d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
2019-01-12 23:35:19 +01:00
cad6fb2dec
gnu: Add r-plgem.
...
* gnu/packages/bioconductor.scm (r-plgem): New variable.
2019-01-12 23:35:19 +01:00
45dcd7dcfd
gnu: r-rots: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
0b469ee225
gnu: r-glimma: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
7f2b1c4af0
gnu: r-goseq: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
add2b19561
gnu: r-chippeakanno: Update to 3.16.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
2019-01-12 23:35:18 +01:00
c476edc2cd
gnu: r-rtracklayer: Update to 1.42.1.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.1.
2019-01-12 23:35:18 +01:00
1e107b0960
gnu: r-scater: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
0f268bb275
gnu: r-singlecellexperiment: Update to 1.4.1.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.1.
2019-01-12 23:35:18 +01:00
a0224bd4f6
gnu: r-rhdf5lib: Update to 1.4.2.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.2.
2019-01-12 23:35:18 +01:00
40561d0249
gnu: r-hdf5array: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
ad10b3979d
gnu: r-qvalue: Update to 2.14.1.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.1.
2019-01-12 23:35:18 +01:00
19cacb5a2d
gnu: r-gviz: Update to 1.26.4.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.4.
2019-01-12 23:35:18 +01:00
c80595935d
gnu: r-biovizbase: Update to 1.30.1.
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* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.1.
2019-01-12 23:35:18 +01:00
27194effd7
gnu: r-ensembldb: Update to 2.6.3.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.3.
2019-01-12 23:35:18 +01:00
43931ff72f
gnu: r-dirichletmultinomial: Update to 1.24.1.
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.1.
2019-01-12 23:35:18 +01:00
15d89fe9f8
gnu: r-gage: Update to 2.32.1.
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* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.1.
2019-01-12 23:35:18 +01:00
4615cf9f1a
gnu: r-annotationhub: Update to 2.14.2.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.2.
2019-01-12 23:35:18 +01:00
ab4a862ab8
gnu: r-edaseq: Update to 2.16.3.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.3.
[propagated-inputs]: Add r-biocmanager.
2019-01-12 23:35:18 +01:00
3bdc41b352
gnu: r-deseq: Update to 1.34.1.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
9abf344f8b
gnu: r-msnid: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.1.
2019-01-12 23:35:17 +01:00
880ed11e9f
gnu: r-msnbase: Update to 2.8.3.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.3.
2019-01-12 23:35:17 +01:00
6451af78e1
gnu: r-mzid: Update to 1.20.1.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.1.
2019-01-12 23:35:17 +01:00
a4f038dc97
gnu: r-mzr: Update to 2.16.1.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.1.
2019-01-12 23:35:17 +01:00
46508c3a92
gnu: r-sva: Update to 3.30.1.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.1.
2019-01-12 23:35:17 +01:00
c20426ec5c
gnu: r-methylkit: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.1.
2019-01-12 23:35:17 +01:00
5c72ebafeb
gnu: r-copywriter: Update to 2.14.1.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.1.
2019-01-12 23:35:17 +01:00
86162c767e
gnu: r-rhdf5: Update to 2.26.2.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.2.
2019-01-12 23:35:17 +01:00
4c7b9222dd
gnu: r-tximport: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.1.
2019-01-12 23:35:17 +01:00
4bfde52178
gnu: r-genomicalignments: Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.1.
2019-01-12 23:35:17 +01:00
1fa12b2f06
gnu: r-biostrings: Update to 2.50.2.
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* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.2.
2019-01-12 23:35:17 +01:00
d4fc834cf7
gnu: r-biocparallel: Update to 1.16.5.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.5.
2019-01-12 23:35:17 +01:00
52c977a05b
gnu: r-limma: Update to 3.38.3.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.3.
2019-01-12 23:35:17 +01:00
3fd48846eb
gnu: r-variantannotation: Update to 1.28.8.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.8.
2019-01-12 23:35:17 +01:00
a619850930
gnu: r-edger: Update to 3.24.3.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.3.
2019-01-12 23:35:17 +01:00
00f105fe20
gnu: r-biocviews: Update to 1.50.10.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.10.
2019-01-12 23:35:16 +01:00
9c1b2b2ae0
gnu: r-systempiper: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.1.
2019-01-12 23:35:16 +01:00
3b8c884285
gnu: r-rbgl: Update to 1.58.1.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.1.
2019-01-12 23:35:16 +01:00
ffe16ef33c
gnu: r-dexseq: Update to 1.28.1.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.1.
2019-01-12 23:35:16 +01:00
f7e95c50b8
gnu: r-deseq2: Update to 1.22.2.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.2.
2019-01-12 23:35:16 +01:00
feb561f721
gnu: r-scran: Update to 1.10.2.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.2.
2019-01-12 23:35:16 +01:00
fd7301676e
gnu: r-sjplot: Update to 2.6.2.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.6.2.
2019-01-12 23:35:16 +01:00
e45f4a4dab
gnu: r-sjmisc: Update to 2.7.7.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.7.
2019-01-12 23:35:16 +01:00
5e8282a4a0
gnu: r-rmpi: Update to 0.6-9.
...
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.
2019-01-12 23:35:16 +01:00
80c4e75b87
gnu: r-seqminer: Update to 7.1.
...
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 7.1.
2019-01-12 23:35:16 +01:00
3bc0667f3c
gnu: r-bookdown: Update to 0.9.
...
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.9.
2019-01-12 23:35:16 +01:00
c3e5b456be
gnu: r-protviz: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-protviz): Update to 0.4.0.
2019-01-12 23:35:16 +01:00
209e504bb1
gnu: r-ontologyindex: Update to 2.5.
...
* gnu/packages/cran.scm (r-ontologyindex): Update to 2.5.
2019-01-12 23:35:16 +01:00
e041740289
gnu: r-chemometricswithr: Update to 0.1.13.
...
* gnu/packages/cran.scm (r-chemometricswithr): Update to 0.1.13.
2019-01-12 23:35:16 +01:00
9ad5f4ba19
gnu: r-grimport: Update to 0.9-1.1.
...
* gnu/packages/cran.scm (r-grimport): Update to 0.9-1.1.
2019-01-12 23:35:16 +01:00
16d296bbd1
gnu: r-shades: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-shades): Update to 1.3.1.
2019-01-12 23:35:15 +01:00
6eab52e0dd
gnu: r-ggeffects: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-ggeffects): Update to 0.8.0.
2019-01-12 23:35:15 +01:00
de7631b278
gnu: r-slam: Update to 0.1-44.
...
* gnu/packages/cran.scm (r-slam): Update to 0.1-44.
2019-01-12 23:35:15 +01:00
2652e2534f
gnu: r-refgenome: Update to 1.7.3.1.
