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Author SHA1 Message Date
Tobias Geerinckx-Rice 4370881631
gnu: r-foreign: Update to 0.8-71. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
 2018-08-21 07:17:05 +02:00
Chris Marusich 6fb6ac6857
gnu: services: Fix pcscd activation bug. 
Fixes: <https://bugs.gnu.org/32478>.

* gnu/services/security-token.scm (pcscd-activation): Idempotently create the
/var/lib/pcsc symlink so that it does not fail when it already exists.
 2018-08-20 21:43:56 -07:00
Tobias Geerinckx-Rice 6d863cdedd
gnu: r-openssl: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
 2018-08-21 03:25:42 +02:00
Tobias Geerinckx-Rice 4481004fa4
gnu: r-modeltools: Update to 0.2-22. 
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
 2018-08-21 03:25:41 +02:00
Tobias Geerinckx-Rice 8ecf3f7ea5
gnu: mysql: Update to 5.7.23. 
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
 2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 7cbf06d8c2
gnu: mysql: Fix build. 
MySQL demands boost@1.59.0, and lying about it no longer works:

sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
   catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
                                                                                 ^
[...]

* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
 2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 725449bd7a
gnu: python-pyodbc: Update to 4.0.24. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 28635e5266
gnu: python-mysqlclient: Update to 1.3.13. 
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice db4e76416c
gnu: perl-dbd-sqlite: Update to 1.58. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 9c112bee91
gnu: r-energy: Update to 1.7-5. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-5.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 8b0701d97a
gnu: r-tinytex: Update to 0.6. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.6.
[propagated-inputs]: Add r-xfun.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice 2045af8035
gnu: r-xfun: Update to 0.3. 
* gnu/packages/cran.scm (r-xfun): Update to 0.3.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice 9b77f724c0
gnu: r-jomo: Update to 2.6-3. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-3.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice cd4abb6d4a
gnu: r-trend: Update to 1.1.1. 
* gnu/packages/cran.scm (r-trend): Update to 1.1.1.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice dc98bbcad4
gnu: r-lava: Update to 1.6.3. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.3.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice 632cefdac9
gnu: r-mitml: Update to 0.3-6. 
* gnu/packages/cran.scm (r-mitml): Update to 0.3-6.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice 658e37b6e8
gnu: r-vgam: Update to 1.0-6. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-6.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice 52773e5cf4
gnu: python-py: Use HTTPS home page. 
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
 2018-08-20 16:36:20 +02:00
Tobias Geerinckx-Rice c85626bb0f
gnu: xpad: Update to 5.1.0. 
* gnu/packages/gnome.scm (xpad): Update to 5.1.0.
[arguments]: Remove obsolete ‘run-autogen’ phase.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice bc2f9dc3ce
gnu: emacs-f: Update to 0.20.0. 
* gnu/packages/emacs.scm (emacs-f): Update to 0.20.0.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice bd0570f21d
gnu: emacs-f: Don't use unstable tarball. 
* gnu/packages/emacs.scm (emacs-f)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice cb4baa4da6
gnu: gimp: Report bugs to Guix. 
Upstream prints this when running ./configure. Take the hint.

  NOTE: if you plan on packaging GIMP for distribution, it is
        recommended to override the bug report URL with option:
          --with-bug-report-url=https://example.com/
        so that you can filter packaging bugs from core bugs before
        reporting upstream.

