cran.scm (r-smoother): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus d10b0952ce
gnu: Add r-fnn. 
* gnu/packages/cran.scm (r-fnn): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus 661bb51e66
gnu: Add r-vim. 
* gnu/packages/cran.scm (r-vim): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus fc784b6672
gnu: Add r-prroc. 
* gnu/packages/cran.scm (r-prroc): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus 94e46cabc1
gnu: Add r-abind. 
* gnu/packages/cran.scm (r-abind): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus 3a563a410a
gnu: Add r-sqldf. 
* gnu/packages/cran.scm (r-sqldf): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus 3dab50d92a
gnu: Add r-gsubfn. 
* gnu/packages/cran.scm (r-gsubfn): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus db80dd4a1d
gnu: Add r-psych. 
* gnu/packages/cran.scm (r-psych): New variable.
 2018-03-08 23:31:56 +01:00
Ricardo Wurmus 35b0c051c5
gnu: Add r-signal. 
* gnu/packages/cran.scm (r-signal): New variable.
 2018-03-08 23:31:55 +01:00
Ricardo Wurmus 53cc59a1d8
gnu: r-ape: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-ape): Move from here...
* gnu/packages/cran.scm (r-ape): ...to here.
 2018-03-08 23:31:55 +01:00
Ricardo Wurmus b7ce825c85
gnu: r-sfsmisc: Update to 1.1-2. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-2.
 2018-03-08 23:31:55 +01:00
Ricardo Wurmus 69c38faa91
gnu: r-nmf: Update to 0.21.0. 
* gnu/packages/statistics.scm (r-nmf): Update to 0.21.0.
 2018-03-08 23:31:55 +01:00
Ricardo Wurmus 1b17fdbe41
gnu: r-openssl: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.1.
 2018-03-08 23:31:55 +01:00
Ricardo Wurmus bbf8540d43
gnu: python-sympy, python2-sympy: Only run core tests. 
* gnu/packages/python.scm (python-sympy, python2-sympy)[arguments]: Move tests
after installation; run only core tests.
 2018-03-08 23:14:10 +01:00
Marius Bakke d8fa1890c7
Merge branch 'master' into staging 2018-03-08 21:21:05 +01:00
Efraim Flashner fee7f8a94e
gnu: nano: Update to 2.9.4. 
* gnu/packages/nano.scm (nano): Update to 2.9.4.
 2018-03-08 20:29:20 +02:00
Ricardo Wurmus 84c195e505
gnu: r-dropbead: Update to 0-2.d746c6f. 
* gnu/packages/bioinformatics.scm (r-dropbead): Update to 0-2.d746c6f.
 2018-03-08 18:53:49 +01:00
Kei Kebreau 7f2f834550
gnu: milkytracker: Actually link with the JACK library. 
* gnu/packages/music.scm (milkytracker)[arguments]: Add appropriate configure
flag.
 2018-03-08 10:09:29 -05:00
Marius Bakke 3e25d2b22e
gnu: python-msgpack-transitional: Use a distinct name. 
* gnu/packages/python.scm (python-msgpack-transitional)[name]: New field.
 2018-03-08 13:23:22 +01:00
Marius Bakke 875fe4b6b6
gnu: nghttp2: Use a fixed variant of tzdata for tests. 
* gnu/packages/web.scm (nghttp2)[native-inputs]: Replace TZDATA with TZDATA-FOR-TESTS.
 2018-03-08 13:23:22 +01:00
Danny Milosavljevic c32e3ddedd
services: agetty: Call default-serial-port only when starting. 
* gnu/services/base.scm (agetty-shepherd-service): Call default-serial-port
only when starting.
 2018-03-08 13:16:30 +01:00
Marius Bakke 770986d541
gnu: feh: Update to 2.25.1. 
* gnu/packages/image-viewers.scm (feh): Update to 2.25.1.
 2018-03-08 12:25:05 +01:00
Ludovic Courtès dffc5ab5e4
vm: Use 9p mount tags below 32 chars. 
Fixes <https://bugs.gnu.org/30667>.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.

* gnu/system/vm.scm (file-system->mount-tag): Use 'sha1' to compute the
tag.
 2018-03-08 11:56:20 +01:00
Ludovic Courtès 3aab885144
gnu: guile: Add 2.2.2. 
* gnu/packages/guile.scm (guile-2.2.2): New variable.
 2018-03-08 11:56:20 +01:00
Ludovic Courtès ca1499ce20
gnu: intelmetool, me-cleaner: Restrict to Intel platforms. 
* gnu/packages/flashing-tools.scm (intelmetool)[supported-systems]: New
field.
(me-cleaner)[supported-systems]: New field.
 2018-03-08 11:56:20 +01:00
Tobias Geerinckx-Rice 338e2852b5
gnu: python-ddt: Update to 1.1.2. 
* gnu/packages/python.scm (python-ddt): Update to 1.1.2.
 2018-03-08 09:07:30 +01:00
Tobias Geerinckx-Rice ef20a6f0b4
gnu: python-ddt: Mark up description. 
* gnu/packages/python.scm (python-ddt)[description]: Use @dfn.
 2018-03-08 09:07:30 +01:00
Tobias Geerinckx-Rice 3d63422c92
gnu: yapet: Update to 1.1. 
* gnu/packages/password-utils.scm (yapet): Update to 1.1.
 2018-03-08 09:07:29 +01:00
Tobias Geerinckx-Rice f95e9a6bca
gnu: keepassxc: Update to 2.3.1. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.1.
 2018-03-08 09:07:29 +01:00
Tobias Geerinckx-Rice 6e076b3d50
gnu: slurm: Update to 17.11.3. 
* gnu/packages/parallel.scm (slurm): Update to 17.11.3.
 2018-03-08 09:07:28 +01:00
Hartmut Goebel 7ac43c44e8
gnu: giflib: Make "reallocarray" private, solve glibc@2.26 conflict. 
Rename the function and move the declaration from gif_lib.h to
gif_lib_private.h to solve conflicts when some .c-file #includes
both stdlib.h and gif_lib.h.
See also https://sourceforge.net/p/giflib/bugs/110/

* gnu/packages/patches/giflib-make-reallocarray-private.patch: New
  file
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/image.scm(giflib)[source](patches): New field.
 2018-03-08 09:05:52 +01:00
Clément Lassieur 254a88199f
gnu: global: Replace GLOBAL with GNU GLOBAL in description. 
* gnu/packages/code.scm (global)[description]: Replace GLOBAL with GNU GLOBAL.
 2018-03-08 09:01:12 +01:00
Rutger Helling a89bf3318f
gnu: vulkan-icd-loader: Update to 1.1.70.0. 
* gnu/packages/vulkan.scm (vulkan-icd-loader): Update to 1.1.70.0.
 2018-03-08 08:53:19 +01:00
Danny Milosavljevic e2d0cf033e
gnu: sunxi-tools: Add cross-libc's "static" output. 
* gnu/packages/admin.scm (sunxi-tools)[native-inputs]: Add cross-libc's
"static" output.
 2018-03-08 01:41:22 +01:00
Danny Milosavljevic e7988175d9
gnu: sunxi-tools: Improve build error reporting. 
* gnu/packages/admin.scm (sunxi-tools)[arguments]<#:phases>[set-environment-up]:
Improve build error reporting.
 2018-03-08 01:41:20 +01:00
Ricardo Wurmus f43857d65d
gnu: emacs-slack: Update to 0-3.9272460. 
* gnu/packages/emacs.scm (emacs-slack): Update to 0-3.9272460.
 2018-03-08 01:24:02 +01:00
Ricardo Wurmus 0bdd5b8ab7
gnu: Add pigx-rnaseq. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable.
 2018-03-07 23:25:36 +01:00
Ricardo Wurmus e2cafc2449
gnu: Add r-algdesign. 
* gnu/packages/cran.scm (r-algdesign): New variable.
 2018-03-07 22:43:38 +01:00
Ricardo Wurmus f64fea1d2c
gnu: Add r-radiant-data. 
* gnu/packages/cran.scm (r-radiant-data): New variable.
 2018-03-07 22:18:38 +01:00
Ricardo Wurmus 5d9b82acfc
gnu: Add r-shinyace. 
* gnu/packages/cran.scm (r-shinyace): New variable.
 2018-03-07 22:18:38 +01:00
Ricardo Wurmus a00968b7a8
gnu: Add r-import. 
* gnu/packages/cran.scm (r-import): New variable.
 2018-03-07 22:18:38 +01:00
Ricardo Wurmus b2dc4cb41c
gnu: Add r-cgdsr. 
* gnu/packages/cran.scm (r-cgdsr): New variable.
 2018-03-07 22:18:38 +01:00
Ludovic Courtès 12ff7f3fc7
gnu: glibc: Add a comment in the patch. 
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: Add a comment.
 2018-03-07 21:39:32 +01:00
Ludovic Courtès 036ed3a830
gnu: glibc-2.26-patch: Remove unneeded 'replacement' field. 
* gnu/packages/base.scm (glibc-2.26-patched): Remove unneeded
'replacement' field.
 2018-03-07 21:39:32 +01:00
Ludovic Courtès 7c788ed227
gnu: commencement: 'glibc-final' inherits the replacement of 'glibc'. 
That was the intent of commit b672a81607,
but that commit left 'glibc-final' ungrafted.

Reported by Ricardo Wurmus at
<https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00435.html>.

