Commit Graph

33219 Commits

Author SHA1 Message Date
Mathieu Othacehe 29d8d9196b
installer: Add new pages.
* gnu/installer/newt/page.scm (run-scale-page): New exported procedure,
(run-checkbox-tree-page): ditto,
(run-file-textbox-page): ditto.
2019-01-17 14:04:23 +01:00
Mathieu Othacehe b4658c258e
installer: Add hostname.
* gnu/installer/hostname.scm: New file.
* gnu/installer.scm (installer-program): Use new module above.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
* po/guix/POTFILES.in: Add new file.
2019-01-17 14:04:23 +01:00
Mathieu Othacehe b51bde71a9
installer: Add services page.
Add a page to select services, for now only desktop environments choice is
available.

* gnu/installer.scm (steps): Add services step.
* gnu/installer/newt.scm (newt-installer): Add services-page field.
* gnu/installer/newt/services.scm: New file.
* gnu/installer/record.scm (installer): Add services-page field.
* gnu/installer/services.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new files.
* po/guix/POTFILES.in: Add new files.
2019-01-17 14:04:23 +01:00
Mathieu Othacehe c088b2e47f
installer: Do not ask for keyboard model.
Suppose that the keyboard model is "pc105".

* gnu/installer.scm (apply-keymap): Remove model ...
* gnu/installer/newt/keymap.scm (run-keymap-page): passed here.
(run-model-page): remove procedure
* gnu/installer/record.scm (installer): Edit keymap-page prototype in comment.
* gnu/installer/keymap.scm (default-keyboard-model): New exported parameter.
2019-01-17 14:04:23 +01:00
Mathieu Othacehe dc5f3275ec
installer: Add configuration formatter.
* gnu/installer.scm (installer-steps): Add configuration-formatter procedures.
* gnu/installer/final.scm: New file.
* gnu/installer/locale.scm (locale->configuration): New exported procedure.
* gnu/installer/newt.scm (newt-installer): Add final page.
* gnu/installer/newt/final.scm: New file.
* gnu/installer/record.scm (installer): Add final-page field.
* gnu/installer/timezone.scm (posix-tz->configuration): New exported
procedure.
* gnu/installer/steps.scm (installer-step): Rename configuration-proc field to
configuration-formatter.
(%installer-configuration-file): New exported parameter,
(%installer-target-dir): ditto,
(%configuration-file-width): ditto,
(format-configuration): new exported procedure,
(configuration->file): new exported procedure.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe 3ad8f7757c
installer: Add new utils.
* gnu/installer/utils.scm (nearest-exact-integer): New exported procedure,
(read-percentage): ditto,
(run-shell-command): ditto.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe 5cdb6bd2db
installer: Remove "selection" from all titles.
* gnu/installer/newt/hostname.scm (run-hostname-page): Remove selection from
page title,
(run-variant-page): ditto.
* gnu/installer/newt/keymap.scm (run-layout-page): Ditto.
* gnu/installer/newt/locale.scm (run-layout-page): Ditto,
(run-territory-page): ditto,
(run-codeset-page): ditto,
(run-modifier-page): ditto
* gnu/installer/newt/network.scm (run-territory-page): Ditto.
* gnu/installer/newt/timezone.scm (run-timezone-page): Ditto.
* gnu/installer/newt/wifi.scm (run-wifi-page): Ditto.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe 983abd2cf9
file-systems: Export read-partition-label and read-partition-uuid.
* gnu/build/file-systems.scm (read-partition-label): Export it,
(read-partition-uuid): ditto.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe a8307a178b
gnu: Add guile-parted.
* gnu/packages/guile.scm (guile-parted): New variable.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe 7e3e6d721d
gnu: guile-newt: Update to revision 4.
* gnu/packages/guile.scm (guile-newt): Update to revision 4.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe ca0c43ecf0
services: herd: Allow to pass arguments to start-service.
* gnu/services/herd.scm (start-service)[arguments]: New optional argument.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe 4f83afd28a
tests: Rename %test-encrypted-os to %test-encrypted-root-os.
* gnu/tests/install.scm (%test-encrypted-os): Rename to
%test-encrypted-root-os for consistency with its system-test name.
2019-01-17 14:04:21 +01:00
Mathieu Othacehe 6b48825e4b
installer: Fix locale installation.
For some mysterious reason, calling 'setlocale' as first instruction of
installer-builder does not install unicode support correctly. So set LANG env
variable and start the installer until this is understood.

* gnu/installer.scm (installer-program): Wrap installer-builder to have the
opportunity to set LANG environment variable before starting the installer.
2019-01-17 14:04:21 +01:00
Mathieu Othacehe a49d633c0c
installer: Move everything to the build side.
* gnu/installer.scm: Rename to ...
* gnu/installer/record.scm: ... this.
* gnu/installer/build-installer.scm: Move everything to the build side and
rename to gnu/installer.scm.
* gnu/installer/newt.scm: Remove all the gexps and add depencies to newt
modules as this code will only be used on the build side by now.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adapt it,
(dist_installer_DATA): New rule to install installer's aux-files.
* gnu/system/install.scm (%installation-services): Use only
'installer-program' from (gnu installer). The installer is now choosen on the
build side.
* guix/self.scm (*system-modules*): Restore previous behaviour and add all
installer files to #:extra-files field of the scheme-node.
* po/guix/POTFILES.in: Adapt it.
2019-01-17 14:04:21 +01:00
Mathieu Othacehe 113bdf6ae1
installer: Rewrite welcome page.
The welcome page is the only page using absolute positioning for the newt
components, so that the page occupies all the screen space. This is becoming
too hard to manage, so switch to grid management like elsewhere, even if the
result is less appealing.

Also add an info text to the page with a mention on how to switch back to the
original installer.