* gnu/packages/gimp.scm (gimp)[arguments]: Customise bug report URI.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice 0f83d6029e
gnu: gimp: Update to 2.10.6. 
* gnu/packages/gimp.scm (gimp): Update to 2.10.6.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice 901888a854
gnu: gegl: Update to 0.4.8. 
* gnu/packages/gimp.scm (gegl): Update to 0.4.8.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice 3cae7f582e
gnu: babl: Update to 0.1.56. 
* gnu/packages/gimp.scm (babl): Update to 0.1.56.
 2018-08-20 16:35:54 +02:00
Ludovic Courtès 64bcc76c00
gnu: guile-ssh: Update to 0.11.3. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.3.
 2018-08-20 16:32:18 +02:00
Ludovic Courtès 0ec3800274
gnu: guile-json: Update to 1.1.1. 
* gnu/packages/guile.scm (guile-json): Update to 1.1.1.
[source]: Remove snippet.
[native-inputs]: Add PKG-CONFIG.
 2018-08-20 16:32:18 +02:00
Ludovic Courtès a50eed201b
gnu: guile-redis: Update to 1.0.0. 
* gnu/packages/guile.scm (guile-redis): Update to 1.0.0.
[source]: Fetch from github.com.  Remove snippet.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and PKG-CONFIG.
 2018-08-20 16:32:17 +02:00
Roel Janssen e63da346cf
gnu: Update virtuoso-ose to 7.2.5. 
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.5.
 2018-08-20 16:13:45 +02:00
Rutger Helling f307a9eca5
gnu: xpra: Update to 2.3.3. 
* gnu/packages/xorg.scm (xpra): Update to 2.3.3.
 2018-08-20 08:48:53 +02:00
Rutger Helling 346c146f7f
gnu: wine-staging: Update to 3.14. 
* gnu/packages/wine.scm (wine-staging): Update to 3.14.
 2018-08-20 08:17:49 +02:00
Rutger Helling 56d4b2163a
gnu: wine-staging-patchset-data: Update to 3.14. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.14.
 2018-08-20 08:17:49 +02:00
Leo Famulari 1feaca62d3
gnu: syncthing: Invoke build steps with INVOKE. 
* gnu/packages/syncthing.scm (syncthing)[arguments]: Use INVOKE.
 2018-08-19 17:50:48 -04:00
Marius Bakke 146c3b2160
gnu: libconfuse: Update to 3.2.2 [fixes CVE-2018-14447]. 
* gnu/packages/wm.scm (libconfuse): Update to 3.2.2.
 2018-08-19 18:40:30 +02:00
Ludovic Courtès 0b93d04ac5
gnu: gcc@4.8: Fix libsanitizer build issue. 
Fixes <https://bugs.gnu.org/32397>.
Reported by fis trivial <ybbs.daans@hotmail.com>.

* gnu/packages/patches/gcc-4.8-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.8)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-08-19 18:21:24 +02:00
Ludovic Courtès 6d1a7ce8ea
gnu: libchop: Fix build and test errors. 
* gnu/packages/backup.scm (libchop)[arguments]: New field.
 2018-08-19 18:21:24 +02:00
Ludovic Courtès c9f898cd31
gnu: libchop: Require gperf 3.0. 
Fixes <https://bugs.gnu.org/32382>.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.

* gnu/packages/backup.scm (libchop)[native-inputs]: Use GPERF-3.0
instead of GPERF.
 2018-08-19 18:21:24 +02:00
Marius Bakke a7bc1588e6
Merge branch 'staging' 2018-08-19 15:24:59 +02:00
Jan Nieuwenhuizen 8a502c3b60
gnu: mescc-tools: Update to 0.5.2. 
* gnu/packages/mes.scm (mescc-tools): Update to 0.5.2.
 2018-08-19 13:30:57 +02:00
Mark H Weaver 860c37b9f2
gnu: linux-libre: Update to 4.18.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.3.
(%linux-libre-hash): Update hash.
(%linux-libre-patches): Rename to ...
(%linux-libre-4.18-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Apply %linux-libre-4.18-patches.
 2018-08-19 02:19:20 -04:00
Mark H Weaver 08e43eba4e
gnu: linux-libre@4.14: Update to 4.14.65. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.65.
(%linux-libre-4.14-hash): Update hash.
 2018-08-19 02:16:53 -04:00
Mark H Weaver ad6baf9dc1
gnu: linux-libre@4.9: Update to 4.9.122. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.122.
 2018-08-19 02:16:08 -04:00
Mark H Weaver 1ae8efa57d
gnu: linux-libre@4.4: Update to 4.4.150. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.150.
 2018-08-19 02:15:30 -04:00
Mark H Weaver 4ecd049074
Revert "gnu: linux-libre: Add fix from 4.4.150, 4.9.122, 4.14.65, 4.18.3." 
This reverts commit 50dbd26ce0.
 2018-08-19 02:13:49 -04:00
Kei Kebreau b13ba3f1ba
gnu: gnuplot: Update to 5.2.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
 2018-08-18 21:21:52 -04:00
Kei Kebreau e1ecaa836f
gnu: xtensor: Update to 0.17.1. 
* gnu/packages/algebra.scm (xtensor): Update to 0.17.1.
[source]: Use git-fetch.
 2018-08-18 19:48:24 -04:00
Kei Kebreau 0bb41aec99
gnu: xtl: Update to 0.4.14. 
* gnu/packages/cpp.scm (xtl): Update to 0.4.14.
[source]: Use git-fetch.
 2018-08-18 19:48:18 -04:00
Mark H Weaver 50dbd26ce0
gnu: linux-libre: Add fix from 4.4.150, 4.9.122, 4.14.65, 4.18.3. 
This adds the sole fix included in upstream versions 4.18.3, 4.14.65,
4.9.122, and 4.4.150.

