Commit Graph

10500 Commits

Author SHA1 Message Date
Ricardo Wurmus 3ef08dceb3
gnu: qtractor: Update to 0.7.9.
* gnu/packages/music.scm (qtractor): Update to 0.7.9.
2016-09-26 08:16:13 +02:00
Ricardo Wurmus f3cfe4515a
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
  New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus 684f29bd2e
gnu: Add r-grohmm.
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus 7f903d7300
gnu: Add r-systempiper.
* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus cb99d457f0
gnu: Add r-shortread.
* gnu/packages/bioinformatics.scm (r-shortread): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus 89f40c5e4e
gnu: Add r-gostats.
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus 1a1931f7e0
gnu: Add r-category.
* gnu/packages/bioinformatics.scm (r-category): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus ad740ff818
gnu: Add r-gseabase.
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
2016-09-26 07:47:53 +02:00
Ricardo Wurmus cd9e7dc7ff
gnu: Add r-rbgl.
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
2016-09-26 03:25:23 +02:00
Ricardo Wurmus e816377374
gnu: Add r-annotationforge.
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
2016-09-26 03:25:17 +02:00
Ricardo Wurmus 9e330278ee
gnu: Add r-batchjobs.
* gnu/packages/statistics.scm (r-batchjobs): New variable.
2016-09-26 03:25:11 +02:00
Ricardo Wurmus dc4fb16d25
gnu: Add r-fail.
* gnu/packages/statistics.scm (r-fail): New variable.
2016-09-26 03:25:06 +02:00
Ricardo Wurmus cd26ec3bbf
gnu: Add r-bbmisc.
* gnu/packages/statistics.scm (r-bbmisc): New variable.
2016-09-26 03:25:02 +02:00
Ricardo Wurmus 929d4aaea1
gnu: Add r-checkmate.
* gnu/packages/statistics.scm (r-checkmate): New variable.
2016-09-26 03:24:59 +02:00
Ricardo Wurmus 0d90462fa3
gnu: Add r-backports.
* gnu/packages/statistics.scm (r-backports): New variable.
2016-09-26 03:24:55 +02:00
Ricardo Wurmus 8e1bfc7e8c
gnu: Add r-sendmailr.
* gnu/packages/statistics.scm (r-sendmailr): New variable.
2016-09-26 03:24:50 +02:00
Ricardo Wurmus 0c77fd50f8
gnu: Add r-pheatmap.
* gnu/packages/statistics.scm (r-pheatmap): New variable.
2016-09-26 03:24:44 +02:00
Ricardo Wurmus 092197a548
gnu: Add r-matrix.
* gnu/packages/statistics.scm (r-matrix): New variable.
2016-09-26 03:21:32 +02:00
Ricardo Wurmus ad34f0ac96
gnu: Add r-deseq2.
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
2016-09-26 03:21:27 +02:00
Ricardo Wurmus 2301fd3e4d
gnu: Add r-genefilter.
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
2016-09-26 03:21:19 +02:00
Ricardo Wurmus 2d21d44dbd
gnu: Add r-hmisc.
* gnu/packages/statistics.scm (r-hmisc): New variable.
2016-09-26 03:21:13 +02:00
Ricardo Wurmus 07a664cde0
gnu: Add r-geneplotter.
* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
2016-09-26 03:21:07 +02:00
Ricardo Wurmus 8c6de58849
gnu: Add r-annotate.
* gnu/packages/bioinformatics.scm (r-annotate): New variable.
2016-09-26 03:20:59 +02:00
Ricardo Wurmus 2213730c5b
gnu: Add r-rpart.
* gnu/packages/statistics.scm (r-rpart): New variable.
2016-09-26 03:20:52 +02:00
Ricardo Wurmus 356c6d61a6
gnu: Add r-rjson.
* gnu/packages/web.scm (r-rjson): New variable.
2016-09-26 03:20:44 +02:00
Ricardo Wurmus bbed0ab6b4
gnu: Add r-hwriter.
* gnu/packages/web.scm (r-hwriter): New variable.
2016-09-26 03:20:19 +02:00
Ricardo Wurmus 57a31efb4b
gnu: tcc: Disable build on MIPS.
* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
2016-09-26 03:01:06 +02:00
Arun Isaac 9311722703
gnu: Add optipng.
* gnu/packages/image.scm (optipng): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-25 16:53:00 -04:00
Ricardo Wurmus 7acd71d13d
gnu: epiphany: Drop NSS and libwnck.
These dependencies were dropped in Epiphany 3.21.x.

* gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
2016-09-25 13:04:00 +02:00
Ricardo Wurmus 9f58932ecc
gnu: epiphany: Update to 3.22.0.
* gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
2016-09-25 13:04:00 +02:00
Ricardo Wurmus 58d04dbaf0
gnu: python-virtualenv: Update to 15.0.3.
* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3.
[arguments]: Disable failing test.
2016-09-25 13:04:00 +02:00
Mark H Weaver 1535c0a6b6
gnu: linux-libre: Update to 4.7.5.
* gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
2016-09-25 03:57:57 -04:00
Mark H Weaver dfcce0cc8d
gnu: linux-libre@4.4: Update to 4.4.22.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
2016-09-25 03:55:37 -04:00
John Darrington 94c5dc8c03
gnu: Add pam-krb5
* gnu/packages/admin.scm (pam-krb5): New variable.
2016-09-25 06:40:29 +02:00
Efraim Flashner a8f3d49280
gnu: privoxy: Update to 3.0.26.
* gnu/packages/tor.scm (privoxy): Update to 3.0.26.
[home-page]: Use https.
2016-09-24 23:09:14 +03:00
Efraim Flashner 0ab57b0d04
gnu: tor: Update to 0.2.8.8.
* gnu/packages/tor.scm (tor): Update to 0.2.8.8.
[source]: Update source url.
[home-page]: Use https.
2016-09-24 22:27:16 +03:00
ng0 6fc48c2ee2
gnu: Add gforth.
* gnu/packages/gforth.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-09-24 14:07:12 +08:00
Rene Saavedra 54021cd8c6
gnu: Add gnome-calculator.
* gnu/packages/gnome.scm (gnome-calculator): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-24 00:51:52 -04:00
Erik Edrosa 8058880017
gnu: Add cmark.
* gnu/packages/markdown.scm (cmark): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 20:56:51 -04:00
ng0 93666cf783
gnu: Add enet.
* gnu/packages/networking.scm (enet): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:18:10 -04:00
Danny Milosavljevic 03ddad84ba
gnu: flashrom: Update to 0.9.9
* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9.
[source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch".
[aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags.
* gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:03:19 -04:00
ng0 0f5de84e98
gnu: Add nickle.
* gnu/packages/nickle.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 18:54:24 -04:00
Efraim Flashner 047cd01d11
gnu: orpheus: Use 'modify-phases'.
* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases'
syntax.
2016-09-23 17:38:25 +03:00
Efraim Flashner 5bd6270211
gnu: orpheus: Fix build on mips64el.
* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass
"--host=mips64el-unknown-linux-gnu" to ./configure.
2016-09-23 17:38:24 +03:00
Nicolas Goaziou 236d522b80
gnu: giac-xcas: Update to 1.2.2-81.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 09:57:20 -04:00
Ricardo Wurmus 8f309571d3
gnu: r-curl: Respect CURL_CA_BUNDLE variable.
* gnu/packages/web.scm (r-curl)[arguments]: Add phase
"allow-CURL_CA_BUNDLE".
2016-09-23 13:13:41 +02:00
Ricardo Wurmus 646a84338d
gnu: sra-tools: Update to 2.7.0.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
2016-09-23 11:46:53 +02:00
Ricardo Wurmus 40974c933e
gnu: ncbi-vdb: Update to 2.7.0.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
2016-09-23 11:46:26 +02:00
Ricardo Wurmus 48b419ebd6
gnu: ngs-sdk: Update to 1.2.5.
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5.
2016-09-23 11:45:24 +02:00
Ricardo Wurmus 4781820147
gnu: randomjungle: Only build on x86_64 and i686.
* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]:
Only build on x86_64 and i686.
2016-09-23 08:23:51 +02:00
Efraim Flashner fc3b2cbb04
gnu: retroarch: Update to 1.3.6.
* gnu/packages/games.scm (retroarch): Update to 1.3.6.
2016-09-23 09:02:03 +03:00
Ricardo Wurmus 5989d4eaac
gnu: synfig: Fix isnan error.
* gnu/packages/animation.scm (synfig)[arguments]: Add build phase to
replace "::isnan" with "std::isnan".
