6263202ba2
gnu: python-lmdb: Update to 0.95.
...
* gnu/packages/databases.scm (python-lmdb): Update to 0.95.
2019-06-22 01:02:14 +02:00
41a3498128
gnu: cbatticon: Update to 1.6.9.
...
* gnu/packages/admin.scm (cbatticon): Update to 1.6.9.
2019-06-22 01:02:14 +02:00
4286a6b085
gnu: gpgme: Update to 1.13.1.
...
* gnu/packages/gnupg.scm (gpgme): Update to 1.13.1.
2019-06-21 23:20:36 +02:00
cb1d8aeeb3
gnu: gnuplot: Update to 5.2.7.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.2.7.
2019-06-21 23:20:36 +02:00
dcdc3315c9
gnu: rclone: Update to 1.48.0.
...
* gnu/packages/sync.scm (rclone): Update to 1.48.0.
2019-06-21 23:20:36 +02:00
a65f1e8eab
gnu: Move ratpoints into "sagemath.scm"
...
* gnu/packages/algebra.scm (ratpoints): Move package from here...
* gnu/packages/sagemath.scm (ratpoints): ... to here.
2019-06-21 22:57:19 +02:00
64dc8e9e59
gnu: Add openjdk12.
...
* gnu/packages/java.scm(openjdk12): New variable.
2019-06-21 22:50:25 +02:00
38d4c21502
gnu: emacs-fish-completion: Update to 1.1.
...
* gnu/packages/emacs-xyz.scm (emacs-fish-completion): Update to 1.1.
2019-06-21 19:52:54 +02:00
e6049c84da
gnu: zn-poly: Install all libraries.
...
* gnu/packages/sagemath.scm (zn-poly): Install the static and the dynamic
library with its symlinks, and end a phase with #t.
2019-06-21 16:35:27 +02:00
b556abe416
gnu: khmer: Update to 3.0.0a3.
...
* gnu/packages/bioinformatics.scm (khmer): Update to 3.0.0a3.
[source]: Remove patch; remove seqan in snippet.
[inputs]: Add seqan-1.
* gnu/packages/patches/khmer-use-libraries.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-06-21 11:41:54 +02:00
c2c4ac0f69
gnu: icecat: Update to 60.7.2-guix1 [security fixes].
...
Includes fixes for CVE-2019-11707 and CVE-2019-11708.
* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.7.2-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
2019-06-21 05:20:36 -04:00
c94cc6de39
gnu: ungoogled-chromium: Increase build timeout.
...
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: New field.
2019-06-21 11:05:05 +02:00
6dc29ab4e2
gnu: linux-libre: Update to 5.1.12.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.12.
(%linux-libre-hash): Update hash.
2019-06-21 04:35:26 -04:00
5e9452a41d
gnu: linux-libre@4.19: Update to 4.19.53.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.53.
(%linux-libre-4.19-hash): Update hash.
2019-06-21 04:34:41 -04:00
16854b97ee
gnu: linux-libre@4.14: Update to 4.14.128.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.128.
(%linux-libre-4.14-hash): Update hash.
2019-06-21 04:33:39 -04:00
468bfd13a0
gnu: ratpoints: Generate position-independent code.
...
* gnu/packages/algebra.scm (ratpoints): Add "CCFLAGS=-fPIC" to make flags.
2019-06-21 09:55:13 +02:00
e6eafd4277
gnu: symmetrica: Generate position-independent code.
...
* gnu/packages/algebra.scm (symmetrica): Add -fPIC compiler flag.
2019-06-21 09:49:57 +02:00
c68ec87ca7
gnu: iml: Enable shared library.
...
* gnu/packages/algebra.scm (iml): Add configure flag --enable-shared.
2019-06-21 09:33:30 +02:00
fedb9571eb
gnu: Add lcalc.
...
* gnu/packages/sagemath.scm (lcalc): New variable.