* gnu/packages/linux.scm
(%linux-libre-exempt-zeroed-PTEs-from-inversion-patch): New variable.
(%linux-libre-patches): Repurposed for patches applicable to all versions.
Add the aforementioned fix.
(%linux-libre-4.18-patches): New variable, with definition based on the
previous %linux-libre-patches.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Add %linux-libre-4.18-patches.
(linux-libre-4.14, linux-libre-arm-generic-4.14)
(linux-libre-arm-omap2plus-4.14, linux-libre-4.9)
(linux-libre-4.4): Add %linux-libre-patches.
 2018-08-18 15:40:02 -04:00
Mark H Weaver 863e61994c
gnu: linux-libre: Update to 4.18.2. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.2.
(%linux-libre-hash): Update hash.
 2018-08-18 15:39:59 -04:00
Mark H Weaver b8b2247803
gnu: linux-libre@4.14: Update to 4.14.64. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.64.
(%linux-libre-4.14-hash): Update hash.
 2018-08-18 15:39:57 -04:00
Mark H Weaver 32f4859399
gnu: linux-libre@4.9: Update to 4.9.121. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.121.
 2018-08-18 15:39:55 -04:00
Mark H Weaver f36f5170b2
gnu: linux-libre@4.4: Update to 4.4.149. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.149.
 2018-08-18 15:39:48 -04:00
Tobias Geerinckx-Rice 8e950ee99c
gnu: sudo: Update to 1.8.24. 
* gnu/packages/admin.scm (sudo): Update to 1.8.24.
 2018-08-18 21:18:21 +02:00
Kei Kebreau f35c3bbb68
gnu: singular: Update to 4.1.1p3. 
* gnu/packages/algebra.scm (singular): Update to 4.1.1p3.
 2018-08-18 12:04:54 -04:00
Kei Kebreau 7fe491fbc8
gnu: cddlib: Update to 0.94i. 
* gnu/packages/maths.scm (cddlib): Update to 0.94i.
 2018-08-18 12:04:54 -04:00
Tobias Geerinckx-Rice 8cd80a4b61
gnu: eigen: Update to 3.3.5. 
* gnu/packages/algebra.scm (eigen): Update to 3.3.5.
[source]: Remove upstreamed ARM patch and obsolete substitutions.
* gnu/packages/patches/eigen-arm-neon-fixes.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-18 16:40:31 +02:00
Tobias Geerinckx-Rice fbe9c80fb7
gnu: eigen: Throw exceptions on test failure. 
* gnu/packages/algebra.scm (eigen)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-08-18 16:19:58 +02:00
Tobias Geerinckx-Rice 1b00e3bd2d
gnu: knot: Update to 2.7.1. 
* gnu/packages/dns.scm (knot): Update to 2.7.1.
[inputs]: Remove nettle, python-2, and python2-lmdb.
[arguments]: Remove ‘wrap-python-scripts’ phase for removed migration
scripts. Remove obsolete modules from, and add dnstap support for the
command-line tools to, #:configure-flags.
 2018-08-18 16:07:00 +02:00
Tobias Geerinckx-Rice ee1362fc07
gnu: knot: Deduplicate documentation directories. 
* gnu/packages/dns.scm (knot)[arguments]: Install documentation to the
correct versioned subdirectory, as already done by the build system.
 2018-08-18 16:07:00 +02:00
Marius Bakke 7d4d7992aa
gnu: libmbim: Update to 1.16.2. 
* gnu/packages/freedesktop.scm (libmbim): Update to 1.16.2.
 2018-08-18 15:22:25 +02:00
Marius Bakke 90b3e136b8
gnu: xscreensaver: Update to 5.40. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.40.
 2018-08-18 15:20:41 +02:00
Marius Bakke 445704c228
gnu: webkitgtk: Update to 2.20.5. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.5.
 2018-08-18 15:16:51 +02:00
Marius Bakke ddf1ace064
gnu: Add varnish-modules. 
* gnu/packages/web.scm (varnish-modules): New public variable.
 2018-08-18 15:12:36 +02:00
Marius Bakke da682825df
gnu: Add varnish. 
* gnu/packages/web.scm (varnish): New variable.
 2018-08-18 15:12:36 +02:00
Tobias Geerinckx-Rice 567f02353a
gnu: mpd: Update to 0.20.21. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.21.
 2018-08-18 14:07:40 +02:00
Tobias Geerinckx-Rice 68a234c1b8
gnu: perl-module-scandeps: Update to 1.25. 
* gnu/packages/perl.scm (perl-module-scandeps): Update to 1.25.
 2018-08-18 14:07:40 +02:00
Tobias Geerinckx-Rice 4b6a0dfc2b
gnu: r-processx: Update to 3.2.0. 
* gnu/packages/cran.scm (r-processx): Update to 3.2.0.
[propagated-inputs]: Add r-ps.
 2018-08-18 14:07:39 +02:00
Tobias Geerinckx-Rice b55e64d49f
gnu: Add r-ps. 
* gnu/packages/cran.scm (r-ps): New public variable.
 2018-08-18 14:07:39 +02:00
Tobias Geerinckx-Rice 822fcaf8d8
gnu: r-mclust: Update to 5.4.1. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.1.
 2018-08-18 13:43:19 +02:00
Tobias Geerinckx-Rice 72d0585224
gnu: r-lme4: Update to 1.1-18-1. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-18-1.
 2018-08-18 13:43:18 +02:00
Leo Famulari 399c5fafcd
gnu: gst-plugins-base: Don't build with Opus for 32-bit systems. 
Fixes <https://bugs.gnu.org/32360> and <https://bugs.gnu.org/32466>.

