guix-devel/gnu/packages
Ricardo Wurmus ca248f1db9
gnu: pigx-rnaseq: Use latest version of Pandoc.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
..
aux-files gnu: linux-libre: Update to 4.18.1. 2018-08-18 06:19:31 -04:00
bootstrap
patches gnu: openexr: Update to 2.3.0. 2018-09-03 18:58:47 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: sudo: Update to 1.8.25. 2018-09-03 18:21:42 +02:00
adns.scm
agda.scm gnu: Add emacs-agda2-mode 2018-07-29 23:33:40 +02:00
aidc.scm
algebra.scm gnu: xtensor: Update to 0.17.1. 2018-08-18 19:48:24 -04:00
android.scm gnu: Add fdroidserver. 2018-07-29 20:00:34 +03:00
animation.scm
anthy.scm
apl.scm
apr.scm
aspell.scm gnu: aspell: Allow filters to be found. 2018-07-23 12:25:31 +02:00
assembly.scm
astronomy.scm gnu: stellarium: Remove redundant FILE-NAME. 2018-08-16 02:40:59 +02:00
attr.scm
audio.scm gnu: lilv: Propagate LV2. 2018-08-30 18:44:51 +02:00
augeas.scm
authentication.scm gnu: Add oath-toolkit. 2018-08-11 02:00:43 +02:00
autogen.scm gnu: autogen: Update to 5.18.14. 2018-08-09 02:17:24 +02:00
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: duplicity: Update to 0.7.18.1. 2018-08-30 03:51:00 +02:00
base.scm gnu: Add glibc@2.28. 2018-08-01 15:48:26 +02:00
bash.scm Switch to Guile-Gcrypt. 2018-09-04 17:25:11 +02:00
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-codedepends: Move from cran to bioconductor. 2018-09-05 20:03:08 +02:00
bioinformatics.scm gnu: pigx-rnaseq: Use latest version of Pandoc. 2018-09-05 20:03:09 +02:00
bison.scm
bittorrent.scm gnu: tremc: Update URLs. 2018-08-15 15:26:06 -04:00
boost.scm gnu: boost: Move 1.59.0 definition to boost.scm. 2018-08-24 00:36:04 +02:00
bootloaders.scm gnu: GRUB: Check for errors from efibootmgr. 2018-08-28 01:19:28 +02:00
bootstrap.scm
build-tools.scm Merge branch 'master' into staging 2018-08-10 15:32:51 +02:00
busybox.scm gnu: busybox: Update to 1.29.1. 2018-07-19 21:29:14 +03:00
c.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm gnu: abcde: Update to 2.9.2. 2018-08-16 05:15:20 +02:00
certs.scm gnu: nss, nss-certs: Update to 3.39 [fixes CVE-2018-12384]. 2018-09-01 13:26:13 +02:00
check.scm gnu: cmocka: Update to 1.1.2. 2018-08-30 19:29:08 +02:00
chemistry.scm gnu: Add avogadro. 2018-08-25 17:05:30 -04:00
chez.scm
ci.scm gnu: cuirass: Add dependency on Guile-Gcrypt. 2018-09-05 15:35:54 +02:00
cinnamon.scm
cluster.scm
cmake.scm
cobol.scm
code.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
commencement.scm
compression.scm Revert "gnu: snappy: Optimise." 2018-08-29 16:58:54 +02:00
compton.scm
conkeror.scm
conky.scm
connman.scm
cook.scm
cpio.scm
cpp.scm Fix some typos. 2018-09-03 18:21:43 +02:00
cppi.scm
cran.scm gnu: r-codedepends: Move from cran to bioconductor. 2018-09-05 20:03:08 +02:00
cross-base.scm
crypto.scm gnu: keyutils: Update to 1.5.11. 2018-08-30 19:28:11 +02:00
cryptsetup.scm
cups.scm gnu: hplip-minimal: Simplify expression. 2018-07-25 20:44:39 +02:00
curl.scm gnu: kurly: Removed unused input. 2018-08-09 08:13:08 -04:00
cyrus-sasl.scm
databases.scm gnu: boost: Move 1.59.0 definition to boost.scm. 2018-08-24 00:36:04 +02:00
datamash.scm
datastructures.scm
dav.scm gnu: vdirsyncer: Update to 0.16.7. 2018-07-20 15:30:22 -04:00