...
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.3.1.
2019-01-12 23:35:15 +01:00
f0867a0e8b
gnu: r-findpython: Update to 1.0.4.
...
* gnu/packages/cran.scm (r-findpython): Update to 1.0.4.
2019-01-12 23:35:15 +01:00
12502bf4e8
gnu: r-prediction: Update to 0.3.6.1.
...
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.1.
2019-01-12 23:35:15 +01:00
fbd263cd4a
gnu: r-abn: Update to 1.3.
...
* gnu/packages/cran.scm (r-abn): Update to 1.3.
2019-01-12 23:35:15 +01:00
1b1444012b
gnu: r-sjstats: Update to 0.17.3.
...
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.3.
2019-01-12 23:35:15 +01:00
9df469a1d4
gnu: r-emmeans: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.1.
2019-01-12 23:35:15 +01:00
1afe56444e
gnu: r-glmmtmb: Update to 0.2.3.
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* gnu/packages/cran.scm (r-glmmtmb): Update to 0.2.3.
2019-01-12 23:35:15 +01:00
1417d5f1d5
gnu: r-rio: Update to 0.5.16.
...
* gnu/packages/cran.scm (r-rio): Update to 0.5.16.
2019-01-12 23:35:15 +01:00
962304c31c
gnu: r-arules: Update to 1.6-2.
...
* gnu/packages/cran.scm (r-arules): Update to 1.6-2.
2019-01-12 23:35:15 +01:00
f2fc34f241
gnu: r-fnn: Update to 1.1.2.2.
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* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.2.
2019-01-12 23:35:15 +01:00
f0fe1a5a45
gnu: r-shinyace: Update to 0.3.3.
...
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.3.
2019-01-12 23:35:15 +01:00
5f1f11049f
gnu: r-cubature: Update to 2.0.3.
...
* gnu/packages/cran.scm (r-cubature): Update to 2.0.3.
2019-01-12 23:35:15 +01:00
7abb15f2bb
gnu: r-tseries: Update to 0.10-46.
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* gnu/packages/cran.scm (r-tseries): Update to 0.10-46.
2019-01-12 23:35:15 +01:00
9d83132757
gnu: r-statnet-common: Update to 4.2.0.
...
* gnu/packages/cran.scm (r-statnet-common): Update to 4.2.0.
2019-01-12 23:35:14 +01:00
7e9e9c9c46
gnu: r-tinytex: Update to 0.10.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.10.
2019-01-12 23:35:14 +01:00
fc00a1f0fc
gnu: r-pillar: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.3.1.
2019-01-12 23:35:14 +01:00
111516f9d6
gnu: r-gclus: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-gclus): Update to 1.3.2.
2019-01-12 23:35:14 +01:00
ed46a05c75
gnu: r-laeken: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-laeken): Update to 0.5.0.
2019-01-12 23:35:14 +01:00
fc74de42da
gnu: r-ddalpha: Update to 1.3.8.
...
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.8.
2019-01-12 23:35:14 +01:00
221b3b164d
gnu: r-rmysql: Update to 0.10.16.
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* gnu/packages/cran.scm (r-rmysql): Update to 0.10.16.
2019-01-12 23:35:14 +01:00
1c6d199ee8
gnu: r-mitml: Update to 0.3-7.
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* gnu/packages/cran.scm (r-mitml): Update to 0.3-7.
2019-01-12 23:35:14 +01:00
5703991841
gnu: r-recipes: Add missing input.
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* gnu/packages/cran.scm (r-recipes)[propagated-inputs]: Add r-withr.
2019-01-12 23:35:14 +01:00
77f97229c9
gnu: r-dimred: Add missing input.
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* gnu/packages/cran.scm (r-dimred)[propagated-inputs]: Add r-magrittr.
2019-01-12 23:35:14 +01:00
8f88701491
gnu: r-lava: Update to 1.6.4.
...
* gnu/packages/cran.scm (r-lava): Update to 1.6.4.
2019-01-12 23:35:14 +01:00
397dba01c6
gnu: r-powerlaw: Update to 0.70.2.
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* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.2.
2019-01-12 23:35:14 +01:00
72c4987506
gnu: r-circlize: Update to 0.4.5.
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* gnu/packages/cran.scm (r-circlize): Update to 0.4.5.
2019-01-12 23:35:14 +01:00
422dea1774
gnu: r-ps: Update to 1.3.0.
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* gnu/packages/cran.scm (r-ps): Update to 1.3.0.
2019-01-12 23:35:14 +01:00
dcf89cc0cf
gnu: r-haven: Update to 2.0.0.
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* gnu/packages/cran.scm (r-haven): Update to 2.0.0.
2019-01-12 23:35:14 +01:00
69aad34ae0
gnu: r-feather: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-feather): Update to 0.3.2.
2019-01-12 23:35:13 +01:00
1add168ab5
gnu: r-htmltable: Update to 1.13.1.
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* gnu/packages/cran.scm (r-htmltable): Update to 1.13.1.
2019-01-12 23:35:13 +01:00
37349c717e
gnu: r-httpuv: Update to 1.4.5.1.
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* gnu/packages/cran.scm (r-httpuv): Update to 1.4.5.1.
2019-01-12 23:35:13 +01:00
0c025a7f79
gnu: r-clipr: Update to 0.5.0.
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* gnu/packages/cran.scm (r-clipr): Update to 0.5.0.
2019-01-12 23:35:13 +01:00
2e4fc4ac62
gnu: r-caret: Update to 6.0-81.
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* gnu/packages/statistics.scm (r-caret): Update to 6.0-81.
2019-01-12 23:35:13 +01:00
aa72d7f7f5
gnu: r-quantreg: Update to 5.38.
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* gnu/packages/statistics.scm (r-quantreg): Update to 5.38.
2019-01-12 23:35:13 +01:00
9b7df80b9b
gnu: r-rcppeigen: Update to 0.3.3.5.0.
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* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.5.0.
2019-01-12 23:35:13 +01:00
bcc17f7f11
gnu: r-rrcov: Update to 1.4-7.
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* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-7.
2019-01-12 23:35:13 +01:00
70ee5ab137
gnu: r-cowplot: Update to 0.9.4.
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* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.4.
2019-01-12 23:35:13 +01:00
7213ef07c6
gnu: r-rann: Update to 2.6.1.
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* gnu/packages/statistics.scm (r-rann): Update to 2.6.1.
2019-01-12 23:35:13 +01:00
2c8594d963
gnu: r-sfsmisc: Update to 1.1-3.
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* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-3.
2019-01-12 23:35:13 +01:00
54ebdf6f74
gnu: r-rmarkdown: Update to 1.11.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.11.
[propagated-inputs]: Remove r-rprojroot.