* gnu/packages/gstreamer.scm (gst-plugins-base)[inputs]: Exclude opus
when building for 32-bit systems.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2018-08-18 13:27:41 +02:00
Tobias Geerinckx-Rice 72e782b2b5
gnu: strace: Disable parallel tests. 
Tests fail in undeterministic fashion when run in parallel on phat rigs.

Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=32459>.
Reported by Clément Lassieur <clement@lassieur.org>.

* gnu/packages/linux.scm (strace)[arguments]: Disable #:parallel-tests?.
 2018-08-18 13:17:11 +02:00
Mark H Weaver 3004f1c69b
gnu: linux-libre: Update to 4.18.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.1.
(%linux-libre-hash): Update hash.
(%linux-libre-patches): New variable.
(linux-libre): Add %linux-libre-patches.
* gnu/packages/aux-files/linux-libre/4.17-arm.conf,
gnu/packages/aux-files/linux-libre/4.17-arm64.conf,
gnu/packages/aux-files/linux-libre/4.17-i686.conf,
gnu/packages/aux-files/linux-libre/4.17-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.18-arm.conf,
gnu/packages/aux-files/linux-libre/4.18-arm64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf,
gnu/packages/aux-files/linux-libre/4.18-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
 2018-08-18 06:19:31 -04:00
Rutger Helling b83a40906e
gnu: c-toxcore: Update to 0.2.6. 
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.6.
 2018-08-18 12:21:52 +02:00
Arun Isaac 2913a94237
gnu: Add dante. 
* gnu/packages/networking.scm (dante): New variable.
 2018-08-18 00:50:37 +05:30
Tobias Geerinckx-Rice a9088fc83e
gnu: emacs-git-modes: Update to 1.2.8. 
* gnu/packages/emacs.scm (git-modes): Update to 1.2.8.
 2018-08-17 17:51:15 +02:00
Kei Kebreau b66741edc9
gnu: octave: Update to 4.4.1. 
* gnu/packages/maths.scm (octave): Update to 4.4.1.
(qtoctave)[source]: Remove obsolete patch.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-17 10:47:52 -04:00
Christopher Baines b98eace814
gnu: lollypop: Update to 0.9.521. 
* gnu/packages/gnome.scm (lollypop)[version]: Update to 0.9.521.
[source]: Change the URL, as the project has moved on gitlab.gnome.org. Update
the uri and sha256.
[home-page]: Change to wiki.gnome.org as the previous URL 404's.
 2018-08-17 12:21:48 +01:00
Tobias Geerinckx-Rice dcf16c12cf
gnu: r-lang: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-lang): Update to 0.2.2.
 2018-08-17 13:13:11 +02:00
Tobias Geerinckx-Rice ef51e4e2b6
gnu: claws-mail: Update to 3.17.0. 
* gnu/packages/mail.scm (claws-mail): Update to 3.17.0.
 2018-08-17 13:13:11 +02:00
Tobias Geerinckx-Rice ba5c926c18
gnu: claws-mail: Use HTTPS. 
* gnu/packages/mail.scm (claws-mail)[source, home-page]: Use HTTPS.
 2018-08-17 13:13:10 +02:00
Tobias Geerinckx-Rice 24d6cc1d59
gnu: Use HTTPS for gtk.org. 
* gnu/packages/gimp.scm (babl)[source]: Use HTTPS for ftp.gtk.org.
* gnu/packages/gnome.scm (rest)[home-page]: Use HTTPS for www.gtk.org.
* gnu/packages/gtk.scm (gtk+-2, gtk-doc)[home-page]: Likewise.
 2018-08-17 13:13:10 +02:00
Oleg Pykhalov 773899112b
gnu: restic: Set a variable to disable FUSE tests. 
* gnu/packages/backup.scm (restic): Set a variable to disable FUSE tests.
 2018-08-17 11:05:01 +03:00
Tobias Geerinckx-Rice c4f8953a12
gnu: lxc: Update to 3.0.2. 
* gnu/packages/virtualization.scm (lxc): Update to 3.0.2.
[source]: Remove patch.
* gnu/packages/patches/lxc-CVE-2018-6556.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-17 05:19:05 +02:00
Tobias Geerinckx-Rice 3ef4b30128
gnu: python-pyusb: Update to 1.0.2. 
* gnu/packages/libusb.scm (python-pyusb): Update to 1.0.2.