dc.scm
debian.scm gnu: debootstrap: Update to 1.0.106. 2018-07-14 22:51:34 +03:00
debug.scm
dejagnu.scm
dico.scm gnu: dico: Update to 2.6. 2018-08-28 12:35:02 +02:00
dictionaries.scm gnu: translate-shell: Update to 0.9.6.8. 2018-08-14 15:54:29 +02:00
digest.scm
direct-connect.scm
disk.scm gnu: gparted: Update to 0.32.0. 2018-08-30 04:40:31 +02:00
display-managers.scm Merge remote-tracking branch 'origin/master' into qt-updates 2018-07-25 21:30:18 +03:00
django.scm gnu: python-django: Update to 1.11.15 [fixes CVE-2018-14574]. 2018-08-15 15:11:33 +02:00
djvu.scm
dns.scm gnu: knot: Update to 2.7.1. 2018-08-18 16:07:00 +02:00
docbook.scm
docker.scm gnu: python-docker-py: Update to 1.10.6. 2018-07-29 20:00:33 +03:00
documentation.scm
dunst.scm
dvtm.scm
ebook.scm gnu: calibre: Update to 3.28.0. 2018-07-21 19:24:14 +02:00
ed.scm
education.scm gnu: snap: Update to 4.2.1.3. 2018-08-10 00:07:00 +02:00
electronics.scm
elf.scm gnu: elfutils: Update to 0.173. 2018-08-01 13:32:11 +02:00
elixir.scm gnu: Use ©. 2018-08-16 05:21:38 +02:00
emacs.scm gnu: Add emacs-picpocket. 2018-09-04 15:39:43 +02:00
embedded.scm
emulators.scm gnu: dolphin-emu: Update to commit 5f0d825. 2018-09-05 10:23:20 +02:00
enchant.scm
engineering.scm gnu: kicad: Update to 5.0.0. 2018-09-04 15:02:59 +02:00
enlightenment.scm gnu: python-efl: Update to 1.21.0. 2018-09-03 17:32:44 +03:00
entr.scm
erlang.scm gnu: erlang: Update to 21.0.5. 2018-08-16 05:32:47 +02:00
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: python-trezor: Update to 0.10.2. 2018-08-29 14:52:56 -04:00
firmware.scm gnu: seabios: Update source URI. 2018-08-28 01:19:28 +02:00
flashing-tools.scm
flex.scm
fltk.scm gnu: fltk: Update to 1.3.4-2. 2018-07-16 10:02:28 +03:00
fonts.scm gnu: font-gnu-unifont: Update to 11.0.02. 2018-08-24 17:54:10 +02:00
fontutils.scm gnu: ttf2eot: Update to 0.0.3. 2018-08-16 05:32:47 +02:00
forth.scm
fpga.scm
freedesktop.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
freeipmi.scm
fribidi.scm
ftp.scm gnu: lftp: Update to 4.8.4. 2018-08-09 21:19:46 +02:00
fvwm.scm
game-development.scm gnu: openmw: Update to 0.44.0. 2018-08-28 12:23:52 +03:00
games.scm gnu: openrct2: Update to 0.2.1. 2018-09-03 08:22:50 +02:00
gawk.scm
gcal.scm
gcc.scm gnu: gcc@4.8: Fix libsanitizer build issue. 2018-08-19 18:21:24 +02:00
gd.scm gnu: perl-gd: Update to 2.69. 2018-08-30 04:42:51 +02:00
gdb.scm gnu: gdb: Update to 8.1.1. 2018-08-24 17:50:52 +02:00
geo.scm gnu: libgaiagraphics: Fix typo. 2018-07-20 15:34:57 -04:00
gettext.scm gnu: po4a: Update to 0.54. 2018-08-11 02:00:45 +02:00
ghostscript.scm gnu: ghostscript: Fix CVE-2018-10194. 2018-07-17 20:44:52 -04:00
gimp.scm gnu: gimp: Report bugs to Guix. 2018-08-20 16:35:54 +02:00
gkrellm.scm
gl.scm gnu: mesa: Update to 18.1.5. 2018-07-28 21:35:07 +02:00
glib.scm gnu: appstream-glib: Update to 0.7.12. 2018-08-30 18:44:57 +02:00
gnome.scm gnu: xpad: Update to 5.1.0. 2018-08-20 16:35:55 +02:00
gnu-doc.scm
gnu-pw-mgr.scm gnu: gnu-pw-mgr: Update to 2.4.2. 2018-09-03 19:34:24 +03:00
gnucash.scm
gnunet.scm gnu: gnurl: Update to 7.61.0. 2018-08-06 15:12:15 +03:00
gnupg.scm gnu: GnuPG: Update to 2.2.10. 2018-08-30 18:44:57 +02:00
gnustep.scm
