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15296 Commits

Author SHA1 Message Date
Thomas Danckaert becbbefc9b
gnu: Add hdf4 
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-12 23:35:43 +02:00
Ludovic Courtès 69e7322fdc
build: Make 'assert-no-store-file-names' effective. 
Lack of '-E' made it useless.

* Makefile.am (assert-no-store-file-names): Pass '-E' to grep.  Add
'--exclude' and '--exclude-dir' flags.
 2016-10-12 23:35:43 +02:00
Ludovic Courtès 402bb3b9f7
build: Arrange so temporary .go files are deleted upon SIGINT. 
* build-aux/compile-all.scm: Install SIGINT handler.
 2016-10-12 23:35:41 +02:00
John Darrington eb419bc9fe
gnu: Add NFS related services. 
* gnu/services/nfs.scm (pipefs-service-type): New variable,
(gss-service-type): New variable, (idmap-service-type) New variable.

* doc/guix.texi (Network File System): New node.
 2016-10-12 19:26:10 +02:00
Tobias Geerinckx-Rice ff9c2d819a
gnu: mcelog: Update to 142. 
* gnu/packages/linux.scm (mcelog): Update to 142.
 2016-10-12 18:20:17 +02:00
Tobias Geerinckx-Rice 9c49da5778
gnu: btrfs-progs: Update to 4.8.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.1.
 2016-10-12 18:19:48 +02:00
Mark H Weaver bfb48f4f33
gnu: icecat: Update to 45.3.0-gnu1-beta. Add fixes from Firefox ESR 45.4.0. 
Includes fixes for CVE-2016-5250, CVE-2016-5257, CVE-2016-5261, CVE-2016-5270,
CVE-2016-5272, CVE-2016-5274, CVE-2016-5276, CVE-2016-5277, CVE-2016-5278,
CVE-2016-5280, CVE-2016-5281, and CVE-2016-5284.

* gnu/packages/gnuzilla.scm (mozilla-patch): New procedure.
(icecat): Update to 45.3.0-gnu1.
[source]: Add alternate source URI for the beta release.  Update patches.
[inputs]: Replace 'sqlite' input with a customized sqlite with
SQLITE_ENABLE_DBSTAT_VTAB support.
[native-inputs]: Add 'which'.
* gnu/packages/patches/icecat-avoid-bundled-includes.patch: Rename to...
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: ... and adapt
to version 45.
* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch,
gnu/packages/patches/icecat-CVE-2016-2819.patch,
gnu/packages/patches/icecat-CVE-2016-2821.patch,
gnu/packages/patches/icecat-CVE-2016-2824.patch,
gnu/packages/patches/icecat-CVE-2016-2828.patch,
gnu/packages/patches/icecat-CVE-2016-2831.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
 2016-10-11 12:59:26 -04:00
David Thompson b25f060fbd
gnu: redis: Update to 3.2.4. 
* gnu/packages/databases.scm (redis): Update to 3.2.4.
[arguments]: Add LDFLAGS to #:make-flags to work around missing linker
flag.
 2016-10-11 12:24:57 -04:00
Leo Famulari 65375f74bc
gnu: newt: Update source and home-page URLs. 
* gnu/packages/slang.scm (newt)[source]: Update URL.
[home-page]: Update URL.
 2016-10-11 12:05:40 -04:00
Ben Woodcroft 3dd50d974b
gnu: vsearch: Update to 2.3.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.0.
 2016-10-11 22:29:48 +10:00
Ben Woodcroft 99c9056141
gnu: diamond: Update to 0.8.23. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.23.
 2016-10-11 19:51:49 +10:00
ng0 75fa19125f
Update e-mail address for ng0. 
* .mailmap: Update entries for ng0.
 2016-10-11 12:02:21 +03:00
Efraim Flashner bde70caa06
gnu: qemu: Patch CVE-2016-857{6,7,8}. 
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2016-8576.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch,
gnu/packages/patches/qemu-CVE-2016-8578.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2016-10-11 10:59:07 +03:00
Ricardo Wurmus 8f941dd24f
gnu: Add infamous-plugins. 
* gnu/packages/audio.scm (infamous-plugins): New variable.
 2016-10-10 22:41:34 +02:00
Ludovic Courtès d722678633
grafts: Always make directories #o755. 
Fixes <http://bugs.gnu.org/22954>.
Reported by Albin <albin@fripost.org>
and Jeffrey Serio <serio.jeffrey@gmail.com>.