[source]: Update PyPI package name.
[home-page]: Update URI.
 2018-08-17 03:50:35 +02:00
Tobias Geerinckx-Rice e2749d7576
gnu: ntp: Update to 4.2.8p12 [fix CVE-2018-12327]. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p12.
 2018-08-17 03:49:19 +02:00
Vagrant Cascadian 5d706f1898
gnu: dtc: Update to 1.4.7. 
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.7.
[native-inputs]: Add valgrind.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 18:47:58 -04:00
Tobias Geerinckx-Rice f133e24481
gnu: armadillo: Update to 9.100.5. 
* gnu/packages/maths.scm (armadillo): Update to 9.100.5.
 2018-08-17 00:38:17 +02:00
Tobias Geerinckx-Rice eb668d5c2e
gnu: r-pkgconfig: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-pkgconfig): Update to 2.0.2.
 2018-08-17 00:38:17 +02:00
Tobias Geerinckx-Rice 22a01411ff
gnu: diffstat: Update to 1.62. 
* gnu/packages/version-control.scm (diffstat): Update to 1.62.
 2018-08-17 00:38:16 +02:00
Konrad Hinsen e0b49c785b
gnu: racket: Update to 7.0. 
* gnu/packages/scheme.scm (racket): Update to 7.0.
[inputs]: Add libedit.
[arguments]: Update the list of FFI library references to patch.
[source]: Remove 'racket-fix-xform-issue.patch'.
* gnu/packages/patches/racket-store-checksum-override.patch: Adjust.
* gnu/packages/patches/racket-fix-xform-issue.patch: Delete file.
* gnu/local.mk: Adjust accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 18:36:09 -04:00
Clément Lassieur 41c038078e
gnu: cuirass: Update to 4db99f6. 
* gnu/packages/ci.scm (cuirass): Update to 4db99f6.
 2018-08-16 22:56:54 +02:00
Pierre Neidhardt 288c8c97e8
gnu: Add texlive-latex-ocgx2. 
* gnu/packages/tex.scm (texlive-latex-ocgx2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 16:53:29 -04:00
Pierre Neidhardt 7d50dff34c
gnu: Add texlive-latex-media9. 
* gnu/packages/tex.scm (texlive-latex-media9): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 16:53:26 -04:00
Mark H Weaver b42592db6a
gnu: linux-libre: Update to 4.17.15. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.15.
(%linux-libre-hash): Update hash.
 2018-08-16 16:25:07 -04:00
Mark H Weaver 0dcfc00550
gnu: linux-libre@4.14: Update to 4.14.63. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.63.
(%linux-libre-4.14-hash): Update hash.
 2018-08-16 16:25:05 -04:00
Mark H Weaver 4edf8015ab
gnu: linux-libre@4.9: Update to 4.9.120. 
* gnu/packages/linux.scm (linux-libre@4.9): Update to 4.9.120.
 2018-08-16 16:25:02 -04:00
Mark H Weaver 88710fff04
gnu: linux-libre@4.4: Update to 4.4.148. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.148.
 2018-08-16 16:25:00 -04:00
Tobias Geerinckx-Rice 1dfb14d2f7
gnu: btrfs-progs: Update to 4.17.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.17.1.
[source]: Remove patch.
[native-inputs]: Add python.
* gnu/packages/patches/btrfs-progs-e-value-block.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-16 22:21:53 +02:00
Tobias Geerinckx-Rice 76c888cb94
gnu: e2fsprogs: Update to 1.44.3. 
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.3.
[source]: Remove glibc-2.27 patch.
(extundelete)[source]: Apply e2fsprogs-1.44 patch.
* gnu/packages/patches/e2fsprogs-glibc-2.27.patch: Delete file...
* gnu/local.mk (dist_patch_DATA): ...remove it, and add...
* gnu/packages/patches/extundelete-e2fsprogs-1.44.patch: ...this new
file.
 2018-08-16 22:21:53 +02:00
Leo Famulari 1d9b96c08f
gnu: oil-shell: Update to 0.5.0. 
* gnu/packages/shells.scm (oil-shell): Update to 0.5.0.
 2018-08-16 16:08:13 -04:00
Leo Famulari e2b2baa71d
Revert "gnu: Add r-hash." 
This reverts commit b9ff25999d.