2016-09-23 07:45:16 +02:00
Eric Bavier 56f33f3fd5
gnu: ccache: Upgrade to 3.3.1.
* gnu/packages/ccache.scm (ccache): Upgrade to 3.3.1.
[description]: Adjust supported languages.
2016-09-22 23:56:17 -05:00
Eric Bavier bd368c7174
gnu: ccache: Use modify-phases.
* gnu/packages/ccache.scm (ccache)[arguments]: Use modify-phases.
2016-09-22 23:43:20 -05:00
Eric Bavier 1a0ae573c7
gnu: boost: Add -j for build.
* gnu/packages/boost.scm (boost)[arguments]: Add -j flag for build
phase.
2016-09-22 22:34:04 -05:00
Eric Bavier 6941965526
gnu: boost: Upgrade to 1.61.0.
* gnu/packages/boost.scm (boost): Upgrade to 1.61.0
* gnu/packages/databases.scm (mysql)[arguments]: Compute boost minor
version for substitution.
2016-09-22 22:33:37 -05:00
ng0 71b611bc34
gnu: Add ghc-transformers-0.4.2.0.
* gnu/packages/haskell.scm (ghc-transformers-0.4.2.0): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:01 -04:00
ng0 10a03d6665
gnu: Add ghc-system-fileio.
* gnu/packages/haskell.scm (ghc-system-fileio): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 23feb6e4fb
gnu: Add ghc-system-filepath.
* gnu/packages/haskell.scm (ghc-system-filepath): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 58c85b1f82
gnu: Add ghc-options.
* gnu/packages/haskell.scm (ghc-options): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 c92d944c1e
gnu: Add ghc-chell-quickcheck.
* gnu/packages/haskell.scm (ghc-chell-quickcheck): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 475d366866
gnu: Add ghc-chell-quickcheck-bootstrap.
* gnu/packages/haskell.scm (ghc-chell-quickcheck-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 8ea94489fd
gnu: Add ghc-chell.
* gnu/packages/haskell.scm (ghc-chell): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 7e06c4aa98
gnu: Add ghc-options-bootstrap.
* gnu/packages/haskell.scm (ghc-options-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 25b3bdb5ff
gnu: Add ghc-shelly.
* gnu/packages/haskell.scm (ghc-shelly): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 3f7aa1029b
gnu: Add ghc-system-fileio-bootstrap.
* gnu/packages/haskell.scm (ghc-system-fileio-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 ddd5955b1e
gnu: Add ghc-system-filepath-bootstrap.
* gnu/packages/haskell.scm (ghc-system-filepath-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 2b41f4afc1
gnu: Add ghc-lifted-async.
* gnu/packages/haskell.scm (ghc-lifted-async): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 6aab9ba6d4
gnu: Add ghc-constraints.
* gnu/packages/haskell.scm (ghc-constraints): New variable.
2016-09-22 20:09:58 -04:00
ng0 e7e2f03c8f
gnu: Add ghc-array.
* gnu/packages/haskell.scm (ghc-array): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 3db882776b
gnu: Add ghc-graphviz.
* gnu/packages/haskell.scm (ghc-graphviz): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 d4cca6b0ae
gnu: Add ghc-fgl-arbitrary.
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 ce242fd05e
gnu: ghc-fgl: Update to 5.5.3.0.
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.5.3.0.
[inputs]: Add ghc-hspec and ghc-quickcheck.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 6e0741f739
gnu: Add ghc-wl-pprint-text.
* gnu/packages/haskell.scm (ghc-wl-pprint-text): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 3b281f5b8d
gnu: Add ghc-process.
* gnu/packages/haskell.scm (ghc-process): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 4fec5cdbf4
gnu: Add ghc-directory.
* gnu/packages/haskell.scm (ghc-directory): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 e1a56bb258
gnu: Add ghc-colour.
* gnu/packages/haskell.scm (ghc-colour): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 1d9db656c9
gnu: Add ghc-bytestring.
* gnu/packages/haskell.scm (ghc-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 41167bd255
gnu: Add ghc-monads-tf.
* gnu/packages/haskell.scm (ghc-monads-tf): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 d52ca22ac3
gnu: Add ghc-patience.
* gnu/packages/haskell.scm (ghc-patience): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 027b79762a
gnu: Add ghc-findbin.
* gnu/packages/haskell.scm (ghc-findbin): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 54c37341d1
gnu: Add ghc-transformers.
* gnu/packages/haskell.scm (ghc-transformers): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 f827033102
gnu: Add ghc-tar.
* gnu/packages/haskell.scm (ghc-tar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 a71f861752
gnu: Add ghc-bytestring-handle.
* gnu/packages/haskell.scm (ghc-bytestring-handle): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 e9e519be76
gnu: Add ghc-sandi.
* gnu/packages/haskell.scm (ghc-sandi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 ab12bd3a04
gnu: Add ghc-tasty-th.
* gnu/packages/haskell.scm (ghc-tasty-th): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 fe3c62c7d5
gnu: Add ghc-regex-compat-tdfa.
* gnu/packages/haskell.scm (ghc-regex-compat-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 7e444dba6e
gnu: Add ghc-regex-tdfa.
* gnu/packages/haskell.scm (ghc-regex-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 d58dc851f9
gnu: Add ghc-regex-applicative.
* gnu/packages/haskell.scm (ghc-regex-applicative): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 1a0dbf0ded
gnu: Add ghc-haskeline.
* gnu/packages/haskell.scm (ghc-haskeline): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 7c14128dd0
gnu: Add ghc-data-ordlist.
* gnu/packages/haskell.scm (ghc-data-ordlist): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 c763b8ae89
gnu: Add ghc-cryptohash.
* gnu/packages/haskell.scm (ghc-cryptohash): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 eddc69241b
gnu: ghc-cryptonite: Update to 0.19.
* gnu/packages/haskell.scm (ghc-cryptonite): Update to 0.19.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
ng0 301e762ad1
gnu: Add ghc-binary.
* gnu/packages/haskell.scm (ghc-binary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
ng0 cc5e16a764
gnu: Add ghc-base16-bytestring.
* gnu/packages/haskell.scm (ghc-base16-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
Leo Famulari 67fa6ab5bb
gnu: imagemagick: Update to 6.9.5-10.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-10.
2016-09-22 20:09:51 -04:00
Efraim Flashner 5895f193c9
gnu: reptyr: Remove mips64el support.
* gnu/packages/screen.scm (reptyr)[supported-systems]: New field, remove
support for mips64el.
2016-09-22 22:42:47 +03:00
Efraim Flashner cda5e76f51
gnu: python2-django: Fix typo in native-inputs.
* gnu/packages/django.scm (python2-django)[native-inputs]: Inherit from
python-django's native-inputs, not its inputs.
2016-09-22 22:42:47 +03:00
Efraim Flashner 7adc698f69
gnu: python-fake-factory: Update to 0.7.2.
* gnu/packages/python.scm (python-fake-factory): Update to 0.7.2.
[arguments]: Remove phase disabling failing test.
[home-page]: Use https.
2016-09-22 22:42:46 +03:00
Efraim Flashner 0dbb7ac2df
gnu: plink: Set endian-ness on more architectures.
* gnu/packages/patches/plink-endian-detection.patch: New file.
* gnu/packages/bioinformatics.scm (plink)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-09-22 22:42:37 +03:00
John Darrington c788c5feb1
gnu: Add ytalk
* gnu/packages/messaging.scm (ytalk): New variable.
2016-09-22 21:07:33 +02:00
Leo Famulari 163d93a6bd
gnu: openssl-next: Update to 1.1.0a [security fixes].
Fixes CVE-2016-{6304,6305,6307,6308}.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0a.
[replacement]: New field.
2016-09-22 13:45:54 -04:00
Leo Famulari 50f701d4f9
gnu: openssl: Replace with 1.0.2i [security fixes].
Fixes CVE-2016-{2177,2178,2179,2180,2181,2182,2183,6302,6303,6304,6306,6308}.

* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2i): New variable.
2016-09-22 13:45:54 -04:00
Efraim Flashner 62d00095c2
gnu: prank: Allow building on 32-bit machines.
* gnu/packages/bioinformatics.scm (prank)[arguments]: Add a phase
removing the '-m64' compiler flag.
2016-09-22 19:21:16 +03:00
Mark H Weaver a143e1b877
gnu: webkitgtk: Update to 2.14.0.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.0.