* gnu/packages/commencement.scm (glibc-final): Use 'package/inherit' so
that we inherit the 'replacement' of GLIBC.
 2018-03-07 21:39:32 +01:00
Ludovic Courtès 0fccb24765
gnu: commencement: 'glibc-final' now inherits from 'glibc'. 
* gnu/packages/commencement.scm (glibc-final): Inherit from GLIBC
instead of GLIBC-FINAL-WITH-BOOTSTRAP-BASH.
[propagated-inputs]: New fields.
 2018-03-07 21:39:32 +01:00
Ricardo Wurmus 021caafa2c
gnu: Add r-heatmaply. 
* gnu/packages/cran.scm (r-heatmaply): New variable.
 2018-03-07 18:12:42 +01:00
Tobias Geerinckx-Rice f35843674e
gnu: znc: Update to 1.6.6. 
* gnu/packages/messaging.scm (znc): Update to 1.6.6.
 2018-03-07 15:37:14 +01:00
Tobias Geerinckx-Rice 7f1773eaee
gnu: Use HTTPS for zlib.net home pages. 
* gnu/packages/compression.scm (zlib, pigz)[home-page]: Use HTTPS.
 2018-03-07 15:37:14 +01:00
Tobias Geerinckx-Rice 9dae73c31c
gnu: pigz: Update to 2.4. 
* gnu/packages/compression.scm (pigz): Update to 2.4.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice 6c4da3b76a
gnu: meson: Mark up description. 
* gnu/packages/build-tools.scm (meson)[description]: Use @dfn.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice b8b34be61c
gnu: links, lynx, qutebrowser: Update phase style. 
* gnu/packages/web-browsers.scm (links, lynx, qutebrowser)[arguments]:
Substitute INVOKE for SYSTEM and end phases with #t.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice b9499508b4
gnu: keyutils: Update to 1.5.10. 
* gnu/packages/crypto.scm (keyutils): Update to 1.5.10.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice 925102bb98
gnu: cppcheck: Update to 1.82. 
* gnu/packages/check.scm (cppcheck): Update to 1.82.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice d4f5e68e55
gnu: cmdtest: Update to 0.32. 
* gnu/packages/check.scm (cmdtest): Update to 0.32.
 2018-03-07 15:37:12 +01:00
Tobias Geerinckx-Rice 45298300e4
gnu: pam-krb5: Mark up description. 
* gnu/packages/admin.scm (pam-krb5)[description]: Use @code.
 2018-03-07 15:37:12 +01:00
Tobias Geerinckx-Rice 0e6c242bb7
gnu: pam-krb5: Update to 4.8. 
* gnu/packages/admin.scm (pam-krb5): Update to 4.8.
 2018-03-07 15:37:12 +01:00
Tobias Geerinckx-Rice c3d828855a
gnu: mg: Use HTTPS home page. 
* gnu/packages/text-editors.scm (mg)[home-page]: Use HTTPS.
 2018-03-07 15:37:11 +01:00
Tobias Geerinckx-Rice b11481a542
gnu: mg: Update to 20171014. 
* gnu/packages/text-editors.scm (mg): Update to 20171014.
 2018-03-07 15:37:11 +01:00
Tobias Geerinckx-Rice 7649e4269e
gnu: c-reduce: Use HTTPS home page. 
* gnu/packages/debug.scm (c-reduce)[home-page]: Use HTTPS.
 2018-03-07 15:37:11 +01:00
Tobias Geerinckx-Rice 2b30af9541
gnu: c-reduce: Update to 2.6.0. 
* gnu/packages/debug.scm (c-reduce): Update to 2.6.0.
 2018-03-07 15:37:11 +01:00
Marius Bakke 5de561a796
gnu: gnome-todo: Fix compatibility with libical >= 3.0. 
* gnu/packages/patches/gnome-todo-libical-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (gnome-todo)[source](patches): Use it.
 2018-03-07 15:06:22 +01:00
Marius Bakke 4c8413cd61
gnu: gnome-calendar: Update to 3.26.3. 
* gnu/packages/gnome.scm (gnome-calendar): Update to 3.26.3.
 2018-03-07 15:06:22 +01:00
Marius Bakke ac033c7ba1
gnu: evolution-data-server: Update to 3.26.6. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.26.6.
[arguments]: Set RUNPATH in #:configure-flags to match new libdir structure.
Add phase 'dont-override-rpath' to make the build system respect it.
 2018-03-07 15:06:22 +01:00
Mark Meyer 30e43e816b
gnu: python2-gobject@2: Update to 2.28.7 
* gnu/packages/glib.scm (python2-gobject-2): Update to 2.28.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 14:57:10 +01:00
Mark Meyer eaa8292e41
gnu: Add python-pycurl. 
* gnu/packages/python-web.scm (python-pycurl, python2-pycurl): New
variables.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 14:57:10 +01:00
Marius Bakke 9dda6dadf1
gnu: xdriinfo: Update to 1.0.6. 
* gnu/packages/xorg.scm (xdriinfo): Update to 1.0.6.
 2018-03-07 14:53:25 +01:00
Marius Bakke b5ebc1bf8c
gnu: twm: Update to 1.0.10. 
* gnu/packages/xorg.scm (twm): Update to 1.0.10.
[source]: Use bzip-compressed tarball.
 2018-03-07 14:53:25 +01:00
Marius Bakke 5668a365d6
gnu: mkfontscale: Update to 1.1.3. 
* gnu/packages/xorg.scm (mkfontscale): Update to 1.1.3.
 2018-03-07 14:53:24 +01:00
Marius Bakke 0cf985d615
gnu: imagemagick: Update to 6.9.9-37. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-37.
 2018-03-07 14:53:24 +01:00
Marius Bakke e07a44891c
gnu: Add gtksourceviewmm. 
* gnu/packages/gtk.scm (gtksourceviewmm): New public variable.
 2018-03-07 14:53:24 +01:00
Marius Bakke 8e933cb36a
gnu: Use HTTPS on gtkmm.org home pages. 
* gnu/packages/gtk.scm (atkmm, gtkmm)[home-page]: Use HTTPS.
* gnu/packages/gnome.scm (libgnomecanvasmm)[home-page]: Likewise.
* gnu/packages/glib.scm (glibmm)[home-page]: Likewise.
 2018-03-07 14:53:24 +01:00
Marius Bakke 6a49ae7864
gnu: gtkmm: Use the for-test xorg variant for tests. 
* gnu/packages/gtk.scm (gtkmm)[native-inputs]: Replace XORG-SERVER with
XORG-SERVER-1.19.3.
[arguments]: Add #:disallowed-references.
 2018-03-07 14:53:24 +01:00
Marius Bakke 29c7b4d638
gnu: gtkmm: Update to 3.22.2. 
* gnu/packages/gtk.scm (gtkmm): Update to 3.22.2.
[arguments]: Set #:configure-flags.
 2018-03-07 14:53:24 +01:00
Marius Bakke 7700c6ca20
gnu: glibmm: Update to 2.54.1. 
* gnu/packages/glib.scm (glibmm): Update to 2.54.1.
[arguments]: Add #:configure-flags.
 2018-03-07 14:53:23 +01:00
Oleg Pykhalov 06c15ee585
gnu: Add r-colorout. 
* gnu/packages/statistics.scm (r-colorout): New public variable.
 2018-03-07 16:38:26 +03:00
Alex Vong 63d9900296
gnu: youtube-viewer: Add '$out/lib/perl5/site_perl/' to search path. 
Fixes <https://bugs.gnu.org/30671>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/video.scm (youtube-viewer)[arguments]: In 'wrap-program'
phase, add '$out/lib/perl5/site_perl/' to search path.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 11:22:42 +01:00
Charlie Ritter 270750d440
gnu: Add IBM Plex font. 
* gnu/packages/fonts.scm (font-ibm-plex): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 11:22:42 +01:00
Ludovic Courtès abfbdafd0e
linux-initrd: Add a hint for the missing module error. 
* gnu/system/linux-initrd.scm (check-device-initrd-modules): Add a
'&fix-hint'.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès ca23693d28
linux-initrd: Factorize 'check-device-initrd-modules'. 
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Move to...
* gnu/system/linux-initrd.scm (check-device-initrd-modules): ... here.
New procedure.
* po/guix/POTFILES.in: Add it.
* guix/scripts/system.scm (check-initrd-modules)[check-device]: Remove.
Use 'check-device-initrd-modules' instead.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès 6c4458172d
services: file-systems: Include 'user-file-systems' service. 
Previously the KNOWN-FS value used in 'essential-services' would be
incomplete: it would lack all the file systems provided by services that
extend 'file-system-service-type' (/sys/fs/cgroup,
/proc/sys/fs/binfmt_misc, etc.)  Consequently, upon shutdown,
'user-processes' would unmount these file systems before their
corresponding service had been stopped; when their corresponding (e.g.,
'file-system-/proc/sys/fs/binfmt_misc') was stopped, its 'umount' call
would fail.

This was harmless in practice, but this patch makes sure things work as
intended and file systems are unmounted in the right order.

* gnu/services/base.scm (file-system-shepherd-services): Instantiate
'user-file-systems' Shepherd service from here.
(user-unmount-service-type, user-unmount-service): Remove.
* gnu/system.scm (essential-services): Remove call to 'user-unmount-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust comment.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès 366ddc1ac5
services: dicod: Depend on 'user-processes'. 
* gnu/services/dict.scm (dicod-shepherd-service): Add 'requirement'.
 2018-03-07 11:22:41 +01:00
Eric Bavier 2468ca0488
gnu: thefuck: Update to 3.25. 
* gnu/packages/admin.scm (thefuck): Update to 3.25
[inputs]: Add python-pyte.
[native-inputs]: Remove python-setuptools.
* gnu/packages/patches/thefuck-test-environ.patch: Adjust to latest source.
 2018-03-06 23:33:57 -06:00
Julien Lepiller f70666c9ce
gnu: Add maven-resolver-connector-basic. 
* gnu/packages/maven.scm (maven-resolver-connector-basic): New variable.
 2018-03-06 23:06:19 +01:00
Julien Lepiller bca6cf54f4
gnu: Add maven-resolver-util. 
gnu/packages/maven.scm (maven-resolver-util): New variable.
 2018-03-06 23:06:15 +01:00
Julien Lepiller 360537838e
gnu: Add maven-resolver-test-util. 
* gnu/packages/maven.scm (maven-resolver-test-util): New variable.
 2018-03-06 23:06:12 +01:00
Julien Lepiller d85cb53924
gnu: Add maven-resolver-spi. 
* gnu/packages/maven.scm (maven-resolver-spi): New variable.
 2018-03-06 23:05:51 +01:00
Julien Lepiller 41125eaff8
gnu: Add maven-resolver-api. 
* gnu/packages/maven.scm: New file.
(maven-resolver-api): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-06 23:05:34 +01:00
Leo Famulari 613ef763a5
Merge branch 'master' into staging 2018-03-06 13:39:12 -05:00
Leo Famulari 8a325748fb
gnu: isc-dhcp: Update to 4.3.6-P1 [fixes CVE-2018-{5732,5733}]. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
 2018-03-06 13:34:20 -05:00
Leo Famulari 3b5262865c
gnu: syncthing: Update to 0.14.45. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.45.
[inputs]: Remove go-github-com-xtaci-kcp-go,
go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add
go-github-com-pkg-errors.
 2018-03-06 13:24:20 -05:00
Leo Famulari 01794ffce0
gnu: Remove go-github-com-templexxx-xor. 
* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
 2018-03-06 13:24:20 -05:00
Leo Famulari 6482d30472
gnu: Remove go-github-com-templexxx-cpufeat. 
* gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove
variable.
 2018-03-06 13:24:20 -05:00
Leo Famulari 7d02ae4b85
gnu: Remove go-github-com-tjfoc-gmsm-sm4. 
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari 7915ef0bff
gnu: Remove go-github-com-klauspost-reedsolomon. 
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove
variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari abb8973544
gnu: Remove go-github-com-klauspost-cpuid. 
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari eaca421063
gnu: Remove go-github-com-ccding-go-stun. 
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari bb0a84f89d
gnu: Remove go-github-com-xtaci-kcp-go. 
* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari 78f19a4754
gnu: Remove go-github-com-xtaci-smux. 
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
 2018-03-06 13:24:15 -05:00
Marius Bakke 77412c45b1
gnu: re2: Update to 2018-03-01. 
* gnu/packages/regex.scm (re2): Update to 2018-03-01.
 2018-03-06 18:23:42 +01:00
Marius Bakke 37204750b1
gnu: feh: Update to 2.25. 
* gnu/packages/image-viewers.scm (feh): Update to 2.25.
 2018-03-06 18:22:26 +01:00
Marius Bakke 6836c228ae
gnu: iceauth: Update to 1.0.8. 
* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
 2018-03-06 18:16:51 +01:00
Marius Bakke 6f1f8d1312
gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537]. 
See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for
more information about the vulnerabilities.

* gnu/packages/django.scm (python-django): Update to 1.11.11.
 2018-03-06 17:38:12 +01:00
Ricardo Wurmus c072cf57b9
gnu: samtools: Update to 1.7. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus 727d847980
gnu: htslib: Update to 1.7. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus e325c89076
gnu: r-rhdf5: Make build reproducible. 
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus fe58ab013b
gnu: r-lambda-r: Run unit tests. 
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus 08ddb98aef
gnu: r-gtools: Make output deterministic. 
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
 2018-03-06 16:03:04 +01:00
Oleg Pykhalov 5ad13e6cdf
gnu: emacs-transmission: Update to 0.12.1. 
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
 2018-03-06 12:09:02 +03:00
Oleg Pykhalov 69611d3eac
gnu: haskell-mode: Fix find emacs-stream elisp directory. 
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
 2018-03-06 10:34:59 +03:00
Rutger Helling cee03b267c
gnu: ovmf: Fix build and add FIXME. 
* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME
about failing script.
 2018-03-06 08:27:07 +01:00
Gábor Boskovits 0f2778029a
gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version. 
* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>:
Modify fix-version to use the distibution version of java-aqute-bndlib.
 2018-03-05 20:42:48 +01:00
Tobias Geerinckx-Rice c8213ffc52
gnu: perl-email-address: Update to 1.909. 
* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
 2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 1c3de94cff
gnu: perl-sub-quote: Update to 2.005000. 
* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
 2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 503a00597b
gnu: perl-xml-compile-cache: Update to 1.06. 
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
 2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice b5de208e84
gnu: perl-xml-rss: Update to 1.60. 
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
 2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 437e5fae13
gnu: editres: Update to 1.0.7. 
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
 2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice cc7a4bbd27
gnu: tocc, libtocc: Use HTTPS home page. 
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
 2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 55b7cd10c2
gnu: perl-io-socket-ip: Update to 0.39. 
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
 2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 530df311ac
gnu: perl-www-mechanize: Update to 1.87. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
 2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 9599339c59
gnu: openvpn: Mark up description. 
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
 2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 0d34993a65
gnu: openvpn: Update to 2.4.5. 
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
 2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 211748d475
gnu: papi: Use HTTPS home page. 
* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
 2018-03-05 17:32:08 +01:00
Tobias Geerinckx-Rice f7c870f78a
gnu: papi: Fix documentation location. 
* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.
 2018-03-05 17:32:08 +01:00
Rutger Helling 0ebc1b934d
gnu: xpra: Update to 2.2.5. 
* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
 2018-03-05 12:29:37 +01:00
Mark H Weaver 6a4eaafee0
gnu: linux-libre@4.14: Update to 4.14.24. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24.
(%linux-libre-4.14-hash): Update hash.
 2018-03-05 03:43:45 -05:00
Mark H Weaver ee483a5626
gnu: linux-libre@4.9: Update to 4.9.86. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
 2018-03-05 03:43:02 -05:00
Mark H Weaver 88b1a38e26
gnu: linux-libre@4.4: Update to 4.4.120. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
 2018-03-05 03:42:07 -05:00
Christopher Baines 68d70f6ae3
gnu: Add emacs-terraform-mode. 
* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
 2018-03-05 07:48:49 +00:00
Christopher Baines dc97f7e20e
gnu: Add emacs-hcl-mode. 
* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
 2018-03-05 07:48:48 +00:00
Efraim Flashner 16718b6776
services: Add openntpd service. 
* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to
set openntpd daemon's user and localstatedir. Add a custom phase to not
try to create said directory at install time.
* gnu/services/networking.scm (<openntpd-configuration>): New record type.
(openntpd-shepherd-service, openntpd-service-activation): New procedures.
(openntpd-service-type): New variable.
* doc/guix.texi (Networking Services): Add openntpd documentation.
 2018-03-05 08:46:28 +02:00
Tobias Geerinckx-Rice ac1a9ce8b0
gnu: papi: Update phase style. 
* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for
SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.
 2018-03-04 18:03:46 +01:00
Tobias Geerinckx-Rice 635dd0cc96
gnu: tomb: Update phase style. 
* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for
SYSTEM* and end phases with #t.
 2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice 9539016e3a
gnu: tomb: Use HTTPS home page. 
* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS.
 2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice ed36949a9d
gnu: footswitch: Update to 0.1-2.deedd87. 
* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87.
 2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice bd128d5e88
gnu: footswitch: Remove redundant MKDIR-P. 
* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P
before INSTALL-FILE.
 2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice 92793c7b02
gnu: gitolite: Update phase style. 
* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for
SYSTEM* and end phases with #t.
 2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 7730b7179c
gnu: gitolite: Update to 3.6.7. 
* gnu/packages/version-control.scm (gitolite): Update to 3.6.7.
 2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice d035eaa304
gnu: ii, sic: Use HTTPS home pages. 
* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS.
 2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice e0dbead5a7
gnu: ii: Update to 1.8. 
* gnu/packages/irc.scm (ii): Update to 1.8.
 2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 53244d1ffa
gnu: cloc: Update phase style. 
* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM*
and end phases with #t.
 2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 95943ed7dc
gnu: cloc: Update to 1.76. 
* gnu/packages/code.scm (cloc): Update to 1.76.
[source]: Update origin URI scheme.
[inputs]: Add perl-parallel-forkmanager.
 2018-03-04 18:03:43 +01:00
Tobias Geerinckx-Rice 03b7195794
gnu: liblo: Mark up description. 
* gnu/packages/audio.scm (liblo)[description]: Use @dfn.
 2018-03-04 18:03:43 +01:00
Marius Bakke 3e57b7d99b
gnu: multipath-tools: Update to 0.7.4. 
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4.
[source]: Download using HTTPS.
 2018-03-04 17:54:40 +01:00
Marius Bakke 5275f69e6e
gnu: freexl: Update to 1.0.5 [security fixes]. 
Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and
CVE-2018-7439.