* gnu/installer/newt/welcome.scm (run-menu-page): Use a vertically stacked
grid instead of hard window placement.
2019-01-17 14:04:21 +01:00
Mathieu Othacehe a79617468e
gnu: installer: Launch the installer as kmscon login-program.
Source /etc/environment just before starting the installer. The login program
is supposed to load the environment variables of this file through PAM, but as
we replace it by the installer, they are no longer available. This is mostly
useful for the LANG environment variable.

* gnu/installer/build-installer.scm (installer-program-launcher): New exported
procedure.
* gnu/system/install.scm (%installation-services): Restore most of the origin
code. kmscon is only started on TTY1, and the graphical installer is the
login-program.
2019-01-17 14:04:21 +01:00
Mathieu Othacehe 7d328e341a
configure: Disable installer build by default.
Only build installer if "--enable-installer" is passed. In that case only, the
support for Guile-newt becomes mandatory.

* configure.ac: Add --enable-installer argument. Export ENABLE_INSTALLER
conditional according to the argument value.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove installer modules and build them
only if ENABLE_INSTALLER is set.
2019-01-17 14:04:21 +01:00
Mathieu Othacehe 9b9a5e3283
installer: newt: Locate the logo within local-file.
* gnu/installer/newt.scm (logo): Remove it,
(welcome-page): Use a relative path to locate the logo.
2019-01-17 14:04:20 +01:00
Mathieu Othacehe ba32109a28
installer: newt: Use scheme-modules* instead of scheme-modules.
* gnu/installer/newt.scm (modules): Use scheme-modules*.
2019-01-17 14:04:20 +01:00
Mathieu Othacehe d0f3a672dc
gnu: Add graphical installer support.
* configure.ac: Require that guile-newt is available.
* gnu/installer.scm: New file.
* gnu/installer/aux-files/logo.txt: New file.
* gnu/installer/build-installer.scm: New file.
* gnu/installer/connman.scm: New file.
* gnu/installer/keymap.scm: New file.
* gnu/installer/locale.scm: New file.
* gnu/installer/newt.scm: New file.
* gnu/installer/newt/ethernet.scm: New file.
* gnu/installer/newt/hostname.scm: New file.
* gnu/installer/newt/keymap.scm: New file.
* gnu/installer/newt/locale.scm: New file.
* gnu/installer/newt/menu.scm: New file.
* gnu/installer/newt/network.scm: New file.
* gnu/installer/newt/page.scm: New file.
* gnu/installer/newt/timezone.scm: New file.
* gnu/installer/newt/user.scm: New file.
* gnu/installer/newt/utils.scm: New file.
* gnu/installer/newt/welcome.scm: New file.
* gnu/installer/newt/wifi.scm: New file.
* gnu/installer/steps.scm: New file.
* gnu/installer/timezone.scm: New file.
* gnu/installer/utils.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add previous files.
* gnu/system.scm: Export %root-account.
* gnu/system/install.scm (%installation-services): Use kmscon instead of linux
VT for all tty.
(installation-os)[users]: Add the graphical installer as shell of the root
account.
[packages]: Add font related packages.
* po/guix/POTFILES.in: Add installer files.
2019-01-17 14:04:20 +01:00
Mathieu Othacehe 08af580bde
gnu: kmscon: Add runtime keymap update support.
* gnu/packages/patches/kmscon-runtime-keymap-switch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/terminals.scm (kmscon)[source]: Add patch.
2019-01-17 14:04:20 +01:00
Mathieu Othacehe 76421cf0d2
services: kmscon: Remove virtual-terminal requirement.
kmscon does not require that virtual terminals run in UTF-8 mode.

* gnu/services/base.scm (kmscon-service-type): Remove virtual-terminal from
requirement list.
2019-01-17 14:04:20 +01:00
Mathieu Othacehe 15f0719e67
guile: newt: Update revision to 3.
* gnu/packages/guile.scm (guile-newt): Update revision to 3.
2019-01-17 14:04:20 +01:00
Gabriel Hondet 57cd7d92d8
gnu: Add ghc-tldr.
* gnu/packages/haskell.scm (ghc-tldr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-17 14:04:20 +01:00
Marius Bakke 073f5f2057
Revert "Revert "gnu: man-db: Embed absolute reference to 'preconv'.""
This reverts commit ccb15b343e.

Now that we've fixed the segfault with groff's preconv (see
73b2ce8795), it's safe to re-apply this fix.
2019-01-17 12:29:40 +01:00
Pierre Neidhardt 3d540c48e7
gnu: Add emacs-edbi-sqlite.
* gnu/packages/emacs-xyz.scm (emacs-edbi-sqlite): New variable.
2019-01-17 12:20:55 +01:00
Pierre Neidhardt c010ec65ae
gnu: Add emacs-edbi.
* gnu/packages/emacs-xyz.scm (emacs-edbi): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 8c98ce92b9
gnu: Add emacs-epc.
* gnu/packages/emacs-xyz.scm (emacs-epc): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 3e1fcc5ef4
gnu: Add emacs-ctable.
* gnu/packages/emacs-xyz.scm (emacs-ctable): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 5544a07fb5
gnu: Add emacs-e2wm.
* gnu/packages/emacs-xyz.scm (emacs-e2wm): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 9830f1a249
gnu: Add emacs-window-layout.
* gnu/packages/emacs-xyz.scm (emacs-window-layout): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 2c114220aa
gnu: Add perl-rpc-epc-service.
* gnu/packages/libevent.scm (perl-rpc-epc-service): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt cbffb56cd4
gnu: Add perl-data-sexpression.
* gnu/packages/perl.scm (perl-data-sexpression): New variable.
2019-01-17 12:20:54 +01:00
Danny Milosavljevic 73b2ce8795
gnu: groff-minimal: Disable relocatability.
* gnu/packages/groff.scm (groff-minimal)[arguments]<#:phases>
[disable-relocatability]: New phase.
2019-01-17 10:07:07 +01:00
Gabriel Hondet 6c4a951a6e
gnu: gauche: Remove number of packages from description.
* gnu/packages/scheme.scm (gauche)[description]: Remove number of packages.
[arguments]: Remove useless code.
2019-01-17 08:24:30 +01:00
Hartmut Goebel 2615ee9520
gnu: kwindowsystem: Enable test-suite.
* gnu/package/kde-frameworks.scm(kwindowsystem)
  [inputs]: Add openbox.
  [arguments] <#:tests?> Remove.
  <#:phases> 'blacklist-failing-tests: New phase.
  <#:phases> 'check: Start openbox, don't set QT_PLUGIN_PATH, use invkove,
  simplify and cleanup code. No longer move 'check behind install.
2019-01-17 00:19:33 +01:00
Hartmut Goebel e11553f742
gnu: knewstuff: Enable test-suite.
Without anything changed the test-suite now passes, thus can be enabled.

