Commit Graph

9770 Commits (dda362714123d9f68255f165c449b13498c720c8)

Author SHA1 Message Date
Ben Woodcroft 5131e21064
gnu: r-rtracklayer: Update to 1.32.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
2016-07-28 21:45:14 +10:00
Ben Woodcroft 2a3e325f5e
gnu: r-genomeinfodb: Update to 1.8.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
2016-07-28 21:45:14 +10:00
Ben Woodcroft f2e791750b
gnu: r-s4vectors: Update to 0.10.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
2016-07-28 20:13:42 +10:00
Leo Famulari e335b82c4e
gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}].
* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
2016-07-28 02:08:49 -04:00
Tomáš Čech 46e4e84ffc
gnu: the-silver-searcher: Update to 0.32.0.
* gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0.
2016-07-28 08:05:04 +02:00
Leo Famulari 8e5d8b1880
gnu: imagemagick: Update to 6.9.5-3.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3.
2016-07-27 23:25:13 -04:00
Leo Famulari ff7172feae
gnu: mariadb: Update to 10.1.16.
* gnu/packages/databases.scm (mariadb): Update to 10.1.16.
2016-07-27 23:25:08 -04:00
Alex Griffin b111bdb667
gnu: calibre: Update to 2.63.0.
* gnu/packages/ebook.scm (calibre): Update to 2.63.0.
[inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.

* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.

Signed-off-by: Roel Janssen <roel@gnu.org>
2016-07-27 23:45:16 +02:00
Carlos Sánchez de La Lama cad7e6abaf
system: Source /etc/environment before $HOME/.guix-profile/etc/profile.
* gnu/system.scm (operating-system-etc-service) <profile>: Move sourcing
of /etc/environment before that of $HOME/.guix-profile/etc/profile.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-27 23:08:20 +02:00
Ben Woodcroft 9712ef8d42
gnu: krona-tools: Update to 2.7.
* gnu/packages/web.scm (krona-tools): Update to 2.7.
[arguments]: Delete 'build' phase.  Install new scripts.
2016-07-27 23:39:56 +10:00
Ben Woodcroft 12c8f210ee
gnu: diamond: Update to 0.8.16.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
2016-07-27 23:17:57 +10:00
Andreas Enge fd6830b3a6
gnu: guix: Update revision number in version.
This is a follow-up to commit 95af24a2f1.
Reported by Alex Kost <alezost@gmail.com>.
2016-07-27 15:16:17 +02:00
Alex Griffin 46bd451520
gnu: magit: Fix rebase commands that require perl.
* gnu/packages/emacs.scm (magit)[inputs]: Add 'perl'.
[arguments]: Adjust 'patch-exec-paths' phase to make some rebase
commands find 'perl'.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-07-27 11:15:45 +03:00
Tobias Geerinckx-Rice 82ee141bab
gnu: Add httping.
* gnu/packages/networking.scm (httping): New variable.
2016-07-27 03:59:47 +02:00
Tobias Geerinckx-Rice 42ff54d5fa
gnu: Add missing copyright symbol.
* gnu/packages/networking.scm: Add missing "©" to header comments.
2016-07-27 03:59:47 +02:00
ng0 ae83dcf6ba
gnu: gmime: Remove 'gpg' to 'gpg2' substitution.
* gnu/packages/mail.scm (gmime)[arguments]: Remove the substitution which
previously changed 'gpg' to 'gpg2' in 'patch-paths-in-tests' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-26 19:43:54 -04:00
Andreas Enge d3896fc4ce
gnu: dmd: Remove package, superseded by shepherd.
* gnu/packages/admin.scm (dmd): Remove variable.
2016-07-26 22:50:26 +02:00
Danny Milosavljevic 90c2ee889b
gnu: Add perl-db-file.
* gnu/packages/databases.scm (perl-db_file): New variable.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-07-26 22:43:48 +02:00
Alex Griffin 88a8ce87a4
gnu: icecat: Install icons.
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add
'install-icons' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-26 14:53:16 +02:00
Tobias Geerinckx-Rice 2b76f13507
gnu: Add haveged.
* gnu/packages/linux.scm (haveged): New variable.
2016-07-26 11:20:52 +02:00
Tobias Geerinckx-Rice af7aaaebab
gnu: Add perceptualdiff.
* gnu/packages/image.scm (perceptualdiff): New variable.