2016-09-22 11:59:58 -04:00
Efraim Flashner b8367c0090
gnu: offlineimap: Update to 7.0.7.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.7.
2016-09-22 11:19:11 +03:00
Ben Woodcroft 951da521a9
gnu: diamond: Update to 0.8.22.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.22.
2016-09-22 16:36:00 +10:00
ng0 c5776c87bb
gnu: perl-io-socket-ssl: Update to 2.038.
* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.038.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 01:44:50 -04:00
Leo Famulari 1df00601b2
gnu: irssi: Update to 0.8.20 [fixes CVE-2016-{7044,7045}].
* gnu/packages/irc.scm (irssi): Update to 0.8.20.
2016-09-22 00:38:13 -04:00
Ricardo Wurmus 39162ee49b
gnu: extempore: Only build on x86_64.
* gnu/packages/algebra.scm (kiss-fft-for-extempore)[supported-systems]:
Only build on x86_64.
* gnu/packages/gl.scm (nanovg-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/image.scm (stb-image-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/llvm.scm (llvm-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/music.scm (portmidi-for-extempore)[supported-systems]:
Likewise.
(extempore)[supported-systems]: Likewise.
2016-09-21 21:47:56 +02:00
Ricardo Wurmus b78891b012
gnu: r-rmarkdown: Ensure temporary files can be deleted.
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Add phase
"copy-files-without-mode".
2016-09-21 21:38:39 +02:00
Ricardo Wurmus 3f1c722ec7
gnu: r-htmltools: Ensure temporary files can be deleted.
* gnu/packages/web.scm (r-htmltools)[arguments]: Add phase
"copy-files-without-mode".
2016-09-21 21:38:39 +02:00
Efraim Flashner 538c0e3b69
gnu: openlibm: Remove support for mips.
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
2016-09-21 22:36:52 +03:00
Efraim Flashner 6e8faf7794
gnu: jellyfish: Limit to x86_64.
* gnu/packages/bioinformatics.scm (jellyfish)[supported-systems}: New
field, limit support to x86_64.
2016-09-21 22:36:52 +03:00
ng0 f7fe5f7a3e
gnu: femtolisp: Remove custom "patch-makefile" phase.
* gnu/packages/lisp.scm (femtolisp)[arguments]: Remove
"patch-makefile" phase; specify test target; build "release"
target instead of "default".
2016-09-21 21:28:52 +02:00
Andreas Enge 171091a874
gnu: lm-sensors: Update to 3.4.0.
* gnu/packages/linux.scm (lm-sensors): Update to 3.4.0.
2016-09-21 19:20:22 +02:00
Ben Woodcroft 79558df220
gnu: vsearch: Update to 2.1.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.0.
2016-09-21 18:44:22 +10:00
Ben Woodcroft 375f224b68
gnu: python-click: Use 'pypi-uri'.
* gnu/packages/python.scm (python-click, python2-click)[source]: Use
'pypi-uri'.
2016-09-21 11:58:39 +10:00
Ben Woodcroft e2ab5a0904
gnu: python-click: Hardlink path to 'locale'.
* gnu/packages/python.scm (python-click, python2-click)[arguments]: New
field.
2016-09-21 11:54:15 +10:00
Tobias Geerinckx-Rice f75bb2c3f2
gnu: simple-scan: Update to 3.22.0.1.
* gnu/packages/gnome.scm (simple-scan): Update to 3.22.0.1.
2016-09-21 01:15:57 +02:00
Alex Vong 8824da4c8b
gnu: vlc: Use liba52.
* gnu/packages/video.scm (vlc)[inputs]: Add liba52.
[arguments]: Remove "--disable-a52" from #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 15:54:18 -04:00
Efraim Flashner c84253f757
gnu: chez-scheme: Remove arm support.
* gnu/packages/scheme.scm (chez-scheme)[supported-systems]: Remove arm.
2016-09-20 22:04:15 +03:00
doncatnip 22037a327a
gnu: awesome: Update to 3.5.9.
* gnu/packages/wm.scm (awesome): Update to 3.5.9.
[inputs]: Add gobject-introspection, lua-lgi, cairo. Use latest available lua.
[arguments]: Set lua search paths. Add cairo to LD_LIBRARY_PATH. Wrap binary in
respect to those paths plus GI_TYPELIB_PATH.
2016-09-20 14:58:33 -04:00
doncatnip 03d8505f14
gnu: lua: Add lua-lgi.
* gnu/packages/lua.scm (lua-lgi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 14:58:32 -04:00
doncatnip c0d47cadea
gnu: lua: Use MYCFLAGS instead of CFLAGS.
* gnu/packages/lua.scm (lua)[arguments]: Use MYCFLAGS instead of
CFLAGS and remove conflicting -DLUA_USE_POSIX since -DLUA_USE_LINUX
is passed implicitly for build target "linux".

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 14:58:29 -04:00
Efraim Flashner e6d58734b6
gnu: chess: Update to 6.2.3.
* gnu/packages/games.scm (chess): Update to 6.2.3.
2016-09-20 21:41:14 +03:00
Dylan Jeffers b04a52a6ff
gnu: Add python-requests-oauthlib.
* gnu/packages/python.scm (python-requests-oauthlib,
python2-requests-oauthlib): New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-20 21:27:56 +03:00
John Darrington be86b7adbc
gnu: Add bind
* gnu/packags/dns.scm (bind): New variable, (bind-utils): Remove.
2016-09-20 18:55:52 +02:00
Efraim Flashner 92330ba90d
gnu: efl: Remove hardcoding pulseaudio and libsndfile.
* gnu/packages/enlightenment.scm (efl)[arguments]: Remove custom phase
to hardlink to the locations of pulseaudio and libsndfile.
2016-09-20 11:32:08 +03:00
Mark H Weaver 846b2534df
gnu: emacs: Update to 25.1.
* gnu/packages/emacs.scm (emacs): Update to 25.1.
2016-09-19 23:45:25 -04:00
Mark H Weaver 6509a1e1e0
gnu: linux-libre: Update to 4.7.4.
* gnu/packages/linux.scm (linux-libre)
(%linux-libre-version, %linux-libre-hash): Update to 4.7.4.
2016-09-19 18:42:29 -04:00
Mark H Weaver a8b9c575aa
gnu: linux-libre@4.4: Update to 4.4.21.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.21.
2016-09-19 18:40:59 -04:00
Mark H Weaver 55ac38f986
gnu: linux-libre@4.1: Update to 4.1.33.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.33.
2016-09-19 18:37:22 -04:00
Nicolas Goaziou 006a832ccb
gnu: emacs-org: Update to 20160912.
* gnu/packages/emacs.scm (emacs-org): Update to 20160912.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-19 23:35:48 +03:00
Efraim Flashner 8120205ccd
gnu: python2-cov-core: Use strip-python2-variant.
* gnu/packages/python.scm (python-cov-core)[properties]: New field,
declare python2-variant.
(python2-cov-core): Use strip-python2-variant.
2016-09-19 23:25:01 +03:00
Leo Famulari d404a6f971
gnu: gnupg: Fix test failure.
* gnu/packages/patches/gnupg-fix-expired-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg): Use it.
2016-09-19 16:09:56 -04:00
Hartmut Goebel dfdaea32e9
gnu: python-django, python2-django: Fix propagated- and native-inputs.
setuptools is a run-time dependency (sic!), all others are required
for testing only.

* gnu/packages/django.scm (python-django) [propagated-inputs,
  native-inputs]: Exchange them. Move tzdata to new native-inputs.
  Enhance comments.
  (python2-django) [propagated-inputs] change into native-inputs.
  Enhance comment.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-19 23:41:23 +09:00
Efraim Flashner bf307a7a54
gnu: efl: Add recommended build flags.
* gnu/packages/enlightenment.scm (efl)[inputs]: Add libwebp.
[arguments]: Add configure-flags to enable xinput22, image-loader-webp,
multisense, opengl with egl support.
2016-09-19 15:46:34 +03:00
Efraim Flashner 5de2a99e79
gnu: efl: Update to 1.18.1.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.1.
2016-09-19 15:46:33 +03:00
Efraim Flashner 6f27fbd807
gnu: ffmpeg@2.8: Update to 2.8.8.
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.8.
2016-09-19 15:46:26 +03:00
宋文武 6b87c10f58
gnu: Add Mr. Rescue.
* gnu/packages/games.scm (mrrescue): New variable.
2016-09-19 19:24:18 +08:00
Roel Janssen eb24341ffb
gnu: Add r-biocinstaller.
* gnu/packages/bioinformatics.scm (r-biocinstaller): New variable.