* gnu/packages/patches/lcalc-default-parameters-1.patch,
gnu/packages/patches/lcalc-default-parameters-2.patch,
gnu/packages/patches/lcalc-lcommon-h.patch,
gnu/packages/patches/lcalc-using-namespace-std.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register patches.
2019-06-21 09:28:07 +02:00
88f913e8ad
gnu: lrcalc: Add a patch for identifying include files.
...
* gnu/packages/patches/lrcalc-includes.patch: New file.
* gnu/packages/algebra.scm (lrcalc): Use patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
2019-06-21 09:28:07 +02:00
2c12be76cd
gnu: python-mpi4py: Update to 3.0.2.
...
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-06-21 09:04:37 +02:00
9a2e5fe5fd
gnu: ungoogled-chromium: Disable parallel build.
...
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Set
#:parallel-build? #f. Adjust 'build' phase to account for it.
2019-06-20 22:49:32 +02:00
0605d939a9
gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435, CVE-2019-12436].
...
* gnu/packages/samba.scm (samba): Update to 4.10.5.
2019-06-20 22:49:32 +02:00
cee835897b
gnu: ungoogled-chromium: Update to 75.0.3770.100-0.5d8abc3.
...
* gnu/packages/chromium.scm (%chromium-version): Set to 75.0.3770.100.
(%chromium-origin): Update hash.
2019-06-20 22:49:32 +02:00
e4386b334a
gnu: openh264: Update to 2.0.0.
...
* gnu/packages/video.scm (openh264): Update to 2.0.0.
[source](uri): Adjust file name.
2019-06-20 22:49:32 +02:00
3df7b15e6c
gnu: ungoogled-chromium: Install icons.
...
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Install icons.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-06-20 22:49:32 +02:00
b549a05353
gnu: Use HTTPS for sphinx-doc.org.
...
* gnu/packages/sphinx.scm (python-sphinx,
python-sphinxcontrib-websupport)[home-page]: Use HTTPS.
2019-06-20 22:49:31 +02:00
bd9d72067e
gnu: python-unidecode: Update to 1.1.0.
...
* gnu/packages/python-xyz.scm (python-unidecode): Update to 1.1.0.
2019-06-20 22:49:31 +02:00
377bd155ea
gnu: dbus: Fix CVE-2019-12749.
...
* gnu/packages/patches/dbus-CVE-2019-12749.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus/fixed): New variable.
2019-06-20 22:49:31 +02:00
28618b05f0
gnu: pigx-rnaseq: Update to 0.0.7.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7.
[inputs]: Add coreutils and sed.
2019-06-20 22:29:43 +02:00
eacf29835d
gnu: Add iml.
...
* gnu/packages/algebra.scm (iml): New variable.
2019-06-20 17:36:39 +02:00
264334716f
gnu: Add ppl.
...
* gnu/packages/maths.scm (ppl): New variable.
2019-06-20 16:46:37 +02:00
ace8e269a4
services: opensmtpd: Extend the PAM service.
...
* gnu/services/mail.scm (%opensmtpd-pam-services): New variable.
(opensmtpd-service-type)[extensions]: Add it, extending
PAM-ROOT-SERVICE-TYPE.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-06-20 15:54:51 +02:00
30adfd3600
gnu: ngs-sdk: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6.
2019-06-20 14:33:57 +02:00
20874b7044
gnu: sra-tools: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6.
2019-06-20 14:33:57 +02:00
7cb44fb571
gnu: ncbi-vdb: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6.
[arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags".
2019-06-20 14:33:57 +02:00
c050f18700
gnu: guile: Add 2.2.5.
...
* gnu/packages/guile.scm (guile-2.2.5): New variable.
2019-06-20 14:07:01 +02:00
becb9cbfe1
gnu: python-jupyter-console: Update to 6.0.0.
...
* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0.
[arguments]: Enable tests.
[propagated-inputs]: Replace python-prompt-toolkit-1 with
python-prompt-toolkit.