2016-07-26 11:20:27 +02:00
Mark H Weaver ca80985c6c
gnu: linux-libre@4.1: Update to 4.1.28.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.28.
2016-07-26 01:36:12 -04:00
Mark H Weaver de348a0bb7
gnu: linux-libre: Update to 4.7.
* gnu/packages/linux.scm (linux-libre): Update to 4.7.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: New files.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.
2016-07-26 00:46:40 -04:00
Andreas Enge 0e5f606159
gnu: calibre: Build with non-modular Qt.
* gnu/packages/ebook.scm (calibre)[native-inputs]: Replace QTBASE by QT.
[inputs]: Replace QTBASE by QT and PYTHON2-PYQT by PYTHON2-PYQT-5.5.

This essentially reverts commit 76806c54ed.

Reported by Roel Janssen <roel@gnu.org>.
2016-07-26 00:38:39 +02:00
Andreas Enge 4a8c35e143
gnu: pyqt: Add versions based on non-modular Qt 5.5.
* gnu/packages/qt.scm (python-pyqt-5.5, python2-pyqt-5.5): New variables.
2016-07-26 00:38:20 +02:00
Andreas Enge 95af24a2f1
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 97c8aef.
2016-07-25 22:53:27 +02:00
Andreas Enge 97c8aef15d
system: Add mapped devices for RAID.
* gnu/system/mapped-devices.scm (raid-device-mapping, open-raid-device,
close-raid-device): New variables.
* doc/guix.texi (Mapped Devices): Add documentation for RAID devices,
reorganize documentation for LUKS devices.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-07-25 22:22:21 +02:00
Alex Kost 090bdb9e91
gnu: emacs-solarized-theme: Remove unneeded dependencies.
* gnu/packages/emacs.scm (emacs-solarized-theme)[propagated-inputs]:
Remove 'emacs-f' and 'emacs-s'.
2016-07-25 17:18:53 +03:00
Alex Kost c48899eba2
gnu: emacs: Install site-start.el in non-versioned directory.
Reported by Ricardo Wurmus on #guix.

* gnu/packages/emacs.scm (emacs)[arguments]: Put "site-start.el" in
"/share/emacs/site-lisp" instead of "/share/emacs/<version>/site-lisp"
to let inherited package with another version find it.
2016-07-25 17:18:53 +03:00
Alex Kost 07f7cc03ce
gnu: Add guile-daemon.
* gnu/packages/guile.scm (guile-daemon): New variable.
2016-07-25 17:18:53 +03:00
Alex Kost bd9af61035
gnu: Add guile-xosd.
* gnu/packages/guile.scm (guile-xosd): New variable.
2016-07-25 17:18:53 +03:00
Alex Kost 6cfd1a687a
gnu: Add xdpyprobe.
* gnu/packages/xdisorg.scm (xdpyprobe): New variable.
2016-07-25 17:18:53 +03:00
Alex Kost 84b5d9075c
gnu: mkfontdir: Do not propagate 'mkfontscale'.
* gnu/packages/xorg.scm (mkfontdir)[propagated-inputs]: Move
'mkfontscale' to ...
[inputs]: ... here.
[arguments]: Add 'wrap-mkfontdir' phase.
2016-07-25 17:18:52 +03:00
Alex Kost e48e31bcc8
gnu: Add xfd.
* gnu/packages/xorg.scm (xfd): New variable.
2016-07-25 17:18:52 +03:00
Alex Kost f225ae7544
gnu: Add xfontsel.
* gnu/packages/xorg.scm (xfontsel): New variable.
2016-07-25 17:18:52 +03:00
Andy Patterson 1925a87926
gnu: sbcl: Update to 1.3.7.
* gnu/packages/lisp.scm (sbcl): Update to 1.3.7.
[arguments]: During the patch-unix-tool-paths phase, avoid running
substitute* on a utf-16-be encoded file.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-07-25 19:50:13 +08:00
Andy Patterson 54a43ff406
gnu: ecl: Wrap with PATH, CPATH, LIBRARY_PATH, and LD_LIBRARY_PATH.
* gnu/packages/lisp.scm (ecl)[arguments]: Add 'wrap' phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-07-25 10:48:49 +02:00
Andy Patterson 60474cd114
gnu: ecl: Enable tests.