* gnu/package/kde-frameworks.scm(knewstuff)[arguments]<#:tests?>: Remove.
2019-01-17 00:19:33 +01:00
Hartmut Goebel 048c557d66
gnu: kemoticons: Enable test-suite.
Without anything changed the test-suite now passes, thus can be enabled.

* gnu/package/kde-frameworks.scm(kemoticons)[arguments]<#:tests?>: Remove.
2019-01-17 00:19:33 +01:00
Hartmut Goebel 8c81e9f2db
gnu: kpackage: Enable test-suite.
* gnu/package/kde-frameworks.scm(kpackage)[arguments]
  <#:tests?>: Remove. <#:phases>: Add phase 'patch-tests.
2019-01-17 00:19:33 +01:00
Hartmut Goebel 6ca3218812
gnu: kirigami: Enable test-suite.
The error which inhibited running the tests no longer occurs
in 5.49.0, although now no tests are found at all.  Since no tests
are found now, the phase 'check-setup can be removed, too,
and thus the 'arguments' at all.

* gnu/packages/kde-frameworks.scm(kirigami)[arguments]: Remove.
2019-01-17 00:19:32 +01:00
Hartmut Goebel 2d4589ffb9
gnu: kcoreaddons: Enable test-suite.
Enable running the tests and blacklist the one failing test.

* gnu/package/kde-frameworks.scm(kcoreaddons)[arguments]
  <#:tests?>: Remove. <#:phases>: Add phase 'blacklist-failing-test.
2019-01-17 00:19:32 +01:00
Julien Lepiller 22fe911061
gnu: php: Update to 7.3.1.
* gnu/packages/php.scm (php): Update to 7.3.1.
2019-01-16 20:35:41 +01:00
Gabriel Hondet 4d390cad25
gnu: Add ocaml-ppxlib.
* gnu/packages/ocaml.scm (ocaml-ppxlib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:44 +01:00
Gabriel Hondet 3f623d00a7
gnu: Add ocaml-ppx-derivers.
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:37 +01:00
Gabriel Hondet b5bab81c10
gnu: Add ocaml-migrate-parsetree.
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:35 +01:00
Gabriel Hondet ac06a773f5
gnu: Add ocaml-compiler-libs.
* gnu/packages/ocaml.scm (ocaml-compiler-libs): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:33 +01:00
Gabriel Hondet 22074259d2
gnu: Add ocaml-base.
* gnu/packages/ocaml.scm (ocaml-base): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:30 +01:00
Gabriel Hondet 7cca1fd400
gnu: Add ocaml-sexplib.
* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:28 +01:00
Gabriel Hondet 7726124ae2
gnu: Add ocaml-parsexp.
* gnu/packages/ocaml.scm (ocaml-parsexp): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:26 +01:00
Gabriel Hondet 5fa01e8aaa
gnu: Add ocaml-sexplib0.
* gnu/packages/ocaml.scm (ocaml-sexplib0): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:21 +01:00
Efraim Flashner 5f2122fb21
gnu: gnurl: Add properties for updater.
* gnu/packages/gnunet.scm (gnurl)[properties]: New field.
2019-01-16 19:48:02 +02:00
Efraim Flashner 96733e9417
Revert "gnu: groff: Disable relocatability."
This causes more than 3600 packages to be rebuilt.

This reverts commit f57693e17c.
2019-01-16 18:31:27 +02:00
Ricardo Wurmus 4eacd52cd0
gnu: Remove unnecessary module reference.
* gnu/packages/glib.scm: Remove reference to python-xyz.
2019-01-16 16:08:30 +01:00
Ricardo Wurmus eeb883cb0d
gnu: Move Emacs packages to new module.
* gnu/packages/emacs.scm: Move almost all packages from here...
* gnu/packages/emacs-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/statistics.scm: Update module references.
2019-01-16 16:08:22 +01:00
Ricardo Wurmus 255d1bbe77
gnu: Move dbm databases to new module.
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here...
* gnu/packages/dbm.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/audio.scm,
gnu/packages/avahi.scm,
gnu/packages/backup.scm,
gnu/packages/cobol.scm,
gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm,
gnu/packages/finance.scm,
gnu/packages/game-development.scm,
gnu/packages/gnome.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/linux.scm,
gnu/packages/mail.scm,
gnu/packages/man.scm,
gnu/packages/nvi.scm,
gnu/packages/openldap.scm,
gnu/packages/package-management.scm,
gnu/packages/php.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/sawfish.scm: Update module references.
2019-01-16 16:08:22 +01:00
Ricardo Wurmus cd0322a3ef
gnu: Move sqlite to separate module.
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5,
sqlite-with-column-metadata): Move variables from here...
* gnu/packages/sqlite.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/apl.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/code.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/dc.scm,
gnu/packages/disk.scm,
gnu/packages/ebook.scm,
gnu/packages/education.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/file-systems.scm,
gnu/packages/freedesktop.scm,
gnu/packages/ftp.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gnome.scm,
gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/gps.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/kodi.scm,
gnu/packages/lisp.scm,
gnu/packages/mail.scm,
gnu/packages/messaging.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nfs.scm,
gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/php.scm,
gnu/packages/python.scm,
gnu/packages/qt.scm,
gnu/packages/ruby.scm,
gnu/packages/scheme.scm,
gnu/packages/sync.scm,
gnu/packages/syndication.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/web-browsers.scm,
gnu/packages/webkit.scm: Adjust module references.
2019-01-16 16:08:22 +01:00
Danny Milosavljevic f57693e17c
gnu: groff: Disable relocatability.
* gnu/packages/groff.scm (groff)[arguments]<#:phases>[disable-relocatability]:
New phase.
2019-01-16 15:15:30 +01:00
Clément Lassieur be1ce9fd31
gnu: Add prosody-smacks.
* gnu/packages/messaging.scm (prosody-smacks): New variable.
2019-01-16 14:26:06 +01:00
Pkill -9 a42bdd1c22
gnu: obs: Update to 22.0.3.
* gnu/packages/video.scm (obs): Update to 22.0.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-16 14:07:38 +01:00
nee ab100b905f
gnu: grub: Add dependency on console-setup.
* gnu/packages/bootloaders.scm (grub)[arguments]: In 'patch-stuff'
phase, patch 'grub-kbdcomp.in'.
[inputs]: Add CONSOLE-SETUP.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-01-16 14:07:38 +01:00
Ludovic Courtès 5f7467f046
bootloader: Remove deprecated 'device' field.
The 'device' field had been deprecated in commit
045ebb3e58 (August 2017).

