deee5ddaf4
gnu: python-rpy2: Update to 2.9.0.
...
* gnu/packages/python.scm (python-rpy2): Update to 2.9.0.
[arguments]: Run tests before install phase; add build phase "fix-tests".
[propagated-inputs]: Add python-jinja2 and python-pytz.
[inputs]: Add r-ggplot2, r-rsqlite, r-dplyr, r-dbplyr, and python-numpy.
2017-08-31 18:24:51 +02:00
c92483bd63
gnu: python-rpy2: Update license.
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* gnu/packages/python.scm (python-rpy2)[license]: Correct GPLv3+ to GPLv2+;
list additional licenses.
2017-08-31 18:24:51 +02:00
caa4e796e4
gnu: Add r-dbplyr.
...
* gnu/packages/statistics.scm (r-dbplyr): New variable.
2017-08-31 18:24:51 +02:00
4eebfefe7e
gnu: retux: Update to 1.3.5.
...
* gnu/packages/games.scm (retux): Update to 1.3.5.
2017-08-31 11:38:00 -04:00
95c1324adc
gnu: python-tmx: Update to 1.10.
...
* gnu/packages/game-development.scm (python-tmx): Update to 1.10.
2017-08-31 11:38:00 -04:00
b1d1a10c7c
gnu: python-sge-pygame: Update to 1.5.1.
...
* gnu/packages/game-development.scm (python-sge-pygame,
python2-sge-pygame): Update to 1.5.1.
2017-08-31 11:37:59 -04:00
7e31427ff0
gnu: python-pyjwt: Update to 1.5.2 [fixes CVE-2017-11424].
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* gnu/packages/python.scm (python-pyjwt): Update to 1.5.2.
[source]: Add snippet to remove pre-compiled files.
[native-inputs]: Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
2017-08-31 15:45:43 +02:00
5883bb76f8
gnu: Add emacs-idris-mode.
...
* gnu/packages/emacs.scm (emacs-idris-mode): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 14:58:34 +02:00
b9dcaced16
gnu: Add emacs-prop-menu.
...
* gnu/packages/emacs.scm (emacs-prop-menu): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 14:57:53 +02:00
b6dc69af1d
services: mpd: Remove the mpd-file field.
...
Since MPD switches user, the pid-file must be in a writable dir. This
is now always /var/run/mpd/(user)/pid.
* gnu/services/audio.scm (mpd-service-type): Add a activation-service
extension.
(<mpd-configuration>)[pid-file]: Remove.
(mpd-service): Rename to...
(mpd-shepherd-service): ... this.
(mpd-file-name, mpd-service-activation): New procedure.
* doc/guix.texi (Audio Services): Document the changes.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 14:43:26 +02:00
79ada57ba9
gnu: knot: Update to 2.5.4.
...
* gnu/packages/dns.scm (knot): Update to 2.5.4.
2017-08-31 13:53:04 +02:00
1c25a52c4a
gnu: Add pt-scotch32.
...
* gnu/packages/maths.scm (pt-scotch32): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 12:34:50 +02:00
1c39f3b877
gnu: Add "scotch32".
...
* gnu/packages/maths.scm (scotch32): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 12:34:50 +02:00
0691851a64
gnu: bioinformatics: Work around more "dotless @INC" build failures.
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* gnu/packages/bioinformatics.scm (ncbi-vdb, sra-tools)[arguments]: Add
'set-perl-search-path' phase.
2017-08-31 12:37:05 +08:00
c959e5a1dc
gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}.
...
* gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.2.7)[source]: Use it.
2017-08-31 10:43:19 +08:00
db542518b3
gnu: ruby-2.3.4: Fix CVE-2017-{0899,0900,0901,0902}.
...
* gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.3.4)[source]: Use it.
2017-08-31 10:43:19 +08:00
9770cbf9e2
gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}.
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* gnu/packages/patches/ruby-rubygems-2612-ruby24.patch,
gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ruby.scm (ruby-2.4.1)[source]: Use them.