* gnu/packages/lisp.scm (ecl): Enable tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-25 10:48:49 +02:00
Andy Patterson e0524511ec
gnu: ecl: Update to 16.1.2.
* gnu/packages/lisp.scm (ecl): Update to 16.1.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-25 10:48:49 +02:00
Efraim Flashner 45477c6a7d
gnu: gnupg@2.1: Use 'modify-phases'.
* gnu/packages/gnupg.scm (gnupg@2.1)[arguments]: Use 'modify-phases'
syntax.
2016-07-25 00:18:15 +03:00
Efraim Flashner 35d28c6013
gnu: hdup: Update source url.
* gnu/packages/backup.scm (hdup)[source]: Update url.
2016-07-25 00:15:30 +03:00
Leo Famulari 163708a664
gnu: gnupg-2.1: Install executable as 'gpg'.
* gnu/packages/gnupg.scm (gnupg-2.1)[arguments]: Add '--enable-gpg2-is-gpg'
to #:configure-flags.
2016-07-24 17:09:40 -04:00
Ludovic Courtès bc85b127df
gnu: gnupg@2.0: Add the 'gpg' and 'gpgv' commands.
* gnu/packages/gnupg.scm (gnupg-2.0)[arguments]: Add
'rename-v2-commands' phase.
2016-07-24 22:18:45 +02:00
Efraim Flashner 80c47cf8e4
gnu: gnupg@2.0: Fix typo.
* gnu/packages/gnupg.scm (gnupg@2.0)[arguments]: Fix typo that prevented
gnupg from building.

This is a follow up to 6b547d2295.
2016-07-24 22:02:46 +03:00
Efraim Flashner 04c828c4fb
gnu: exiv2: Update source url.
* gnu/packages/geeqie.scm (exiv2)[source]: Update url.
2016-07-24 21:17:04 +03:00
Ludovic Courtès 6b547d2295
doc: gnupg@2.0: Use 'modify-phases'.
* gnu/packages/gnupg.scm (gnupg-2.0)[arguments]: Use 'modify-phases'.
2016-07-24 19:54:15 +02:00
Andreas Enge a308c2339a
gnu: icecat: Disable parallel build.
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Disable parallel build.
2016-07-24 18:40:46 +02:00
Andreas Enge 238e5642d4
gnu: icecat: Update to 38.8.0-gnu2.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.8.0-gnu2.
2016-07-24 17:28:36 +02:00
Efraim Flashner d841a292b2
gnu: openssh: Fix CVE-2016-6210.
* gnu/packages/ssh.scm (openssh)[source]: Add patches
openssh-CVE-2016-6210-1.patch, openssh-CVE-2016-6210-2.patch,
openssh-CVE-2016-6210-3.patch.
* gnu/packages/patches/openssh-CVE-2016-6210-1.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-2.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register them.
2016-07-24 16:18:41 +03:00
Efraim Flashner df2c7563ff
gnu: pspp: Update to 0.10.2.
* gnu/packages/statistics.scm (pspp): Update to 0.10.2.
2016-07-24 15:43:35 +03:00
Efraim Flashner fe84bc9aba
gnu: python-iso8601: Update to 0.1.11.
* gnu/packages/python.scm (python-iso8601): Update to 0.1.11.
2016-07-24 15:43:34 +03:00
Efraim Flashner 2af56bfa1e
gnu: iniparser: Use 'modify-phases'.
* gnu/packages/samba.scm (iniparser)[arguments]: Use 'modify-phases'
syntax.
2016-07-24 15:43:34 +03:00
Efraim Flashner def8f501e6
gnu: iniparser: Update to 4.0.
* gnu/packages/samba.scm (iniparser): Update to 4.0.
[source]: Download from Github.
[arguments]: Define 'gcc' in Makefiles.
2016-07-24 15:43:33 +03:00
Efraim Flashner f0e8d85e17
gnu: python-waf: Update to 1.9.1.
* gnu/packages/python.scm (python-waf): Update to 1.9.1.
2016-07-24 15:43:33 +03:00
Efraim Flashner f0b8d83a77
gnu: mpv: Use packaged waf.
* gnu/packages/video.scm (mpv)[inputs]: Remove externally downloaded waf
package and use packaged python-waf.
2016-07-24 15:43:32 +03:00
Andreas Enge 8ebdf9afd6
gnu: wxwidgets: Update source URL.
* gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2): Update source URL.