2019-06-20 13:14:16 +02:00
8e590c8153
gnu: python2-jupyter-console: Split from python-jupyter-console.
...
* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without
package-with-python2.
2019-06-20 13:14:16 +02:00
e2ab228b46
Revert "gnu: Add libgd."
...
This reverts commit 059e4c9a15
2019-06-20 12:39:21 +02:00
197ebc36be
gnu: Add lrcalc.
...
* gnu/packages/algebra.scm (lrcalc): New variable.
2019-06-20 12:21:11 +02:00
66c67e7ba1
gnu: Add eclib.
...
* gnu/packages/algebra.scm (eclib): New variable.
2019-06-20 12:21:04 +02:00
6cbedbd2f2
gnu: Add m4rie.
...
* gnu/packages/algebra.scm (m4rie): New variable.
2019-06-20 12:20:11 +02:00
9553a41dbe
gnu: weechat: update to 2.5
...
* gnu/packages/irc.scm (weechat): update to 2.5
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 11:55:09 +02:00
25cbaa9e70
gnu: Add python-fpylll.
...
* gnu/packages/algebra.scm (python-fpylll): New variable.
2019-06-20 11:07:12 +02:00
1de48e8f8a
gnu: fplll: Update to 5.2.1.
...
* gnu/packages/algebra.scm (fplll): Update to 5.2.1.
[source]: Use Github tagged release: the original tarball no longer exists.
[native-inputs]: Add Autoconf and al.
[homepage]: Update it, the previous one no longer exists.
[description]: Expound description.
2019-06-20 11:03:37 +02:00
f7dbf186b4
services: Fix typo in (gnu services mail) exports.
...
* gnu/services/mail.scm (define-module):
Re-spell ‘%default-imap4d-config-file’.
2019-06-20 10:43:25 +02:00
75a73bb024
gnu: Add symmetrica.
...
* gnu/packages/algebra.scm (symmetrica): New variable.
* gnu/packages/patches/symmetrica-bruch.patch:
* gnu/packages/patches/symmetrica-int32.patch:
* gnu/packages/patches/symmetrica-return_values.patch:
* gnu/packages/patches/symmetrica-sort_sum_rename.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
2019-06-20 10:19:12 +02:00
a42cb6f1f1
gnu: zathura: Install icons.
...
* gnu/packages/pdf.scm (zathura)[native-inputs]: Add librsvg to build and
install the application icons.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 10:10:31 +02:00
059e4c9a15
gnu: Add libgd.
...
* gnu/packages/image.scm (libgd): New variable.
2019-06-20 10:09:17 +02:00
ab398380eb
gnu: Move ratpoints into a different module.
...
* gnu/packages/maths.scm (ratpoints): Move...
* gnu/packages/algebra.scm: ...here.
2019-06-20 09:20:29 +02:00
5543d3bb09
gnu: spdlog: Clarify license.
...
* gnu/packages/logging.scm (spdlog): Clarify license of the bundled fmt
library.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 05:38:58 +02:00
c5c51bda0b
gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471].
...
* gnu/packages/dns.scm (isc-bind): Update to 9.14.3.
2019-06-20 00:28:14 +02:00
80ee7c4a48
gnu: zn_poly: Rename to zn-poly, according to our naming conventions.
...
Reported by Nicolas Goaziou <mail@nicolasgoaziou.fr>.
This is a follow-up to commit 01822e3ebf
2019-06-20 00:03:46 +02:00
a1dcaacb7b
gnu: Add brial.
...
* gnu/packages/sagemath.scm (brial): New variable.
2019-06-19 23:57:49 +02:00
37edfb0f1c
gnu: Add m4ri.
...
* gnu/packages/algebra.scm (m4ri): New variable.
2019-06-19 23:45:29 +02:00
3f9a027ce2
gnu: Add crispy-doom.
...