This package is a duplicate of the r-hash package added in
4646d18eb7.
 2018-08-16 15:29:48 -04:00
Tobias Geerinckx-Rice bf3c84bd2d
Revert "gnu: efivar: Update to 36." 
This reverts commit 025370b045.

See <https://github.com/rhboot/efivar/issues/111>, and
887fe1fbde7d72788ec348ab4665e1df3d0d704f...
 2018-08-16 21:09:12 +02:00
Marius Bakke df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Marius Bakke 37d203985e
gnu: python-cython: Disable tests that fail on armhf. 
* gnu/packages/python.scm (python-cython)[arguments]: On armhf-linux, add
phase to disable two tests.
 2018-08-16 20:33:28 +02:00
Clément Lassieur 8d4805ba29
services: cuirass: Put data in /var/lib to avoid removal at boot. 
Fixes <https://bugs.gnu.org/32330>.

* gnu/services/cuirass.scm (<cuirass-configuration>)[database]: Change default
from /var/run/cuirass/cuirass.db to /var/lib/cuirass/cuirass.db.
(cuirass-account): Change home directory from /var/run/<user> to
/var/lib/<user>.
 2018-08-16 19:23:29 +02:00
Tobias Geerinckx-Rice 8f60e5338a
gnu: python-pyxdg: Use PYPI-URI. 
* gnu/packages/freedesktop.scm (python-pyxdg)[source]: Use PYPI-URI.
 2018-08-16 18:06:48 +02:00
Tobias Geerinckx-Rice bd835ff22f
gnu: multipath-tools: Set CC in #:make-flags. 
* gnu/packages/linux.scm (multipath-tools)[arguments]: Set ‘CC=gcc’
in #:make-flags instead of in a custom phase.
 2018-08-16 17:57:50 +02:00
Tobias Geerinckx-Rice 12b99f753a
gnu: multipath-tools: Update to 0.7.7. 
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.7.
 2018-08-16 17:57:50 +02:00
Tobias Geerinckx-Rice 21756abd6f
gnu: strace: Update to 4.24. 
* gnu/packages/linux.scm (strace): Update to 4.24.
 2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice acafdda143
gnu: psmisc: Update to 23.2. 
* gnu/packages/linux.scm (psmisc): Update to 23.2.
 2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice 025370b045
gnu: efivar: Update to 36. 
* gnu/packages/linux.scm (efivar): Update to 36.
 2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice c6dd279004
gnu: efivar: Update home page. 
* gnu/packages/linux.scm (efivar)[source, home-page]: Update URIs.
 2018-08-16 17:57:48 +02:00
Tobias Geerinckx-Rice 4505369c4e
gnu: libnfsidmap: Update to 0.27. 
* gnu/packages/linux.scm (libnfsidmap): Update to 0.27.
[source]: Update source URI.
[native-inputs]: Add autoconf.
 2018-08-16 17:57:48 +02:00
Marius Bakke 0a1f520d40
gnu: r-rmysql: Add missing dependency on OpenSSL. 
* gnu/packages/databases.scm (r-rmysql)[inputs]: Add OPENSSL.
 2018-08-16 17:39:10 +02:00
Amirouche 037d185111
gnu: argon2: Install pkgconfig file. 
* gnu/packages/password-utils.scm (argon2)[arguments]: Patch libargon2.pc.
Add phase to install it.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2018-08-16 17:18:05 +02:00
Marius Bakke 5f9a9945b5
gnu: vlc: Fix build with recent versions of libx264. 
Fixes <https://bugs.gnu.org/32448>.
Reported by Clément Lassieur <clement@lassieur.org>.