2017-08-31 10:43:19 +08:00
690a904ad7
gnu: metabat: Update to 2.11.3.
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* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.3.
[source]: Use git-fetch. Remove boost-related patch.
* gnu/packages/patches/metabat-fix-boost-issue.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-31 10:43:18 +08:00
2d2e97bd71
gnu: vlc: Fix build and clean up expression.
...
Commit 3e0c54bf4d
2017-08-31 03:43:54 +02:00
3e0c54bf4d
gnu: vlc: Recover lost phase.
...
This is a followup to eb1f2420d5
2017-08-31 03:05:24 +02:00
4f68156140
gnu: gd: Replace with 2.2.5.
...
Fixes CVE-2017-6362 and CVE-2017-7890.
* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd-2.2.5): New variable.
* gnu/packages/php.scm (gd-for-php): Remove variable
(php)[inputs]: Replace GD-FOR-PHP with GD-2.2.5.
* gnu/packages/patches/gd-CVE-2017-7890.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-31 02:49:43 +02:00
cad88b8533
gnu: claws-mail: Update to 3.15.1.
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* gnu/packages/mail.scm (claws-mail): Update to 3.15.1.
2017-08-31 00:57:46 +02:00
9ff7161a06
gnu: Add texlive-latex-acmart.
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* gnu/packages/tex.scm (texlive-latex-acmart): New variable.
2017-08-31 00:03:20 +02:00
9749746544
gnu: mbedtls-apache: Update to 2.6.0 [fixes CVE-2017-14032].
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* gnu/packages/tls.scm (mbedtls-apache): Update to 2.6.0.
2017-08-30 22:41:40 +02:00
eb1f2420d5
gnu: vlc: Remove obsolete test workaround.
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* gnu/packages/video.scm (vlc)[arguments]: Drop ac_cv_c_fast_math from
#:configure-flags. Remove related 'bootstrap' phase.
2017-08-30 22:35:45 +02:00
552c3e95f3
gnu: vlc: Build with modular qt.
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* gnu/packages/video.scm (vlc)[inputs]: Remove QT. Add QTBASE and QTX11EXTRAS.
[arguments]: Add CXXFLAGS=-std=gnu++11 to #:configure-flags. Add
'fix-qt-include' phase.
2017-08-30 22:22:51 +02:00
2de7d137b3
gnu: qemu: Update to 2.10.0.
...
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11334.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch,
gnu/packages/patches/qemu-CVE-2017-12809.patch:
gnu/packages/patches/qemu-CVE-2017-7493.patch,
gnu/packages/patches/qemu-CVE-2017-8112.patch,
gnu/packages/patches/qemu-CVE-2017-8309.patch,
gnu/packages/patches/qemu-CVE-2017-8379.patch,
gnu/packages/patches/qemu-CVE-2017-8380.patch,
gnu/packages/patches/qemu-CVE-2017-9524.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.0.
[source](patches): Remove.
2017-08-30 20:50:13 +02:00
ffeeda6bab
gnu: jsoncpp: Update to 1.8.2.
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* gnu/packages/serialization.scm (jsoncpp): Update to 1.8.2.
2017-08-30 20:36:40 +02:00
799247d2d9
gnu: multiqc: Update to 1.2.
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* gnu/packages/bioinformatics.scm (multiqc): Update to 1.2.
[source]: Remove patches.
[arguments]: Remove to enable tests.
[propagated-inputs]: Add python-spectra, python-requests, python-markdown,
python-lzstring.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-30 17:32:00 +02:00
4a7d2009c8
gnu: Add python-spectra.
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* gnu/packages/python.scm (python-spectra, python2-spectra): New variables.
2017-08-30 17:32:00 +02:00
beed6abc1d
gnu: Add python-colormath.
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* gnu/packages/python.scm (python-colormath, python2-colormath): New
variables.
2017-08-30 17:31:59 +02:00
bac5fd21a1
gnu: python-jinja2: Update to 2.9.6.