2016-09-19 11:56:44 +02:00
ng0 c2c84add54
gnu: racket: Update to 6.6
* gnu/packages/scheme.scm (racket): Update to 6.6.
2016-09-19 11:53:30 +02:00
Ben Woodcroft de96ea286d
gnu: python-biom-format: Move inputs to propagated-inputs.
* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format)
[inputs]: Move all from here ...
[propagated-inputs]: ... to here.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 7bba95b769
gnu: seqmagick: Use BioPython 1.66.
* gnu/packages/bioinformatics.scm (seqmagick)[inputs]: Use
python2-biopython-1.66 instead of python2-biopython.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 4b1a152826
gnu: Add python2-biopython-1.66.
* gnu/packages/bioinformatics.scm (python2-biopython-1.66): New variable.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 8c8da1389e
gnu: python-biopython: Use 'python2-variant'.
* gnu/packages/bioinformatics.scm (python-biopython)[properties]: New field.
[native-inputs]: Remove field.
(python-biopython): Use 'strip-python-variant'.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 4ce6030588
gnu: python-biopython: Update to 1.68.
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.68.
[arguments]: New field.
2016-09-19 15:44:18 +10:00
Nicolas Goaziou ded5d02bd0
gnu: wireshark: Update to 2.2.0.
* gnu/packages/networking.scm (wireshark): Update to 2.2.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-18 21:03:48 -04:00
Efraim Flashner c4605e4c97
gnu: onionshare: Fix build.
This commit is a follow-up to b8ea5204ab.

* gnu/packages/tor.scm: Add 'gpl3+' to guix-licenses import, Add
python-build-system.
(onionshare)[licenses]: Remove license namespace.
2016-09-18 23:27:36 +03:00
Efraim Flashner b8ea5204ab
gnu: Add onionshare.
* gnu/packages/tor.scm (onionshare): New variable.
* gnu/packages/patches/onionshare-fix-install-paths.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-18 23:19:46 +03:00
Efraim Flashner d488d5d65b
gnu: Add python-nautilus.
* gnu/packages/python.scm (python-nautilus): New variable.
2016-09-18 23:19:46 +03:00
Efraim Flashner 153e58c568
gnu: Add python-bcrypt.
* gnu/packages/password-utils.scm (python-bcrypt): New variable.
2016-09-18 23:19:46 +03:00
Efraim Flashner 0aea283a65
gnu: Add python-nose2.
* gnu/packages/python.scm (python-nose2): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 12f839fdf6
gnu: Add python-cov-core.
* gnu/packages/python.scm (python-cov-core): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 257023978a
gnu: Add python-consul.
* gnu/packages/python.scm (python-consul): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner ddc63a5611
gnu: Add python-graphene.
* gnu/packages/python.scm (python-graphene): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 894810c7c9
gnu: Add python-django-filter.
* gnu/packages/django.scm (python-django-filter): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 23b563dcfd
gnu: Add python-pytest-django.
* gnu/packages/django.scm (python-pytest-django): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner de2966cfe8
gnu: Add python-sqlalchemy-utils.
* gnu/packages/python.scm (python-sqlalchemy-utils): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 7ee5157579
gnu: Add python-graphql-relay.
* gnu/packages/python.scm (python-graphql-relay): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 05b7a59336
gnu: Add python-graphql-core.
* gnu/packages/python.scm (python-graphql-core): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 44547e5153
gnu: Add python-pytest-mock.
* gnu/packages/python.scm (python-pytest-mock): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 5cb2fe446b
gnu: Add python-promise.
* gnu/packages/python.scm (python-promise): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 4d98bfaf23
gnu: Add python-peewee.
* gnu/packages/databases.scm (python-peewee): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 4d3fa5a421
gnu: Add python-pika.
* gnu/packages/python.scm (python-pika): New variable.
2016-09-18 23:19:43 +03:00
Efraim Flashner bff8be80c9
gnu: xorriso: Update to 1.4.6.
* gnu/packages/cdrom.scm (xorriso): Update to 1.4.6.
2016-09-18 23:14:02 +03:00
Efraim Flashner 0bb9461506
gnu: autoconf-archive: Update to 2016.09.16.
* gnu/packages/autotools.scm (autoconf-archive): Update to 2016.09.16.
2016-09-18 18:10:10 +03:00
John Darrington e4360e16f9
gnu: gtk+ use modify-phases
* gnu/packages/gtk.scm (arguments): Replace alist-cons-before with modify-phases
2016-09-18 14:42:26 +02:00
John Darrington 5d87088c39
gnu: Add sendmail
* gnu/packages/mail.scm (sendmail): New variable.
2016-09-18 09:40:44 +02:00
Stefan Reichoer 4efb9c5478
gnu: Add python-glances.
* gnu/packages/python.scm (python-glances, python2-glances): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-17 19:17:54 -04:00
Leo Famulari 082138e953
gnu: diffoscope: Update to 60.
* gnu/packages/package-management.scm (diffoscope): Update to 60.
2016-09-17 19:02:42 -04:00
Rene Saavedra 6aeaba8917
gnu: gnome-session: Update to 3.20.2.
* gnu/packages/gnome.scm (gnome-session): Update to 3.20.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-17 17:01:00 -04:00
John Darrington 8f65585b14
doc: "filesystem" -> "file system"
* doc/guix.texi: "filesystem" -> "file system"
* gnu/packages/admin.scm: "filesystem" -> "file system"
* gnu/packages/cdrom.scm: "filesystem" -> "file system"
* gnu/packages/compression.scm: "filesystem" -> "file system"
* gnu/packages/disk.scm: "filesystem" -> "file system"
* gnu/packages/gnome.scm: "filesystem" -> "file system"
* gnu/packages/irc.scm: "filesystem" -> "file system"
* gnu/packages/linux.scm: "filesystem" -> "file system"
* gnu/packages/mail.scm: "filesystem" -> "file system"
* gnu/packages/mpd.scm: "filesystem" -> "file system"
* gnu/packages/ocaml.scm: "filesystem" -> "file system"
* gnu/packages/perl.scm: "filesystem" -> "file system"
* gnu/packages/python.scm: "filesystem" -> "file system"
* gnu/packages/search.scm: "filesystem" -> "file system"
* gnu/packages/tls.scm: "filesystem" -> "file system"
* gnu/services/mail.scm: "filesystem" -> "file system"
2016-09-16 18:16:13 +02:00
Ricardo Wurmus 9159562441
gnu: Add Extempore.
* gnu/packages/music.scm (extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 38098bf7b4
gnu: Add portmidi-for-extempore.
* gnu/packages/music.scm (portmidi-for-extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 2a9b10c7cd
gnu: Add kiss-fft-for-extempore.
* gnu/packages/algebra.scm (kiss-fft-for-extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 921cb13a96
gnu: Add llvm-for-extempore.
* gnu/packages/llvm.scm (llvm-for-extempore): New variable.
* gnu/packages/patches/llvm-for-extempore.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus ac2a38a59a
gnu: Add stb-image-for-extempore.
* gnu/packages/image.scm (stb-image-for-extempore): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus 5a82f933f3
gnu: Add assimp.
* gnu/packages/graphics.scm (assimp): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus 78acbcb53f
gnu: Add nanovg-for-extempore.
* gnu/packages/gl.scm (nanovg-for-extempore): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus c533589c66
gnu: Add r-e1071.
* gnu/packages/statistics.scm (r-e1071): New variable.
2016-09-16 17:29:48 +02:00
Ricardo Wurmus c72c12491a
gnu: Add r-rtsne.
* gnu/packages/statistics.scm (r-rtsne): New variable.
2016-09-16 17:29:48 +02:00
Brendan Tildesley f6875394a6
gnu: Add par2cmdline.
* gnu/packages/backup.scm (par2cmdline): New variable.
2016-09-15 22:39:31 -05:00
Tobias Geerinckx-Rice 7f39e13180
gnu: prosody: Don't generate example SSL certificates.
They are non-deterministic and of questionable utility.

* gnu/packages/messaging.scm (prosody)[arguments]: Add #:configure-flags.
2016-09-16 01:54:00 +02:00
Tobias Geerinckx-Rice 9bd259d82d
gnu: polipo: Use 'modify-phases'.
* gnu/packages/web.scm (polipo)[arguments]: Use 'modify-phases'.
2016-09-16 01:54:00 +02:00
Tobias Geerinckx-Rice 60880ac556
gnu: iodine: Use net-tools' ifconfig with an absolute path.