2016-07-24 10:36:54 +02:00
Leo Famulari d5f335eedb
gnu: git: Update to 2.9.2.
* gnu/packages/version-control.scm (git): Update to 2.9.2.
(git-manpages)[source]: Update hash.
2016-07-24 03:49:10 -04:00
Ricardo Wurmus 6af691723e
gnu: icedtea-6: Narrow file to certificate block.
* gnu/packages/java.scm (icedtea-6)[arguments]: Extract certificate
  blocks from pem files before importing.
2016-07-24 09:41:57 +02:00
ng0 578aeea6cd
gnu: perl-io-socket-ssl: Add IDN support.
* gnu/packages/web.scm (perl-io-socket-ssl)[propagated-inputs]: Add perl-uri
for IDN support.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-07-24 09:36:42 +03:00
ng0 73020459b3
gnu: perl-io-socket-ssl: Update to 2.033.
* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.033.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-07-24 09:36:42 +03:00
Efraim Flashner 763a17ba62
gnu: parallel: Update to 20160722.
* gnu/packages/parallel.scm (parallel): Update to 20160722.
2016-07-24 09:36:42 +03:00
Efraim Flashner fad51a1837
gnu: hplip: Update to 3.16.7.
* gnu/packages/cups.scm (hplip): Update to 3.16.7.
2016-07-24 09:35:58 +03:00
Efraim Flashner 7531b1fc4d
gnu: ghc-memory: Update to 0.13.
* gnu/packages/haskell.scm (ghc-memory): Update to 0.13.
2016-07-24 09:35:58 +03:00
Alex Griffin 92c2f6055d
gnu: Add trash-cli.
* gnu/packages/shellutils.scm (trash-cli): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-23 20:34:31 -04:00
Andreas Enge 2a69d4df7d
gnu: youtube-dl: Update to 2016.07.22.
* gnu/packages/video.scm (youtube-dl): Update to 2016.07.22.
2016-07-24 00:11:15 +02:00
Efraim Flashner a4ea25d347
gnu: offlineimap: Update to 7.0.0.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.0.
[inputs]: Add python2-six.
[native-inputs]: Remove python2.
2016-07-24 00:30:02 +03:00
Andreas Enge a000f3c4a8
gnu: cook: Update source URL.
* gnu/packages/cook.scm (cook)[source]: Update URL.
2016-07-23 22:19:11 +02:00
Tobias Geerinckx-Rice 6a3987b1ae
gnu: fish: Update to 2.3.1.
* gnu/packages/fish.scm (fish): Update to 2.3.1.
[home-page, source]: Use 'https' in the URL.
2016-07-23 20:18:14 +02:00
Tobias Geerinckx-Rice 389eb3fab7
gnu: Add lrzip.
* gnu/packages/compression.scm (lrzip): New variable.
2016-07-23 20:18:14 +02:00
Ben Woodcroft e03a515304
gnu: fasttree: Update to 2.1.9.
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.9.
2016-07-23 15:15:12 +10:00
Alex Griffin 26ad4adb55
gnu: wesnoth: Update to 1.12.6.
* gnu/packages/games.scm (wesnoth): Update to 1.12.6.
2016-07-22 16:12:16 -04:00
Leo Famulari eddf9ae95e
gnu: opus: Update to 1.1.3.
* gnu/packages/xiph.scm (opus): Update to 1.1.3.
2016-07-22 14:02:13 -04:00
Leo Famulari 0f971a0475
gnu: Update URLs for sourceforge.net.
* gnu/packages/audio.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/lxde.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
2016-07-22 11:47:12 -04:00
Efraim Flashner 8ef843c711
gnu: aegis: Use 'modify-phases'.
* gnu/packages/version-control.scm (aegis)[arguments]: Use 'modify-phases'.
2016-07-22 18:24:22 +03:00
Efraim Flashner 2ce516d359
gnu: git: Use 'modify-phases'.
* gnu/packages/version-control.scm (git)[arguments]: Use 'modify-phases'.
2016-07-22 18:24:22 +03:00
Efraim Flashner bf3c57ff2d
gnu: cssc: Use 'modify-phases'.
* gnu/packages/version-control.scm (cssc)[arguments]: Use 'modify-phases'.
2016-07-22 18:24:22 +03:00
Efraim Flashner 7c5a145414
gnu: subversion: Use 'modify-phases'.
* gnu/packages/version-control.scm (subversion)[arguments]: Use
'modify-phases'.