* gnu/packages/xml.scm (freexl): Update to 1.0.5.
 2018-03-04 17:54:40 +01:00
Marius Bakke 5b0b520e22
gnu: ceph: Update to 12.2.4. 
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags.  Build with
CMAKE-3.11.  Adjust file substitutions.  Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66.  Add PYTHON2-PRETTYTABLE.
 2018-03-04 17:54:40 +01:00
Marius Bakke 1568cc14fa
gnu: Add cmake@3.11. 
* gnu/packages/cmake.scm (cmake-3.11): New public variable.
 2018-03-04 17:54:40 +01:00
Marius Bakke bbce53c4b3
gnu: Add boost@1.66.0. 
* gnu/packages/boost.scm (boost-1.66): New public variable.
 2018-03-04 17:54:40 +01:00
Marius Bakke 8293d21c66
gnu: java-snappy: Update to 1.1.7. 
* gnu/packages/compression.scm (java-snappy): Update to 1.1.7.
[arguments]: Use INVOKE instead of SYSTEM*.  Avoid CMAKE dependency.  Delete
Hadoop test.  Enable fixed test.
[native-inputs]: Add JAVA-COMMONS-LANG and JAVA-COMMONS-IO.
 2018-03-04 17:54:40 +01:00
Marius Bakke 5a43735722
gnu: snappy: Update to 1.1.7. 
* gnu/packages/compression.scm (snappy): Update to 1.1.7.
[source]: Change to git archive.  Set file-name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.
[description]: Fix infractions.
 2018-03-04 17:54:39 +01:00
Marius Bakke 7fa9cca84a
gnu: rocksdb: Update to 5.10.4. 
* gnu/packages/databases.scm (rocksdb): Update to 5.10.4.
[source]: Substitute the unbundled copy of GNU Parallel.
[arguments]: Add "V=1" "USE_RTTI=1" and
"ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags.  Set #:test-target to
"check_some".  Respect parallel jobs in 'build-release-libraries' phase and
rename to 'build'.
[license]: Update for changes in 5.5.4.
 2018-03-04 17:54:39 +01:00
Danny Milosavljevic 81ed306dee
gnu: inkscape: Disable duplicate icon cache generation. 
* gnu/packages/inkscape.scm (inkscape): Disable duplicate icon cache
generation.
 2018-03-04 15:44:34 +01:00
Danny Milosavljevic 692f6e457e
gnu: abiword: Disable duplicate icon cache generation. 
* gnu/packages/abiword.scm (abiword): Disable duplicate icon cache generation.
 2018-03-04 15:43:46 +01:00
Danny Milosavljevic 64cdd73c22
gnu: python-funcy: Fix tests. 
* gnu/packages/python.scm (python-funcy)[native-inputs]: Delete python-pytest-warnings.
 2018-03-04 15:42:41 +01:00
Gábor Boskovits 48c8622010
gnu: antlr3-3.3: Fix java8 issue. 
* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch.
* gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-03-04 14:16:37 +01:00
Gábor Boskovits 4c763b4d67
gnu: antlr3-3.1: Fix java8 issue. 
* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch.
* gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-03-04 14:13:47 +01:00
Efraim Flashner 82f09c0e8e
gnu: go-github-com-aki237-nscjar: Declare a source file-name. 
* gnu/packages/golang.scm (go-github-com-aki237-nscjar)[source]: Declare
a source file-name.
 2018-03-04 12:38:51 +02:00
Efraim Flashner 6de107b0c9
gnu: go-github-com-davidjpeacock-cli: Declare a source file-name. 
* gnu/packages/golang.scm (go-github-com-davidjpeacock-cli)[source]:
Declare a source file-name.
 2018-03-04 12:38:50 +02:00
Efraim Flashner fdbece74aa
gnu: go-github-com-alsm-ioprogress: Declare a source file-name. 
* gnu/packages/golang.scm (go-github-com-alsm-ioprogress)[source]:
Declare a source file-name.
 2018-03-04 12:38:50 +02:00
Efraim Flashner 661ad6f0c2
gnu: freegish: Declare a source file-name. 
* gnu/packages/games.scm (freegish)[source]: Declare a source file-name.
 2018-03-04 12:38:50 +02:00
Efraim Flashner a1dc853ef4
gnu: disorderfs: Declare a source file-name. 
* gnu/packages/file-systems.scm (disorderfs)[source]: Declare a source
file-name.
 2018-03-04 12:38:50 +02:00
Efraim Flashner aeb95f1f97
gnu: emacs-sly: Declare a source file-name. 
* gnu/packages/emacs.scm (emacs-sly)[source]: Declare a source
file-name.
 2018-03-04 12:38:50 +02:00
Efraim Flashner 5a6f7a6805
gnu: emacs-epl: Declare a source file-name. 
* gnu/packages/emacs.scm (emacs-epl)[source]: Declare a source
file-name.
 2018-03-04 12:38:47 +02:00
Efraim Flashner c553b08b49
gnu: python-apsw: Use invoke. 
* gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.
 2018-03-04 12:05:14 +02:00
Efraim Flashner f5c847ebd0
gnu: python-apsw: Declare a source file-name. 
* gnu/packages/databases.scm (python-apsw)[source]: Declare a source
file-name.
 2018-03-04 12:05:14 +02:00
Efraim Flashner c2c04cde9b
gnu: kurly: Declare a source file-name. 
* gnu/packages/curl.scm (kurly)[source]: Declare a source file-name.
 2018-03-04 12:05:14 +02:00
Efraim Flashner 277be74fa7
gnu: unshield: Declare a source file-name. 
* gnu/packages/compression.scm (unshield)[source]: Declare a source
file-name.
 2018-03-04 12:05:14 +02:00
Efraim Flashner eafe96ea9e
gnu: sfarkxtc: Declare a source file-name. 
* gnu/packages/compression.scm (sfarkxtc)[source]: Declare a source
file-name.
 2018-03-04 12:05:14 +02:00
Efraim Flashner da49d13710
gnu: piranha: Declare a source file-name. 
* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
 2018-03-04 12:05:13 +02:00
Efraim Flashner d9a069c2d9
gnu: libdivsufsort: Declare a source file-name. 
* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
 2018-03-04 12:05:13 +02:00
Efraim Flashner 5110672474
gnu: seek: Declare a source file-name. 
* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
 2018-03-04 12:05:13 +02:00
Efraim Flashner b1d4026dfb
gnu: r-dropbead: Declare a source file-name. 
* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
 2018-03-04 12:05:10 +02:00
Efraim Flashner a1eb506cf3
gnu: faust@2: Declare a source file-name. 
* gnu/packages/audio.scm (faust@2)[source]: Declare a source file-name.
 2018-03-04 11:01:40 +02:00
Efraim Flashner fdf359f82b
gnu: rubberband: Declare a source file-name. 
* gnu/packages/audio.scm (rubberband)[source]: Declare a source
file-name.
 2018-03-04 11:01:40 +02:00
Efraim Flashner 70aa07d296
gnu: qjackrcd: Declare a source file-name. 
* gnu/packages/audio.scm (qjackrcd)[source]: Declare a source file-name.
 2018-03-04 11:01:40 +02:00
Efraim Flashner 6677c99a8b
gnu: lv2-devel: Declare a source file-name. 
* gnu/packages/audio.scm (lv2-devel)[source]: Declare a source file-name.
 2018-03-04 11:01:40 +02:00
Efraim Flashner 35a01e67c8
gnu: lv2-mda-piano: Declare a source file-name. 
* gnu/packages/audio.scm (lv2-mda-piano)[source]: Declare a source
file-name.
 2018-03-04 11:01:39 +02:00
Efraim Flashner a18ee793d7
gnu: papagayo: Declare a source file-name. 
* gnu/packages/animation.scm (papagayo)[source]: Declare a source
file-name.
 2018-03-04 11:01:39 +02:00
Efraim Flashner 7fc944273d
gnu: masscan: Declare a source file-name. 
* gnu/packages/admin.scm (masscan)[source]: Declare a source file-name.
 2018-03-04 11:01:36 +02:00
Christopher Baines bc037c1bd1
services: redis: Add a default-value to the redis-service-type. 
* gnu/packages/databases.scm (redis-service-type)[default-value]: Set
  to (redis-configuration).
 2018-03-03 23:52:26 +00:00
Christopher Baines e903738f86
services: mysql: Add a default-value to the mysql-service-type. 
* gnu/services/databases.scm (mysql-service-type)[default-value]: Set
  to (mysql-configuration).
 2018-03-03 23:52:25 +00:00
Christopher Baines 1e6b9c6e16
services: postgresql: Add a default-value to the postgresql-service-type. 
* gnu/packages/databases.scm (<postgresql-configuration>)
  [config-file,data-directory]: Add default.
  (postgresql-service-type)[default-value]:
  Set to (postgresql-configuration).
 2018-03-03 23:52:23 +00:00
Danny Milosavljevic 8b2219d847
linux-modules: Add module-aliases. 
* gnu/build/linux-modules.scm (module-aliases): New variable.
 2018-03-03 23:40:02 +01:00
Tobias Geerinckx-Rice c94752ad22
gnu: tor: Update to 0.3.2.10 [security fixes]. 
This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490),
TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well.