* gnu/packages/games.scm (crispy-doom): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:28 +02:00
8785a71faf
gnu: emacs-unpackaged-el: Add patch for missing require statement.
...
* gnu/packages/emacs-xyz.scm (emacs-unpackaged-el)[source]: Add patch.
* gnu/packages/patches/emacs-unpackaged-req.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:27 +02:00
a7a3182761
gnu: Add numix-theme.
...
* gnu/packages/gnome.scm (numix-theme): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:27 +02:00
74247b80e5
gnu: Add python-pandocfilters.
...
* gnu/packages/textutils.scm (python-pandocfilters): New variable.
2019-06-19 22:01:53 +02:00
0c842e3a59
gnu: Add ratpoints.
...
* gnu/packages/maths.scm (ratpoints): New variable.
* gnu/packages/patches/ratpoints-sturm_and_rp_private.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
2019-06-19 21:43:12 +02:00
7c5f623192
gnu: Add gf2x.
...
* gnu/packages/algebra.scm (gf2x): New variable.
2019-06-19 18:56:55 +02:00
01822e3ebf
gnu: Add zn_poly.
...
* gnu/packages/sagemath.scm (zn_poly): New variable.
2019-06-19 18:56:55 +02:00
3923e9d942
gnu: Add pynac.
...
* gnu/packages/sagemath.scm (pynac): New variable.
2019-06-19 18:56:55 +02:00
538230c933
gnu: python-gmpy2: Update to 2.1.0b1.
...
The gmpy2 package has become a standard package in sage-8.7, and the latest
stable release is too old.
* gnu/packages/sagemath.scm (python-gmpy2): Update to 2.1.0b1.
2019-06-19 18:56:55 +02:00
f58b10cb30
gnu: balsa: Update to 2.5.7.
...
* gnu/packages/mail.scm (balsa): Update to 2.5.7.
[inputs]: Build with gtksourceview@3.
2019-06-19 17:58:48 +02:00
c8a67f13c9
gnu: nano: Update to 4.3.
...
* gnu/packages/nano.scm (nano): Update to 4.3.
2019-06-19 17:50:44 +02:00
76472ed959
gnu: notmuch: Update to 0.29.1.
...
* gnu/packages/mail.scm (notmuch): Update to 0.29.1.
2019-06-19 17:50:44 +02:00
903bc2672d
gnu: mpd: Update to 0.21.10.
...
* gnu/packages/mpd.scm (mpd): Update to 0.21.10.
2019-06-19 17:50:44 +02:00
2dcde3c733
gnu: perl-xml-sax: Update to 1.02.
...
* gnu/packages/xml.scm (perl-xml-sax): Update to 1.02.
2019-06-19 17:50:43 +02:00
1f6dd7e9c2
gnu: shadow: Update home page.
...
* gnu/packages/admin.scm (shadow)[home-page]: Update to new project home.
2019-06-19 17:50:43 +02:00
bb3dc8025a
gnu: shadow: Update to 4.7.
...
* gnu/packages/admin.scm (shadow): Update to 4.7.
2019-06-19 17:50:43 +02:00
a6dc3cc197
gnu: ansible: Update to 2.8.1.
...
* gnu/packages/admin.scm (ansible): Update to 2.8.1.
2019-06-19 17:50:43 +02:00
68c138ffce
gnu: filezilla: Update to 3.42.1.
...
* gnu/packages/ftp.scm (filezilla): Update to 3.42.1.
2019-06-19 15:42:50 +02:00
75b803ffa9
gnu: libfilezilla: Update to 0.16.0.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.16.0.
2019-06-19 15:42:50 +02:00
f1765b57b8
gnu: Add python-keras.
...
* gnu/packages/machine-learning.scm (python-keras): New variable.
2019-06-19 15:05:45 +02:00
90afa80dd9
gnu: Add python-pytest-timeout.
...
* gnu/packages/check.scm (python-pytest-timeout): New variable.