2016-07-22 18:24:22 +03:00
Efraim Flashner ce84c924ac
gnu: subversion: Use https.
* gnu/packages/version-control.scm (subversion)[source]: Use https.
[home-page]: Use https.
2016-07-22 18:24:22 +03:00
Efraim Flashner aac42d7885
gnu: git-flow: Use 'modify-phases'.
* gnu/packages/version-control.scm (git-flow)[arguments]: Use
'modify-phases'.
2016-07-22 18:24:22 +03:00
Efraim Flashner 430e67a459
gnu: gnuplot: Update to upstream's re-release of 5.0.4.
* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the
version scheme of gnuplot to force an update.
2016-07-22 18:24:22 +03:00
Efraim Flashner 18d4d10f34
gnu: enlightenment: Update to 0.21.1.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.1.
2016-07-22 18:24:22 +03:00
Efraim Flashner 730c740e43
gnu: bazaar: Use 'modify-phases'.
* gnu/packages/version-control.scm (bazaar)[arguments]: Use
'modify-phases'.
2016-07-22 18:24:22 +03:00
Ricardo Wurmus f21403e2b6 gnu: icedtea-6: Generate keystore.
* gnu/packages/java.scm (icedtea-6)[arguments]: Add phase
"install-keystore".
[native-inputs]: Add nss-certs.
2016-07-22 17:10:25 +02:00
Ricardo Wurmus 9bc84dfea9 gnu: icedtea-6: Use modify-phases syntax.
* gnu/packages/java.scm (icedtea-6)[arguments]: Use modify-phases
  syntax.
2016-07-22 17:10:11 +02:00
Ricardo Wurmus 745ad37a78 gnu: nss-certs: Stop inheriting from nss package.
* gnu/packages/certs.scm (nss-certs): Stop inheriting from nss package.
2016-07-22 17:10:11 +02:00
Danny Milosavljevic c2f0dc6ed1
gnu: Add ptpython and ptpython2.
* gnu/packages/python.scm (ptpython, ptpython-2): New variables.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-07-22 15:06:05 +02:00
宋文武 782170c4f5
gnu: racket: Add more inputs.
* gnu/packages/scheme.scm (racket)[inputs]: Add glu, gmp, libpng, libx11,
mesa, mpfr, openssl and unixodbc.  Replace libjpeg-8 with libjpeg and
gtk+-2 with gtk+.
2016-07-22 19:09:20 +08:00
宋文武 e8c6811bf1
gnu: racket: Patch dynamically loaded libraries with absolute paths.
* gnu/packages/scheme.scm (racket)[arguments]: Patch 'ffi-lib' calls to
absolute paths in 'pre-configure' phase.  Remove 'wrap-programs' phase.
2016-07-22 19:09:11 +08:00
Daniel Pimentel 8d63dddac1
gnu: Add python-protobuf.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): New variables.

Co-authored-by: Leo Famulari <leo@famulari.name>
2016-07-22 02:22:49 -04:00
Leo Famulari d7cff656df
gnu: muparser: Update source URL.
* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location.
Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
2016-07-21 18:25:20 -04:00
Leo Famulari de67e92288
gnu: Update URLs for sourceforge.net.
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
2016-07-21 18:09:40 -04:00
Kei Kebreau a205d3f991
gnu: Add hexedit.
* gnu/packages/hexedit: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-07-21 14:06:05 -04:00
Tomáš Čech 24e964314e
services: Export *-service-type and *-configuration.
This allows users to use 'modify-services' and similar constructs for
all these service types.

* gnu/services/avahi.scm: export avahi-configuration.
* gnu/services/base.scm: export gpm-configuration and
rngd-configuration.
* gnu/services/databases.scm: export *-service-type and *-configuration.
* gnu/services/dbus.scm: export dbus-configuration.
* gnu/services/dict.scm: export dicod-service-type.
* gnu/services/lirc.scm: export lirc-configuration and
lirc-service-type.
* gnu/services/mail.scm: export dovecot-service-type.
* gnu/services/web.scm: export nginx-configuration and
nginx-service-type.
* gnu/services/xorg.scm: export screen-locker and screen-locker?.
* gnu/services/ssh.scm: export lsh-configuration and lsh-service-type.
* gnu/services/desktop.scm: export *-service, *-service-type
and *-configuration.