* gnu/packages/tor.scm (tor): Update to 0.3.2.10.
 2018-03-03 21:31:08 +01:00
Ricardo Wurmus 1adeef3194
gnu: Add dropseq-tools. 
* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
 2018-03-03 21:28:05 +01:00
Ricardo Wurmus 72299db9fe
gnu: Add java-picard-2.10.3. 
* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
 2018-03-03 21:28:02 +01:00
Ricardo Wurmus 719fa958f3
gnu: Add java-htsjdk-2.10.1. 
* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
 2018-03-03 21:27:59 +01:00
Ricardo Wurmus 9a599c17b7
gnu: Add java-htsjdk-latest. 
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
 2018-03-03 21:27:57 +01:00
Ricardo Wurmus 9ac7db1830
gnu: Add java-biojava-alignment-4.0. 
* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
 2018-03-03 21:27:56 +01:00
Ricardo Wurmus 5528f9e8f0
gnu: Add java-biojava-phylo-4.0. 
* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
 2018-03-03 21:27:53 +01:00
Ricardo Wurmus e44da58c16
gnu: Add java-biojava-core-4.0. 
* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
 2018-03-03 21:27:51 +01:00
Ricardo Wurmus 22c09c335b
gnu: Add java-biojava-alignment. 
* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
 2018-03-03 21:27:48 +01:00
Ricardo Wurmus b28c803708
gnu: Add java-biojava-phylo. 
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
 2018-03-03 21:27:46 +01:00
Ricardo Wurmus 10645b9212
gnu: Add java-forester-1.005. 
* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
 2018-03-03 21:27:44 +01:00
Ricardo Wurmus f09d16e594
gnu: Add java-forester. 
* gnu/packages/bioinformatics.scm (java-forester): New variable.
 2018-03-03 21:27:41 +01:00
Ricardo Wurmus 93abc975fe
gnu: Add java-openchart2. 
* gnu/packages/java.scm (java-openchart2): New variable.
 2018-03-03 21:27:39 +01:00
Ricardo Wurmus 5fef15e506
gnu: Add java-biojava-core. 
* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
 2018-03-03 21:27:36 +01:00
Ricardo Wurmus dbb3581383
gnu: Add java-jdistlib. 
* gnu/packages/statistics.scm (java-jdistlib): New variable.
 2018-03-03 21:27:33 +01:00
Ricardo Wurmus 4e92911c82
gnu: Add java-jtransforms. 
* gnu/packages/algebra.scm (java-jtransforms): New variable.
 2018-03-03 21:27:30 +01:00
Ricardo Wurmus 24074b0bdd
gnu: Add java-jlargearrays. 
* gnu/packages/algebra.scm (java-jlargearrays): New variable.
 2018-03-03 21:27:27 +01:00
Ricardo Wurmus c8d996080e
gnu: Add java-la4j. 
* gnu/packages/algebra.scm (java-la4j): New variable.
 2018-03-03 21:27:21 +01:00
Ricardo Wurmus bd975831c6
gnu: Add fastqc. 
* gnu/packages/bioinformatics.scm (fastqc): New variable.
 2018-03-03 21:21:48 +01:00
Ricardo Wurmus 2f0d041816
gnu: Add java-cisd-jhdf5. 
* gnu/packages/java.scm (java-cisd-jhdf5): New variable.
 2018-03-03 21:21:48 +01:00
Ricardo Wurmus 04ddca26e6
gnu: Add java-cisd-args4j. 
* gnu/packages/java.scm (java-cisd-args4j): New variable.
 2018-03-03 21:21:47 +01:00
Ricardo Wurmus 30d554732a
gnu: Add java-cisd-base. 
* gnu/packages/java.scm (java-cisd-base): New variable.
 2018-03-03 21:21:47 +01:00
Ricardo Wurmus f9e0fcb28f
gnu: Add texlive-fonts-iwona. 
* gnu/packages/tex.scm (texlive-fonts-iwona): New variable.
 2018-03-03 21:21:47 +01:00
Clément Lassieur bdcf0e6fd4
services: messaging: Prosody config supports file-like objects. 
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/configuration.scm (serialize-configuration,
serialize-maybe-stem, serialize-package): Return strings or string-valued
gexps (these procedures were only used for their side-effects).
* gnu/services/messaging.scm (serialize-field, serialize-field-list,
enclose-quotes, serialize-raw-content, serialize-ssl-configuration,
serialize-virtualhost-configuration-list,
serialize-int-component-configuration-list,
serialize-ext-component-configuration-list,
serialize-virtualhost-configuration, serialize-int-component-configuration,
serialize-ext-component-configuration, serialize-prosody-configuration):
Return strings or string-valued gexps and stop printing.
(prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with
MIXED-TEXT-FILE instead of using its output with PLAIN-FILE.
(serialize-non-negative-integer, serialize-non-negative-integer-list): Convert
numbers to strings.
(file-object?, serialize-file-object, file-object-list?,
serialize-file-object-list): New procedures.
(ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths,
groups-file]: Replace FILE-NAME with FILE-OBJECT.
* guix/gexp.scm (file-like?): New exported procedure.
 2018-03-03 18:21:52 +01:00
Nicolas Goaziou fb547c3429
gnu: dictionaries: Add copyright line. 
* gnu/packages/dictionaries.scm: Add copyright line.
 2018-03-03 14:23:17 +01:00
Nicolas Goaziou 5e332c57d1
gnu: wireshark: Update to 2.4.5. 
* gnu/packages/networking.scm (wireshark): Update to 2.4.5.
 2018-03-03 14:21:20 +01:00
Nicolas Goaziou 0645da3fe3
gnu: grammalecte: Update to 0.6.2. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2.
[arguments]: Remove.
 2018-03-03 14:06:43 +01:00
Christopher Baines 62b138caf5
gnu: Add ruby-iruby. 
* gnu/packages/ruby.scm (ruby-iruby): New variable.
 2018-03-03 12:51:27 +00:00
Christopher Baines 8279b1d3b1
gnu: Add ruby-mimemagic. 
* gnu/packages/ruby.scm (ruby-mimemagic): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines b03eb6acb4
gnu: Add ruby-data_uri. 
* gnu/packages/ruby.scm (ruby-data_uri): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines d0afff263c
gnu: Add ruby-cztop. 
* gnu/packages/ruby.scm (ruby-cztop): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines fe5dd5f446
gnu: Add ruby-czmq-ffi-gen. 
* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines afdb437c82
gnu: Add ruby-bond. 
* gnu/packages/ruby.scm (ruby-bond): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines a8d2bf3cab
gnu: Add ruby-bacon-bits. 
* gnu/packages/ruby.scm (ruby-bacon-bits): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines cf646acf96
gnu: Add ruby-mocha-on-bacon. 
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
 2018-03-03 12:51:25 +00:00
Christopher Baines 433dc74611
gnu: networking: Add czmq. 
* gnu/packages/networking.scm (czmq): New variable.
 2018-03-03 12:51:23 +00:00
Tobias Geerinckx-Rice add928d35f
gnu: ghc-refact: Fix typo in description. 
* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo.
 2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice 75377c6c48
gnu: quagga: Update to 1.2.4. 
* gnu/packages/networking.scm (quagga): Update to 1.2.4.
 2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice e6d30cf755
gnu: conky: Remove redundant MKDIR-P. 
* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P.
 2018-03-03 13:27:17 +01:00
Tobias Geerinckx-Rice 9d13f82da8
gnu: sslh: Update to 1.19c. 
* gnu/packages/networking.scm (sslh): Update to 1.19c.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice dbefd3ff72
gnu: wv: Edit description. 
Wv is still unmaintained – this just makes it more obvious.

* gnu/packages/wv.scm (wv)[description]: Mention the product versions in
addition to internal file format ones.  Align more closely with the
upstream description.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice 83a9003c5d
gnu: libseccomp: Update to 2.3.3. 
* gnu/packages/linux.scm (libseccomp): Update to 2.3.3.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice 74a2f8ff1f
gnu: hdparm: Update to 9.54. 
* gnu/packages/linux.scm (hdparm): Update to 9.54.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice f4009ade25
gnu: sdl2: Update to 2.0.8. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
 2018-03-03 13:27:15 +01:00
Ricardo Wurmus ec8b3d48ff
gnu: r-httpuv: Update to 1.3.6.2. 
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
 2018-03-03 10:46:35 +01:00
Ricardo Wurmus fac40f38fe
gnu: r-dbi: Update to 0.8. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
 2018-03-03 10:46:35 +01:00
Ricardo Wurmus 081d143d3b
gnu: r-performanceanalytics: Update to 1.5.2. 
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2.
[propagated-inputs]: Add r-quadprog.
[native-inputs]: Remove gfortran.
 2018-03-03 10:46:35 +01:00
Ludovic Courtès eac026e5c8
linux-initrd: Add virtio modules to '%base-initrd-modules'. 
Fixes a regression in installation tests, whereby 'guix system init'
would report that virtio modules are missing for the target devices.
In practice virtio modules were always available since 'base-initrd' was
always called with #:virtio? #t.  This commit simply moves them to
'%base-initrd-modules' so that 'guix system' knows they're available.

Reported by Danny Milosavljevic <dannym@scratchpost.org> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112>.

* gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio
modules.
(base-initrd): Remove #:virtio? and 'virtio-modules'.
* gnu/system/vm.scm (expression->derivation-in-linux-vm)
(system-qemu-image, virtualized-operating-system): Remove uses of
 #:virtio?.
* doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc.
 2018-03-03 09:41:21 +01:00
Ludovic Courtès f850e0da8e
system: beaglebone-black: Use 'initrd-modules'. 
* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules'
instead of 'initrd'.
 2018-03-03 09:41:21 +01:00
Ludovic Courtès 5a3716aebf
vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd. 
Fixes a regression introduced in
bc499b113a, whereby the default initrd
used by 'expression->derivation-in-linux-vm' would lack all the usual
modules: virtio, nls_iso8859-1, etc.

* gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass
 #:linux-modules to 'base-initrd'.
 2018-03-03 09:41:21 +01:00
Ludovic Courtès 3cb3a4e6e5
linux-initrd: 'file-system-modules' returns the right module list. 
Fixes a bug whereby, for an "iso9660" file system, it would return
'("iso9660" "isofs"), i.e., both the key and the value.

Reported by Danny Milosavljevic <dannym@scratchpost.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115>.

* gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns
a key/value pair; match it.
 2018-03-03 09:41:21 +01:00
Ricardo Wurmus 3ede1550e8
gnu: cutadapt: Update to 1.16. 
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
 2018-03-02 23:44:16 +01:00
Ricardo Wurmus 62a4b952c0
gnu: python-xopen: Update to 0.3.2. 
* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
 2018-03-02 23:43:55 +01:00
Ricardo Wurmus fa5965990d
gnu: Add r-hpar. 
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-02 23:24:57 +01:00
Ricardo Wurmus 2a112be09a
gnu: Add r-powerplus. 
* gnu/packages/cran.scm (r-powerplus): New variable.
 2018-03-02 23:07:26 +01:00
Ricardo Wurmus d976454c6b
gnu: Add r-np. 
* gnu/packages/cran.scm (r-np): New variable.
 2018-03-02 23:07:20 +01:00
Ricardo Wurmus 7b81a7eabf
gnu: Add r-phontools. 
* gnu/packages/cran.scm (r-phontools): New variable.
 2018-03-02 23:07:12 +01:00
Ricardo Wurmus 68b6a67e94
gnu: Add r-complexplus. 
* gnu/packages/cran.scm (r-complexplus): New variable.
 2018-03-02 23:07:04 +01:00
Ricardo Wurmus f96eda90d5
gnu: Add r-expm. 
* gnu/packages/cran.scm (r-expm): New variable.
 2018-03-02 23:06:57 +01:00
Ricardo Wurmus 7531ee842c
gnu: Add r-trend. 
* gnu/packages/cran.scm (r-trend): New variable.
 2018-03-02 23:06:50 +01:00
Ricardo Wurmus d32e572489
gnu: Add r-cubature. 
* gnu/packages/cran.scm (r-cubature): New variable.
 2018-03-02 23:06:41 +01:00
Ricardo Wurmus 6615a36421
gnu: Add r-urca. 
* gnu/packages/cran.scm (r-urca): New variable.
 2018-03-02 23:06:33 +01:00
Ricardo Wurmus 5b25bc55dc
gnu: Add r-fractal. 
* gnu/packages/cran.scm (r-fractal): New variable.
 2018-03-02 23:06:26 +01:00
Ricardo Wurmus 19da7fe314
gnu: Add r-extradistr. 
* gnu/packages/cran.scm (r-extradistr): New variable.
 2018-03-02 23:06:17 +01:00
Ricardo Wurmus 4993a02ad7
gnu: Add r-tsa. 
* gnu/packages/cran.scm (r-tsa): New variable.
 2018-03-02 23:06:10 +01:00
Ricardo Wurmus a2c079a780
gnu: Add r-wmtsa. 
* gnu/packages/cran.scm (r-wmtsa): New variable.
 2018-03-02 23:06:00 +01:00
Ricardo Wurmus b6dc325538
gnu: Add r-tseries. 
* gnu/packages/cran.scm (r-tseries): New variable.
 2018-03-02 23:05:52 +01:00
Ricardo Wurmus dceb159206
gnu: Add r-quantmod. 
* gnu/packages/cran.scm (r-quantmod): New variable.
 2018-03-02 23:05:43 +01:00
Ricardo Wurmus 0be7effefa
gnu: Add r-sapa. 
* gnu/packages/cran.scm (r-sapa): New variable.
 2018-03-02 23:05:35 +01:00
Ricardo Wurmus 034ac9d67a
gnu: Add r-ifultools. 
* gnu/packages/cran.scm (r-ifultools): New variable.
 2018-03-02 23:05:14 +01:00
Ricardo Wurmus d3cb62e58d
gnu: Add r-splus2r. 
* gnu/packages/cran.scm (r-splus2r): New variable.
 2018-03-02 23:05:02 +01:00
Ricardo Wurmus 0b64332c74
gnu: Add r-leaps. 
* gnu/packages/cran.scm (r-leaps): New variable.
 2018-03-02 23:03:10 +01:00
Ricardo Wurmus 93c21ddc86
gnu: Add r-ttr. 
* gnu/packages/cran.scm (r-ttr): New variable.
 2018-03-02 22:55:10 +01:00
Ricardo Wurmus 4e35c4290e
gnu: Add r-rbiofabric. 
* gnu/packages/graph.scm (r-rbiofabric): New variable.
 2018-03-02 22:23:18 +01:00
Ricardo Wurmus 1088744d87
gnu: Add r-sna. 
* gnu/packages/cran.scm (r-sna): New variable.
 2018-03-02 22:23:18 +01:00
Ricardo Wurmus 07a2f34d5c
gnu: Add r-statnet-common. 
* gnu/packages/cran.scm (r-statnet-common): New variable.
 2018-03-02 22:23:18 +01:00
Ricardo Wurmus 5f4565b18f
gnu: Add r-network. 
* gnu/packages/cran.scm (r-network): New variable.
 2018-03-02 22:23:18 +01:00
Tobias Geerinckx-Rice b01a1b34f2
gnu: nghttp2: Update to 1.31.0. 
* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
 2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 6fda93e6c8
gnu: libpsl: Update to 0.20.1. 
* gnu/packages/web.scm (libpsl): Update to 0.20.1.
 2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 5658b4ce69
gnu: zerofree: Update to 1.1.1. 
* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
 2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice a40f732bb6
gnu: python-webencodings: Fix typo in description. 
* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
 2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 139ecdee8e
gnu: delta: Remove redundant code. 
* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P
calls.
 2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice defe0282c2
gnu: perl-mozilla-ca: Update to 20180117. 
* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117.
 2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice dc8584d2b1
gnu: perl-test-harness: Update to 3.41. 
* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41.
 2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice 6e48fbb19a
gnu: highlight: Don't hard-code Lua version. 
* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the
Lua prefix programatically instead of hard-coding it.
 2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice 3a5c02777d
gnu: highlight: Update to 3.42. 
* gnu/packages/pretty-print.scm (highlight): Update to 3.42.
 2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 467834d550
gnu: ghc-abstract-deque: Fix typos in description. 
* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos.
 2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice d338321ddb
gnu: qscintilla: Use HTTPS home page. 
* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS.
 2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 2c1cc27f8f
gnu: fortify-headers: Update to 0.9. 
* gnu/packages/suckless.scm (fortify-headers): Update to 0.9.
 2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 5c0f68e844
gnu: fossil: Update phase style. 
* gnu/packages/version-control.scm (fossil)[arguments]: Substitute
INVOKE for SYSTEM* and end phases with #t.
 2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice f136c8f23d
gnu: gnome-mpv: Update to 0.14. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.14.
 2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 65a3c342b0
gnu: ath9k-htc-firmware: Use INSTALL-FILE. 
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute
INSTALL-FILE for COPY-FILE with MKDIR-P.
 2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice f563d19904
gnu: ovmf: Update phase style. 
* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and
end phases with #t.
 2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 0dae492195
gnu: ovmf: Use HTTPS home page. 
* gnu/packages/firmware.scm (ovmf)[home-page]: Use HTTPS.
 2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 3ebf12ea0e
gnu: b43-tools: Use HTTPS home page. 
* gnu/packages/firmware.scm (b43-tools)[home-page]: Use HTTPS.
 2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 315c89f5ba
gnu: b43-tools: Update phase style. 
* gnu/packages/firmware.scm (b43-tools)[arguments]: Substitute INVOKE
for SYSTEM* and FOR-EACH for EVERY, and end phases with #t.
 2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice bb5c358204
gnu: b43-tools: Update to 0.0.0-1.27892ef. 
* gnu/packages/firmware.scm (b43-tools): Update to 0.0.0-1.27892ef.
[version]: Use our standard versioning scheme.
 2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 12adfdf0b6
gnu: Update (gnu packages python-web) phase styles. 
* gnu/packages/python-web.scm (python-openid, python-terminado)
(python-geventhttpclient, python-cachecontrol, python-webencodings)
(python-s3transfer)[arguments]: Substitute INVOKE for SYSTEM* and end
phases with #t.
 2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 6a192184ec
gnu: python-flask-script: Update to 2.0.6. 
* gnu/packages/python-web.scm (python-flask-script): Update to 2.0.6.
 2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice 05075433a2
gnu: python-htmlmin: Update to 0.1.12. 
* gnu/packages/python-web.scm (python-htmlmin): Update to 0.1.12.
 2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice bda82eff18
gnu: python-s3transfer: Update to 0.1.13. 
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.1.13.
 2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice e46dd02d99
gnu: python-webtest: Update to 2.0.29. 
* gnu/packages/python-web.scm (python-webtest): Update to 2.0.29.
 2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice 6f21aca728
gnu: python-ndg-httpsclient: Update to 0.4.4. 
* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.4.4.
 2018-03-02 15:52:51 +01:00
Tobias Geerinckx-Rice 3c5658c596
gnu: python-cssutils: Update to 1.0.2. 
* gnu/packages/python-web.scm (python-cssutils): Update to 1.0.2.
 2018-03-02 15:52:51 +01:00
Tobias Geerinckx-Rice 1a6fb8dac1
gnu: python-flask-babel: Update to 0.11.2. 
* gnu/packages/python-web.scm (python-flask-babel): Update to 0.11.2.
 2018-03-02 15:52:51 +01:00
Ludovic Courtès 424cea8083
guix system: Check for the lack of modules in the initrd. 
* guix/scripts/system.scm (check-mapped-devices): Take an OS instead of
a list of <mapped-device>.  Pass #:needed-for-boot? and #:initrd-modules
to CHECK.
(check-initrd-modules): New procedure.
(perform-action): Move 'check-mapped-devices' call first.  Add call to
'check-initrd-modules'.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): New
procedure.
(check-luks-device): Add #:initrd-modules and #:needed-for-boot?.  Use
them to call 'check-device-initrd-modules'.
 2018-03-02 13:53:15 +01:00
Ludovic Courtès bc499b113a
system: Add 'initrd-modules' field. 
* gnu/system.scm (<operating-system>)[initrd-modules]: New field.
(operating-system-initrd-file): Pass #:linux-modules to 'make-initrd'.
* gnu/system/linux-initrd.scm (default-initrd-modules): New procedure.
(%base-initrd-modules): New macro.
(base-initrd): Add #:linux-modules and honor it.
* gnu/system/install.scm (embedded-installation-os): Use
'initrd-modules' instead of 'initrd'.
* gnu/tests/install.scm (%raid-root-os): Likewise.
* doc/guix.texi (operating-system Reference): Add 'initrd-modules'.
(Initial RAM Disk): Document it.  Adjust example to not use
 #:extra-modules.
 2018-03-02 13:53:10 +01:00
Ludovic Courtès 615a89e310
linux-initrd: Separate file system module logic. 
* gnu/system/linux-initrd.scm (vhash, lookup-procedure): New macros.
(file-system-type-modules, file-system-modules): New procedures.
(base-initrd)[cifs-modules, virtio-9p-modules]: Remove.
[file-system-type-predicate]: Remove.
Use 'file-system-modules' instead of 'find' +
'file-system-type-predicate'.
 2018-03-02 13:46:45 +01:00
Ludovic Courtès 8661ad2743
linux-modules: Add 'device-module-aliases' and related procedures. 
* gnu/build/linux-modules.scm (readlink*, stat->device-major)
(stat->device-minor): New procedures.
(%not-slash): New variable.
(read-uevent, device-module-aliases, read-module-aliases)
(current-alias-file, known-module-aliases, matching-modules): New
procedures.
 2018-03-02 13:46:33 +01:00
Mark H Weaver 99654a1685
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
 2018-03-02 01:31:30 -05:00
Mark H Weaver 8863f2f051
gnu: icecat: Update to 52.6.0-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1.
[source]: Remove patches that are no longer needed.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1414945.patch,
gnu/packages/patches/icecat-bug-1415133.patch,
gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-03-02 01:31:19 -05:00
Leo Famulari 703a8b7dc5
gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.8.
 2018-03-01 20:01:48 -05:00
Leo Famulari bb17b2be49
gnu: postgresql: Update to 10.3 [fixes CVE-2018-1058]. 
* gnu/packages/databases.scm (postgresql): Update to 10.3.
 2018-03-01 20:01:48 -05:00
Leo Famulari e9802319f7
gnu: memcached: Update to 1.5.6. 
* gnu/packages/databases.scm (memcached): Update to 1.5.6.
 2018-03-01 20:00:12 -05:00
Mark H Weaver da525e714a
gnu: linux-libre: Update to 4.15.7. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.7.
(%linux-libre-hash): Update hash.
 2018-03-01 17:59:21 -05:00
Mark H Weaver 433765e599
gnu: linux-libre@4.14: Update to 4.14.23. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.23.
(%linux-libre-4.14-hash): Update hash.
 2018-03-01 17:58:35 -05:00
Mark H Weaver 8b1f76c443
gnu: linux-libre@4.9: Update to 4.9.85. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.85.
 2018-03-01 17:58:04 -05:00
Mark H Weaver 5026696033
gnu: linux-libre@4.4: Update to 4.4.119. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.119.
 2018-03-01 17:57:22 -05:00
Julien Lepiller 8147d7c675
gnu: php: Fix test failure. 
* gnu/packages/php.scm (php)[inputs]: Use gd-for-php.
(gd-for-php): New private variable.
* gnu/packages/patches/gd-CVE-2018-5711.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-03-01 22:25:28 +01:00
Tobias Geerinckx-Rice 738aa0ca1d
gnu: sdcc: Fix typo in description. 
* gnu/packages/sdcc.scm (sdcc)[description]: Fix (upstream) typo.  Add
hyphens.
 2018-03-01 22:21:02 +01:00
Tobias Geerinckx-Rice 1ff14bf2cd
gnu: sdcc: Update to 3.7.0. 
* gnu/packages/sdcc.scm (sdcc): Update to 3.7.0.
 2018-03-01 22:21:02 +01:00
Tobias Geerinckx-Rice bb47da4a6a
gnu: php: Update to 7.2.3. 
* gnu/packages/php.scm (php): Update to 7.2.3.
 2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice a9c0a133c0
gnu: python-stem: Update to 1.6.0. 
* gnu/packages/python.scm (python-stem): Update to 1.6.0.
[arguments]: Add ‘fix-test-environment’ phase.
 2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice 68e7632db0
gnu: onionshare: Update phase style. 
* gnu/packages/tor.scm (onionshare)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
 2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice fbb0164a5f
gnu: privoxy: Update phase style. 
* gnu/packages/tor.scm (privoxy)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
 2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice 66b89ee28e
gnu: python-stem: Update phase style. 
* gnu/packages/python.scm (python-stem)[arguments]: Substitute INVOKE
for SYSTEM* and end phase with #t.
 2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 57c734a628
gnu: liblo: Update to 0.29. 
* gnu/packages/audio.scm (liblo): Update to 0.29.
 2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 4972f9cc0a
gnu: nagios: Update to 4.3.4. 
* gnu/packages/monitoring.scm (nagios): Update to 4.3.4.
 2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 4f5452ab3a
gnu: libftdi: Use HTTPS home page. 
* gnu/packages/libftdi.scm (libftdi)[home-page]: Use HTTPS.
 2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 7314a5475e
gnu: dbacl: Use HTTPS home page. 
* gnu/packages/textutils.scm (dbacl)[home-page]: Use HTTPS.
 2018-03-01 22:20:59 +01:00
Tobias Geerinckx-Rice db317b38dc
gnu: dbacl: Update phase style. 
* gnu/packages/textutils.scm (dbacl)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
 2018-03-01 22:20:59 +01:00
Ricardo Wurmus b672a81607
gnu: Graft glibc to allow execution on Linux 2.6.32. 
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc-2.26-patched): New variable.
 2018-03-01 21:32:36 +01:00
Ricardo Wurmus b79e1fbe96
gnu: r-httpuv: Update to 1.3.6.1. 
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.1.
 2018-03-01 21:28:54 +01:00
Ricardo Wurmus bfae3f7121
gnu: r-lubridate: Update to 1.7.3. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.3.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus eaf0905970
gnu: r-tidyselect: Update to 0.2.4. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.4.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 35d12b05f0
gnu: r-rmarkdown: Update to 1.9. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus dafd13d5b2
gnu: r-rcpparmadillo: Update to 0.8.400.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 36e1202b2c
gnu: r-yaml: Update to 2.1.17. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus e3ddb56329
gnu: r-gdtools: Update to 0.1.7. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7.
[inputs]: Add zlib.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus e24ccf46f1
gnu: r-rpart: Update to 4.1-13. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 744e06e717
gnu: r-mass: Update to 7.3-49. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 29c9c9c2c1
gnu: r-rmysql: Update to 0.10.14. 
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 5e38673455
gnu: r-pillar: Update to 1.2.1. 
* gnu/packages/cran.scm (r-pillar): Update to 1.2.1.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 9d6f392529
gnu: r-truncnorm: Update to 1.0-8. 
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-8.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 9aaf2813e2
gnu: r-scran: Update to 1.6.8. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 6a0e13906b
gnu: r-wgcna: Update to 1.63. 
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 61cbd49b30
gnu: r-topgo: Update to 2.30.1. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 535014ce60
gnu: r-genomicranges: Update to 1.30.3. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus eb8971b742
gnu: r-limma: Update to 3.34.9. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 22d96920d3
gnu: r-edger: Update to 3.20.9. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 99e4b11d81
gnu: r-shortread: Update to 1.36.1. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus b180893289
gnu: r-dexseq: Update to 1.24.3. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
 2018-03-01 21:28:52 +01:00
Efraim Flashner 360ea2bbd5
gnu: efl: Use separate "include" output. 
* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
 2018-03-01 22:19:37 +02:00
Efraim Flashner 40a7997e63
gnu: efl: Update to 1.20.7. 
* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.
 2018-03-01 22:18:58 +02:00
Ricardo Wurmus 643817e445
gnu: Add patchmatrix. 
* gnu/packages/music.scm (patchmatrix): New variable.
 2018-03-01 21:12:59 +01:00
Ricardo Wurmus 1debc5b9d2
gnu: ghc-uuid: Fix build. 
* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer
version of QuickCheck.
 2018-03-01 21:11:43 +01:00
Christopher Lemmer Webber 04e7b1e7f9
gnu: golly: Fix source url. 
* gnu/packages/games.scm (golly): Fix source url.
 2018-03-01 11:19:56 -06:00
Marius Bakke 86990eeda2
Merge branch 'master' into staging 2018-03-01 18:04:12 +01:00
Marius Bakke 52fb59ef25
gnu: imagemagick: Update to 6.9.9-36. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.
 2018-03-01 17:40:49 +01:00
Marius Bakke fe29681717
gnu: libe-book: Update to 0.1.3. 
* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3.
[propagated-inputs]: Add LIBLANGTAG.
 2018-03-01 17:40:49 +01:00
Marius Bakke 814bc35d55
gnu: libabw: Update to 0.1.2. 
* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2.
 2018-03-01 17:40:48 +01:00
Marius Bakke c7cc1fcbe0
gnu: libpagemaker: Update to 0.0.4. 
* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4.
[source](uri): Use HTTPS.
 2018-03-01 17:40:48 +01:00
Marius Bakke 9ed31fca81
gnu: libmspub: Update to 0.1.4. 
* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4.
[source](uri): Use HTTPS.
 2018-03-01 17:40:48 +01:00
Marius Bakke 789445a10a
gnu: xorgproto: Update to 2018.4. 
* gnu/packages/xorg.scm (xorgproto): Update to 2018.4.
 2018-03-01 17:40:48 +01:00
Ludovic Courtès 21b5fc253e
gnu: cuirass: Update to aa4c778. 
* gnu/packages/ci.scm (cuirass): Update to aa4c778.
 2018-03-01 17:38:55 +01:00
Rene 35e2d0cfae
gnu: nautilus: Use meson-build-system, update to 3.26.2. 
* gnu/packages/gnome.scm (nautilus): Update to 3.26.2.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils and gtk+:bin.
[inputs]: Add libselinux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-01 14:00:21 +01:00
Leo Famulari acb59d99db
gnu: Fix Borg crashes with Python msgpack > 0.5 
The Python msgpack library changed its name, but borg (and possibly
other packages) still uses the old name.

