ef8b9a771c
gnu: r-spams: Use predictable source URI.
...
* gnu/packages/statistics.scm (r-spams)[source]: Use predictable
URI.
2018-03-20 19:49:46 +01:00
d7a11f1a8d
gnu: pigx-chipseq: Update to 0.0.9.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.9.
[inputs]: Add coreutils and grep.
2018-03-20 19:47:37 +01:00
385e8614ef
gnu: Add python-logwrap.
...
* gnu/packages/python.scm (python-logwrap): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-20 19:47:37 +01:00
8c4bd04c86
gnu: python-ptyprocess: Update source URL.
...
* gnu/packages/python.scm (python-ptyprocess)[origin](source): Update URL.
2018-03-20 21:43:42 +03:00
576e0ae495
gnu: rofi: Update source hash.
...
The tarball was updated in-place with a bugfix; see
<https://github.com/DaveDavenport/rofi/issues/782 >.
* gnu/packages/xdisorg.scm (rofi)[source](sha256): Adjust hash.
[arguments]: Remove phase 'add-missing-configuration-files'.
2018-03-20 19:23:34 +01:00
4a78fd4617
Correct name and Email for ng0.
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* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-03-20 17:17:58 +01:00
f812145e3e
gnu: ruby-sanitize: Update to 4.6.3.
...
This fixes CVE-2018-3740.
* gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3.
2018-03-20 11:20:33 -04:00
32745b71e1
gnu: cdogs-sdl: Update to commit bab20313.
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Fixes <https://bugs.gnu.org/30623 >.
* gnu/packages/games.scm (cdogs-sdl): Update to commit
bab2031369b9ea2dbeb7eedbde10a43dd8ca83db.
[source]: Use git-fetch.
2018-03-20 22:33:18 +08:00
c56739df6b
gnu: Add r-dyn.
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* gnu/packages/cran.scm (r-dyn): New variable.
2018-03-20 15:00:52 +01:00
4f1e4f33a0
gnu: pigx-bsseq: Update to 0.0.8.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.
2018-03-20 14:56:44 +01:00
dc7e07c9b9
Merge branch 'staging'
2018-03-20 14:13:05 +01:00
616446ffbf
gnu: pigx-rnaseq: Update to 0.0.3.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3.
[inputs]: Add gzip.
2018-03-20 12:20:51 +01:00
c657716ede
gnu: dnsmasq: Fix description typos.
...
* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos.
2018-03-20 02:03:52 +01:00
4e6c51d4eb
gnu: dnsmasq: Update to 2.79.
...
* gnu/packages/dns.scm (dnsmasq): Update to 2.79.
2018-03-20 02:03:52 +01:00
a3e2b72ca9
gnu: certbot: Update to 0.22.1.
...
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1.
2018-03-20 01:40:07 +01:00
818e6d9704
gnu: python-cryptography: Update to 2.2.
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* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.
2018-03-20 01:25:10 +01:00
c9838530d3
gnu: imlib2: Update to 1.5.1.
...
* gnu/packages/image.scm (imlib2): Update to 1.5.1.
2018-03-20 01:24:48 +01:00
264cb77646
gnu: imagemagick: Update to 6.9.9-39.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39.
2018-03-20 01:09:16 +01:00
0d729c5b14
gnu: zziplib: Correct license.
...
* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1.
2018-03-20 01:06:43 +01:00
3f986ff657
gnu: zziplib: Update to 0.13.69.
...
* gnu/packages/compression.scm (zziplib): Update to 0.13.69.
[home-page]: Use new GitHub home.
[source](uri): Adjust accordingly.
[arguments]: Remove.
2018-03-20 00:56:04 +01:00
712be306a8
gnu: rofi: Update to 1.5.1.
...
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1.
2018-03-20 00:34:00 +01:00
dbc75dadb5
Revert "Revert "gnu: patchelf: Update argument phase.""
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This change only affects armhf, which doesn't use PatchELF. My bad!
This reverts commit b1d096f869
2018-03-20 00:20:59 +01:00
061f204dcd
Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case."
...
This requires adding (guix utils) to the build inputs, and causes too many
rebuilds for now.
This reverts commit 24a2e9172a
2018-03-20 00:06:50 +01:00
b1d096f869
Revert "gnu: patchelf: Update argument phase."
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It causes too many rebuilds this late in the 'staging' cycle.
This reverts commit c1d1cd817c
2018-03-20 00:06:34 +01:00
d41ad1d553
gnu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490].
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* gnu/packages/web.scm (uwsgi): Update to 2.0.17.
[source]: Use HTTPS URL.
2018-03-19 18:56:26 -04:00
cfbf6de18c
gnu: mcron: Update to 1.1 and deprecate "mcron2".