* gnu/packages/networking.scm (iodine)[arguments]: Add fix-ifconfig-path
phase.
[inputs]: Add net-tools.
2016-09-16 01:53:51 +02:00
Tobias Geerinckx-Rice 71af71dc74
gnu: hexchat: Update to 2.12.1.
* gnu/packages/messaging.scm (hexchat): Update to 2.12.1.
[inputs]: Add luajit.
[description]: Wrap to <=80 characters.
2016-09-16 01:49:13 +02:00
Tobias Geerinckx-Rice dd65f3b744
gnu: Add mcelog.
* gnu/packages/linux.scm (mcelog): New variable.
2016-09-16 01:49:13 +02:00
David Craven 25847b327e
gnu: kernel-config: Find configuration file for i686.
* gnu/packages/linux.scm (kernel-config): Find configuration file for
  i686.
  (make-linux-libre)[origin]: Apply patch correctly.
2016-09-15 21:57:51 +02:00
Ludovic Courtès 4a187c556d
gnu: chibi-scheme: Use 'modify-phases'.
* gnu/packages/scheme.scm (chibi-scheme)[arguments]: Use
'modify-phases'.
2016-09-15 18:56:41 +02:00
Arun Isaac 797a5cf57f
gnu: Add darkhttpd.
* gnu/packages/web.scm (darkhttpd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-15 11:23:01 -04:00
Vincent Legoll d002121b5e
gnu: nss-certs and nss: Update to 3.26
* gnu/packages/certs.scm (nss-certs): Update to 3.26.
* gnu/packages/gnuzilla.scm (nss): Update to 3.26.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-15 09:43:09 -04:00
宋文武 ab179eaf98
gnu: Add gnome-dictionary.
* gnu/packages/gnome.scm (gnome-dictionary): New variable.
2016-09-15 15:48:26 +08:00
Marius Bakke 5467ea6200
gnu: Add python-natsort.
* gnu/packages/python.scm (python-natsort, python2-natsort): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:56:02 -04:00
Marius Bakke df94a6b57d
gnu: Add python-pytest-flakes.
* gnu/packages/python.scm (python-pytest-flakes, python2-pytest-flakes):
  New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:56:02 -04:00
Marius Bakke 66f95b209a
gnu: Add python-pytest-pep8.
* gnu/packages/python.scm (python-pytest-pep8, python2-pytest-pep8): New
  variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:55:58 -04:00
ng0 74c0282c45
gnu: Add mhonarc.
* gnu/packages/mail.scm (mhonarc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 17:32:07 -04:00
ng0 991847748a
gnu: gnurl: Update to 7.50.3.
* gnu/packages/gnunet.scm (gnurl): Update to 7.50.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 16:38:08 -04:00
Jan Nieuwenhuizen 253745d756
gnu: hydra: Update to 20151030.1ff48da.
* gnu/packages/ci.scm (hydra): Update to 20151030.1ff48da (fixes building with
nix-1.11.x).
[source]: Remove 'hydra-automake-1.15.patch'.
[inputs]: Add libpqxx and perl-net-statsd.
* gnu/packages/patches/hydra-automake-1.15.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:07 -04:00
Jan Nieuwenhuizen fe71eee076
gnu: Add libpqxx.
* gnu/packages/databases.scm (libpqxx): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 16c6a01e3f
gnu: Add perl-net-statsd.
* gnu/packages/perl.scm (perl-net-statsd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 49735d8de1
gnu: perl-image-magick: Disable tests.
* gnu/packages/imagemagick.scm (perl-image-magick)[arguments]: Add #:tests?.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 2792a6b470
gnu: perl-gd: Disable tests.
* gnu/packages/gd.scm (perl-gd)[arguments]: Add #:tests?.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:02 -04:00
Efraim Flashner 6ea541e016
gnu: links: Use 'modify-phases'.
* gnu/packages/links.scm (links)[arguments]: Use 'modify-phases'.
2016-09-14 22:04:50 +03:00
Efraim Flashner 7ddacf88ef
gnu: links: Update to 2.13.
* gnu/packages/links.scm (links): Update to 2.13.
2016-09-14 22:02:40 +03:00
Leo Famulari 2a0ed3254b
gnu: curl: Update replacement to 7.50.3 [fixes CVE-2016-7167].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.50.3.
(curl-7.50.2): Replace with ....
(curl-7.50.3): ... this.
2016-09-14 14:12:04 -04:00
Leo Famulari b5b2c11b5e
gnu: mariadb: Update to 10.1.17 [fixes CVE-2016-6662 ].
* gnu/packages/databases.scm (mariadb): Update to 10.1.17.
2016-09-14 13:52:19 -04:00
Leo Famulari 362bc747a2
gnu: mysql: Update to 5.7.15 [fixes CVE-2016-6662].
* gnu/packages/databases.scm (mysql): Update to 5.7.15.
[source]: Remove obsolete 'mysql-fix-failing-test.patch'.
* gnu/packages/patches/mysql-fix-failing-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-09-14 13:52:18 -04:00
David Thompson ddda5338b8
gnu: guile-next: Update to 2.1.4.
* gnu/packages/guile.scm (guile-next): Update to 2.1.4.
2016-09-14 11:14:47 -04:00
Christopher Baines 8bebe734ca
gnu: Add emacs-es-mode.
* gnu/packages/emacs.scm (emacs-es-mode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-14 16:36:38 +02:00
Tobias Geerinckx-Rice 271447ff8e
gnu: Remove unused, obsolete, private rlog.
* gnu/packages/crypto.scm (rlog): Remove variable.
2016-09-14 13:02:53 +02:00
Tobias Geerinckx-Rice b6f87ec003
gnu: encfs: Update to 1.9.
* gnu/packages/crypto.scm (encfs): Update to 1.9.
[source]: Remove bundled TinyXML2 in a snippet.
[build-system]: Switch to cmake-build-system.
[arguments]: Remove autotools-related phases and configure-flags.
Don't use bundled TinyXML2. Move under *inputs.
[native-inputs]: Remove autoconf, automake, libtool, and pkg-config.
Add expect.
[inputs]: Remove boost and rlog, while adding attr and tinyxml2.
[license]: Add expat licence for new easylogging++.h file.
2016-09-14 13:02:53 +02:00
Tobias Geerinckx-Rice 931bd7f6ce
gnu: Add tinyxml2.
* gnu/packages/xml.scm (tinyxml2): New variable.
2016-09-14 13:02:53 +02:00
Christopher Baines 76f31f0b2c
gnu: Add direnv.
* gnu/packages/shellutils.scm (direnv): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-09-14 15:47:19 +08:00
Ricardo Wurmus 85313be89d
gnu: Add guile2.2-redis.
* gnu/packages/guile.scm (guile2.2-redis): New variable.
2016-09-14 09:01:26 +02:00
Ricardo Wurmus ea833d301b
gnu: guile-redis: Remove hard-coded Guile effective version.
* gnu/packages/guile.scm (guile-redis)[snippet]: Modify 'ac_subst_vars'
in 'configure', and use "@GUILE_EFFECTIVE_VERSION@" instead of "2.0" in
'Makefile.in'.
2016-09-14 09:01:21 +02:00
David Craven d6feaf6e8f
gnu: kernel-config: Remove redundant file-exists? check.
* gnu/packages/linux.scm (kernel-config): Remove redundant file-exists?
  check.
2016-09-13 22:48:00 +02:00
David Craven 0b75986983
gnu: make-linux-libre: Only use configuration-file when one is provided.
* gnu/packages/linux.scm (make-linux-libre): Only use configuration-file
  when one is provided.
2016-09-13 22:48:00 +02:00
ng0 995e5092d8
gnu: Add femtolisp.
* gnu/packages/lisp.scm (femtolisp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 15:38:00 -04:00
Danny Milosavljevic 812b3c1f8a
gnu: ldc: Fix build failure.
* gnu/packages/ldc.scm (ldc)[arguments]: Add 'patch-dmd2' phase.
[inputs]: Add zlib.
[native-inputs]: Specify version 3.7 of LLVM and Clang.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 15:24:55 -04:00
John Darrington f26dd9b2cc
gnu: Add microcom
* gnu/packages/microcom.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-09-13 21:05:13 +02:00
David Craven 035d359338
gnu: module-init-tools: Move to (gnu packages linux).
* gnu/packages/linux.scm (module-init-tools): Move.
2016-09-13 21:01:27 +02:00
David Craven cff0adec0c
gnu: libnfsidmap: Move to (gnu packages linux).