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* gnu/packages/python.scm (python-jinja2): Update to 2.9.6.
[arguments]: Add build phase "delete-incompatible-files".
2017-08-30 17:31:59 +02:00
e7c76b0661
gnu: Add python-lzstring.
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* gnu/packages/compression.scm (python-lzstring, python2-lzstring): New
variables.
2017-08-30 17:31:59 +02:00
b9319c1e22
gnu: hyperrogue: Update to 10.0g.
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* gnu/packages/games.scm (hyperrogue): Update to 10.0g.
2017-08-30 07:43:24 -04:00
a00379e7dc
gnu: Add linkchecker.
...
* gnu/packages/web.scm (linkchecker): New variable.
2017-08-30 12:53:39 +05:30
c93ffc11d0
gnu: kdevelop: Update to 5.1.2.
...
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.2.
2017-08-30 09:20:53 +02:00
e0fbf37350
gnu: coda: Update to 2.18.2.
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* gnu/packages/maths.scm (coda): Update to 2.18.2.
2017-08-30 09:20:52 +02:00
f3f82d1d1f
gnu: Add fzy.
...
* gnu/packages/shellutils.scm (fzy): New variable.
2017-08-30 09:20:52 +02:00
9dd14f1e08
gnu: wine: Update to 2.0.2.
...
* gnu/packages/wine.scm (wine): Update to 2.0.2.
2017-08-30 09:20:52 +02:00
13035eb2de
gnu: electrum: Update to 2.9.3.
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* gnu/packages/finance.scm (electrum): Update to 2.9.3.
[inputs]: Add python2-pyaes, python2-pysocks. Remove python2-slowaes.
2017-08-30 09:20:52 +02:00
7a276cd945
gnu: Add python-pyaes.
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* gnu/packages/python.scm (python-pyaes, python2-pyaes): New variables.
2017-08-30 09:20:52 +02:00
07e62ae1c2
gnu: Add python-pysocks.
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* gnu/packages/python.scm (python-pysocks, python2-pysocks): New variables.
2017-08-30 09:20:45 +02:00
b85a66b4d5
gnu: dtach: Install man page.
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* gnu/packages/screen.scm (dtach)[arguments]: Install the dtach(1) man page.
2017-08-30 04:45:43 +02:00
249ab8cc3e
gnu: nginx: Install man page.
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* gnu/packages/web.scm (nginx)[arguments]: Install the nginx(8) man page,
and add a comment about the non-GNU configure script.
2017-08-30 03:24:19 +02:00
3c8ba11a97
Update e-mail for Kei Kebreau.
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* .mailmap: Map kei@openmailbox.org to current address.
* gnu/local.mk: Replace kei@openmailbox.org to current address.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnustep.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/hexedit.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/web-browsers.scm: Likewise.
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
2017-08-29 20:13:24 -04:00
b1c699c4c0
gnu: perl-tk: Update to 804.034.
...
* gnu/packages/tcl.scm (perl-tk): Update to 804.034.
2017-08-29 23:40:09 +02:00
77217b4393
gnu: font-mathjax, js-mathjax: Remove hard-coded version.
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* gnu/package-s/javascript.scm (font-mathjax, js-mathjax)[arguments]: Re-use
font-mathjax's ‘version’ field instead of duplicating the version number.
2017-08-29 23:40:09 +02:00
d6a7268bae
gnu: font-mathjax: Update to 2.7.2.
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* gnu/packages/javascript.scm (font-mathjax): Update to 2.7.2.
2017-08-29 23:40:09 +02:00
d3f0e09882
gnu: tiled: Update to 1.0.3.
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* gnu/packages/game-development.scm (tiled): Update to 1.0.3.
2017-08-29 23:40:08 +02:00
08cba8cca4
gnu: libgcrypt: Fix CVE-2017-0379.
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* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New variable.
2017-08-29 23:32:16 +03:00
Ricardo Wurmus