2019-01-12 23:35:13 +01:00
fb45934202
gnu: r-rstudioapi: Update to 0.9.0.
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* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.9.0.
2019-01-12 23:35:13 +01:00
8f49d99a84
gnu: r-git2r: Update to 0.24.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.24.0.
2019-01-12 23:35:13 +01:00
c12e429348
gnu: r-httr: Update to 1.4.0.
...
* gnu/packages/statistics.scm (r-httr): Update to 1.4.0.
2019-01-12 23:35:13 +01:00
02c89c5812
gnu: r-commonmark: Update to 1.7.
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* gnu/packages/statistics.scm (r-commonmark): Update to 1.7.
2019-01-12 23:35:12 +01:00
fe8c44502b
gnu: r-checkmate: Update to 1.9.0.
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* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.0.
2019-01-12 23:35:12 +01:00
ca4861c602
gnu: r-backports: Update to 1.1.3.
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* gnu/packages/statistics.scm (r-backports): Update to 1.1.3.
2019-01-12 23:35:12 +01:00
23347dc353
gnu: r-dbplyr: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.3.0.
2019-01-12 23:35:12 +01:00
f12ed3664d
gnu: r-tibble: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.0.
[propagated-inputs]: Add r-fansi and r-pkgconfig.
2019-01-12 23:35:12 +01:00
c668a95861
gnu: r-rlang: Update to 0.3.1.
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* gnu/packages/statistics.scm (r-rlang): Update to 0.3.1.
2019-01-12 23:35:12 +01:00
495866a9d7
gnu: r-knitr: Update to 1.21.
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* gnu/packages/statistics.scm (r-knitr): Update to 1.21.
[propagated-inputs]: Add r-xfun.
2019-01-12 23:35:12 +01:00
bf3aded0cf
gnu: r-markdown: Update to 0.9.
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* gnu/packages/statistics.scm (r-markdown): Update to 0.9.
2019-01-12 23:35:12 +01:00
eae93bd3f2
gnu: r-bh: Update to 1.69.0-1.
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* gnu/packages/statistics.scm (r-bh): Update to 1.69.0-1.
2019-01-12 23:35:12 +01:00
b6e27673e6
gnu: r-pheatmap: Update to 1.0.12.
...
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12.
2019-01-12 23:35:12 +01:00
ca2bc7e037
gnu: r-mgcv: Update to 1.8-26.
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* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26.
2019-01-12 23:35:12 +01:00
60f1bce09f
gnu: r-codetools: Update to 0.2-16.
...
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16.
2019-01-12 23:35:12 +01:00
3dbd87f504
gnu: r-class: Update to 7.3-15.
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* gnu/packages/statistics.scm (r-class): Update to 7.3-15.
2019-01-12 23:35:12 +01:00
35cf4874cc
gnu: r-survival: Update to 2.43-3.
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* gnu/packages/statistics.scm (r-survival): Update to 2.43-3.
2019-01-12 23:35:12 +01:00
11a36548d9
gnu: r-argparse: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-argparse): Update to 2.0.0.
[propagated-inputs]: Add r-r6; remove r-proto.
2019-01-12 23:35:12 +01:00
527c605598
gnu: r-callr: Update to 3.1.1.
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* gnu/packages/cran.scm (r-callr): Update to 3.1.1.
[propagated-inputs]: Remove r-base64enc.
2019-01-12 23:35:12 +01:00
b140569e18
gnu: r-readxl: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-readxl): Update to 1.2.0.
[propagated-inputs]: Add r-progress.
2019-01-12 23:35:11 +01:00
0aad198e2b
gnu: r-pracma: Update to 2.2.2.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
2019-01-12 23:35:11 +01:00
44c69a536e
gnu: r-rcpparmadillo: Update to 0.9.200.5.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0.
2019-01-12 23:35:11 +01:00
0e87bf0177
gnu: r-processx: Update to 3.2.1.
...
* gnu/packages/cran.scm (r-processx): Update to 3.2.1.
[propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat.
2019-01-12 23:35:11 +01:00
2766d3436a
gnu: r-sjlabelled: Update to 1.0.16.
...
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16.
[propagated-inputs]: Remove r-tibble and r-tidyselect.
2019-01-12 23:35:11 +01:00
813d9c51e3
gnu: r-broom: Update to 0.5.1.
...
* gnu/packages/cran.scm (r-broom): Update to 0.5.1.
[propagated-inputs]: Add r-generics.
2019-01-12 23:35:11 +01:00
25c67ecfc6
gnu: Add r-generics.
...
* gnu/packages/cran.scm (r-generics): New variable.
2019-01-12 23:35:11 +01:00
646e1ef059
gnu: r-curl: Update to 3.3.
...
* gnu/packages/cran.scm (r-curl): Update to 3.3.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
2019-01-12 23:35:11 +01:00
ef91530362
gnu: r-readr: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.3.1.
[propagated-inputs]: Add r-clipr and r-crayon.
2019-01-12 23:35:11 +01:00
48102ce123
gnu: r-mvabund: Update to 4.0.1.
...
* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1.
2019-01-12 23:35:11 +01:00
04a18a81ae
gnu: r-writexl: Update to 1.1.
...
* gnu/packages/cran.scm (r-writexl): Update to 1.1.
2019-01-12 23:35:11 +01:00
a2315c6702
gnu: r-jsonlite: Update to 1.6.
...
* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.
2019-01-12 23:35:11 +01:00
ea600ff709
gnu: python-pillow: Update homepage.
...
* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
2019-01-12 16:39:26 -05:00
acbf312573
gnu: python-pillow: Update to 5.4.0
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* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
2019-01-12 16:38:36 -05:00
146c6b62bf
gnu: Sort package modules in (gnu packages guile).
...
* gnu/packages/guile.scm: Sort list of gnu/packages modules.
2019-01-12 12:14:31 +01:00
7d8baff97b
gnu: impressive: Update to 0.12.0.
...
* gnu/packages/pdf.scm (impressive): Update to 0.12.0.
2019-01-12 12:14:31 +01:00
24155bf40d
gnu: Move Java compression packages to new module.
...
* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable.
(java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz):
Move these variables from here...
* gnu/packages/java-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module
references.
2019-01-12 12:14:28 +01:00
1704367719
gnu: Add Bochs.
...
* gnu/packages/virtualization.scm (bochs): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-11 17:09:20 -05:00
81c64748ba
gnu: Stellarium: Update to 0.18.3.
...
* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3.
[arguments]: Skip a broken test.
2019-01-11 17:07:55 -05:00
1ac0c1b899
gnu: opendht: Make argon2 a propagated input so that its .pc is found.
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* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2.
[propagated-inputs]: Add it here.
2019-01-11 19:48:00 +01:00
e0fa641380
gnu: opendht: Use jsoncpp and restbed.