* gnu/packages/video.scm (%vlc-libx264-compat.patch): New variable.
(vlc)[source](patches): New field.
 2018-08-16 17:06:41 +02:00
Ricardo Wurmus b64ce4b725
gnu: Add r-inspect. 
* gnu/packages/bioconductor.scm (r-inspect): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus cea4d360d4
gnu: Add r-rootsolve. 
* gnu/packages/cran.scm (r-rootsolve): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus fbdf05b1fc
gnu: Add r-proc. 
* gnu/packages/cran.scm (r-proc): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus 42744c1db6
gnu: Add ghc-chart. 
* gnu/packages/haskell.scm (ghc-chart): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus cfac79ba6b
gnu: ghc-texmath: Update to 0.11.0.1. 
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.11.0.1.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus cd4476032c
gnu: Add ghc-gtk2hs-buildtools. 
* gnu/packages/haskell.scm (ghc-gtk2hs-buildtools): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus 2e72967b2a
gnu: Add ghc-operational. 
* gnu/packages/haskell.scm (ghc-operational): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus 657d220d17
gnu: Add ghc-intervalmap. 
* gnu/packages/haskell.scm (ghc-intervalmap): New variable.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus ea6ffd3cea
gnu: Add ghc-missingh. 
* gnu/packages/haskell.scm (ghc-missingh): New variable.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 19395aec69
gnu: Add ghc-errorcall-eq-instance. 
* gnu/packages/haskell.scm (ghc-errorcall-eq-instance): New variable.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 7e2c8cb5fc
gnu: Add ghc-regex. 
* gnu/packages/haskell.scm (ghc-regex): New variable.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus de866854aa
gnu: Add ghc-double-conversion. 
* gnu/packages/haskell.scm (ghc-double-conversion): New variable.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus f8362eac6a
gnu: Add ghc-convertible. 
* gnu/packages/haskell.scm (ghc-convertible): New variable.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 970481f1f7
gnu: ghc-pandoc: Update to 2.2.1. 
* gnu/packages/haskell.scm (ghc-pandoc): Update to 2.2.1.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 178bd68116
gnu: ghc-vector-algorithms: Fix build errors. 
* gnu/packages/haskell.scm (ghc-vector-algorithms)[arguments]:
Allow build with newer version of vector; add phase to disable building of
broken QuickCheck tests.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 376a6df4a5
gnu: ghc-enclosed-exceptions: Update to 1.0.3. 
* gnu/packages/haskell.scm (ghc-enclosed-exceptions): Update to 1.0.3.
[arguments]: Disable tests.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 4aa46e40e8
gnu: ghc-http: Update to 4000.3.12. 
* gnu/packages/haskell-web.scm (ghc-http): Update to 4000.3.12.
[native-inputs]: Add ghc-httpd-shed, ghc-test-framework, and
ghc-test-framework-hunit.
[inputs]: Add ghc-case-insensitive, ghc-conduit, ghc-conduit-extra,
ghc-http-types, ghc-puremd5, and ghc-split.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 83c4a5bd38