* gnu/services/networking.scm: export *-configuration
and *-service-type.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-07-21 18:53:27 +02:00
Efraim Flashner 427dda54f2
gnu: tesseract-ocr: Update to 3.04.01.
* gnu/packages/ocr.scm (tesseract-ocr): Update to 3.04.01.
[source]: Download from Github, add 'file-name' field, remove snippet.
[native-inputs]: Remove autoconf, automake, libtool.
[propagated-inputs]: Move leptonica ...
[inputs]: ... to here.
[arguments]: Remove 'autogen phase.
[home-page]: Move program's home-page to Github.
2016-07-21 17:18:42 +03:00
Efraim Flashner a9c64810cd
gnu: gnuplot: Update to 5.0.4.
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
2016-07-21 13:56:51 +03:00
Efraim Flashner 873966e3e9
gnu: dovecot: Update to 2.2.25.
* gnu/packages/mail.scm (dovecot): Update to 2.2.25.
2016-07-21 13:56:13 +03:00
Efraim Flashner 132e14b4cc
gnu: texlive: Use https.
* gnu/packages/tex.scm (texlive-bin, texlive-texmf, texlive)[license]:
Use 'https' in the url.
[home-page]: Use 'https' in the url.
2016-07-21 12:56:17 +03:00
Efraim Flashner 29a56d8eaf
gnu: texlive: Update in-place source updates.
* gnu/packages/tex.scm (texlive-texmf-source, texlive-bin)[source]:
Update to 20160523b.
2016-07-21 12:46:12 +03:00
Leo Famulari d23d1ddf6e
gnu: msmtp: Update to 1.6.5.
* gnu/packages/mail.scm (msmtp): Update to 1.6.5.
[source]: Update source URL.
2016-07-21 01:43:01 -04:00
Eric Bavier 2908087013
gnu: superlu-dist: Remove non-free source.
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
2016-07-20 21:16:25 -05:00
Eric Bavier 8787c555d9
gnu: slepc: Update to 3.7.1.
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
2016-07-20 21:16:25 -05:00
Eric Bavier fafd623e49
gnu: petsc: Update to 3.7.2.
* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
2016-07-20 21:16:24 -05:00
Eric Bavier b730b43770
gnu: petsc: Make header generation reproducible.
* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from
  petscmachineinfo.h header.
2016-07-20 21:16:24 -05:00
Eric Bavier 64dcc28963
gnu: petsc: Use modify-phases.
* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
2016-07-20 21:16:24 -05:00
Eric Bavier 9474a4b3ec
gnu: openmpi: Make binaries reproducible.
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove timestamps from
source files.  Delete installed configure logs.
2016-07-20 21:16:24 -05:00
Eric Bavier 6876590fd4
gnu: openmpi: Update to 1.10.3.
* gnu/packages/mpi.scm (openmpi): Update to 1.10.3.
[source]: Use https.
2016-07-20 21:15:37 -05:00
Eric Bavier 995a09e055
gnu: superlu: Update to 5.2.1.
* gnu/packages/maths.scm (superlu): Update to 5.2.1.
[source]: Remove non-free MC64 code.
[inputs]: Use openblas instead of lapack's BLAS.
[build-system]: Use cmake-build-system.
[arguments]: Remove custom phases and replace with CMake flags.
[license]: List additional licenses for some source and example files.
2016-07-20 18:31:16 -05:00
Eric Bavier d721c83a63
gnu: Add libhilbert.
* gnu/packages/maths.scm (libhilbert): New variable.
2016-07-20 18:31:16 -05:00
Ricardo Wurmus cdf8f39195
gnu: Add allegro-5.0.
* gnu/packages/game-development.scm (allegro-5.0): New variable.
2016-07-20 22:19:34 +02:00
Ricardo Wurmus 19d311b4f2
gnu: Add allegro.
* gnu/packages/game-development.scm (allegro): New variable.
2016-07-20 22:19:34 +02:00
Efraim Flashner 5f01078129
gnu: julia: Build with zlib.
* gnu/packages/julia.scm (julia)[inputs]: Add zlib.
2016-07-20 11:37:01 +03:00
Efraim Flashner c23c628ea7
Revert "gnu: julia: Build with zlib."
This reverts commit 95bf72eeb0.
2016-07-20 11:37:01 +03:00
Efraim Flashner 95bf72eeb0
gnu: julia: Build with zlib.