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* gnu/packages/crypto.scm (opendht): Move definition to networking.scm.
* gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed.
2019-01-11 19:48:00 +01:00
362fba83dd
gnu: Add restbed.
...
* gnu/packages/networking.scm (restbed): New variable.
2019-01-11 19:48:00 +01:00
50e1843b3a
gnu: libupnp: Update to 1.6.25.
...
* gnu/packages/upnp.scm (libupnp): Update to 1.6.25.
2019-01-11 19:48:00 +01:00
46b082f97f
gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.
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Using LIBRARY_PATH was introduced in
16b8aff85b
2019-01-11 16:35:52 +01:00
5a26f879c3
Revert "gnu: emacs-ghub: Update to 3.2.0."
...
This change should be applied once we update our magit package.
This reverts commit b96f0e6ff9
2019-01-11 13:32:31 +01:00
88d7101798
gnu: Add emacs-general.
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[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]]
* gnu/packages/emacs.scm (emacs-general): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-11 12:14:38 +01:00
cb2ad4f508
gnu: wine-staging: Hard-code vulkan loader.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Fix indentation.
* gnu/packages/wine.scm (wine-staging)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64-staging)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
2019-01-11 11:15:13 +01:00
e7c6bc45ed
gnu: jamm: Remove broken "build" phase.
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* gnu/packages/bioinformatics.scm (jamm)[arguments]: Remove "build" phase.
2019-01-11 06:08:43 +01:00
adf0b482eb
gnu: gexiv2: Update to 0.10.10.
...
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.10.
2019-01-10 18:45:41 -05:00
d4d9a1ece0
gnu: Update texlive packages.
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* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to
texlive-2018.2, revision 49435.
* gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data,
texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname,
texlive-fonts-cm, texlive-tex-plain, texlive-latex-base,
texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek,
texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages,
texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls,
texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox,
texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois,
texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar,
texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip,
texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex,
texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update
hashes.
(texlive-latex-fontspec)[arguments]: Remove custom build target.
(texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error".
(texlive-latex-xkeyval): New variable.
(texlive-latex-pstool)[source]: Fetch from new location.
[build-system]: Use trivial-build-system.
[arguments]: Write simple builder.
[propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and
texlive-latex-xkeyval.
[synopsis]: Fix typo.
2019-01-10 22:43:09 +01:00
c954fe6622
gnu: irssi: Update to 1.1.2 [fixes CVE-2019-5882].
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* gnu/packages/irc.scm (irssi): Update to 1.1.2.
2019-01-10 16:05:42 -05:00
ffcd282702
gnu: docker: Booby-trap "Command" and "LookPath" calls.
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* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Booby-trap "Command" and "LookPath" calls.
2019-01-10 21:29:53 +01:00
6a6e5d84da
gnu: opendht: Update to 1.8.1.
...
* gnu/packages/crypto.scm (opendht): Update to 1.8.1.
[source]: Remove snippet that deletes argon2, which is no longer bundled.
[arguments]: Add "--with-argon2" to use system argon2.
[license]: Update to GPLv3+ following the README and source headers.
2019-01-10 21:09:06 +01:00
6fe6840dab
gnu: Add libsecp256k1.
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* gnu/packages/crypto.scm (libsecp256k1): New variable.
2019-01-10 21:09:06 +01:00
35ac66eec1
gnu: crypto++: Update to 8.0.0.
...
* gnu/packages/crypto.scm (crypto++): Update to 8.0.0.
[arguments]: Build shared library.
[arguments]: Generate .pc file.
2019-01-10 21:09:06 +01:00
dbd346ae88
gnu: sct: Correct license.
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* gnu/packages/xdisorg.scm (sct)[license]: Change to non-copyleft.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:23 +01:00
7d4b3e1e2b
gnu: Add pwsafe
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* gnu/packages/password-utils.scm (pwsafe): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:22 +01:00
394207c1ee
gnu: Add missing copyright line.
...
* gnu/packages/video.scm: Add missing copyright line for commit 20b4aa6
2019-01-10 08:59:44 +01:00
1d591432c7
gnu: wlstream: Fix indentation.
...
* gnu/packages/video.scm (wlstream): Fix indentation.
2019-01-10 08:53:36 +01:00
20b4aa6bab
gnu: Add wlstream.
...
* gnu/packages/video.scm (wlstream): New variable.
2019-01-10 08:41:03 +01:00
1f61cc102e
gnu: ffmpeg: Add libdrm support.
...
* gnu/packages/video.scm (ffmpeg): Add libdrm support.
2019-01-10 08:20:39 +01:00
6b6a25d4d2
gnu: docker: Fix more paths.
...
* gnu/packages/docker.scm (docker)[inputs]: Add dbus, git.
[arguments]<#:phases>[patch-paths]: Use them.
2019-01-10 05:40:53 +01:00
60893e5c84
gnu: linux-libre: Update to 4.20.1.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.1.
(%linux-libre-hash): Update hash.
2019-01-09 23:00:07 -05:00
f7ed0b1db5
gnu: linux-libre@4.19: Update to 4.19.14.
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* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.14.
(%linux-libre-4.19-hash): Update hash.
2019-01-09 23:00:05 -05:00
166c6ad39c
gnu: linux-libre@4.14: Update to 4.14.92.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.92.
(%linux-libre-4.14-hash): Update hash.
2019-01-09 23:00:03 -05:00
c37f52e3be
gnu: linux-libre@4.9: Update to 4.9.149.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.149.
2019-01-09 23:00:00 -05:00
28f6b27543
gnu: linux-libre: Enable pressure stall information.
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* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Enable CONFIG_PSI.
2019-01-09 22:59:58 -05:00
8cd958608c
gnu: docker: Disable tests requiring elevated permissions.
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* gnu/packages/docker.scm (docker)[arguments]<#:phases>[delete-failing-tests]:
Disable tests requiring elevated permissions.
2019-01-10 04:46:29 +01:00
8b487bf84f
gnu: containerd: Fix more paths.
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* gnu/packages/docker.scm (containerd)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
2019-01-10 04:34:57 +01:00
58adcaa19f
gnu: docker: Fix more paths.
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* gnu/packages/docker.scm (docker)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
2019-01-10 04:33:47 +01:00
65a7e35cb5
gnu: docker: Substitute LookPath of literals generally.
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* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Substitute LookPath of literals generally.
2019-01-10 03:12:32 +01:00
e9b316453e
gnu: Add docker-cli.
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* gnu/packages/docker.scm (docker-cli): New variable.
2019-01-10 03:01:12 +01:00
f87ea24a82
gnu: Add docker.
...
* gnu/packages/docker.scm (docker): New variable.
* gnu/packages/patches/docker-engine-test-noinstall.patch: New file.