2019-06-19 15:05:45 +02:00
4abc50666e
gnu: Add python-keras-preprocessing.
...
* gnu/packages/machine-learning.scm (python-keras-preprocessing): New variable.
2019-06-19 15:05:45 +02:00
d93ad19110
gnu: Add python-keras-applications.
...
* gnu/packages/machine-learning.scm (python-keras-applications): New variable.
2019-06-19 15:05:45 +02:00
7bcf827c1d
gnu: python-botocore: Update to 1.12.149.
...
* gnu/packages/python-xyz.scm (python-botocore): Update to 1.12.149.
[native-inputs]: Add python-urllib3.
2019-06-19 15:05:45 +02:00
5d3675371c
gnu: python-s3transfer: Update to 0.2.0.
...
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.2.0.
[propagated-inputs]: Add python-urllib3.
2019-06-19 15:05:42 +02:00
bf5929c530
tests: Fix opensmtpd test.
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* gnu/tests/mail.scm (run-opensmtpd-test) <"mail arrived">: Invoke
smtpctl by its full file name.
2019-06-19 11:49:33 +02:00
5f7367cf84
gnu: linux-libre: Update to 5.1.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.11.
(%linux-libre-hash): Update hash.
2019-06-18 20:49:14 -04:00
999ab3807a
gnu: linux-libre@4.19: Update to 4.19.52.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.52.
(%linux-libre-4.19-hash): Update hash.
2019-06-18 20:48:29 -04:00
4862957c60
gnu: linux-libre@4.14: Update to 4.14.127.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.127.
(%linux-libre-4.14-hash): Update hash.
2019-06-18 20:47:38 -04:00
6bb60ba1ba
gnu: linux-libre@4.9: Update to 4.9.182.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.182.
2019-06-18 20:46:58 -04:00
cbc28ac133
gnu: linux-libre@4.4: Update to 4.4.182.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.182.
2019-06-18 20:46:11 -04:00
b84c4cda04
linux-container: Remove networking service when network is shared with host.
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* gnu/system/linux-container.scm (dummy-networking-service-type): New
variable.
(containerized-operating-system): If network is shared with host, replace
static-networking-service-type with dummy-networking-service-type.
2019-06-19 00:19:47 +05:30
cb13618b6d
gnu: python2: Add 'cpe-name' property.
...
* gnu/packages/python.scm (python2)[properties]: New field.
2019-06-18 21:02:42 +03:00
e27ae2db00
gnu: linbox: Add version 1.5.2.
...
* gnu/packages/sagemath.scm (linbox-1.5.2): New variable.
2019-06-18 19:57:05 +02:00
9fafb0d21f
gnu: fflas-ffpack: Add version 2.3.2.
...
* gnu/packages/sagemath.scm (fflas-ffpack-2.3.2): New variable.
2019-06-18 19:57:05 +02:00
80a70da7fc
gnu: givaro: Add version 4.0.4.
...
* gnu/packages/sagemath.scm (givaro-4.0.4): New variable.
2019-06-18 19:57:05 +02:00
a612f86684
gnu: Add linbox.
...
* gnu/packages/algebra.scm (linbox): New variable.
2019-06-18 19:57:05 +02:00
4bf9cb4053
gnu: Add fflas-ffpack.
...
* gnu/packages/algebra.scm (fflas-ffpack): New variable.
2019-06-18 19:57:05 +02:00
f0fbb31d01
gnu: Add givaro.
...
* gnu/packages/algebra.scm (givaro): New variable.
2019-06-18 19:57:05 +02:00
cc908fde64
gnu: Remove hydra.
...
Our copy of hydra hasn't built in years.
* gnu/packages/ci.scm (hydra): Remove variable.
2019-06-18 20:12:42 +03:00
4088ae4270
gnu: python-on-guile: Update to 0.1.0-2.058c596.
...
* gnu/packages/guile-xyz.scm (python-on-guile): Update to 0.1.0-2.058c596.