* gnu/packages/linux.scm (libnfsidmap): Move.
2016-09-13 21:01:27 +02:00
David Craven de459dc095
gnu: Add linux-libre-beagle-bone-black.
* gnu/packages/linux.scm (linux-libre-beagle-bone-black): New variable.
2016-09-13 21:01:27 +02:00
David Craven cde7c23f15
gnu: Add linux-libre-arm-generic.
* gnu/packages/linux.scm (linux-libre-arm-generic): New variable.
2016-09-13 21:01:27 +02:00
David Craven 78edccccaf
gnu: linux-libre: Use kmod.
* gnu/packages/linux.scm (make-linux-libre): Use kmod.
2016-09-13 21:01:27 +02:00
David Craven 3129b9c2b1
gnu: make-linux-libre: Add supported-systems parameter.
* gnu/packages/linux.scm (make-linux-libre): Add supported-systems
  parameter.
2016-09-13 21:01:27 +02:00
David Craven fd6e0de3c0
gnu: make-linux-libre: Add zImage to output.
* gnu/packages/linux.scm (make-linux-libre): Add zImage to output.
2016-09-13 21:01:27 +02:00
David Craven a6d0132514
gnu: make-linux-libre: Add extra-version parameter.
* gnu/packages/linux.scm (make-linux-libre): Add extra-version option.
2016-09-13 21:01:27 +02:00
David Craven 90c18c321e
gnu: make-linux-libre: Add extra-options parameter.
* gnu/packages/linux.scm (linux-libre): Use
  %default-extra-linux-options.
  (config->string, %default-extra-linux-options): New variables.
2016-09-13 21:01:27 +02:00
David Craven c258807a85
gnu: Use make-linux-libre.
* gnu/packages/linux.scm (make-linux-libre): New variable.
  (linux-libre, linux-libre-4.4, linux-libre-4.1): Use make-linux-libre.
  (kernel-config): Take arch instead of system.
2016-09-13 21:01:27 +02:00
ng0 0a1d8596fd
gnu: lispf4: Remove unused inputs key.
* gnu/packages/lisp.scm (lispf4)[arguments]: Remove unused
inputs key from 'install' phase.
[source](file-name): Append "-checkout" to the file-name.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 15:00:02 -04:00
David Craven 8feb56b0d4
gnu: u-boot-vexpress_ca9x4: Rename to u-boot-vexpress.
* gnu/packages/u-boot.scm (u-boot-vexpress_ca9x4): Rename.
2016-09-13 19:04:43 +02:00
David Craven 20f9c6764c
gnu: Add u-boot-beagle-bone-black.
* gnu/packages/u-boot.scm (u-boot-beagle-bone-black): New variable.
2016-09-13 19:04:43 +02:00
Danny Milosavljevic e42a0771b7
gnu: dtc: Remove patch-paths phase.
* gnu/packages/u-boot.scm (dtc)[arguments]: Remove patch-paths phase.
  [configure-flags]: Add INSTALL.

Signed-off-by: David Craven <david@craven.ch>
2016-09-13 19:04:43 +02:00
Danny Milosavljevic 243db8245e
gnu: Add python-lit, python2-lit.
* gnu/packages/python.scm (python-lit, python2-lit): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 12:41:44 -04:00
Tobias Geerinckx-Rice d15e2ef05a
gnu: python-prompt-toolkit: Update to 1.0.7.
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.7.
[source]: Use 'pypi-uri'.
2016-09-13 17:03:42 +02:00
Tobias Geerinckx-Rice c033c1958d
gnu: ruby: Remove string-append call with single argument.
* gnu/packages/ruby.scm (ruby)[source]: Remove string-append.
2016-09-13 16:48:44 +02:00
Tobias Geerinckx-Rice 05077200f7
gnu: tinyxml: Fix typo in description.
* gnu/packages/xml.scm (tinyxml)[description]: Fix typo.
2016-09-13 16:48:44 +02:00
David Craven 4b42703ed5
gnu: linux-libre: Add support for cross-compilation.
* gnu/packages/linux.scm (linux-libre): Add support for
  cross-compilation.
2016-09-13 16:45:41 +02:00
David Craven 9416459b72
gnu: linux-libre: Move kernel configuration to configure phase.
* gnu/packages/linux.scm (linux-libre)[arguments]: Add configure phase.
2016-09-13 16:45:41 +02:00
David Craven 499fb7e0ba
gnu: linux-libre: Apply %boot-logo patch in origin.
* gnu/packages/linux.scm (linux-libre)[origin]: Apply %boot-logo patch
  in origin.
2016-09-13 16:45:41 +02:00
David Craven 6d7ef2aad2
gnu: linux-libre: Use system->architecture.
* gnu/packages/linux.scm (linux-libre): Use system->architecture.
2016-09-13 16:45:41 +02:00
David Craven 614d1738e2
gnu: linux-libre: Use modify-phases.
* gnu/packages/linux.scm (linux-libre): Use modify-phases.
2016-09-13 16:45:41 +02:00
David Craven 885009c5b9
gnu: module-init-tools: Prevent line wrapping.
* gnu/packages/linux.scm (module-init-tools): Break line.
2016-09-13 16:45:41 +02:00
Kei Kebreau 89bcf3fcc9
gnu: Add schismtracker.
* gnu/packages/music.scm (schismtracker): New variable.
2016-09-13 10:31:40 -04:00
Alex ter Weele 23de5cbd14
gnu: guile-wm: Add '.desktop' file.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Add
'install-xsession' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-13 14:01:27 +02:00
Ben J Woodcroft 66daf78c0a
gnu: Add seqtk.
* gnu/packages/bioinformatics.scm (seqtk): New variable.
2016-09-13 20:27:29 +10:00
Andy Patterson 6c0cd765c0
gnu: libbluray: Enable libaacs and libbdplus support.
* gnu/packages/video.scm (libbluray) [inputs]: Add libaacs and
libbdplus.
[arguments]: Add 'fix-dlopen-paths' to #:phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-13 10:26:35 +02:00
Andy Patterson 8dd6fc5164
gnu: Add libaacs.
* gnu/packages/video.scm (libaacs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-13 10:26:35 +02:00
Andy Patterson 4df0762248
gnu: Add libbdplus.
* gnu/packages/video.scm (libbdplus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-13 10:26:35 +02:00
Marius Bakke 4fba38db9c
gnu: dlib: Disable failing tests.
* gnu/packages/machine-learning.scm (dlib)[arguments]: Add phase
'disable-failing-tests' for tests that are known not to work in the current
release.
[inputs]: Add lapack.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
Marius Bakke 8eaf53e366
gnu: dlib: Do not build dlib twice for tests.
* gnu/packages/machine-learning.scm (dlib)[arguments]: Use makefile
instead of cmake in check phase to prevent full rebuild.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
Marius Bakke f40841e999
gnu: dlib: Remove unused fftw from inputs.
* gnu/packages/machine-learning.scm (dlib)[inputs]: Remove fftw.
(define-module): Don't include algebra.scm.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
Ivan Vilata-i-Balaguer d2262d7052
gnu: python-py3status: Update to 3.1.
* gnu/packages/python.scm (python-py3status): Update to 3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-12 16:48:44 -04:00
Efraim Flashner 4f6ec7e800
gnu: youtube-dl: Update to 2016.09.11.1.
* gnu/packages/video.scm (youtube-dl): Update to 2016.09.11.1.
2016-09-12 22:34:24 +03:00
Efraim Flashner f34365b53e
gnu: mpv: Remove extra input.
* gnu/packages/video.scm (mpv)[inputs]: Remove vapoursynth.
2016-09-12 22:31:15 +03:00
Efraim Flashner 9a078f4863
gnu: vapoursynth: Remove mips support.
* gnu/packages/video.scm (vapoursynth)[supported-systems]: New field,
remove support for mips64el which is unsupported.
2016-09-12 22:29:35 +03:00
Efraim Flashner f51940b0f5
gnu: vim: Make builds bit-reproducable.
* gnu/packages/vim.scm (vim)[arguments]: Remove the compiled date.
2016-09-12 21:54:05 +03:00
Efraim Flashner db3cc007e3
gnu: vim: Update to 8.0.
* gnu/packages/vim.scm (vim): Update to 8.0.
[arguments]: Update files which need /bin/sh patched.
2016-09-12 21:54:04 +03:00
Leo Famulari 2642231b39
gnu: bowtie: Update to 2.2.9.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.9.
2016-09-12 14:19:37 -04:00
Leo Famulari d8a1be6328
gnu: certbot: Improve synopsis.