* gnu/packages/patches/docker-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-01-10 02:49:14 +01:00
fc51c28ae8
gnu: Blender: Update to a beta release of 2.80.
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Fixes <https://bugs.gnu.org/33608 > and <https://bugs.gnu.org/33882 >.
* gnu/packages/graphics.scm (blender): Update to 2.80-beta-0.3c3d80e.
[source]: Fetch from the Git repository.
[inputs]: Use OpenJPEG 2. Add Numpy.
[arguments]: Specify the location of Numpy. Remove some configure flags that are
no longer used. Comment out the 'fix-broken-import' phase because the
file it patches doesn't exist in the Git sources.
[description]: Add a warning about the beta status.
2019-01-09 18:54:16 -05:00
b96f0e6ff9
gnu: emacs-ghub: Update to 3.2.0.
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* gnu/packages/emacs.scm (emacs-ghub): Update to 3.2.0.
[source]: Use 'git-fetch'.
[propagated-inputs]: Add emacs-dash, emacs-graphql,
emacs-let-alist, emacs-treepy.
2019-01-09 22:40:32 +01:00
9bc7dd62b4
gnu: emacs-magit-popup: Update to 2.12.5.
...
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.5.
2019-01-09 22:40:25 +01:00
8d59ef68cb
gnu: emacs-with-editor: Update to 2.8.0.
...
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.8.0.
[source]: Use 'git-fetch'.
2019-01-09 22:40:13 +01:00
5b07f06804
gnu: Add emacs-graphql.
...
* gnu/packages/emacs.scm (emacs-graphql): New variable.
2019-01-09 22:40:02 +01:00
abb8dff054
gnu: Add emacs-treepy.
...
* gnu/packages/emacs.scm (emacs-treepy): New variable.
2019-01-09 22:38:22 +01:00
56c50c71b5
gnu: emacs-emacsql: Update to 3.0.0.
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* gnu/packages/emacs.scm (emacs-emacsql): Update to 3.0.0.
[source]: Use 'git-fetch'.
[arguments]: Remove unnecessary fix.
2019-01-09 22:38:06 +01:00
d4e915f9b5
gnu: emacs-closql: Update to 1.0.0.
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* gnu/packages/emacs.scm (emacs-closql): Update to 1.0.0.
[source]: Use 'git-fetch'.
2019-01-09 22:37:52 +01:00
817e09c174
gnu: Django: Update to 1.11.18 [fixes CVE-2019-3498].
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* gnu/packages/django.scm (python-django, python2-django): Update to 1.11.18.
2019-01-09 15:44:36 -05:00
e82c98abe9
gnu: aria2: Fix CVE-2019-3500.
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* gnu/packages/patches/aria2-CVE-2019-3500.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bittorrent.scm (aria2)[source]: Use it.
2019-01-09 15:38:19 -05:00
45ee3fde87
gnu: hashcat: Update to 5.1.0.
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* gnu/packages/password-utils.scm (hashcat): Update to 5.1.0.
2019-01-09 14:05:20 -05:00
f73b7bf6e2
gnu: fasm: Update comments.
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* gnu/packages/assembly.scm (fasm): Update comments.
2019-01-09 19:33:28 +01:00
cb95e79f14
gnu: fasm: Fix grammatical errors in description.
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* gnu/packages/assembly.scm (fasm)[description]: Modify.
2019-01-09 19:33:27 +01:00
1bde3d2cbf
gnu: Add dev86.
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* gnu/packages/assembly.scm (dev86): New variable.
2019-01-09 19:33:27 +01:00
ab7aa06cac
gnu: python-pygit2: Update to 0.27.3.
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* gnu/packages/python.scm (python-pygit2): Update to 0.27.3.
[arguments]: Add custom phase to compile with cffi support. Add custom
phase to not require specific versions of python-cffi.
[native-inputs]: Add python-pytest.
2019-01-09 20:25:50 +02:00
1b504b498a
gnu: libgit2: Update to 0.27.7.
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* gnu/packages/version-control.scm (libgit2): Update to 0.27.7.
2019-01-09 18:47:57 +01:00
037c3b0ea2
gnu: emacs-irony-mode: Remove propagated input
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emacs-irony-mode finds its server binary because its a propagated input and is
in the path. We can substitute the variable `irony-server-install-prefix` to
not propagate the input and keep the binary isolated from the user.
* gnu/packages/emacs.scm (emacs-irony-mode):
[propagated-inputs] Remove propagated inputs
[inputs] Add emacs-irony-mode-server
[arguments] Add phase substituting the variable of the server path
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:57 +01:00
ecf7e4ea43
gnu: emacs-ggtags: Don't require GNU Global in path
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emacs-ggtags relies on the GNU Global tools (global and gtags) to be available
in the path. This way it will grab some random executable if it will find
executables at all.
This is fixed by setting the prefix to GNU Global in the store. This way
emacs-ggtags will use specific deterministic executables.
* gnu/packages/emacs.scm (emacs-ggtags):
[inputs]: Add GNU Global to the inputs
[arguments]: Add a phase for substituting the right path to the executables
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:57 +01:00
b2a5ef2e94
gnu: e2fsprogs: Update to 1.44.5.
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* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:57 +01:00
4287bd19c7
gnu: bind: Update to 9.12.3-P1.
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* gnu/packages/dns.scm (bind): Update to 9.12.3-P1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:57 +01:00
25a0ffbf27
gnu: emacs-md4rd: Update to c55512c.
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* gnu/packages/emacs.scm (emacs-md4rd): Update to c55512c.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:56 +01:00
cba08f60a1
gnu: Add r-mcmc.
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* gnu/packages/cran.scm (r-mcmc): New variable.
2019-01-09 17:13:52 +01:00
39274ab4d9
gnu: Add r-parcor.
...
* gnu/packages/cran.scm (r-parcor): New variable.
2019-01-09 17:13:52 +01:00
0af9616d91
gnu: Add r-huge.
...
* gnu/packages/cran.scm (r-huge): New variable.
2019-01-09 17:13:52 +01:00
879a15203b
gnu: Add r-ppls.
...
* gnu/packages/cran.scm (r-ppls): New variable.
2019-01-09 17:13:52 +01:00
17932a0f63
gnu: Add r-epi.
...
* gnu/packages/cran.scm (r-epi): New variable.
2019-01-09 17:13:52 +01:00
728012dae8
gnu: Add r-etm.
...
* gnu/packages/cran.scm (r-etm): New variable.
2019-01-09 17:13:52 +01:00
7aeec0cf37
gnu: Add r-cmprsk.
...
* gnu/packages/cran.scm (r-cmprsk): New variable.
2019-01-09 17:13:52 +01:00
e3c0e3e360
gnu: Add r-protviz.