[source]: Fetch from fork at git.elephly.net.
[arguments]: Remove phase "use-canonical-directory-for-go-files".
2019-06-18 18:23:47 +02:00
d60b064d47
gnu: Add python-iml.
...
* gnu/packages/machine-learning.scm (python-iml): New variable.
2019-06-18 17:58:31 +02:00
2e8c912fdc
gnu: aircrack-ng: Update to 1.5.2.
...
* gnu/packages/networking.scm (aircrack-ng): Update to 1.5.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-18 17:01:30 +02:00
e6e2f4a08d
gnu: Add emacs-gruvbox-theme
...
* gnu/packages/emacs-xyz.scm (emacs-gruvbox-theme): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-18 16:55:01 +02:00
0c212811ac
gnu: Add python-slurm-magic.
...
* gnu/packages/parallel.scm (python-slurm-magic): New variable.
2019-06-18 16:51:22 +02:00
a32e3b9078
gnu: gemmlowp-for-tensorflow: Use SSE2.
...
* gnu/packages/machine-learning.scm (gemmlowp-for-tensorflow)[arguments]: Only
enable SSE2, not SSE4.1 on i686 and x86_64 architectures.
2019-06-18 16:02:53 +02:00
55dae98f73
gnu: Add python-matplotlib-venn.
...
* gnu/packages/python-xyz.scm (python-matplotlib-venn): New variable.
2019-06-18 14:50:52 +02:00
8b5f756ccb
gnu: python-ipython: Update to 7.5.0
...
* gnu/packages/python-xyz.scm (python2-ipython): Do not inherit from
python-ipython.
[outputs]: Remove separate "doc" output.
[native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and
the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec,
texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts,
texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ,
texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist,
texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap,
texlive-latex-float, texlive-latex-framed, texlive-latex-geometry,
texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools,
texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip,
texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable,
texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs,
texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and
texlive-latex-wrapfig.
[arguments]: Remove "install-doc" phase; rename "fix-tests" phase to
"delete-broken-tests" and adjust.
(python-ipython): Update to 7.5.0.
[outputs]: Remove separate "doc" output.
[propagated-inputs]: Add python-backcall and python-jedi; replace
python-prompt-toolkit-1 with python-prompt-toolkit.
[native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and
the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec,
texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts,
texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ,
texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist,
texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap,
texlive-latex-float, texlive-latex-framed, texlive-latex-geometry,
texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools,
texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip,
texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable,
texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs,
texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and
texlive-latex-wrapfig.
[arguments]: Remove "install-doc" phase; simplify "fix-tests" phase.
[properties]: Remove.
(python-ipython-documentation): New variable.
2019-06-18 14:22:26 +02:00
82110deadb
gnu: python-ipykernel: Update to 5.1.1.
...
* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.1.1.
2019-06-18 14:22:26 +02:00
0f3789477a
gnu: python2-ipykernel: Split from python-ipykernel.
...
* gnu/packages/python-xyz.scm (python2-ipykernel): Define without
package-with-python2.
2019-06-18 14:22:26 +02:00
dede052a2c
gnu: Add python-backcall.
...
* gnu/packages/python-xyz.scm (python-backcall): New variable.
2019-06-18 14:22:23 +02:00
1e609b78c7
gnu: stunnel: Update to 5.55.
...
* gnu/packages/web.scm (stunnel): Update to 5.55.
2019-06-18 06:15:02 +02:00
90d537f833
gnu: gaupol: Update to 1.6.
...
* gnu/packages/video.scm (gaupol): Update to 1.6.
2019-06-18 06:15:02 +02:00
b37fa81d9b
gnu: eternalterminal: Update to 5.1.10.
...
* gnu/packages/terminals.scm (eternalterminal): Update to 5.1.10.
2019-06-18 06:15:02 +02:00
614f7df3ae
gnu: mercurial: Update to 5.0.1.