gnu: ghc-blaze-html: Allow build with newer HUnit. 
* gnu/packages/haskell-web.scm (ghc-blaze-html)[arguments]: Allow newer HUnit.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus c437b8008b
gnu: ghc-streaming-commons: Update to 0.2.1.0. 
* gnu/packages/haskell.scm (ghc-streaming-commons): Update to 0.2.1.0.
[inputs]: Add ghc-async.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 990cd5ef50
gnu: ghc-resourcet: Update to 1.2.1. 
* gnu/packages/haskell.scm (ghc-resourcet): Update to 1.2.1.
[inputs]: Add ghc-unliftio-core.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus cdad36c39d
gnu: ghc-pandoc-types: Update to 1.17.5.1. 
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.17.5.1.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 7ad3d4fd4f
gnu: ghc-pandoc-types-for-pandoc-1: Loosen version constraints. 
* gnu/packages/haskell.scm (ghc-pandoc-types-for-pandoc-1)[arguments]: Allow
newer QuickCheck and HUnit.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus 5cb4620043
gnu: ghc-conduit: Update to 1.3.0.3. 
* gnu/packages/haskell.scm (ghc-conduit): Update to 1.3.0.3.
[inputs]: Add ghc-mono-traversable, ghc-silently, ghc-unliftio,
ghc-unliftio-core, and ghc-vector.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus c106c48ee7
gnu: ghc-conduit-extra: Update to 1.3.0. 
* gnu/packages/haskell.scm (ghc-conduit-extra): Update to 1.3.0.
[inputs]: Add ghc-typed-process.
 2018-08-16 17:04:12 +02:00
Ricardo Wurmus d5040b4419
gnu: Add ghc-typed-process. 
* gnu/packages/haskell.scm (ghc-typed-process): New variable.
 2018-08-16 17:04:11 +02:00
Ricardo Wurmus 74b30be027
gnu: ghc-mono-traversable: Update to 1.0.9.0. 
* gnu/packages/haskell.scm (ghc-mono-traversable): Update to 1.0.9.0.
 2018-08-16 17:04:11 +02:00
Ricardo Wurmus 37d79707e3
gnu: ghc-conduit-combinators: Update to 1.3.0. 
* gnu/packages/haskell.scm (ghc-conduit-combinators): Update to 1.3.0.
 2018-08-16 17:04:11 +02:00
Ricardo Wurmus 5c51cdb962
gnu: ghc-uuid: Allow building with newer HUnit. 
* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow newer HUnit.
 2018-08-16 17:04:11 +02:00
Ricardo Wurmus d9c36e5b7a
gnu: ghc-uuid-types: Allow building with newer HUnit. 
* gnu/packages/haskell.scm (ghc-uuid-types)[arguments]: Allow newer HUnit.
 2018-08-16 17:04:11 +02:00
Ricardo Wurmus 05916da70b
gnu: ghc-ansi-wl-pprint: Update to 0.6.8.2. 
* gnu/packages/haskell.scm (ghc-ansi-wl-pprint): Update to 0.6.8.2.
 2018-08-16 17:04:11 +02:00
Ricardo Wurmus a5f7a5f6ed
gnu: ghc-test-framework-hunit: Fix build with new HUnit. 
* gnu/packages/haskell-check.scm (ghc-test-framework-hunit)[arguments]: Allow
newer version of HUnit.
 2018-08-16 17:04:11 +02:00
Ricardo Wurmus f1ac3bba66
gnu: ghc-hunit: Update to 1.6.0.0. 
* gnu/packages/haskell-check.scm (ghc-hunit): Update to 1.6.0.0.
[inputs]: Add ghc-call-stack-boot.
 2018-08-16 17:04:11 +02:00
Ricardo Wurmus e42e9024c1
gnu: Add ghc-call-stack-boot. 
* gnu/packages/haskell.scm (ghc-call-stack-boot): New variable.
 2018-08-16 17:04:11 +02:00