...
* gnu/packages/cran.scm (r-protviz): New variable.
2019-01-09 17:13:52 +01:00
fe4e9f0349
gnu: Add r-rbamtools.
...
* gnu/packages/cran.scm (r-rbamtools): New variable.
2019-01-09 17:13:52 +01:00
e50722c8e6
gnu: Add r-genenet.
...
* gnu/packages/cran.scm (r-genenet): New variable.
2019-01-09 17:13:52 +01:00
6a5bfe09eb
gnu: Add r-longitudinal.
...
* gnu/packages/cran.scm (r-longitudinal): New variable.
2019-01-09 17:13:52 +01:00
1ea708af8c
gnu: Add r-survivalroc.
...
* gnu/packages/cran.scm (r-survivalroc): New variable.
2019-01-09 17:13:52 +01:00
afc0d8158b
gnu: Add r-bootstrap.
...
* gnu/packages/cran.scm (r-bootstrap): New variable.
2019-01-09 17:13:52 +01:00
4fcbd7eaf3
gnu: Add r-rmeta.
...
* gnu/packages/cran.scm (r-rmeta): New variable.
2019-01-09 17:13:52 +01:00
c2d6e866ac
gnu: Add r-drc.
...
* gnu/packages/cran.scm (r-drc): New variable.
2019-01-09 17:13:52 +01:00
99c164a5c7
gnu: Add r-spatialextremes.
...
* gnu/packages/cran.scm (r-spatialextremes): New variable.
2019-01-09 17:13:52 +01:00
32725458b7
gnu: Add r-fields.
...
* gnu/packages/cran.scm (r-fields): New variable.
2019-01-09 17:13:52 +01:00
90104ecd66
gnu: Add r-spam.
...
* gnu/packages/cran.scm (r-spam): New variable.
2019-01-09 17:13:51 +01:00
f51dcc275e
gnu: Add r-dotcall64.
...
* gnu/packages/cran.scm (r-dotcall64): New variable.
2019-01-09 17:13:49 +01:00
658b2b62cb
gnu: Add r-assertive.
...
* gnu/packages/cran.scm (r-assertive): New variable.
2019-01-09 15:43:51 +01:00
39231abf4d
gnu: Add r-assertive-data.
...
* gnu/packages/cran.scm (r-assertive-data): New variable.
2019-01-09 15:43:51 +01:00
39ef8e097b
gnu: Add r-assertive-data-uk.
...
* gnu/packages/cran.scm (r-assertive-data-uk): New variable.
2019-01-09 15:43:51 +01:00
6d3702e5ce
gnu: Add r-assertive-data-us.
...
* gnu/packages/cran.scm (r-assertive-data-us): New variable.
2019-01-09 15:43:51 +01:00
66d0a0a706
gnu: Add r-assertive-strings.
...
* gnu/packages/cran.scm (r-assertive-strings): New variable.
2019-01-09 15:43:51 +01:00
29d9a2affb
gnu: Add r-assertive-datetimes.
...
* gnu/packages/cran.scm (r-assertive-datetimes): New variable.
2019-01-09 15:43:51 +01:00
50ce8b1e2c
gnu: Add r-assertive-code.
...
* gnu/packages/cran.scm (r-assertive-code): New variable.
2019-01-09 15:43:51 +01:00
1f0a761a14
gnu: Add r-assertive-files.
...
* gnu/packages/cran.scm (r-assertive-files): New variable.
2019-01-09 15:43:51 +01:00
5e3bd35506
gnu: Add r-assertive-types.
...
* gnu/packages/cran.scm (r-assertive-types): New variable.
2019-01-09 15:43:51 +01:00
dcafcfb4fd
gnu: Add r-assertive-reflection.
...
* gnu/packages/cran.scm (r-assertive-reflection): New variable.
2019-01-09 15:43:51 +01:00
c358b5d418
gnu: Add r-assertive-models.
...
* gnu/packages/cran.scm (r-assertive-models): New variable.
2019-01-09 15:43:51 +01:00
905aa46ae5
gnu: Add r-assertive-matrices.
...
* gnu/packages/cran.scm (r-assertive-matrices): New variable.
2019-01-09 15:43:50 +01:00
2da2d2f605
gnu: Add r-assertive-sets.
...
* gnu/packages/cran.scm (r-assertive-sets): New variable.
2019-01-09 15:43:50 +01:00
dac9c1f604
gnu: Add r-assertive-numbers.
...
* gnu/packages/cran.scm (r-assertive-numbers): New variable.
2019-01-09 15:43:50 +01:00
4b2d17edaa
gnu: Add r-assertive-properties.
...
* gnu/packages/cran.scm (r-assertive-properties): New variable.
2019-01-09 15:43:50 +01:00
8004bb2451
gnu: Add r-assertive-base.
...
* gnu/packages/cran.scm (r-assertive-base): New variable.
2019-01-09 15:43:50 +01:00
a536c7c9ad
gnu: Add r-rmpfr.
...
* gnu/packages/cran.scm (r-rmpfr): New variable.
2019-01-09 15:43:50 +01:00
1ab5160434
gnu: Add r-gmp.
...
* gnu/packages/cran.scm (r-gmp): New variable.
2019-01-09 15:43:50 +01:00
dfd09f7bad
gnu: Add r-bigrquery.
...
* gnu/packages/cran.scm (r-bigrquery): New variable.
2019-01-09 15:43:50 +01:00
ad6fea1690
gnu: Add r-ontologyindex.
...
* gnu/packages/cran.scm (r-ontologyindex): New variable.
2019-01-09 15:43:50 +01:00
9170eb7f1f
gnu: Add r-rapidjsonr.
...
* gnu/packages/cran.scm (r-rapidjsonr): New variable.
2019-01-09 15:43:50 +01:00
e7176ac5bd
gnu: Add r-pixmap.
...
* gnu/packages/cran.scm (r-pixmap): New variable.
2019-01-09 15:43:50 +01:00
895efece37
gnu: Add r-strucchange.
...
* gnu/packages/cran.scm (r-strucchange): New variable.
2019-01-09 15:43:50 +01:00
d28be7b76b
gnu: Add r-als.
...
* gnu/packages/cran.scm (r-als): New variable.
2019-01-09 15:43:50 +01:00
9401f56b81
gnu: Add r-chemometricswithr.
...
* gnu/packages/cran.scm (r-chemometricswithr): New variable.
2019-01-09 15:43:50 +01:00
25861356ed
gnu: Add r-iso.
...
* gnu/packages/cran.scm (r-iso): New variable.
2019-01-09 15:43:50 +01:00
00436e2cac
gnu: Add r-nnls.
...
* gnu/packages/cran.scm (r-nnls): New variable.