* gnu/bootloader.scm (<bootloader-configuration>)[device]: Remove.
[target]: Change getter to 'bootstrap-configuration-target'.
(bootstrap-configuration-target): Remove.
2019-01-16 14:07:38 +01:00
Ludovic Courtès 5c215c9e47
install: Avoid deprecated 'gpm-service' procedure.
* gnu/system/install.scm (%installation-services): Use the 'service'
form instead of 'gpm-service'.
2019-01-16 14:07:37 +01:00
Ludovic Courtès 2e04ab7147
services: avahi: Deprecate the 'avahi-service' procedure.
* gnu/services/avahi.scm (<avahi-configuration>): Export getters.  Add
default values.
(avahi-service-type)[default-value]: New field.
(avahi-service): Mark as deprecated.
* gnu/services/desktop.scm (%desktop-services): Use the 'service' form
instead of calling 'avahi-service'.
* gnu/tests/base.scm (%avahi-os): Likewise.
* doc/guix.texi (Base Services): Adjust example accordingly.
(Networking Services): Update accordingly.
2019-01-16 14:07:37 +01:00
Efraim Flashner 39ad752cf9
gnu: kodi: Skip failing test.
* gnu/packages/kodi.scm (kodi)[source]: Add patch.
* gnu/packages/patches/kodi-skip-test-449.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-01-16 11:59:35 +02:00
Pierre Neidhardt be0be3dee0
gnu: Add meld.
* gnu/packages/patchutils.scm (meld): New variable.
2019-01-16 10:44:23 +01:00
nee 41a54622b6
gnu: Add console-setup.
* gnu/packages/xorg.scm (console-setup): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-01-15 23:16:20 +01:00
Ludovic Courtès fe77ede70a
gnu: Add bdfresize.
* gnu/packages/xorg.scm (bdfresize): New variable.
2019-01-15 23:16:20 +01:00
Kei Kebreau 8fb8afd98c
gnu: hyperrogue: Update to 10.5d.
* gnu/packages/games.scm (hyperrogue): Update to 10.5d.
2019-01-15 14:48:59 -05:00
Jelle Licht b03131902e
gnu: emacs-closql: Fix hash.
* gnu/packages/emacs.scm (emacs-closql)[source]: Fix incorrect hash.
2019-01-15 20:28:37 +01:00
Ludovic Courtès 0ea939fb79
guix package: '--list-available' can use data from the cache.
* gnu/packages.scm (fold-available-packages): New procedure.
* guix/scripts/package.scm (process-query): Use it instead of
'fold-packages'.
* tests/packages.scm ("fold-available-packages with/without cache"):
New test.
2019-01-15 20:24:09 +01:00
Ludovic Courtès ee8099f5b6
edit: Use 'specification->location' to read information from the cache.
That way 'guix edit' doesn't need to load any package module.

* gnu/packages.scm (find-package-locations, specification->location):
New procedures.
* guix/scripts/edit.scm (package->location-specification): Rename to...
(location->location-specification): ... this.  Expect a location object
instead of a package.
(guix-edit): Use 'specification->location' instead of
'specification->package'.
* tests/packages.scm ("find-package-locations")
("find-package-locations with cache")
("specification->location"): New tests.
2019-01-15 20:24:09 +01:00
Ludovic Courtès 5fbdc9a5aa
channels: Compute a package cache and use it.
* gnu/packages.scm (cache-is-authoritative?, load-package-cache)
(cache-lookup, generate-package-cache): New procedures.
(%package-cache-file): New variable.
(find-packages-by-name): Rename to...
(find-packages-by-name/direct): ... this.
(find-packages-by-name): Rewrite to use the package cache when
'cache-is-authoritative?' returns true.
* tests/packages.scm ("find-packages-by-name + version, with cache")
("find-packages-by-name with cache"): New tests.
* guix/channels.scm (package-cache-file): New procedure.
(%channel-profile-hooks): New variable.
(channel-instances->derivation): Use it in #:hooks.
* guix/scripts/package.scm (build-and-use-profile): Add #:hooks and
honor it.
* guix/scripts/pull.scm (build-and-install): Pass #:hooks to
UPDATE-PROFILE.
2019-01-15 20:24:09 +01:00
Ludovic Courtès e2a903c807
packages: Remove 'find-newest-available-packages'.
Since commit 9ffc1c00e5,
'find-newest-available-packages' and 'find-packages-by-name' were both
building a vhash mapping package names to packages.  This factorizes
this bit, also reducing I/O, CPU, and memory usage.