...
* gnu/packages/version-control.scm (mercurial): Update to 5.0.1.
2019-06-18 06:15:02 +02:00
f2c119a129
gnu: rtv: Update to 1.27.0.
...
* gnu/packages/syndication.scm (rtv): Update to 1.27.0.
2019-06-18 06:15:02 +02:00
ecd5c202b2
gnu: libnftnl: Update to 1.1.3.
...
* gnu/packages/linux.scm (libnftnl): Update to 1.1.3.
2019-06-18 06:15:02 +02:00
55c08305d6
gnu: gandi.cli: Update to 1.5.
...
* gnu/packages/networking.scm (gandi.cli): Update to 1.5.
2019-06-18 06:15:02 +02:00
a0f2c945e3
gnu: hcxdumptool: Update to 5.1.5.
...
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.5.
2019-06-18 06:15:02 +02:00
6807d6a985
gnu: hcxtools: Update to 5.1.6.
...
* gnu/packages/networking.scm (hcxtools): Update to 5.1.6.
2019-06-18 06:15:02 +02:00
23414a8efa
gnu: mpd-mpc: Update to 0.32.
...
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.32.
2019-06-18 06:15:02 +02:00
8dec0cdf6e
gnu: radare2: Update to 3.5.1.
...
* gnu/packages/engineering.scm (radare2): Update to 3.5.1.
2019-06-18 06:15:01 +02:00
0ab5e91e1c
gnu: rust: Update to 1.35.0.
...
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.34): ...this.
(rust): New variable.
2019-06-17 19:46:05 -07:00
46dc940c9a
gnu: Add mako.
...
* gnu/packages/wm.scm (mako): New variable.
2019-06-18 00:25:23 +02:00
4c32f116cd
gnu: Add libhomfly.
...
* gnu/packages/sagemath.scm (libhomfly): New variable.
2019-06-18 00:14:14 +02:00
972ef8f591
gnu: Add libbraiding.
...
* gnu/packages/sagemath.scm (libbraiding): New variable.
2019-06-18 00:14:14 +02:00
c8535731b8
gnu: python-flask-script: Fix tests.
...
* gnu/packages/python-web.scm
(python-flask-script)[arguments]<#:phases>[patch-tests]: New phase.
2019-06-17 22:56:19 +02:00
27d6d24e63
gnu: python-scikit-learn: Update to 0.20.3.
...
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.3.
2019-06-17 20:22:42 +02:00
a6f2ced34b
gnu: Add tbsp.
...
* gnu/packages/bioinformatics.scm (tbsp): New variable.
2019-06-17 20:22:38 +02:00
bf473f0ca0
gnu: Add rw.
...
* gnu/packages/graph.scm (rw): New variable.
2019-06-17 19:47:15 +02:00
f455d99dfa
gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.
...
* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here...
* gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
2019-06-17 19:47:15 +02:00
7658904a34
gnu: Fix freeorion build.
...
* gnu/packages/games.scm (freeorion)[arguments]: Fix font unbundling.
2019-06-17 17:37:04 +02:00
9f6065237d
gnu: Add edge-addition-planarity-suite.
...
* gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
2019-06-17 17:02:01 +02:00
1e1a65a633
gnu: python-cypari2: Update to 2.1.1.
...
* gnu/packages/sagemath.scm (python-cypari2): Update to 2.1.1.
2019-06-17 16:00:13 +02:00
20caeea483
gnu: Add cliquer.
...
* gnu/packages/sagemath.scm (cliquer): New variable.
2019-06-17 16:00:13 +02:00
505459d7cb
gnu: busybox: Don't install to usr.
...
* gnu/packages/busybox.scm (busybox)[arguments]: Add a custom phase
to prevent installing to %PREFIX/usr.
2019-06-17 16:27:16 +03:00
de2d14f2ff
gnu: waybar: Add optional dependencies.
...