* gnu/packages/tls.scm (certbot)[synopsis]: Add authorship information.
2016-09-12 13:05:42 -04:00
Leo Famulari 0581c273a4
gnu: Add acme-client.
* gnu/packages/tls.scm (acme-client): New variable.
2016-09-12 13:05:42 -04:00
Leo Famulari 974e2b2971
gnu: gnutls: Replace with 3.5.4 [fixes GNUTLS-SA-2016-3].
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls-3.5.4): New variable.
2016-09-12 12:30:33 -04:00
John Darrington e9aba1ea33
gnu: Add nfs-utils
* gnu/packages/nfs.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-09-12 18:17:57 +02:00
Ricardo Wurmus d108c21228
gnu: r-org-mm-eg-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.3.0.
2016-09-12 17:44:49 +02:00
Ricardo Wurmus 6ab7ca24f2
gnu: r-org-dm-eg-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 019be09060
gnu: r-org-ce-eg-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 5cc7cff6ef
gnu: r-org-hs-eg-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 401528b2b5
gnu: r-go-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 87a7c55ebd
gnu: r-rmarkdown: Update to 1.0.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.0.
[propagated-inputs]: Add "r-jsonlite" and "r-base64enc".
2016-09-12 17:44:48 +02:00
Ricardo Wurmus de1eebd7d7
gnu: r-dplyr: Update to 0.5.0.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.5.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
2016-09-12 17:44:47 +02:00
Ricardo Wurmus 1b7f85f52d
gnu: r-tidyr: Update to 0.6.0.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.0.
2016-09-12 17:44:47 +02:00
Ricardo Wurmus c3253ce1b5
gnu: r-irlba: Update to 2.1.1.
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.1.
2016-09-12 17:44:47 +02:00
Ricardo Wurmus f791b689b2
gnu: r-dt: Update to 0.2.
* gnu/packages/statistics.scm (r-dt): Update to 0.2.
2016-09-12 17:44:47 +02:00
Ricardo Wurmus 7931531a23
gnu: r-sparsem: Update to 1.72.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.72.
2016-09-12 17:44:47 +02:00
Ricardo Wurmus b9ab3b08b8
gnu: r-lambda-r: Update to 1.1.9.
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.1.9.
2016-09-12 17:44:47 +02:00
Ricardo Wurmus 27f10d3db2
gnu: r-futile-logger: Update to 1.4.3.
* gnu/packages/statistics.scm (r-futile-logger): Update to 1.4.3.
2016-09-12 17:44:46 +02:00
Ricardo Wurmus fce4dfd82e
gnu: r-lattice: Update to 0.20-34.
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-34.
2016-09-12 17:44:46 +02:00
Ricardo Wurmus bdfc2c954e
gnu: r-plotrix: Update to 3.6-3.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-3.
2016-09-12 17:44:46 +02:00
Ricardo Wurmus 8c6e2b843e
gnu: r-readr: Update to 1.0.0.
* gnu/packages/statistics.scm (r-readr): Update to 1.0.0.
[propagated-inputs]: Add "r-hms", "r-tibble", and "r-r6".
2016-09-12 17:44:46 +02:00
Ricardo Wurmus b90314b4f8
gnu: Add r-hms.
* gnu/packages/statistics.scm (r-hms): New variable.
2016-09-12 17:44:46 +02:00
Ricardo Wurmus a589acfb08
gnu: Add r-tibble.
* gnu/packages/statistics.scm (r-tibble): New variable.
2016-09-12 17:44:46 +02:00
Ricardo Wurmus 348bb8d663
gnu: r-withr: Update to 1.0.2.
* gnu/packages/statistics.scm (r-withr): Update to 1.0.2.
2016-09-12 17:44:45 +02:00
Ricardo Wurmus 3bb9708a7f
gnu: r-devtools: Update to 1.12.0.
* gnu/packages/statistics.scm (r-devtools): Update to 1.12.0.
2016-09-12 17:44:45 +02:00
Ricardo Wurmus e2cfac445e
gnu: r-rstudioapi: Update to 0.6.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.6.
2016-09-12 17:44:45 +02:00
Ricardo Wurmus e58498b6ee
gnu: r-httr: Update to 1.2.1.
* gnu/packages/statistics.scm (r-httr): Update to 1.2.1.
2016-09-12 17:44:45 +02:00
Ricardo Wurmus 130c3c8b93
gnu: r-openssl: Update to 0.9.4.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.4.
2016-09-12 17:44:45 +02:00
Ricardo Wurmus 81147fe886
gnu: r-rversions: Update to 1.0.3.
* gnu/packages/statistics.scm (r-rversions): Update to 1.0.3.
2016-09-12 17:44:45 +02:00
Ricardo Wurmus 03306201a7
gnu: r-multitaper: Update to 1.0-12.
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-12.
2016-09-12 17:44:45 +02:00
Ricardo Wurmus e2ad0228fc
gnu: r-xml2: Update to 1.0.0.
* gnu/packages/statistics.scm (r-xml2): Update to 1.0.0.
2016-09-12 17:44:44 +02:00
Ricardo Wurmus ef82bd5888
gnu: r-r6: Update to 2.1.3.
* gnu/packages/statistics.scm (r-r6): Update to 2.1.3.
2016-09-12 17:44:44 +02:00
Ricardo Wurmus 344d5323d6
gnu: r-crayon: Update to 1.3.2.
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.2.
2016-09-12 17:44:44 +02:00
Ricardo Wurmus ad28491e12
gnu: r-knitr: Update to 1.14.
* gnu/packages/statistics.scm (r-knitr): Update to 1.14.
2016-09-12 17:44:44 +02:00
Ricardo Wurmus 2d037a2d68
gnu: r-mime: Update to 0.5.
* gnu/packages/statistics.scm (r-mime): Update to 0.5.
2016-09-12 17:44:44 +02:00
Ricardo Wurmus 5b67bd6e8f
gnu: r-dbi: Update to 0.5-1.
* gnu/packages/statistics.scm (r-dbi): Update to 0.5-1.
2016-09-12 17:44:43 +02:00
Ricardo Wurmus 6d6a917a16
gnu: r-lazyeval: Update to 0.2.0.
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.0.
2016-09-12 17:44:43 +02:00
Ricardo Wurmus bf1e9e4517
gnu: r-stringr: Update to 1.1.0.
* gnu/packages/statistics.scm (r-stringr): Update to 1.1.0.
2016-09-12 17:44:43 +02:00
Ricardo Wurmus 1f94ede8ea
gnu: r-stringi: Update to 1.1.1.
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.1.
2016-09-12 17:44:43 +02:00
Ricardo Wurmus deb265a7b3
gnu: r-plyr: Update to 1.8.4.
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.4.
2016-09-12 17:44:43 +02:00
Ricardo Wurmus 8b2f96e73a
gnu: r-permute: Update to 0.9-4.
* gnu/packages/statistics.scm (r-permute): Update to 0.9-4.
2016-09-12 17:44:43 +02:00
Ricardo Wurmus 21f45c9d9e
gnu: r-mgcv: Update to 1.8-14.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-14.
2016-09-12 17:44:42 +02:00
Ricardo Wurmus cb27d6ba4e
gnu: r-rcpp: Update to 0.12.7.
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.7.
2016-09-12 17:44:42 +02:00
Ricardo Wurmus 5aaa12dfb5
gnu: r-digest: Update to 0.6.10.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.10.
2016-09-12 17:44:42 +02:00
Ricardo Wurmus 44f711dbe6
gnu: r-biocparallel: Update to 1.6.6.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.6.
2016-09-12 17:44:42 +02:00
Ricardo Wurmus 10e479a7c0
gnu: r-genomicranges: Update to 1.24.3.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.3.
2016-09-12 17:44:42 +02:00
Ricardo Wurmus 01ebbb1b76
gnu: r-limma: Update to 3.28.21.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.21.
2016-09-12 17:44:42 +02:00
Ricardo Wurmus bbf53cb527
gnu: r-variantannotation: Update to 1.18.7.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.7.
2016-09-12 17:44:42 +02:00
Ricardo Wurmus 4fa7091d54
gnu: r-genomeinfodb: Update to 1.8.7.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.7.
2016-09-12 17:44:41 +02:00
Ricardo Wurmus 3b851cd4ac
gnu: r-seqinr: Update to 3.3-1.
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-1.
[propagated-inputs]: Add "r-segmented".
2016-09-12 17:44:41 +02:00
Ricardo Wurmus 3e4c0c6662
gnu: Add r-segmented.