2019-01-09 15:43:50 +01:00
2871b670a8
gnu: Add r-kohonen.
...
* gnu/packages/cran.scm (r-kohonen): New variable.
2019-01-09 15:43:50 +01:00
d0eb09a134
gnu: Add r-grimport.
...
* gnu/packages/cran.scm (r-grimport): New variable.
2019-01-09 15:43:49 +01:00
7eec973e81
gnu: Add r-tractor-base.
...
* gnu/packages/cran.scm (r-tractor-base): New variable.
2019-01-09 15:43:49 +01:00
b98662c53a
gnu: Add r-reportr.
...
* gnu/packages/cran.scm (r-reportr): New variable.
2019-01-09 15:43:49 +01:00
cb03d6c6f3
gnu: Add r-ore.
...
* gnu/packages/cran.scm (r-ore): New variable.
2019-01-09 15:43:49 +01:00
6e09f50613
gnu: Add r-shades.
...
* gnu/packages/cran.scm (r-shades): New variable.
2019-01-09 15:43:49 +01:00
f79e63a571
gnu: Add r-rnifti.
...
* gnu/packages/cran.scm (r-rnifti): New variable.
2019-01-09 15:43:49 +01:00
b2e777b27c
gnu: Add r-tfmpvalue.
...
* gnu/packages/cran.scm (r-tfmpvalue): New variable.
2019-01-09 15:43:49 +01:00
adcd0cc87e
gnu: Add r-splitstackshape.
...
* gnu/packages/cran.scm (r-splitstackshape): New variable.
2019-01-09 15:43:49 +01:00
5f0fbfc0ad
gnu: Add r-lassopv.
...
* gnu/packages/cran.scm (r-lassopv): New variable.
2019-01-09 15:43:49 +01:00
3d62d98e69
gnu: Add r-flare.
...
* gnu/packages/cran.scm (r-flare): New variable.
2019-01-09 15:43:49 +01:00
029425cbce
gnu: Add r-vbsr.
...
* gnu/packages/cran.scm (r-vbsr): New variable.
2019-01-09 15:43:49 +01:00
5574cb812a
gnu: Add r-rpostgresql.
...
* gnu/packages/cran.scm (r-rpostgresql): New variable.
2019-01-09 15:43:49 +01:00
3088b3fc5b
gnu: Add r-rspectra.
...
* gnu/packages/cran.scm (r-rspectra): New variable.
2019-01-09 15:43:45 +01:00
0991fd5336
build: Require Guile 2.2.
...
* configure.ac: Require Guile 2.2.
* README: Adjust accordingly.
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Deprecate.
(guix-minimal): Inherit from GUIX, not from GUILE2.0-GUIX.
2019-01-09 14:47:53 +01:00
fefcb122ac
gnu: dvdisaster: Run regression tests.
...
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Remove #:tests? argument.
Add 'check' phase.
2019-01-08 09:09:31 -06:00
98b0ec7fa6
gnu: dvdisaster: Install desktop file.
...
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add 'install-desktop phase.
2019-01-08 09:09:25 -06:00
627e6d8c11
gnu: prosody: Update to 0.11.1.
...
* gnu/packages/messaging.scm (prosody): Update to 0.11.1.
[arguments]: Replace "Makefile" with "GNUmakefile". Change "5.1" to "5.2".
Explain why there are no tests.
[inputs]: Replace lua-5.1, lua5.1-bitop, lua5.1-expat, lua5.1-socket,
lua5.1-filesystem, lua5.1-sec with lua-5.2, lua5.2-bitop, lua5.2-expat,
lua5.2-socket, lua5.2-filesystem, lua5.2-sec.
2019-01-08 15:23:36 +01:00
eb5b6c5777
gnu: Add lua5.2-sec.
...
* gnu/packages/lua.scm (lua5.2-sec): New variable.
(make-lua-sec): New procedure.
(lua5.1-sec, lua5.2-sec): Call it.
2019-01-08 15:23:36 +01:00
d994325747
gnu: Add lua-filesystem and lua5.2-filesystem.
...
* gnu/packages/lua.scm (lua-filesystem, lua5.2-filesystem): New variables.
(make-lua-filesystem): New procedure.
(lua-filesystem, lua5.1-filesystem, lua5.2-filesystem): Call it.
2019-01-08 15:23:36 +01:00
253aab77c5
gnu: Add lua5.2-socket.
...
* gnu/packages/lua.scm (lua5.2-socket): New variable.
(make-lua-socket): New procedure.
(lua5.1-socket, lua5.2-socket): Call it.
2019-01-08 15:23:36 +01:00
7c97a0631e
gnu: Add lua5.2-expat.
...
* gnu/packages/lua.scm (lua5.2-expat): New variable.
(make-lua-expat): New procedure.
(lua5.1-expat, lua5.2-expat): Call it.
2019-01-08 15:23:36 +01:00
580f33e119
gnu: criu: Update to 3.11.
...
* gnu/packages/virtualization.scm (criu): Update to 3.11.
[arguments]: Add custom phase to patch python calls.
2019-01-08 12:29:42 +02:00
49fe965d28
gnu: criu: Fix building on armhf-linux.
...
* gnu/packages/virtualization.scm (criu)[arguments]: Hardcode the arm
version in the Makefile.
2019-01-08 12:29:40 +02:00
b509381089
gnu: gajim-omemo: Update to 2.6.26.
...
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.26.
2019-01-08 10:19:55 +01:00
5cfec72f39
gnu: gajim: Update to 1.1.1.
...
* gnu/packages/messaging.scm (gajim): Update to 1.1.1.
[arguments]: Replace #:test-target with a 'check' phase.
2019-01-08 10:19:55 +01:00
eac5d425cd
gnu: tor: Update to 0.3.4.10.
...
* gnu/packages/tor.scm (tor): Update to 0.3.4.10.
2019-01-08 04:21:53 +01:00
be4f8391a4
gnu: privoxy: Update to 3.0.28.
...
* gnu/packages/tor.scm (privoxy): Update to 3.0.28.
2019-01-08 04:21:52 +01:00
3c85058c0e
gnu: libnet: Update to 1.2-rc3.
...
* gnu/packages/networking.scm (libnet): Update to 1.2-rc3.
[source]: Use git-fetch.
2019-01-07 22:07:01 +01:00
8737666a99
gnu: ocaml-graph: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name.
2019-01-07 22:05:47 +01:00
33af92dd99
gnu: Move coq packages from ocaml to coq.
...
* gnu/packages/ocaml.scm (coq, proof-general, coq-flocq, coq-gappa, coq-mathcomp)
(coq-coquelicot, coq-bignums, coq-interval): Move from here...
* gnu/packages/coq.scm: ... to here. New file.
2019-01-07 22:05:37 +01:00
912f0541a3
gnu: emacs-guix: Update to 0.5.1.1.