* gnu/packages/julia.scm (julia)[inputs]: Add zlib.
2016-07-20 09:11:16 +03:00
Efraim Flashner 885fa1eec5
gnu: aria2: Update to 1.25.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.25.0.
2016-07-20 06:49:44 +03:00
Ricardo Wurmus 909147e43f
services: Add pam-limits-service.
* gnu/system/pam.scm (<pam-limits-entry>): New record type.
(pam-limits-entry, pam-limits-entry->string): New procedures.
* gnu/services/base.scm (pam-limits-service-type): New variable.
(pam-limits-service): New procedure.
* doc/guix.texi (Base Services): Document it.
2016-07-19 23:50:03 +02:00
Ludovic Courtès 8e9ba611cb
gnu: atlas: Use @example in description.
* gnu/packages/maths.scm (atlas)[description]: Use "@example".
2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice d97c429a34
gnu: atlas: Use cpupower in description.
* gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector'
with its replacement 'cpupower --governor'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice 58d6a1f227
gnu: Add cpupower.
* gnu/packages/linux.scm (cpupower): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice 592ccdd388
gnu: Add ssdeep.
* gnu/packages/datastructures.scm (ssdeep): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19 23:03:30 +02:00
David Craven 7fe3f8cf6e
gnu: mesa-utils: Update to 8.3.0.
* gnu/packages/gl.scm (mesa-utils): Update to 8.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19 23:03:30 +02:00
David Craven 3a92a5b36d
gnu: Order module imports in (gnu packages gl) alphabetically.
* gnu/packages/gl.scm: Order module imports alphabetically.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19 23:03:30 +02:00
David Craven 584f2e1bc1
gnu: gl: Change 'l:' prefix to 'license:'.
* gnu/packages/gl.scm: Change #:prefix l: to #:prefix license:.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19 23:03:30 +02:00
Efraim Flashner aab76e80d2
gnu: python-pyquery: Update to 1.2.13.
* gnu/packages/python.scm (python-pyquery): Update to 1.2.13.
2016-07-19 21:07:37 +03:00
Efraim Flashner d5ccd9abf6
gnu: python-cssselect: Update to 0.9.2.
* gnu/packages/python.scm (python-cssselect): Update to 0.9.2.
[source]: Use 'pypi-uri' format.
2016-07-19 21:03:31 +03:00
Efraim Flashner 58d1d816ba
gnu: python2-cssutils: Update to 1.0.1.
* gnu/packages/python.scm (python2-cssutils): Update to 1.0.1.
[source]: Use 'pypi-uri' format.
2016-07-19 21:00:52 +03:00
Efraim Flashner 31e8a074c7
gnu: calibre: Update to 2.62.0.
* gnu/packages/ebook.scm (calibre): Update to 2.62.0.
2016-07-19 20:47:25 +03:00
Efraim Flashner d58a32037e
gnu: python-lxml: Update to 3.6.0.
* gnu/packages/python.scm (python-lxml): Update to 3.6.0.
2016-07-19 20:11:32 +03:00
ng0 72fb1b24d9
gnu: Use HTTPS home-page URLs for PGP-related packages.
* gnu/packages/gnupg.scm (gnupg, gpgme, libassuan, libgcrypt, libgpg-error,
libksba, npth, pius, python-gnupg, signing-party)[home-page]: Use HTTPS URLs.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-18 23:48:42 -04:00
ng0 f04a7943f4
gnu: libassuan: Update to 2.4.3.
* gnu/packages/gnupg.scm (libassuan): Update to 2.4.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-18 23:46:32 -04:00
Eric Bavier 0935fb271b
gnu: llvm: Build without debugging symbols.
* gnu/packages/llvm.scm (llvm)[arguments]: Add #:build-type.
2016-07-18 20:28:21 -05:00
Eric Bavier 3b956a3392
gnu: llvm: Update to 3.8.1.
* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 3.8.1.
(llvm-3.7, clang-runtime-3.7, clang-3.7): New variables.
(clang-runtime-from-llvm)[arguments]: Disable tests, which were not
being run for previous versions anyhow but now fail hard.
(clang-from-llvm): Add #:patches keyword argument.
* gnu/packages/patches/clang-3.8-libc-search-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Dennis Mungai <dmngaie@gmail.scm>
2016-07-18 20:28:21 -05:00
Eric Bavier 3ebc09057a
gnu: llvm: Update to 3.7.1.
* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 3.7.1
(llvm-3.6, clang-runtime-3.6, clang-3.6): New variables.
2016-07-18 20:28:21 -05:00
Eric Bavier ee0774305f
gnu: llvm: Add libffi and zlib inputs.
* gnu/packages/llvm.scm (llvm)[inputs]: Add libffi and zlib.
[arguments]: Add cmake flag for libffi to #:configure-flags.

Co-authored-by: Dennis Mungai <dmngaie@gmail.com>
2016-07-18 20:28:21 -05:00
Eric Bavier ac00973cd9
gnu: llvm: Add "license:" prefix.
* gnu/packages/llvm.scm: Import (guix licenses) with "license:" prefix.
2016-07-18 20:28:21 -05:00
Eric Bavier a53c486dad
gnu: llvm: Update to 3.5.2.
* gnu/packages/llvm.scm (llvm-3.5): Update to 3.5.2.
2016-07-18 20:28:21 -05:00
Ludovic Courtès 2c2ec261a8
services: shepherd: Clarify error message about missing service.
Suggested by Tobias Geerinckx-Rice <me@tobias.gr>.

* gnu/services/shepherd.scm (assert-valid-graph)[assert-satisfied-requirements]:
Clarify error message.
2016-07-19 00:07:12 +02:00
Nicolas Goaziou a2d469afaf
gnu: giac-xcas: Update to 1.2.2-75.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-75.
2016-07-18 22:39:09 +02:00
Leo Famulari 2d656a93db
Revert "gnu: gnutls: Fix test failure."
This reverts commit 1d14bf9f5f.
2016-07-18 12:47:18 -04:00
Mark H Weaver 273260646d
gnu: gd: Fix failing test on i686.
* gnu/packages/patches/gd-fix-test-on-i686.patch: New file.
* gnu/local.mk (dist_PATCH_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add the patch.
2016-07-18 12:36:01 -04:00
Leo Famulari 1d14bf9f5f
gnu: gnutls: Fix test failure.
* gnu/packages/patches/gnutls-fix-stale-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls/fixed): New variable.
2016-07-18 12:30:39 -04:00
Efraim Flashner 6aabc87d50
gnu: libinput: Update to 1.4.0.
* gnu/packages/freedesktop.scm (libinput): Update to 1.4.0.
2016-07-18 14:49:49 +03:00
Efraim Flashner cff826ba05
gnu: efl: Use 'modify-phases'.
* gnu/packages/enlightenment.scm (efl)[arguments]: Use 'modify-phases'.
2016-07-18 14:40:55 +03:00
Efraim Flashner ebb365ed57
gnu: efl: Remove valgrind from inputs.
* gnu/packages/enlightenment.scm (efl)[inputs]: Remove valgrind.
2016-07-18 14:29:04 +03:00
Efraim Flashner cb277904a4
gnu: python-gst: Update to 1.8.2.
* gnu/packages/gstreamer.scm (python-gst): Update to 1.8.2.
2016-07-18 14:11:21 +03:00
Efraim Flashner 443975ae8e
gnu: gst-libav: Update to 1.8.2.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.8.2.
2016-07-18 14:10:54 +03:00
Efraim Flashner 935742f38f
gnu: gst-plugins-ugly: Update to 1.8.2.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.8.2.
2016-07-18 14:10:06 +03:00
Efraim Flashner 727a9a5bd4
gnu: gst-plugins-good: Update to 1.8.2.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.8.2.
2016-07-18 14:09:36 +03:00
Efraim Flashner 0c19247cea
gnu: gst-plugins-base: Update to 1.8.2.
* gnu/pakcages/gstreamer.scm (gst-plugins-base): Update to 1.8.2.
2016-07-18 14:09:03 +03:00
Efraim Flashner ddaf9b1822
gnu: gstreamer: Update to 1.8.2.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.8.2.
2016-07-18 14:08:26 +03:00
Ludovic Courtès b1bf155ffd
tests: install: Generalize 'run-install'.
* gnu/tests/install.scm (%simple-installation-script): New variable.
Contains installation script formerly in 'run-install'.
(run-install): Add 'target-os', 'target-os-source', and #:script
parameters.  Honor them.
(qemu-command/writable-image): New procedure.
(%test-installed-os): Use it.
2016-07-18 01:26:03 +02:00