* gnu/packages/statistics.scm (r-segmented): New variable.
2016-09-12 17:44:41 +02:00
Ricardo Wurmus 2b1cc79d98
gnu: r-s4vectors: Update to 0.10.3.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.3.
2016-09-12 17:44:41 +02:00
Ricardo Wurmus 0b54b4c986
gnu: r-acsnminer: Update to 0.16.8.25.
* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.8.25.
2016-09-12 17:44:41 +02:00
Ricardo Wurmus 2c575bb9a2
gnu: r-vegan: Update to 2.4-1.
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-1.
2016-09-12 17:44:40 +02:00
Ricardo Wurmus 02a87536bf
gnu: r-curl: Update to 1.2.
* gnu/packages/web.scm (r-curl): Update to 1.2.
2016-09-12 17:44:40 +02:00
Ricardo Wurmus cc1446acc7
gnu: r-htmlwidgets: Update to 0.7.
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.7.
2016-09-12 17:44:40 +02:00
Ricardo Wurmus 4df0cb8d05
gnu: r-jsonlite: Update to 1.0.
* gnu/packages/web.scm (r-jsonlite): Update to 1.0.
2016-09-12 17:44:40 +02:00
Ricardo Wurmus ccd9b1511e
gnu: r-pracma: Update to 1.9.5.
* gnu/packages/maths.scm (r-pracma): Update to 1.9.5.
[propagated-inputs]: Add "r-quadprog".
2016-09-12 17:44:40 +02:00
Ricardo Wurmus 2d047896f9
gnu: Add r-quadprog.
* gnu/packages/maths.scm (r-quadprog): New variable.
2016-09-12 17:44:40 +02:00
John Darrington 39fb629535
gnu: (cfitsio, wcslib): Change return values of custom phases.
* gnu/packages/astronomy.scm (cfitsio, wcslib): Return #t from patch phases.
2016-09-12 17:35:03 +02:00
Andreas Enge 378920defc
gnu: python-django: Add patch file.
* gnu/packages/patches/python-django-fix-testcase.patch: New file.

This is a follow-up to commit d18197af78.
2016-09-12 17:27:33 +02:00
Marius Bakke ac8a642886
gnu: tre: Move to (gnu packages regex).
* gnu/packages/tre.scm: Remove.  Move 'tre' to...
* gnu/packages/regex.scm (tre): ... here.  New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-09-12 16:38:03 +03:00
ng0 f32ffa04ba
gnu: emacs: Use https for elpa.gnu.org.
* gnu/packages/emacs.scm: Use 'https' for all elpa.gnu.org URLs.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-09-12 16:38:03 +03:00
Hartmut Goebel b53fc2940f
gnu: Add python-django-simple-math-captcha.
* gnu/packages/django.scm: (python-django-simple-math-captcha)
(python2-django-simple-math-captcha): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-12 15:27:46 +02:00
Hartmut Goebel d18197af78
gnu: Add python-django.
* gnu/packages/django.scm: New file.
* gnu/packages/patches/python-django-fix-testcase.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add django.scm.
(dist_patch_DATA): Add python-django-fix-testcase.patch.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-12 15:27:46 +02:00
Efraim Flashner 57dbf577f0
gnu: parallel: Update to 20160822.
* gnu/packages/parallel.scm (parallel): Update to 20160822.
2016-09-12 12:59:13 +03:00
Efraim Flashner 44177bc040
gnu: vapoursynth: Update to 33.1.
* gnu/packages/video.scm (vapoursynth): Update to 33.1.
2016-09-12 12:30:19 +03:00
ng0 b6337f30cc
gnu: tbb: Update to 2017.
* gnu/packages/tbb.scm (tbb): Update to 2017.
[license]: Change to ASL2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-12 10:37:39 +03:00
Ludovic Courtès 8d4169a1d1
gnu: Add Impressive.
* gnu/packages/pdf.scm (impressive): New variable.
2016-09-12 00:57:46 +02:00
Ludovic Courtès 55fb8d7485
gnu: texinfo: Add 6.3.
* gnu/packages/texinfo.scm (texinfo-6.3): New variable.
2016-09-11 23:44:24 +02:00
Leo Famulari ee6bc65f7c
gnu: mpd: Remove unused glib-or-gtk-build-system module.
* gnu/packages/mpd.scm (define-module): Don't import
'glib-or-gtk-build-system'.
2016-09-11 14:11:08 -04:00
ng0 aeca1c0ec5
gnu: Add pybitmessage.
* gnu/packages/messaging.scm (pybitmessage): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 20:57:05 +03:00
ng0 29e83e1c70
gnu: messaging: Use license: prefix.
* gnu/packages/disk.scm (define-module): Import guix licenses with a prefix.
(libotr): Use the license prefix.
(bitlbee): Likewise.
(hexchat): Likewise.
(ngircd): Likewise.
(pidgin): Likewise.
(pidgin-otr): Likewise.
(znc): Likewise.
(python-nbxmpp): Likewise.
(gajim): Likewise.
(prosody): Likewise.
(libtoxcore): Likewise.
(utox): Likewise.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 20:55:34 +03:00
ng0 6d8e14d0ba
gnu: Add python2-pyqt-4.
* gnu/packages/qt.scm (python2-pyqt-4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 20:49:22 +03:00
Leo Famulari 4d4a6ed775
gnu: zimg: Update to 2.2.1.
* gnu/packages/image.scm (zimg): Update to 2.2.1.
2016-09-11 13:04:00 -04:00
Leo Famulari 35eade9cf3
gnu: jbig2dec: Update to 0.13.
* gnu/packages/image.scm (jbig2dec): Update to 0.13.
[source]: Update URL.
[home-page]: Update URL.
* gnu/packages/patches/jbig2dec-ignore-testtest.patch: Adjust patch.
2016-09-11 13:04:00 -04:00
Leo Famulari cbe2cc02fb
gnu: jpegoptim: Update to 1.4.4.
* gnu/packages/image.scm (jpegoptim): Update to 1.4.4.
2016-09-11 13:04:00 -04:00
Leo Famulari 9f20f7f841
gnu: libupnp: Update to 1.6.20.
* gnu/packages/libupnp.scm (libupnp): Update to 1.6.20.
2016-09-11 11:31:40 -04:00
Christopher Baines 6c86cef5d3
gnu: Add sonata
* gnu/packages/mpd.scm (sonata): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-11 11:07:19 -04:00
Clément Lassieur 381000d794
gnu: python-git-review: Wrap it so 'git', 'ssh' and 'scp' are found.
* gnu/packages/openstack.scm (python-git-review)[arguments]: Add
'wrap-program' phase.
[inputs]: Add openssh.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 10:01:18 +03:00
Efraim Flashner 90d8ef6bcb
gnu: gnunet: Use 'modify-phases'.
* gnu/packages/gnunet.scm (gnunet)[arguments]: Use 'modify-phases'.
2016-09-11 09:08:10 +03:00
Efraim Flashner b9fe72bf4d
gnu: gnurl: Use 'modify-phases'.
* gnu/packages/gnunet.scm (gnurl)[arguments]: Use 'modify-phases'.
2016-09-11 09:06:02 +03:00
ng0 c543b4e1d3
gnu: gnurl: Update to 7.50.2-1.
* gnu/packages/gnunet.scm (gnurl): Update to 7.50.2-1.
[arguments]: Remove 'delete-failing-test1139 phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 08:55:19 +03:00
Leo Famulari 5f4d09b52c
gnu: go-1.7: Update to 1.7.1.
* gnu/packages/golang.scm (go-1.7): Update to 1.7.1.
2016-09-11 01:23:34 -04:00
Mark H Weaver 7c1fedd0d7
gnu: linux-libre: Update to 4.7.3.
* gnu/packages/linux.scm (linux-libre): Update to 4.7.3.
2016-09-10 22:11:21 -04:00
Mark H Weaver 5ed67c812f
gnu: linux-libre@4.4: Update to 4.4.20.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.20.
2016-09-10 22:11:19 -04:00
Mark H Weaver 4bf184caa4
gnu: linux-libre@4.1: Update to 4.1.32.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.32.
2016-09-10 22:11:12 -04:00
宋文武 cab1760de2
gnu: icedtea-8: Hardcode dynamically loaded libraries.
Fixes <https://bugs.gnu.org/24327>.

* gnu/packages/java.scm (icedtea-8)[arguments]: Add 'patch-jni-libs' phase.
2016-09-11 10:10:11 +08:00