...
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.1.
2019-01-07 22:52:46 +03:00
40c7476af8
gnu: containerd: Update synopsis.
...
* gnu/packages/docker.scm (containerd)[synopsis]: Modify.
2019-01-07 19:13:04 +01:00
54891e850a
gnu: containerd: Enable tests.
...
* gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?.
2019-01-07 19:12:14 +01:00
1f1e338ad4
gnu: Add missing use-module clause.
...
This is a follow-up to 4e5b8f7215
2019-01-07 18:45:23 +01:00
d53b23176f
gnu: Add r-corpcor.
...
* gnu/packages/cran.scm (r-corpcor): New variable.
2019-01-07 18:44:04 +01:00
e3bb076678
gnu: Add r-ddrtree.
...
* gnu/packages/cran.scm (r-ddrtree): New variable.
2019-01-07 18:44:04 +01:00
9f33d76c33
gnu: Add r-qlcmatrix.
...
* gnu/packages/cran.scm (r-qlcmatrix): New variable.
2019-01-07 18:44:04 +01:00
58bc8857fb
gnu: Add r-combinat.
...
* gnu/packages/cran.scm (r-combinat): New variable.
2019-01-07 18:44:04 +01:00
13f5837b4c
gnu: Add r-densityclust.
...
* gnu/packages/cran.scm (r-densityclust): New variable.
2019-01-07 18:44:04 +01:00
b614009e6a
gnu: Add r-sparsesvd.
...
* gnu/packages/cran.scm (r-sparsesvd): New variable.
2019-01-07 18:44:04 +01:00
fbebccf7f6
gnu: Add r-docopt.
...
* gnu/packages/cran.scm (r-docopt): New variable.
2019-01-07 18:44:04 +01:00
45b469a472
gnu: Add r-rvcheck.
...
* gnu/packages/cran.scm (r-rvcheck): New variable.
2019-01-07 18:44:04 +01:00
61d7334906
gnu: Add r-tidytree.
...
* gnu/packages/cran.scm (r-tidytree): New variable.
2019-01-07 18:44:04 +01:00
a6e4413d64
gnu: Add r-colorramps.
...
* gnu/packages/cran.scm (r-colorramps): New variable.
2019-01-07 18:44:04 +01:00
e37935e457
gnu: Add r-wordcloud.
...
* gnu/packages/cran.scm (r-wordcloud): New variable.
2019-01-07 18:44:04 +01:00
f3949fecb3
gnu: Add r-waveslim.
...
* gnu/packages/cran.scm (r-waveslim): New variable.
2019-01-07 18:44:04 +01:00
db084d79ea
gnu: Add r-tiff.
...
* gnu/packages/cran.scm (r-tiff): New variable.
2019-01-07 18:44:04 +01:00
44b0c5b5b1
gnu: Add r-fftwtools.
...
* gnu/packages/cran.scm (r-fftwtools): New variable.
2019-01-07 18:44:03 +01:00
71601a5d92
gnu: Add r-softimpute.
...
* gnu/packages/cran.scm (r-softimpute): New variable.
2019-01-07 18:44:03 +01:00
03a3ec5e18
gnu: Add r-adgoftest.
...
* gnu/packages/cran.scm (r-adgoftest): New variable.
2019-01-07 18:44:03 +01:00
a50abb3614
gnu: Add r-gsl.
...
* gnu/packages/cran.scm (r-gsl): New variable.
2019-01-07 18:44:03 +01:00
ced51a204e
gnu: Add r-stabledist.
...
* gnu/packages/cran.scm (r-stabledist): New variable.
2019-01-07 18:44:03 +01:00
dcd1aa2e64
gnu: perl-lingua-translit: Update to 0.28.
...
* gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28.
2019-01-07 19:42:41 +02:00
4e5b8f7215
gnu: Add containerd.
...
* gnu/packages/docker.scm (containerd): New variable.
2019-01-07 16:41:17 +01:00
7f2d67c826
gnu: Add dummy linker for arm-elf.
...
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf.
2019-01-07 16:39:35 +01:00
2a2760a08f
gnu: Move R packages from geo.scm to cran.scm.
...
* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere,
r-ggmap): Move from here...
* gnu/packages/cran.scm: ...to here.
2019-01-07 15:55:06 +01:00
576e74eee8
gnu: emacs-ess: Move to (gnu packages statistics).
...
* gnu/packages/emacs.scm (emacs-ess): Move from here...
* gnu/packages/statistics.scm (emacs-ess): ...to here.
2019-01-07 15:55:06 +01:00
61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics).
...
* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
2019-01-07 15:55:06 +01:00
e0d3f4bf1a
gnu: Remove reference to (gnu packages statistics).
...
* gnu/packages/web.scm: Remove obsolete use-module clause.
2019-01-07 15:55:06 +01:00
d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm
...
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
2019-01-07 15:55:06 +01:00
41a010875b
gnu: biber: Update to 2.12.
...
* gnu/packages/tex.scm (biber): Update to 2.12.
[source]: Use 'git-fetch'. Add patch.
[inputs]: Add perl-file-slurper. Remove perl-file-slurp.
* gnu/packages/patches/biber-fix-encoding-write.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-01-07 15:40:58 +01:00
60a166c629
gnu: r-feather: Move from serialization.scm to cran.scm.
...
* gnu/packages/serialization.scm (r-feather): Move from here...
* gnu/packages/cran.scm (r-feather): ...to here.
2019-01-07 15:21:09 +01:00
67eebb19b7
gnu: Fix top-level circular references between emacs.scm and llvm.scm.
...
Previously, loading either of these two modules could fail somewhat
non-deterministically because each top-level was referencing a variable
defined by the other module's top-level.
* gnu/packages/emacs.scm (package-elisp-from-package): Move to...
* gnu/packages/llvm.scm (package-elisp-from-package): Here. Keep
private.
2019-01-07 15:09:30 +01:00
37e461e6f4
gnu: perl-file-slurper: Update to 0.012.
...
* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012.
[native-inputs]: Add perl-test-warnings.
2019-01-07 15:08:08 +01:00
92ce188331
gnu: Move R packages from web.scm to cran.scm.
...
* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools,
r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny,
r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these
from here...
* gnu/packages/cran.scm: ...to here.
2019-01-07 15:05:27 +01:00
3a3d4d9d54
Revert "gnu: Use package-elisp-from-package for clangs emacs lisp files"
...
This reverts commit 5bc2e14add
2019-01-07 14:58:40 +01:00
6fd2ed23ac
gnu: mantis: Limit to x86_64-linux.
...
* gnu/packages/bioinformatics.scm (mantis)[supported-systems]: New field.
2019-01-07 15:47:34 +02:00
Ricardo Wurmus