* gnu/packages/wm.scm(waybar)[inputs]: Add libdbusmenu, libnl,
libmpdclient and pulseaudio.
2019-06-17 13:33:06 +02:00
5cfc16320a
gnu: python-scipy: Update to 1.2.2.
...
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.2.2.
2019-06-17 13:31:23 +02:00
f434664cc0
gnu: oil-shell: Update to 0.6pre22.
...
It turns out the currently packaged release fails to build for me.
According to upstream, the 0.6 pre-releases are preferable to
currently packaged 0.5.
gnu/packages/shells.scm (oil-shell): Update to 0.6pre22.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17 12:36:13 +02:00
73eacca85e
gnu: kakoune: Remove dependency on boost.
...
kakoune builds without boost since a while already.
* gnu/packages/text-editors.scm (kakoune)[inputs]: Remove boost.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17 12:36:13 +02:00
ed504cafa2
vm: 'system-docker-image' builds in a UTF-8 locale.
...
Fixes <https://bugs.gnu.org/36215 >.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.
This is a followup to 9c941364bf
2019-06-17 12:36:13 +02:00
123b9c02dd
gnu: open-zwave: Unbundle hidapi.
...
* gnu/packages/patches/open-zwave-hidapi.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/zwave.scm (open-zwave)[source](patches): New field.
(snippet): Delete 'cpp/hidapi'.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add HIDAPI.
2019-06-17 12:36:13 +02:00
bf95a142bb
gnu: gap: Update to 4.10.1.
...
* gnu/packages/algebra.scm (gap): Update to 4.10.1.
Install headers and library files by hand, since the make targets have
disappeared. Delete the special check phase, since the "make check" target
has appeared. Remove a package that is no longer recommended, and enable
two recommended packages with clarified licenses.
2019-06-17 12:15:21 +02:00
55350f8316
gnu: cmst: Don't install files to usr.
...
* gnu/packages/connman.scm (cmst)[arguments]: Move custom 'fix-Makefiles
phase before 'build. Add more substitutions.
2019-06-17 10:02:47 +03:00
9e3e80baa3
gnu: cava: Don't install files to usr.
...
* gnu/packages/audio.scm (cava)[arguments]: In configure-flags change
FONT_DIR to not use 'usr'.
2019-06-17 10:02:46 +03:00
ee0b4733e1
gnu: toybox: Don't install files to usr.
...
* gnu/packages/busybox.scm (toybox)[arguments]: Add custom phase to
remove any files installed in $PREFIX/usr.
2019-06-17 10:02:45 +03:00
c9f0331152
gnu: xpra: Update to 2.5.2.
...
* gnu/packages/xorg.scm (xpra): Update to 2.5.2.
2019-06-17 08:28:38 +02:00
0bc010dacd
gnu: Add emacs-extend-smime.
...
* gnu/packages/emacs-xyz.scm (emacs-extend-smime): New variable.
2019-06-16 21:25:59 -07:00
3c33931c80
gnu: Upgrade emacs-default-encrypt to 4.4.
...
* gnu/packages/emacs-xyz.scm (emacs-default-encrypt) <version>: Upgrade
to 4.4.
<sha256>: Update accordingly.
<uri, home-page>: Honor changes to upstream's website.
2019-06-16 21:25:59 -07:00
932a6c422a
gnu: r-rhisat2: Update to 1.0.3.
...
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.3.
2019-06-17 04:55:12 +02:00
42df44f645
gnu: r-seurat: Update to 3.0.2.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2.
2019-06-17 04:55:03 +02:00
6dc3c58728
gnu: r-tximport: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1.
2019-06-17 04:54:56 +02:00
7bbd06ed59
gnu: r-systempiper: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1.
2019-06-17 04:54:51 +02:00
fd61e9c5d6
gnu: r-r-utils: Update to 2.9.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.9.0.
2019-06-17 04:54:46 +02:00
Tobias Geerinckx-Rice