Fixes <https://bugs.gnu.org/30662>.

* gnu/packages/python.scm (python-msgpack-transitional): New variable.
* gnu/packages/backup.scm (borg)[inputs]: Use it.
 2018-02-28 23:43:23 -05:00
Ricardo Wurmus 2adfe819f0
gnu: Remove duplicate definition of emacs-esxml. 
* gnu/packages/emacs.scm (emacs-esxml): Remove.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus c1d2236569
gnu: Remove emacs-nov. 
The package already exists with the name "emacs-nov-el".

* gnu/packages/emacs.scm (emacs-nov): Remove.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus 201084ac1f
gnu: java-bouncycastle-bcpkix: Use invoke. 
* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus 9be4b9fa58
gnu: java-bouncycastle-bcprov: Use invoke. 
* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus 1b6bc51675
gnu: java-lz4: Use invoke. 
* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus ec32bc9860
gnu: antlr3-3.1: Remove version from package name. 
* gnu/packages/java.scm (antlr3-3.1)[name]: Remove.
[arguments]: Adjust accordingly.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus 13f38d31a4
gnu: antlr3-3.1: Use invoke. 
* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus e85c1bf6cd
gnu: java-jansi-native: Simplify. 
* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove
useless "mkdir-p".
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus 3d6925ef51
gnu: java-jansi-native: Fix description. 
* gnu/packages/java.scm (java-jansi-native)[description]: Replace placeholder
text with an actual description.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus 6338ea9a88
gnu: java-hawtjni: Simplify build phases. 
* gnu/packages/java.scm (java-hawtjni)[arguments]: Use "invoke" instead of
"system*"; use "install-file" instead of "mkdir-p" and "copy-file".
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus 080d0b605a
gnu: java-commons-jexl-2: Use invoke. 
* gnu/packages/java.scm (java-commons-jexl-2)[arguments]: Use invoke.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus 8c7d32e07c
gnu: java-jnacl: Do not prefix jar with "java-". 
* gnu/packages/java.scm (java-jnacl)[arguments]: Rename jar to "jnacl.jar".
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus 3e87923a67
gnu: java-jnacl: Update to 0.1.0-2.094e819. 
* gnu/packages/java.scm (java-jnacl): Update to 0.1.0-2.094e819.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus 8333c206a9
gnu: java-jnacl: Simplify build phase. 
* gnu/packages/java.scm (java-jnacl)[arguments]: Simplify "fix-tests" phase.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus e158642816
gnu: java-jnacl: Correct license. 
* gnu/packages/java.scm (java-jnacl)[license]: Change to BSD-2.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus 602f54f436
gnu: java-jnacl: Use invoke. 
* gnu/packages/java.scm (java-jnacl)[arguments]: Use "invoke".
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus f201b18ed7
gnu: Add java-ecj-3.5. 
* gnu/packages/java.scm (java-ecj-3.5): New variable.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus c1cb857645
gnu: Add java-ecj-3. 
* gnu/packages/java.scm (java-ecj-3): New variable.
 2018-02-28 23:05:05 +01:00
Tobias Geerinckx-Rice 9d43579f2d
gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461]. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 4321aeb6d3
gnu: html-xml-utils: Update to 7.6. 
* gnu/packages/xml.scm (html-xml-utils): Update to 7.6.
 2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 0828bd82bd
gnu: libftdi: Update to 1.4. 
* gnu/packages/libftdi.scm (libftdi): Update to 1.4.
 2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 30bbb86ae3
gnu: git-remote-gcrypt: Update to 1.0.2. 
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.2.
 2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice aa08ab38cd
gnu: dropbear: Update to 2018.76. 
* gnu/packages/ssh.scm (dropbear): Update to 2018.76.
 2018-02-28 22:58:23 +01:00
Konrad Hinsen 649eb8b567
gnu: Add sala. 
* gnu/packages/password-utils.scm (sala): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-28 22:47:48 +01:00
Ludovic Courtès 3c14e7e6bb
linux-modules: Use 'load-linux-module/fd'. 
This should be more efficient than loading the whole thing in user space.

* gnu/build/linux-modules.scm (load-linux-module*): Use
'load-linux-module/fd' instead of 'load-linux-module'.  Remove 'slurp'.
 2018-02-28 22:47:48 +01:00
Ludovic Courtès 4c853b7c11
gnu: guile-static-stripped: Add 'finit_module' wrapper. 
* gnu/packages/patches/guile-linux-syscalls.patch: Add
'load-linux-module/fd' procedure.
 2018-02-28 22:47:48 +01:00
Ludovic Courtès 63e48300d1
gnu: guile-static-stripped: Remove dependency on bash-minimal. 
Previously guile-static-stripped, which is embedded in the initrd, would
depend on 'bash-minimal' and 'glibc'; the closure size was 77 MiB.  Now
the closure size is down to 45.7 MiB.

Reported by Danny Milosavljevic <dannym@scratchpost.org> in
<https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00505.html>.