* gnu/packages.scm (find-best-packages-by-name): Remove.
(find-best-packages-by-name): Use 'find-packages-by-name' instead of
'find-newest-available-packages'.
2019-01-15 20:24:09 +01:00
Gabriel Hondet eac7ed195b
gnu: Add gauche.
* gnu/packages/scheme.scm (gauche): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-15 20:24:08 +01:00
Ricardo Wurmus 4fec042b54
gnu: Move Python compression packages to new module.
* gnu/packages/compression.scm (python-lzo, python2-lzo, python-lz4,
python2-lz4, python-lzstring, python2-lzstring, bitshuffle,
bitshuffle-for-snappy): Move variables from here...
* gnu/packages/python-compression.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/bioinformatics.scm,
gnu/packages/java-compression.scm,
gnu/packages/xorg.scm: Adjust module references.
2019-01-15 17:45:33 +01:00
Ricardo Wurmus 22e623aef0
gnu: Add python-grpcio.
* gnu/packages/python-xyz.scm (python-grpcio): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus 2884aac071
gnu: Add python-gast.
* gnu/packages/python-xyz.scm (python-gast): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus 79869f8064
gnu: Add python-astunparse.
* gnu/packages/python-xyz.scm (python-astunparse): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus 81bed4e92b
gnu: Add python-astor.
* gnu/packages/python-xyz.scm (python-astor): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus d0446c4b55
gnu: Add python-absl-py.
* gnu/packages/python-xyz.scm (python-absl-py): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus c22c803efc
gnu: Add protobuf-next.
* gnu/packages/protobuf.scm (protobuf-next): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus e2931e9979
gnu: Add c-ares-next.
* gnu/packages/adns.scm (c-ares-next): New variable.
2019-01-15 17:27:34 +01:00
Danny Milosavljevic 9210a6c082
gnu: yosys: Update to 0.8.
* gnu/packages/fpga.scm (yosys): Update to 0.8.
2019-01-15 16:46:45 +01:00
Danny Milosavljevic eccd3f6d2e
gnu: arachne-pnr: Fix tests.
* gnu/packages/fpga.scm (arachne-pnr)[arguments]: Add #:make-flags.
<#:phases>[configure]: Remove Makefile substitution.
2019-01-15 16:46:45 +01:00
Danny Milosavljevic 72dd271cee
gnu: icestorm: Update to 0.0-2-c0cbae88a.
* gnu/packages/fpga.scm (icestorm): Update to 0.0-2-c0cbae88a.
2019-01-15 16:46:45 +01:00
Amin Bandali e82baf69f1
gnu: arachne-pnr: Update to 840bdfdeb.
* gnu/packages/fpga.scm (arachne-pnr): Update to 840bdfdeb.
2019-01-15 16:46:43 +01:00
swedebugia 357b9f9d71
gnu: Rename sshfs-fuse to sshfs.
* gnu/packages/linux.scm (sshfs): New variable.
(sshfs-fuse): Mark as superseded.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-15 10:45:45 -05:00
Ricardo Wurmus 5327e912a8
gnu: Add missing module reference.
This is a follow-up to commit 44d10b1f72.

* gnu/packages/tex.scm: Add missing reference to python-xyz.
2019-01-15 14:58:13 +01:00
Ricardo Wurmus 44d10b1f72
gnu: Separate Python core packages from the rest.
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
2019-01-15 14:46:44 +01:00
Danny Milosavljevic f370509096
gnu: docker-cli: Don't install the same executable twice.
Reported by Meiyo Peng <meiyo.peng@gmail.com>.

* gnu/packages/docker.scm (docker-cli)[arguments]<#:phases>[install]:
Don't install the same executable twice.
2019-01-15 13:32:09 +01:00
Ricardo Wurmus c4153008f7
gnu: python-numpy-documentation: Add missing packages to texlive-union.
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Add
texlive-fonts-cm-super and texlive-latex-needspace to texlive-union.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 24d0c4d0eb
gnu: texlive-fonts-amsfonts: Install type1 fonts.
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[native-inputs]: Fetch type1
font files.
[arguments]: Install them.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 1574932deb
gnu: texlive-bin: Do not truncate output lines.
* gnu/packages/tex.scm (texlive-bin)[arguments]: Change default line limits in
build phase.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 769bb5e56b
gnu: Add texlive-luatex-luaotfload.
* gnu/packages/tex.scm (texlive-luatex-luaotfload): New variable.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus c2a1fe4ad2
gnu: Add texlive-fonts-lm.
* gnu/packages/tex.scm (texlive-fonts-lm): New variable.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 4e9242aaeb
gnu: Add texlive-fonts-cm-super.
* gnu/packages/tex.scm (texlive-fonts-cm-super): New variable.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus d7da23721a
gnu: texlive-union: Implement in terms of texlive-base.
* gnu/packages/tex.scm (texlive-union): Inherit from texlive-base.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus bfcb9d4dbf
gnu: Add texlive-base.
* gnu/packages/tex.scm (texlive-base): New variable.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus a1b4d62cda
gnu: texlive-bin: Add native search paths.
* gnu/packages/tex.scm (texlive-bin)[native-search-paths]: Add specifications
for TEXMF and TEXMFCNF.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 476f7fceb7
gnu: texlive-union: Wrap programs weakly.
* gnu/packages/tex.scm (texlive-union)[arguments]: Wrap programs with TEXMFCNF
and TEXMF so that environment variables take precedence.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 9c45beb4cc
gnu: texlive-latex-fontspec: Install default fontspec.cfg.
* gnu/packages/tex.scm (texlive-latex-fontspec)[arguments]: Add build phase to
install fontspec.cfg.
2019-01-15 13:05:22 +01:00
Efraim Flashner ebe0271aa0
gnu: opencv: Update configure flags.
* gnu/packages/image-processing.scm (opencv)[arguments]: Change the
configure-flags on a per-architecture basis.
2019-01-15 13:20:14 +02:00
Danny Milosavljevic 49ec5d88c5
tests: docker: Run a guest guile inside the docker container.
* gnu/tests/docker.scm (run-docker-test): Add parameters.  Load and run
docker container.  Check response of guest guile.
(build-tarball&run-docker-test): New procedure.
(%test-docker): Use it.
[description]: Modify.
2019-01-15 12:16:46 +01:00
Ludovic Courtès 74a8b2cca1
gnu: guile-commonmark: Install .scm files in the right place.
Previously they'd be installed in PREFIX/share/share/guile/site.