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* gnu/packages/guile.scm (mcron): Update to 1.1.
[native-inputs]: Add TZDATA-FOR-TESTS.
[arguments]: New field.
(mcron2): Define using 'deprecated-package'.
* gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'.
* doc/guix.texi (Scheduled Job Execution): Likewise.
* gnu/tests/base.scm (%mcron-os): Remove comment about mcron2.
2018-03-19 23:19:49 +01:00
f88028c432
gnu: linux-libre: Update to 4.15.11.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11.
(%linux-libre-hash): Update hash.
2018-03-19 18:02:29 -04:00
dd07a549d0
gnu: linux-libre@4.14: Update to 4.14.28.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28.
(%linux-libre-4.14-hash): Update hash.
2018-03-19 18:01:49 -04:00
cc367c7c7a
gnu: linux-libre@4.9: Update to 4.9.88.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88.
2018-03-19 18:01:12 -04:00
75abeb73e3
gnu: linux-libre@4.4: Update to 4.4.122.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122.
2018-03-19 18:00:37 -04:00
9010123565
gnu: weechat: Update to 2.1.
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* gnu/packages/irc.scm (weechat): Update to 2.1.
2018-03-19 22:26:41 +01:00
1d9b041c2e
gnu: perl-xml-compile-soap: Update to 3.24.
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* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24.
2018-03-19 22:26:41 +01:00
fa3fff430b
gnu: perl-xml-simple: Update to 2.25.
...
* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25.
2018-03-19 22:26:40 +01:00
8d0d14479d
gnu: perl-math-random-secure: Fix typo.
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* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix
the spelling of ‘millennia’.
2018-03-19 22:26:30 +01:00
24a2e9172a
build-system/meson: Use 'target-arm32?' for armhf-linux case.
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* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux
detection with 'target-arm32?' macro.
2018-03-19 22:07:37 +02:00
9dbdc830f6
gnu: pigx-bsseq: Update to 0.0.7.
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* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7.
[inputs]: Add coreutils, sed, and grep.
2018-03-19 21:06:51 +01:00
096589035e
gnu: bismark: Fix references to gunzip.
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* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.
2018-03-19 21:06:51 +01:00
51237011bf
gnu: pigx-scrnaseq: Update to 0.0.3.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3.
[inputs]: Add coreutils and perl.
2018-03-19 21:06:50 +01:00
203631d9ad
patchelf: Use 'https' for source uri.
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* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
2018-03-19 21:48:43 +02:00
05666fb8db
patchelf: Use 'https' for source uri.
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* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
2018-03-19 21:48:06 +02:00
c1d1cd817c
gnu: patchelf: Update argument phase.
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* gnu/packages/elf.scm (patchelf)[arguments]: Use 'modify-phases'
syntax. Replace 'system*' with 'invoke'.
2018-03-19 21:48:06 +02:00
c24f1f1614
gnu: patchelf: Use 'target-arm32?' for armhf-linux case.
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* gnu/packages/elf.scm (patchelf)[inputs]: Replace armhf-linux detection
logic with 'target-arm32?' macro.
[arguments]: Same.
2018-03-19 21:48:03 +02:00
9687d4042a
gnu: python-paramiko: Update to 2.1.5.
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* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko):
Update to 2.1.5.
2018-03-19 14:34:55 -04:00
6969ad0edd
gnu: python-pynacl: Update to 1.2.0.
...
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0.
[native-inputs]: Add python-hypothesis.
2018-03-19 12:37:51 -04:00
d8f08c85ad
gnu: pigx: Update to 0.0.2.
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* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2.
2018-03-19 16:55:43 +01:00
d93a1c276b
gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1.
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* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace
ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19 16:55:43 +01:00
504be7db58
gnu: bash-completion: Update to 2.8.
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* gnu/packages/bash.scm (bash-completion): Update to 2.8.
* gnu/packages/patches/bash-completion-directories.patch: Update context.
2018-03-19 14:44:13 +01:00
39c6af4774
gnu: hdparm: Update to 9.55.
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* gnu/packages/linux.scm (hdparm): Update to 9.55.
2018-03-19 14:41:47 +01:00
eaa69a7996
gnu: libtirpc: Update to 1.0.3.
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* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3.
[source]: Remove patch.
* gnu/packages/patches/libtirpc-missing-headers.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-03-19 13:25:27 +01:00
86ce44c503
gnu: libtirpc: Always return #t from phases.
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* gnu/packages/onc-rpc.scm (libtirpc)[arguments]: End phase with #t.
2018-03-19 13:25:26 +01:00
Tobias Geerinckx-Rice