* gnu/packages/make-bootstrap.scm (%guile-static): Remove the
'pre-configure' phase.
(%guile-static-stripped)[arguments]: Add #:allowed-references.
 2018-02-28 22:47:48 +01:00
Efraim Flashner bcc6551083
gnu: ccl: Patch absolute file-name. 
* gnu/packages/lisp.scm (ccl)[arguments]: In 'pre-build add substitution
for /bin/pwd.
 2018-02-28 22:11:21 +02:00
Efraim Flashner da1b30bd93
gnu: keepassxc: Enable various plugins. 
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add
configure-flags to enable favicons, browser integration and ssh-agent.
[inputs]: Add curl, libsodium.
 2018-02-28 22:11:21 +02:00
Efraim Flashner 3374dcc78c
gnu: keepassxc: Update to 2.3.0. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.0.
 2018-02-28 22:11:17 +02:00
Marius Bakke 53453d7acc
gnu: wavpack: Fix CVE-2018-6767. 
* gnu/packages/patches/wavpack-CVE-2018-6767.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/audio.scm (wavpack)[source](patches): Add it.
 2018-02-28 20:29:46 +01:00
Marius Bakke 6b3ee23b7a
gnu: ldb: Update to 1.3.2. 
* gnu/packages/samba.scm (ldb): Update to 1.3.2.
 2018-02-28 20:17:31 +01:00
Marius Bakke 954b677195
gnu: p11-kit: Update to 0.23.10. 
* gnu/packages/tls.scm (p11-kit): Update to 0.23.10.
 2018-02-28 20:13:41 +01:00
Marius Bakke f03ec1e595
gnu: feh: Update to 2.24. 
* gnu/packages/image-viewers.scm (feh): Update to 2.24.
 2018-02-28 20:01:03 +01:00
Alex Vong 6f45e45d4d
gnu: Add youtube-viewer. 
* gnu/packages/video.scm (youtube-viewer): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-28 16:59:55 +01:00
Alex Vong b5bbcda3ee
gnu: Add perl-gtk2. 
* gnu/packages/gtk.scm (perl-gtk2): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-28 16:59:55 +01:00
Alex Vong ee6911c7c0
gnu: Add perl-pango. 
* gnu/packages/gtk.scm (perl-pango): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-28 16:59:55 +01:00
Alex Vong 451f6e30eb
gnu: Add perl-glib. 
* gnu/packages/glib.scm (perl-glib): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-28 16:57:33 +01:00
Alex Vong 4e028d7ad2
gnu: Add perl-cairo. 
* gnu/packages/gtk.scm (perl-cairo): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-28 16:57:33 +01:00
Marius Bakke b0a2c9cbe9
gnu: python-webencodings: Update to 0.5.1. 
* gnu/packages/python-web.scm (python-webencodings): Update to 0.5.1.
 2018-02-28 16:02:55 +01:00
Marius Bakke 4ef80b2f58
gnu: python-html5lib: Update to 1.0.1. 
* gnu/packages/python-web.scm (python-html5lib): Update to 1.0.1.
 2018-02-28 16:01:43 +01:00
Marius Bakke a846f29dff
gnu: python-netifaces: Update to 0.10.6. 
* gnu/packages/python.scm (python-netifaces): Update to 0.10.6.
[source](uri): Use PYPI-URI.
[home-page]: Update.
 2018-02-28 15:40:44 +01:00
Marius Bakke fb2477f6d2
gnu: python-psutil: Update to 5.4.3. 
* gnu/packages/python.scm (python-psutil): Update to 5.4.3.
[properties]: Declare python2 variant.
(python2-psutil): Propagate PYTHON2-ENUM34.
 2018-02-28 14:17:55 +01:00
Marius Bakke 836de07a47
gnu: python-wrapt: Update to 1.10.11. 
* gnu/packages/python.scm (python-wrapt): Update to 1.10.11.
 2018-02-28 13:59:03 +01:00
Marius Bakke f8a4547c29
gnu: python-oslo.log: Update to 3.36.0. 
* gnu/packages/openstack.scm (python-oslo.log): Update to 3.36.0.
[source](uri): Use PYPI-URI.
[arguments]: Remove.
[propagated-inputs]: Add PYTHON-DATEUTIL, PYTHON-MONOTONIC, PYTHON-PBR and
PYTHON-PYINOTIFY.
[native-inputs]: Remove PYTHON-BABEL, PYTHON-ISO8601 and PYTHON-PBR.  Add
PYTHON-SUBUNIT, PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
 2018-02-28 13:59:03 +01:00
Marius Bakke db3e631db8
gnu: python-monotonic: Update to 1.4. 
* gnu/packages/time.scm (python-monotonic): Update to 1.4.
[source]: Use PYPI-URI.
[arguments]: Explicitly disable tests.
 2018-02-28 13:59:03 +01:00
Marius Bakke 2441239842
gnu: python-msgpack: Run the tests. 
* gnu/packages/python.scm (python-msgpack)[arguments]: Add #:modules.  Replace
CHECK-PHASE with pytest invocation.
[native-inputs]: Add PYTHON-PYTEST.
 2018-02-28 13:59:03 +01:00
Marius Bakke 0075644662
gnu: python-msgpack: Update to 0.5.6. 
* gnu/packages/python.scm (python-msgpack): Update to 0.5.6.
[source, home-page]: Adjust to msgpack-python->msgpack rename.
 2018-02-28 13:59:02 +01:00
Marius Bakke caf3713ad5
gnu: python-oslo.serialization: Update to 2.24.0. 
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.24.0.
[arguments]: Remove field.
[propagated-inputs]: Remove PYTHON-ISO8601 and PYTHON-SIMPLEJSON.  Add
PYTHON-MSGPACK.
[native-inputs]: Remove PYTHON-BABEL.
[properties]: New field.
(python2-oslo.serialization)[native-inputs]: Add PYTHON2-IPADDRESS.
 2018-02-28 13:59:02 +01:00
Marius Bakke 32bb0c617b
gnu: python-oslo.context: Update to 2.20.0. 
* gnu/packages/openstack.scm (python-oslo.context): Update to 2.20.0.
[propagated-inputs]: Add PYTHON-DEBTCOLLECTOR and PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR, PYTHON-COVERAGE, PYTHON-MOCK,
PYTHON-OS-CLIENT-CONFIG, PYTHON-OSLOSPHINX and PYTHON-SPHINX.  Add
PYTHON-FIXTURES.
 2018-02-28 13:59:02 +01:00
Marius Bakke 24f4400aa6
gnu: Add python-pyinotify. 
* gnu/packages/python.scm (python-pyinotify, python2-pyinotify): New
variables.
 2018-02-28 13:59:02 +01:00
Marius Bakke b51fbd6d6e
gnu: python-oslo.utils: Update to 3.35.0. 
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.35.0.
[source](snippet): Remove.
[propagated-inputs]: Add PYTHON-PYPARSING.
[native-inputs]: Add PYTHON-DDT, PYTHON-FIXTURES, PYTHON-TESTREPOSITORY and
PYTHON-TESTTOOLS.  Remove PYTHON-MOX3.
 2018-02-28 13:59:02 +01:00
Marius Bakke 9e4546a2be
gnu: python-oslo.config: Update to 5.2.0. 
* gnu/packages/openstack.scm (python-oslo.config): Update to 5.2.0.
[source](uri): Use PYPI-URI.
[arguments]: Remove field.
[propagated-inputs]: Add PYTHON-DEBTCOLLECTOR, PYTHON-OSLO.I18N, PYTHON-PBR,
PYTHON-RFC3986 and PYTHON-PYYAML.
[native-inputs]: Remove PYTHON-PBR and PYTHON-I18N.  Add PYTHON-BANDIT,
PYTHON-COVERAGE, PYTHON-OPENSTACKDOCSTHEME, PYTHON-RENO, PYTHON-SPHINX-1.6,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
 2018-02-28 13:59:02 +01:00
Marius Bakke a2803e206b
gnu: python-debtcollector: Update to 1.19.0. 
* gnu/packages/openstack.scm (python-debtcollector): Update to 1.19.0.
[arguments]: Remove field.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR and PYTHON-BABEL.  Add PYTHON-SUBUNIT,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
[properties]: Declare python2 variant.
(python2-debtcollector)[propaged-inputs]: Add PYTHON-FUNCSIGS.
 2018-02-28 13:59:02 +01:00
Marius Bakke c822e880fe
gnu: python-oslo.i18n: Update to 3.19.0. 
* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.19.0.
[arguments]: Remove field.
 2018-02-28 13:59:01 +01:00
Marius Bakke 231bd07e8d
gnu: python-bandit: Update to 1.4.0. 
* gnu/packages/openstack.scm (python-bandit): Update to 1.4.0.
[source](uri): Use PYPI-URI.
[arguments]: Run CHECK-PHASE after INSTALL-PHASE.
[propagated-inputs]: Remove PYTHON-APPDIRS.  Add PYTHON-GITPYTHON.
[native-inputs]: Remove PYTHON-PBR.  Add PYTHON-BEAUTIFULSOUP4,
PYTHON-OSLOTEST and PYTHON-SUBUNIT.
 2018-02-28 13:59:01 +01:00
Marius Bakke 8e6177204e
gnu: Add python-gitpython. 
* gnu/packages/version-control.scm (python-gitpython, python2-gitpython): New
public variables.
 2018-02-28 13:59:01 +01:00
Marius Bakke ea4be20af0
gnu: Add python-gitdb. 
* gnu/packages/version-control.scm (python-gitdb, python2-gitdb): New public
variables.
 2018-02-28 13:59:01 +01:00
Marius Bakke 1cccdca231
gnu: python-stevedore: Update to 1.28.0. 
* gnu/packages/openstack.scm (python-stevedore): Update to 1.28.0.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR, PYTHON-DISCOVER, PYTHON-DOCUTILS,
PYTHON-OSLOSPHINX and PYTHON-OSLOTEST.  Replace PYTHON-SPHINX with
PYTHON-SPHINX-1.6.
 2018-02-28 13:59:01 +01:00
Marius Bakke 3e3302acc5
gnu: Add python-rfc3986. 
* gnu/packages/python.scm (python-rfc3986, python2-rfc3986): New public
variables.
 2018-02-28 13:59:01 +01:00
Marius Bakke 79d9effa51
gnu: python2-stevedore: Enable tests. 
* gnu/packages/openstack.scm (python-stevedore)[properties]: Remove.
(python2-stevedore)[arguments]: Remove.
 2018-02-28 13:59:00 +01:00
Marius Bakke 8fa28808a6
gnu: python-oslo.context: Enable tests. 
* gnu/packages/openstack.scm (python-oslo.context)[arguments]: Remove.
 2018-02-28 13:59:00 +01:00
Marius Bakke 39033c8f57
gnu: python2-bandit: Enable tests. 
* gnu/packages/openstack.scm (python-bandit)[properties]: Remove.
(python2-bandit): Don't use STRIP-PYTHON2-VARIANT.
 2018-02-28 13:59:00 +01:00
Marius Bakke 0ab4c39285
gnu: python2-swiftclient: Enable tests. 
* gnu/packages/openstack.scm (python-swiftclient)[properties]: Declare python2
variant.
(python2-swiftclient): Use STRIP-PYTHON2-VARIANT.
[propagated-inputs]: Remove PYTHON2-REQUESTS.
[arguments]: Remove.
[native-inputs]: Delete.
 2018-02-28 13:59:00 +01:00
Marius Bakke b39667cdcb
gnu: python-mox3: Update to 0.24.0. 
* gnu/packages/openstack.scm (python-mox3): Update to 0.24.0.
[source](patches): New field.
[arguments]: Remove.
[native-inputs]: Add PYTHON-OPENSTACKDOCSTHEME and PYTHON-SUBUNIT.  Replace
PYTHON-SPHINX with PYTHON-SPHINX-1.6.  Move PYTHON-PBR and PYTHON-FIXTURES ...
[propagated-inputs]: ... here.  New field.
[description]: Don't mention explicit Python versions.
* gnu/packages/patches/python-mox3-python3.6-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-02-28 13:59:00 +01:00
Marius Bakke 7a565dc9ec
gnu: Add python-openstackdocstheme. 
* gnu/packages/openstack.scm (python-openstackdocstheme,
python2-openstackdocstheme): New public variables.
 2018-02-28 13:59:00 +01:00
Marius Bakke 3719d0edf2
gnu: python-sphinx@1.6: Add python2 variant. 
* gnu/packages/python.scm (python-sphinx-1.6)[properties]: Declare python2 variant.
(python2-sphinx-1.6): New public variable.
 2018-02-28 13:58:43 +01:00
Marius Bakke 9c77852e19
gnu: python-fixtures: Update to 3.0.0. 
* gnu/packages/check.scm (python-fixtures-bootstrap): Update to 3.0.0.
 2018-02-28 13:58:43 +01:00
Marius Bakke d2ae66b756
gnu: python-reno: Update to 2.7.0. 
* gnu/packages/openstack.scm (python-reno): Update to 2.7.0.
[propagated-inputs]: Remove PYTHON-BABEL.  Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR and PYTHON-OSLOTEST.  Add PYTHON-DOCUTILS
and PYTHON-SPHINX.
 2018-02-28 13:58:43 +01:00
Marius Bakke be3f88c29c
gnu: python-oslotest: Update to 3.2.0. 
* gnu/packages/openstack.scm (python-oslotest): Update to 3.2.0.
[source](uri): Use PYPI-URI.
[native-inputs]: Move PYTHON-OS-CLIENT-CONFIG, PYTHON-SIX, PYTHON-SUBUNIT,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS ...
[propagated-inputs]: ... here.
[properties]: Remove field.
(python2-oslotest)[arguments]: Remove.
 2018-02-28 13:58:43 +01:00
Marius Bakke ae565a9a6d
gnu: python-testscenarios: Update to 0.5.0. 
* gnu/packages/check.scm (python-testscenarios-bootstrap): Update to 0.5.0.
[source](uri): Use PYPI-URI.
[arguments]: Replace CHECK-PHASE.
[propagated-inputs]: Add PYTHON-PBR-MINIMAL.
(python-testscenarios)[propagated-inputs]: Add PYTHON-PBR.
 2018-02-28 13:58:43 +01:00
Marius Bakke 8b93f7e437
gnu: python-testtools: Update to 2.3.0. 
* gnu/packages/check.scm (python-testtools-bootstrap,
python2-testtools-bootstrap): New public variables.
(python-testtools): Inherit.
[arguments]: Remove old.  Replace CHECK-PHASE with custom command.
[propagated-inputs]: Add PYTHON-FIXTURES, PYTHON-PBR, PYTHON-SIX,
PYTHON-TRACEBACK2 and PYTHON-UNITTEST2.
[native-inputs]: Add PYTHON-TESTSCENARIOS-BOOTSTRAP.
(python-testscenarios-bootstrap, python2-testscenarios-bootstrap): New public
variables.
(python-testscenarios): Adjust accordingly.
[propagated-inputs]: Replace PYTHON-TESTTOOLS with PYTHON-TESTTOOLS-BOOTSTRAP.
(python-subunit-bootstrap, python2-subunit-bootstrap): New public variables.
(python-subunit): Inherit.
(python-fixtures-bootstrap)[native-inputs]: Replace PYTHON-TESTTOOLS with
PYTHON-TESTTOOLS-BOOTSTRAP.
(python-testrepository-bootstrap)[native-inputs]: Replace PYTHON-SUBUNIT and
PYTHON-TESTTOOLS with PYTHON-SUBUNIT-BOOTSTRAP and PYTHON-TESTTOOLS-BOOTSTRAP.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace
PYTHON-TESTSCENARIOS and PYTHON-TESTTOOLS with
PYTHON-TESTSCENARIOS-BOOTSTRAP and PYTHON-TESTTOOLS-BOOTSTRAP.
 2018-02-28 13:58:43 +01:00
Marius Bakke 881ed3f868
gnu: python-extras: Update to 1.0.0. 
* gnu/packages/python.scm (python-extras): Update to 1.0.0.
[source](uri): Use PYPI-URI.
 2018-02-28 13:58:43 +01:00
Marius Bakke bc69104a44
gnu: python-testresources: Update to 2.0.1. 
* gnu/packages/check.scm (python-testresources-bootstrap,
python2-testresources-bootstrap): New public variables.
(python-testresources): Adjust accordingly.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Add PYTHON-FIXTURES and PYTHON-TESTTOOLS.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace
PYTHON-TESTRESOURCES with PYTHON-TESTRESOURCES-BOOTSTRAP.
 2018-02-28 13:58:42 +01:00
Marius Bakke 151f32a74b
gnu: python-subunit: Update to 1.2.0. 
* gnu/packages/check.scm (python-subunit): Update to 1.2.0.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Remove PYTHON-MIMEPARSE.  Add PYTHON-TESTTOOLS.
[native-inputs]: Add PYTHON-FIXTURES and PYTHON-TESTSCENARIOS.
 2018-02-28 13:58:42 +01:00
Marius Bakke 335c9e3902
gnu: python-fixtures: Propagate python-pbr. 
* gnu/packages/check.scm (python-fixtures-bootstrap,
python2-fixtures-bootstrap, python-testrepository-bootstrap,
python2-testrepository-bootstrap): New public variables.
(python-fixtures): Adjust accordingly.
(python-testrepository): Likewise.
[native-inputs]: Remove PYTHON-PBR-MINIMAL.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace PYTHON-FIXTURES
and PYTHON-TESTREPOSITORY WITH PYTHON-FIXTURES-BOOTSTRAP and
PYTHON-TESTREPOSITORY-BOOTSTRAP.
 2018-02-28 13:58:42 +01:00
Efraim Flashner bd041e7fd3
gnu: dionysus: Update to 1.4.0. 
* gnu/packages/maths.scm (dionysus): Update to 1.4.0.
 2018-02-28 14:42:36 +02:00
Tobias Geerinckx-Rice 971d232b27
gnu: r-httpuv: Update to 1.3.6. 
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.
 2018-02-28 04:13:19 +01:00
Tobias Geerinckx-Rice 1143450c14
gnu: dblatex: Update to 0.3.10. 
* gnu/packages/docbook.scm (dblatex): Update to 0.3.10.
[source]: Remove patch.
* gnu/packages/patches/dblatex-remove-multirow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-28 04:13:19 +01:00
Tobias Geerinckx-Rice bf5e7189dc
gnu: perl-yaml-libyaml: Update to 0.69. 
* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.69.
 2018-02-28 04:13:18 +01:00
Tobias Geerinckx-Rice 3199acb2cf
gnu: perl-yaml: Update to 1.24. 
* gnu/packages/perl.scm (perl-yaml): Update to 1.24.
[source]: Update origin URI.
 2018-02-28 04:13:18 +01:00
Tobias Geerinckx-Rice 047cd2be07
gnu: perl-variable-magic: Update to 0.62. 
* gnu/packages/perl.scm (perl-variable-magic): Update to 0.62.
 2018-02-28 04:13:17 +01:00
Tobias Geerinckx-Rice 91b73dba9d
gnu: perl-throwable: Update to 0.200013. 
* gnu/packages/perl.scm (perl-throwable): Update to 0.200013.
 2018-02-28 04:13:17 +01:00
Tobias Geerinckx-Rice 1d4e6e1756
gnu: perl-text-diff: Update to 1.45. 
* gnu/packages/perl.scm (perl-text-diff): Update to 1.45.
 2018-02-28 04:13:16 +01:00
Tobias Geerinckx-Rice b0821f6b8d
gnu: perl-path-class: Update to 0.37. 
* gnu/packages/perl.scm (perl-path-class): Update to 0.37.
 2018-02-28 04:13:16 +01:00
Tobias Geerinckx-Rice 24397ab1a3
gnu: perl-list-moreutils-xs: Update to 0.428. 
* gnu/packages/perl.scm (perl-list-moreutils-xs): Update to 0.428.
 2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice 89badfbcc3
gnu: perl-import-into: Update to 1.002005. 
* gnu/packages/perl.scm (perl-import-into): Update to 1.002005.
[source]: Update origin URI.
 2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice a32f136547
gnu: perl-extutils-installpaths: Update to 0.011. 
* gnu/packages/perl.scm (perl-extutils-installpaths): Update to 0.011.
 2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice 63651b8057
gnu: perl-devel-globaldestruction: Update to 0.14. 
* gnu/packages/perl.scm (perl-devel-globaldestruction): Update to 0.14.
 2018-02-28 04:13:14 +01:00
Tobias Geerinckx-Rice 92a37fd224
gnu: perl-config-autoconf: Update to 0.315. 
* gnu/packages/perl.scm (perl-config-autoconf): Update to 0.315.
 2018-02-28 04:13:14 +01:00
Tobias Geerinckx-Rice e87ab2e895
gnu: perl-data-optlist: Update to 0.110. 
* gnu/packages/perl.scm (perl-data-optlist): Update to 0.110.
 2018-02-28 04:13:13 +01:00
Oleg Pykhalov e1cf4fd2d2
services: cgit: Add more configuration fields. 
* gnu/services/version-control.scm (cgit-service-type): Move to separate file.
* gnu/services/cgit.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add this.
* gnu/tests/version-control.scm: Add this.
* doc/guix.texi (Cgit Service): Document this.
 2018-02-28 04:40:56 +03:00
Ludovic Courtès 29d37e999c
gnu: make-bootstrap: Build grep without PCRE support. 
Partly fixes <https://bugs.gnu.org/24841>.
Reported by Chris Marusich <cmmarusich@gmail.com>.