* gnu/packages/guile.scm (guile-commonmark)[modules, snippet]: New
fields.
2019-01-15 12:05:21 +01:00
Arun Isaac 6aa4f09eb6
gnu: font-dosis: Switch to font-build-system.
* gnu/packages/fonts.scm (font-dosis): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
[native-inputs]: Remove unzip.
2019-01-15 15:27:54 +05:30
Jonathan Brielmaier 4deeb1ed06
gnu: Add missing patch to local.mk.
This was forgotten in ab533c613e.

* gnu/local.mk (dist_patch_DATA): Add
"allegro-fix-compilation-mesa-18.2.5-and-later.patch".

Signed-off-by: Jonathan Brielmaier <jbrielmaier@suse.de>
2019-01-15 11:50:27 +02:00
Clément Lassieur 67c05f587a
gnu: python-git-review: Update to 1.27.0.
* gnu/packages/openstack.scm (python-git-review): Update to 1.27.0.
[arguments]: Get the 'wrap-program' phase to return #t.
2019-01-15 10:49:18 +01:00
Clément Lassieur 104e1d55c7
gnu: prosody: Update to 0.11.2.
* gnu/packages/messaging.scm (prosody): Update to 0.11.2.
2019-01-15 10:49:18 +01:00
Efraim Flashner 38f18309e1
gnu: youtube-dl: Update to 2019.01.10.
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.10.
[source]: Update uri.
2019-01-15 09:42:17 +02:00
Ludovic Courtès e98c354d1a
gnu: guile-ssh: Use 'git-fetch'.
* gnu/packages/ssh.scm (guile-ssh)[source]: Change to 'git-fetch'.
2019-01-14 23:43:49 +01:00
Ludovic Courtès a8b0556ea1
gnu: libssh: Update to 0.8.6.
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.8.6.
[source](patches): Remove.
[arguments]: Add #:phases.
(guile-ssh)[source](modules, snippet]: New fields.
2019-01-14 23:43:49 +01:00
Ludovic Courtès 152d4076a4
gnu: guile-json: Add 3.1.0.
* gnu/packages/guile.scm (guile-json-3): New variable.
2019-01-14 23:43:49 +01:00
Ricardo Wurmus 21b41a79fe
gnu: Move Perl compression packages to new module.
* gnu/packages/compression.scm (perl-compress-raw-bzip2,
perl-compress-raw-zlib, perl-io-compress, perl-archive-zip,
perl-archive-extract): Move from here...
* gnu/packages/perl-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ci.scm, gnu/packages/libreoffice.scm, gnu/packages/perl.scm:
Adjust references.
2019-01-14 18:12:54 +01:00
Ricardo Wurmus b80ecc5a63
gnu: texlive-latex-fontspec: Propagate l3packages.
* gnu/packages/tex.scm (texlive-latex-fontspec)[inputs]: Remove
texlive-latex-l3kernel.
[propagated-inputs]: Add texlive-latex-l3packages.
2019-01-14 15:42:32 +01:00
Ricardo Wurmus 2fea7041a3
gnu: texlive-latex-l3packages: Propagate l3kernel.
* gnu/packages/tex.scm (texlive-latex-l3packages)[inputs]: Move
texlive-latex-l3kernel from here...
[propagated-inputs]: ...to here.
2019-01-14 15:39:22 +01:00
Ricardo Wurmus 73635e3f69
gnu: Add texlive-latex-changepage.
* gnu/packages/tex.scm (texlive-latex-changepage): New variable.
2019-01-14 14:13:21 +01:00
Ricardo Wurmus 6309d21579
gnu: Add texlive-generic-babel-german.
* gnu/packages/tex.scm (texlive-generic-babel-german): New variable.
2019-01-14 14:13:21 +01:00
Ricardo Wurmus d68c8017f1
gnu: texlive-latex-base: Install configuration files.
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Install all
configuration files.
[native-inputs]: Move texlive-generic-hyph-utf8 from here...
[propagated-inputs]: ...to here.
2019-01-14 14:13:21 +01:00
Efraim Flashner 6c56e9c493
gnu: opencv: Use 'git-fetch'.
* gnu/packages/image-processing.scm (opencv)[source]: Use 'git-fetch'.
[native-inputs]: Use 'git-fetch' for opencv_extras and opencv_contrib.
Remove unzip.
[arguments]: Update custom 'unpack-submodule-sources accordingly. Update
paths in configure-flags, 'diable-broken-tests phase.
2019-01-14 15:07:42 +02:00
Efraim Flashner 7b28210531
gnu: python-django-filter: Use 'invoke'.
* gnu/packages/django.scm (python-django-filter)[arguments]: Use
'invoke'.
2019-01-14 15:07:42 +02:00
Efraim Flashner 8e21fa0bd3
gnu: opencv: Loosen test suite failures.
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch
to opencv-contrib.
[arguments]: Update 'unpack-submodule-sources phase.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-01-14 15:07:42 +02:00
Efraim Flashner fdeb2def6a
gnu: opencv: Update configure flags.
* gnu/packages/image-processing.scm (opencv)[arguments]: Don't use
precompiled headers. Enable all available CPU optimizations.
2019-01-14 15:07:42 +02:00
Efraim Flashner b5baf9529e
gnu: opencv: Don't hardcode build directories.
* gnu/packages/image-processing.scm (opencv)[arguments]: Change
OPENCV_EXTRA_MODULES_PATH and OPENCV_TEST_DATA_PATH to use 'getcwd'
instead of hardcoding the build path.
2019-01-14 15:07:41 +02:00
Efraim Flashner 6949f45c10
gnu: opencv: Fix building on non-x86_64 systems.
* gnu/packages/image-processing.scm (opencv)[arguments]: Add
configure-flag to disable carotene. Don't require x86_64 CPU
except on x86_64. Fix typo.
2019-01-14 15:07:41 +02:00
Efraim Flashner c5c42f0a9c
gnu: gnurl: Update to 7.63.0.
* gnu/packages/gnunet.scm (gnurl): Update to 7.63.0.
2019-01-14 13:57:49 +02:00
Clément Lassieur 6e46be066a
gnu: emacs-pass: Update to 1.8.
* gnu/packages/emacs.scm (emacs-pass): Update to 1.8.
2019-01-14 12:33:46 +01:00
Rutger Helling 478040d4fb
gnu: dosbox: Update to 0.74-2.
* gnu/packages/emulators.scm (dosbox): Update to 0.74-2.
[arguments]: Use invoke in 'autogen.sh phase.
2019-01-14 09:08:04 +01:00
Mark H Weaver 72b308364f
gnu: linux-libre: Update to 4.20.2.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.2.
(%linux-libre-hash): Update hash.
2019-01-14 01:29:47 -05:00
Mark H Weaver 8fa75a2266
gnu: linux-libre@4.19: Update to 4.19.15.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.15.
(%linux-libre-4.19-hash): Update hash.
2019-01-14 01:28:02 -05:00
Mark H Weaver 8b2aabd9d9
gnu: linux-libre@4.14: Update to 4.14.93.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.93.
(%linux-libre-4.14-hash): Update hash.
2019-01-14 01:26:21 -05:00
Mark H Weaver e724e1543a
gnu: linux-libre@4.9: Update to 4.9.150.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.150.
2019-01-14 01:25:28 -05:00
Mark H Weaver 0dd2a4f324
gnu: linux-libre@4.4: Update to 4.4.170.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.170.
2019-01-14 01:24:40 -05:00
Gabriel Hondet 64d25f0be2
gnu: Add ocaml-merlin.
* gnu/packages/ocaml.scm (ocaml-merlin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
Gabriel Hondet cc353cc067
gnu: Add emacs-tldr.
* gnu/packages/emacs.scm (emacs-tldr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
Meiyo Peng 5144df2c6c
system: Add sudoedit to %setuid-programs.
* gnu/system.scm (%setuid-programs): Add sudoedit.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
Christopher Baines 24a23bea20
gnu: Add python-miniboa.
python2-miniboa is required for the linkchecker testsuite.

* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
2019-01-13 20:47:40 +00:00
Christopher Baines c4aa1ebc81
gnu: python-pillow: Update to 5.4.1.
I'm looking at this, as this release fixes an issue with the Django testsuite:

https://github.com/python-pillow/Pillow/pull/3525

* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
2019-01-13 17:09:52 +00:00
Ricardo Wurmus 14bba460ab
gnu: r-biocgenerics: Move to bioconductor.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
2019-01-13 13:04:18 +01:00
Ricardo Wurmus 7097c7009d
gnu: r-annotate: Move to bioconductor.
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
2019-01-13 13:04:18 +01:00
Ricardo Wurmus c80fb90f4a
gnu: r-vegan: Move from bioinformatics to cran.
* gnu/packages/bioinformatics.scm (r-vegan): Move from here...
* gnu/packages/cran.scm (r-vegan): ...to here.
2019-01-13 13:04:18 +01:00
Efraim Flashner d691e96657
gnu: conda: Use 'invoke'.
* gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
2019-01-13 12:44:03 +02:00
Efraim Flashner 675e7bba3e
gnu: python-conda: All phases return #t.
* gnu/packages/package-management.scm (python-conda)[arguments]: Use
'invoke'.
2019-01-13 12:44:03 +02:00
Efraim Flashner e227f248a6
gnu: python-conda: Fix test suite.
* gnu/packages/package-management.scm (python-conda)[native-inputs]: Add
python-cytoolz.
2019-01-13 12:44:00 +02:00
Ricardo Wurmus 82acd43cbd
gnu: Add r-raster.
* gnu/packages/cran.scm (r-raster): New variable.
2019-01-13 11:14:44 +01:00
Ricardo Wurmus 104e7c3c92
gnu: r-ggformula: Update to 0.9.1.
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
2019-01-13 11:14:43 +01:00
Ricardo Wurmus 3fe45dda0a
gnu: r-tibble: Update to 2.0.1.
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
2019-01-13 11:14:43 +01:00
Ricardo Wurmus 523762e332
gnu: r-psych: Update to 1.8.12.
* gnu/packages/cran.scm (r-psych): Update to 1.8.12.
2019-01-13 11:14:43 +01:00
Efraim Flashner d5fa25a5a0
gnu: bitshuffle: Fix build on armhf-linux.
* gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase
to only use NEON on aarch64.
2019-01-13 11:31:04 +02:00
Rutger Helling 15d2cebf45
gnu: wine-staging: Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
2019-01-13 10:14:49 +01:00
Ricardo Wurmus c8d8925647
gnu: Sort package module references in (gnu packages graphviz).
* gnu/packages/graphviz.scm: Sort package module references; delete
duplicates.
2019-01-13 10:07:06 +01:00
Ricardo Wurmus 8b1c0dab45
gnu: Add python-pygraphviz.
* gnu/packages/graphviz.scm (python-pygraphviz): New variable.
2019-01-13 10:07:06 +01:00
Ricardo Wurmus 9e7f55de45
gnu: Add python-doctest-ignore-unicode.
* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
2019-01-13 10:07:06 +01:00
Ricardo Wurmus c016e390bf
gnu: Add graphviz-2.38.
* gnu/packages/graphviz.scm (graphviz-2.38): New variable.
2019-01-13 10:07:06 +01:00
Marius Bakke 1710ffa4c7
gnu: sudo: Update to 1.8.27.
* gnu/packages/admin.scm (sudo): Update to 1.8.27.
2019-01-13 01:25:18 +01:00
Marius Bakke cb3e055f86
gnu: libassuan: Update to 2.5.2.
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
2019-01-13 01:25:17 +01:00
Marius Bakke 66470a5ad0
gnu: libgxps: Update to 0.3.1.
* gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
2019-01-13 01:25:17 +01:00
Marius Bakke ad55c19211
gnu: libqmi: Update to 1.22.0.
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
2019-01-13 01:25:17 +01:00
Marius Bakke de261ace27
gnu: libmbim: Update to 1.18.0.
* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
2019-01-13 01:25:17 +01:00
Marius Bakke 8bcae1e60c
gnu: libsodium: Update to 1.0.17.
* gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
2019-01-13 01:25:17 +01:00
Marius Bakke 0b014776c9
gnu: exempi: Update to 2.5.0.
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
2019-01-13 01:25:17 +01:00
Marius Bakke 00262db23a
gnu: seabios: Update to 1.12.0.
* gnu/packages/firmware.scm (seabios): Update to 1.12.0.
2019-01-13 01:25:17 +01:00
Marius Bakke b2e765de4c
gnu: httpd: Update to 2.4.37.
* gnu/packages/web.scm (httpd): Update to 2.4.37.
2019-01-13 01:25:17 +01:00
Marius Bakke 1d7fbe0947
gnu: nasm: Update license.
* gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
2019-01-13 01:25:16 +01:00
Marius Bakke 80459f5a21
gnu: nasm: Update home page.
* gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
2019-01-13 01:25:16 +01:00
Marius Bakke 9f1448b74a
gnu: libgphoto2: Update to 2.5.22.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
2019-01-13 01:25:16 +01:00
Marius Bakke ef61969c52