* guix/build/graft.scm (mkdir-p*): New procedure.
(rewrite-directory): Use it instead of 'mkdir-p'.
 2016-10-10 21:40:23 +02:00
Ludovic Courtès 813bcbc4ea
bournish: Add 'reboot' command. 
Suggested by Ricardo Wurmus.

* guix/build/bournish.scm (reboot-command): New procedure.
(%commands): Add it.
 2016-10-10 21:40:23 +02:00
Ludovic Courtès 7c515a43b0
substitute: Make download messages more concise. 
'guix substitute' now displays 2 lines per download instead of 4.
Suggested by Ricardo Wurmus.

* guix/scripts/substitute.scm (assert-valid-narinfo): Have #:verbose?
default to #f.  Remove leading newline in message.
(process-substitution): Display the URI rather than the store file name.
Display two newlines after the substitution.
 2016-10-10 21:40:23 +02:00
ng0 99a61dad33
gnu: font-un: Update source uri. 
Fixes <http://bugs.gnu.org/22908>.

* gnu/packages/fonts.scm (font-un)[source]: Update source uri.
 2016-10-10 13:52:51 -04:00
Tobias Geerinckx-Rice 3b1b56379c
gnu: man-pages: Update to 4.08. 
* gnu/packages/man.scm (man-pages): Update to 4.08.
 2016-10-10 16:00:23 +02:00
Efraim Flashner 5be2931c1e
gnu: cmocka: Update to 1.1.0. 
* gnu/packages/check.scm (cmocka): Update to 1.1.0.
 2016-10-10 15:13:12 +03:00
Efraim Flashner 997b6ea504
gnu: cppcheck: Update to 1.76. 
* gnu/packages/check.scm (cppcheck): Update to 1.76.
 2016-10-10 13:50:23 +03:00
Efraim Flashner 7286dd218b
gnu: libuninameslist: Use 'modify-phases' syntax. 
* gnu/packages/fontutils.scm (libuninameslist)[arguments]: Use
'modify-phases' syntax.
 2016-10-10 12:58:14 +03:00
Efraim Flashner f726b7c526
gnu: libuninameslist: Update to 20160701. 
* gnu/packages/fontutils.scm (libuninameslist): Update to 20160701.
 2016-10-10 12:56:54 +03:00
Efraim Flashner b07e086373
gnu: bash-completion: Update to 2.4. 
* gnu/packages/bash.scm (bash-completion): Update to 2.4.
[home-page]: Update to redirected home-page.
 2016-10-10 11:58:11 +03:00
Efraim Flashner 523b77faef
import: github: Add .love extension. 
* guix/import/github.scm (find-extension): Add '.love' extension to the
list of extensions checked.
 2016-10-10 11:52:03 +03:00
Efraim Flashner 36646075ef
gnu: obs: Update to 0.16.2. 
* gnu/packages/video.scm (obs): Update to 0.16.2.
 2016-10-10 11:07:07 +03:00
Efraim Flashner ff0ecefc0e
gnu: laby: Update source uri. 
* gnu/packages/games.scm (laby)[source]: Use the publicly visible
download uri.
 2016-10-10 09:36:07 +03:00
Ricardo Wurmus aed023ffd4
gnu: Add gxtuner. 
* gnu/packages/music.scm (gxtuner): New variable.
 2016-10-10 07:51:24 +02:00
Christopher Baines 6930804312
gnu: gnome: Add pinentry-gnome3 to gnome 
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add
pinentry-gnome3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-10 00:06:15 +02:00
Christopher Baines 41edb23f5e
gnu: Add pinentry-gnome3. 
* gnu/packages/gnupg.scm (pinentry-gnome3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-10 00:06:15 +02:00
Christopher Baines 9614897b71
gnu: pinentry: Remove 'gpg2' from description. 
* gnu/package/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-qt)
[description]: The default in Guix is gpg, so only use this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-10 00:06:15 +02:00
Al McElrath d976eccd26
gnu: sane-backends: Update to 1.0.25. 
* gnu/packages/scanner.scm (sane-backends): Update to 1.0.25.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-09 17:50:28 -04:00
Marius Bakke fc0081213d
gnu: wpa-supplicant: Update to 2.6. 
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Update to
  2.6. Remove 'patches' field.
* gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch: Delete
  files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-09 17:37:36 -04:00
Ludovic Courtès 6f9d5b2e8c
gnu: guile-ssh: Update to 0.10.1. 
* gnu/packages/ssh.scm (libssh-0.6): Remove.
(guile-ssh): Update to 0.10.1.
[inputs]: Use LIBSSH instead of LIBSSH-0.7.3.
[arguments]: Remove #:configure-flags.
 2016-10-09 23:23:11 +02:00
Ludovic Courtès 92b725829b
gnu: guile-ssh: Compile .scm files after patching them. 
Before this commit, the .go files were obtained by compiling the
unpatched .scm files, so they would refer to libguile-ssh without its
absolute file name.