This fixes cross-compilation of the statically-linked grep.

* gnu/packages/make-bootstrap.scm (%static-inputs): Add 'inputs' field
for grep.
 2018-02-28 00:33:48 +01:00
Tobias Geerinckx-Rice 7349fed591
gnu: perl-x11-xcb: Update to 0.17. 
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.17.
 2018-02-27 16:50:00 +01:00
Tobias Geerinckx-Rice fa964e96e6
gnu: perl-xml-sax-base: Update to 1.09. 
* gnu/packages/xml.scm (perl-xml-sax-base): Update to 1.09.
 2018-02-27 16:50:00 +01:00
Tobias Geerinckx-Rice 5cacd3144e
gnu: tig: Update to 2.3.3. 
* gnu/packages/version-control.scm (tig): Update to 2.3.3.
[arguments]: Substitute INVOKE for SYSTEM*.
 2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 4886d5b23c
gnu: spin2cpp: Update to 3.6.4. 
* gnu/packages/embedded.scm (spin2cpp): Update to 3.6.4.
 2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 7da5db8e45
gnu: godot: Update to 3.0.1. 
* gnu/packages/game-development.scm (godot): Update to 3.0.1.
[arguments]: End phases with #t and remove redundant MKDIR-P.
 2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 130acf72f7
gnu: love: Fix build with luajit@2.1.0-beta3. 
* gnu/packages/game-development.scm (love)[source]: Add snippet fixing Lua version detection.
 2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice d5d7d26df7
gnu: perl-gd: Update to 2.68. 
* gnu/packages/gd.scm (perl-gd): Update to 2.68.
[source]: Remove obsolete patch.
[native-inputs]: Remove perl-module-build.
[inputs]: Use canonical package names and order alphabetically.
[arguments]: Replace #:module-build-flags with fewer #:make-maker-flags,
enable #:tests?, and remove ‘clear-autogenerated-files’ phase.
* gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 2504fd3794
gnu: xfburn: Update to 0.5.5. 
* gnu/packages/xfce.scm (xfburn): Update to 0.5.5.
 2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice c26d74dde6
gnu: phonon: Update to 4.10.0. 
* gnu/packages/kde-frameworks.scm (phonon): Update to 4.10.0.
 2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 9e9a211f9d
gnu: soxr: Update to 0.1.3. 
* gnu/packages/audio.scm (soxr): Update to 0.1.3.
 2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 713b519eaa
gnu: fluidsynth: Update to 1.1.10. 
* gnu/packages/audio.scm (fluidsynth): Update to 1.1.10.
 2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 0c548d9875
gnu: youtube-dl: Update to 2018.02.26. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.02.26.
 2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 4f3506a48a
gnu: thermald: Update to 1.7.1. 
* gnu/packages/admin.scm (thermald): Update to 1.7.1.
[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
 2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 63f931cf82
gnu: gcab: Update to 1.1. 
* gnu/packages/package-management.scm (gcab): Update to 1.1.
[source]: Remove git dependency in a snippet.
 2018-02-27 16:49:57 +01:00
Kei Kebreau 36d48a536e
gnu: mbedtls-apache: Fix upstream typo. 
A typo was introduced in version 2.7.0 that caused the hiawatha package to
fail to build. See https://github.com/ARMmbed/mbedtls/pull/1362.

* gnu/packages/tls.scm (mbedtls-apache)[source]: Add snippet to fix typo.
 2018-02-27 10:33:59 -05:00
Ludovic Courtès 87b6305e72
gnu: polkit: Fix 'invoke' call. 
* gnu/packages/polkit.scm (polkit)[arguments] <'install>: Add 'apply'.
Fixes a regression introduced in 3c4bbb4c52.
 2018-02-27 09:22:24 +01:00
Chris Marusich a1df45e904
gnu: commencement: Add commentary regarding grafts. 
* gnu/packages/commencement.scm: Add comments that were originally
  included only in the Git commit message of
  f00b85ff8d.

Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
 2018-02-27 05:29:37 +01:00
Mark H Weaver 701cfb9b33
gnu: linux-libre: Update to 4.15.6. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.6.
(%linux-libre-hash): Update hash.
 2018-02-26 21:32:34 -05:00
Mark H Weaver cd2bcc9bda
gnu: linux-libre@4.14: Update to 4.14.22. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.22.
(%linux-libre-4.14-hash): Update hash.
 2018-02-26 21:31:46 -05:00
Mark H Weaver 5de50beda3
gnu: linux-libre@4.9: Update to 4.9.84. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.84.
 2018-02-26 21:31:07 -05:00
Mark H Weaver 26204b81f9
gnu: linux-libre@4.4: Update to 4.4.118. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.118.
 2018-02-26 21:30:16 -05:00
Nicolas Goaziou 7ad05d8526
gnu: emacs-org, emacs-org-contrib: Update to 20180226 
* gnu/packages/emacs.scm (emacs-org):
(emacs-org-contrib): Update to 20180226, aka Org 9.1.7.
 2018-02-27 00:32:06 +01:00
Leo Famulari fcbb8461a4
gnu: Add go@1.10. 
Building Go 1.10 with the Go 1.4 bootstrap, Thread Sanitizer from GCC 5
finds a data race during the the test suite of Go 1.10. With GCC 6, the
race doesn't seem to be present.

.##### ../misc/cgo/testsanitizers
--- FAIL: TestShared (0.03s)
    --- FAIL: TestShared/tsan_shared (2.54s)
        cshared_test.go:71: `/tmp/guix-build-go-1.10.drv-0/TestShared367937240/tsan_shared` exited with exit status 66
                ==================
                WARNING: ThreadSanitizer: data race (pid=28778)
                  Write of size 8 at 0x7ffff5495c30 by thread T1:
                    #0 pthread_attr_getstacksize <null> (tsan_shared+0x00000041be82)
                    #1 x_cgo_init <null> (libtsan_shared.so+0x00000008aeaf)
                    #2 runtime.rt0_go /tmp/guix-build-go-1.10.drv-0/go/src/runtime/asm_amd64.s:199 (libtsan_shared.so+0x000000081586)

                  Previous write of size 8 at 0x7ffff5495c30 by main thread:
                    #0 <null> <null> (0x000000000001)

                  Location is stack of thread T1.

                  Thread T1 (tid=28786, running) created by main thread at:
                    #0 pthread_create <null> (tsan_shared+0x00000040c794)
                    #1 _cgo_try_pthread_create <null> (libtsan_shared.so+0x00000008ad70)
                    #2 x_cgo_sys_thread_create <null> (libtsan_shared.so+0x00000008ab12)
                    #3 _rt0_amd64_lib /tmp/guix-build-go-1.10.drv-0/go/src/runtime/asm_amd64.s:56 (libtsan_shared.so+0x0000000813b6)

                SUMMARY: ThreadSanitizer: data race ??:0 __interceptor_pthread_attr_getstacksize

* gnu/packages/golang.scm (go-1.10): New variable.
(go-1.4)[native-inputs]: Use gcc:lib version 6.
 2018-02-26 17:34:14 -05:00
Leo Famulari 13d9794d8f
gnu: Add RawTherapee. 
* gnu/packages/photo.scm (rawtherapee): New variable.
 2018-02-26 17:05:46 -05:00
Leo Famulari bc806b0c12
gnu: Add libiptcdata. 
* gnu/packages/image.scm (libiptcdata): New variable.
 2018-02-26 17:05:46 -05:00
Roel Janssen 5815e3bc94
gnu: Add emacs-nov. 
* gnu/packages/emacs.scm (emacs-nov): New variable.
 2018-02-26 22:27:36 +01:00
Roel Janssen c74b8b41cf
gnu: Add emacs-esxml. 
* gnu/packages/emacs.scm (emacs-esxml): New variable.
 2018-02-26 22:27:31 +01:00
Marius Bakke 6d796220c4
gnu: ninja: Patch /bin/echo in the correct file. 
This is a follow-up to commit d0de4c40e2.

* gnu/packages/ninja.scm (ninja)[arguments]: Adjust substitution.
 2018-02-26 20:58:14 +01:00
Marius Bakke d0de4c40e2
gnu: ninja: Patch hard-coded /bin/echo reference. 
Solves a test failure on systems where open file limits are high enough for
this test to run.  See <https://bugs.gnu.org/30601>.

* gnu/packages/ninja.scm (ninja)[arguments]: Add substitution.
 2018-02-26 20:37:04 +01:00
Tobias Geerinckx-Rice d504de2655
gnu: assword: Update to 0.11. 
* gnu/packages/password-utils.scm (assword): Update to 0.11.
 2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice fc38e317cd
gnu: python-cffi: Update phase style. 
* gnu/packages/libffi.scm (python-cffi)[arguments]: Substitute INVOKE
for SYSTEM*, end phases with #t, and remove unneeded bits from the
‘install-doc’ phase.
 2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice b737530569
gnu: python-cffi: Update to 1.11.4. 
* gnu/packages/libffi.scm (python-cffi): Update to 1.11.4.
 2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice 4e501d0642
gnu: perl-scalar-list-utils: Update to 1.50. 
* gnu/packages/perl.scm (perl-scalar-list-utils): Update to 1.50.
 2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice 0ae079ec2a
gnu: Add nghttp2. 
* gnu/packages/web.scm (nghttp2): New public variable.
 2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 9de33cc726
gnu: ruby-ffi: Update to 1.9.22. 
* gnu/packages/libffi.scm (ruby-ffi): Update to 1.9.22.
 2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 4ff3484f1e
gnu: libpsl: Update to 0.20.0. 
* gnu/packages/web.scm (libpsl): Update to 0.20.0.
 2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 57e7d7486b
gnu: Use HTTPS for supported freedesktop.org home pages. 
* gnu/packages/fontutils.scm (fontconfig)[home-page]: Use HTTPS.
* gnu/packages/freedesktop.scm (python-pyxdg, accountsservice)
(modem-manager, telepathy-mission-control, telepathy-mission-control)
(colord-gtk, desktop-file-utils)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (libspectre)[home-page]: Likewise.
* gnu/packages/glib.scm (dbus, dbus-glib, telepathy-glib)[home-page]:
Likewise.
* gnu/packages/gnome.scm (shared-mime-info, hicolor-icon-theme)
(libxklavier, colord, upower)[home-page]: Likewise.
* gnu/packages/gstreamer.scm (orc, python-gst)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (sound-theme-freedesktop)[home-page]:
Likewise.
* gnu/packages/libreoffice.scm (libexttextcat)[home-page]: Likewise.
* gnu/packages/polkit.scm (polkit-gnome, polkit-gnome)[home-page]:
Likewise.
* gnu/packages/pulseaudio.scm (pavucontrol)[home-page]: Likewise.
* gnu/packages/python.scm (python-dbus)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (startup-notification)[home-page]: Likewise.
 2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 3c4bbb4c52
gnu: polkit: Update phase & snippet style. 
* gnu/packages/polkit.scm (polkit)[source]: End snippet with #t.
[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
 2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 73a3e98f01
gnu: perl-xml-libxslt: Update to 1.96. 
* gnu/packages/xml.scm (perl-xml-libxslt): Update to 1.96.
 2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 12505baed9
gnu: perl-net-smtp-ssl: Update to 1.04. 
* gnu/packages/web.scm (perl-net-smtp-ssl): Update to 1.04.
 2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 6f8d1f7274
gnu: perl-http-server-simple: Update to 0.52. 
* gnu/packages/web.scm (perl-http-server-simple): Update to 0.52.
 2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 24a300b1bd
gnu: dvdstyler: Remove hard-coded version string. 
* gnu/packages/cdrom.scm (dvdstyler)[arguments]: Remove a hard-coded
version string from the docbook-xsl search path.
 2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 74b977d725
gnu: libdvbpsi: Update to 1.3.2. 
* gnu/packages/video.scm (libdvbpsi): Update to 1.3.2.
 2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 383ad03e83
gnu: tinc: Update to 1.0.33. 
* gnu/packages/vpn.scm (tinc): Update to 1.0.33.
 2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 7ed1abfa81
gnu: gource: Update to 0.48. 
* gnu/packages/version-control.scm (gource): Update to 0.48.
 2018-02-26 20:13:08 +01:00