gnu: re2: Update to 2019-01-01.
* gnu/packages/regex.scm (re2): Update to 2019-01-01.
2019-01-13 01:25:16 +01:00
Marius Bakke c06ef010e3
gnu: libsecret: Update to 0.18.7.
* gnu/packages/gnome.scm (libsecret): Update to 0.18.7.
[native-inputs]: Remove INTLTOOL.  Add GETTEXT-MINIMAL.
2019-01-13 01:25:16 +01:00
Marius Bakke 48d5818a0e
gnu: fluidsynth: Update to 2.0.3.
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
2019-01-13 01:25:16 +01:00
Marius Bakke bf135622bd
gnu: rofi: Update to 1.5.2.
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
2019-01-13 01:25:16 +01:00
Marius Bakke 2bb187c484
gnu: xscreensaver: Update to 5.42.
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42.
[arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
2019-01-13 01:25:16 +01:00
Marius Bakke 0c4cee13b2
gnu: libcmis: Update to 0.5.2.
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2.
[source](uri): Use XZ-compressed tarball.
[arguments]: Remove #:phases.  Don't pass "--disable-werror" in #:configure-flags.
2019-01-13 01:25:15 +01:00
Marius Bakke 48a51af9d2
gnu: http-parser: Update to 2.9.0.
* gnu/packages/web.scm (http-parser): Update to 2.9.0.
2019-01-13 01:25:15 +01:00
Marius Bakke 304db09257
gnu: http-parser: Download from git.
* gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
2019-01-13 01:25:15 +01:00
Marius Bakke 9c2094785d
gnu: libetonyek: Adjust inputs.
* gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG.
Move GLM and MDDS to ...
[inputs]: ... here.
[propagated-inputs]: Add LIBLANGTAG and ZLIB.
2019-01-13 01:25:15 +01:00
Marius Bakke 7c3acfcb69
gnu: libetonyek: Update to 0.1.9.
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9.
[arguments]: Remove #:phases.
2019-01-13 01:25:15 +01:00
Marius Bakke b1d2e0b4e0
gnu: libcdr: Update to 0.1.5.
* gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5.
[source](uri): Download over HTTPS.
[arguments]: Remove.
2019-01-13 01:25:15 +01:00
Kei Kebreau 5b9c2690af
gnu: tintin++: Update to 2.01.5.
* gnu/packages/games.scm (tintin++): Update to 2.01.5.
2019-01-12 18:37:38 -05:00
Ricardo Wurmus c6e9b494e8
gnu: r-ruvseq: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus c86fc96987
gnu: r-inspect: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus cad6fb2dec
gnu: Add r-plgem.
* gnu/packages/bioconductor.scm (r-plgem): New variable.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus 45dcd7dcfd
gnu: r-rots: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus 0b469ee225
gnu: r-glimma: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus 7f2b1c4af0
gnu: r-goseq: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus add2b19561
gnu: r-chippeakanno: Update to 3.16.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus c476edc2cd
gnu: r-rtracklayer: Update to 1.42.1.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 1e107b0960
gnu: r-scater: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 0f268bb275
gnu: r-singlecellexperiment: Update to 1.4.1.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus a0224bd4f6
gnu: r-rhdf5lib: Update to 1.4.2.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.2.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 40561d0249
gnu: r-hdf5array: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus ad10b3979d
gnu: r-qvalue: Update to 2.14.1.
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 19cacb5a2d
gnu: r-gviz: Update to 1.26.4.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.4.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus c80595935d
gnu: r-biovizbase: Update to 1.30.1.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 27194effd7
gnu: r-ensembldb: Update to 2.6.3.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.3.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 43931ff72f
gnu: r-dirichletmultinomial: Update to 1.24.1.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 15d89fe9f8
gnu: r-gage: Update to 2.32.1.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 4615cf9f1a
gnu: r-annotationhub: Update to 2.14.2.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.2.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus ab4a862ab8
gnu: r-edaseq: Update to 2.16.3.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.3.
[propagated-inputs]: Add r-biocmanager.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 3bdc41b352
gnu: r-deseq: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 9abf344f8b
gnu: r-msnid: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.1.
2019-01-12 23:35:17 +01:00