* gnu/packages/ssh.scm (guile-ssh)[arguments]: Move
'fix-libguile-ssh-file-name' before 'build'.  Have it run "make install
-C libguile-ssh" first.
 2016-10-09 23:23:11 +02:00
Ludovic Courtès 8a8f6590ec
gnu: guile-ssh: Use 'modify-phases'. 
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Use 'modify-phases'.
 2016-10-09 23:23:11 +02:00
Efraim Flashner a9c958b5aa
gnu: gcj: Switch dejagnu test command. 
* gnu/packages/gcc.scm (gcj)[arguments]: Switch the depreciated dejagnu
command 'absolute' for the new testing command 'file normalize'.
 2016-10-10 00:16:56 +03:00
Kei Kebreau fedcb99d84
gnu: lynx: Update to 2.8.9dev.9 and fix GnuTLS support. 
* gnu/packages/lynx.scm (lynx): Update to 2.8.9dev.9.
[arguments]: Append the path to the GnuTLS to "--with-gnutls=".
 2016-10-09 16:58:48 -04:00
Tobias Geerinckx-Rice 8ea83d60e4
gnu: hexchat: Update to 2.12.2. 
* gnu/packages/messaging.scm (hexchat): Update to 2.12.2.
 2016-10-09 22:55:23 +02:00
Leo Famulari aae34a0c2d
gnu: vdirsyncer: Update to 0.13.1. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.13.1.
 2016-10-09 16:49:27 -04:00
Leo Famulari 9e672bcc0b
gnu: libupnp: Fix CVE-2016-6255. 
* gnu/packages/patches/libupnp-CVE-2016-6255.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libupnp.scm (libupnp): Use it.
 2016-10-09 15:57:28 -04:00
Ricardo Wurmus a76abae19f
gnu: ardour: Update to 5.4. 
* gnu/packages/audio.scm (ardour): Update to 5.4.
[inputs]: Add libarchive.
 2016-10-09 20:10:56 +02:00
Danny Milosavljevic adc2f048cb
gnu: Add gtkwave. 
* gnu/packages/fpga.scm (gtkwave): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-09 18:19:22 +03:00
Danny Milosavljevic bca3797be4
gnu: Add arachne-pnr. 
* gnu/packages/fpga.scm (arachne-pnr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-09 18:19:22 +03:00
Danny Milosavljevic 36aa11c785
gnu: Add icestorm. 
* gnu/packages/fpga.scm (icestorm): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-09 18:19:22 +03:00
Danny Milosavljevic 92fc940fdb
gnu: Add yosys. 
* gnu/packages/fpga.scm (yosys): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-09 18:19:22 +03:00
Danny Milosavljevic 44721336de
gnu: Add iverilog. 
* gnu/packages/fpga.scm (iverilog): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-09 18:19:21 +03:00
Danny Milosavljevic adba5f08de
gnu: Add abc. 
* gnu/packages/fpga.scm (abc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-09 18:19:10 +03:00
Ricardo Wurmus 7f43ff965f
gnu: guile-next: Increase timeout. 
* gnu/packages/guile.scm (guile-next)[properties]: Set timeout to
20 hours.
 2016-10-09 15:46:52 +02:00
Ricardo Wurmus a299a8992c
gnu: Add newlib-nano-arm-none-eabi. 
* gnu/packages/embedded.scm (newlib-nano-arm-none-eabi): New variable.
 2016-10-09 15:45:59 +02:00