gnuzilla.scm gnu: nss, nss-certs: Update to 3.39 [fixes CVE-2018-12384]. 2018-09-01 13:26:13 +02:00
gobby.scm
golang.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
gperf.scm
gprolog.scm
gps.scm
graph.scm gnu: r-igraph: Update to 1.2.2. 2018-09-05 20:03:04 +02:00
graphics.scm gnu: openexr: Update to 2.3.0. 2018-09-03 18:58:47 +02:00
graphviz.scm
groff.scm
groovy.scm
gsasl.scm gnu: libntlm: Update to 1.5. 2018-08-28 22:31:00 +02:00
gstreamer.scm Merge branch 'staging' 2018-08-19 15:24:59 +02:00
gtk.scm gnu: pango: Replace with 1.42.4. 2018-08-30 18:57:10 +02:00
guile-wm.scm
guile.scm gnu: guile-fibers: Install .go files to "…/site-ccache". 2018-09-05 15:35:54 +02:00
gv.scm
gxmessage.scm
ham-radio.scm
hardware.scm gnu: Add msr-tools. 2018-08-30 19:28:10 +02:00
haskell-check.scm Revert "gnu: ghc-tasty: Update to 1.1.0.3." 2018-09-05 20:03:06 +02:00
haskell-crypto.scm
haskell-web.scm gnu: ghc-http: Update to 4000.3.12. 2018-08-16 17:04:12 +02:00
haskell.scm Revert "gnu: ghc-tasty: Update to 1.1.0.3." 2018-09-05 20:03:06 +02:00
hexedit.scm
hugs.scm
hurd.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm gnu: feh: Enable EXIF support. 2018-08-27 17:04:57 -04:00
image.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
imagemagick.scm gnu: ImageMagick: Update to 6.9.10-10. 2018-08-22 03:25:47 -04:00
inklingreader.scm
inkscape.scm
irc.scm Revert "gnu: quassel: Fix building with Qt 5.11." 2018-07-25 15:18:27 +03:00
iso-codes.scm
java.scm Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
javascript.scm gnu: mujs: Update to 1.0.4. 2018-08-30 04:42:54 +02:00
jemalloc.scm
jrnl.scm
julia.scm gnu: julia: Fix 'llvm' version. 2018-07-19 11:46:43 +02:00
kde-frameworks.scm gnu: KDE: Update to 5.49.0. 2018-09-01 02:09:49 -04:00
kde.scm gnu: Remove Krita 3. 2018-09-01 02:09:53 -04:00
kerberos.scm
key-mon.scm
kodi.scm gnu: kodi: Build with mariadb. 2018-07-16 11:02:25 +03:00
language.scm gnu: perl-lingua-en-tagger: Update to 0.29. 2018-08-11 18:55:45 +02:00
ld-wrapper.in
ldc.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm Migrate search.cpan.org home pages to metacpan.org. 2018-08-11 17:22:31 +02:00
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libodfgen: Update to 0.1.7. 2018-08-09 02:19:09 +02:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm gnu: python-pyusb: Update to 1.0.2. 2018-08-17 03:50:35 +02:00
license.scm gnu: licensecheck: Update to 3.0.36. 2018-08-15 20:58:07 +03:00
lighting.scm gnu: ola: Update to 0.10.7. 2018-08-14 15:54:31 +02:00
linux.scm gnu: Add perftest. 2018-09-01 17:51:29 -04:00
lirc.scm
lisp.scm
llvm.scm gnu: Add python-llvmlite. 2018-08-29 17:06:13 +02:00
logging.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm gnu: Add SpaceFM. 2018-08-28 12:35:02 +02:00
lxqt.scm
m4.scm
machine-learning.scm gnu: r-kernlab: Update to 0.9-27. 2018-09-05 20:03:08 +02:00
mail.scm Fix some typos. 2018-09-03 18:21:43 +02:00
make-bootstrap.scm
man.scm
markup.scm gnu: discount: Use HTTPS home page. 2018-08-14 15:54:30 +02:00
marst.scm gnu: Use ©. 2018-08-16 05:21:38 +02:00
mate.scm
maths.scm slepc: Upgrade to 3.9.2. 2018-09-05 08:10:38 -05:00
maven.scm gnu: java: Use java-javaee-servletapi instead of java-tomcat. 2018-07-25 00:27:12 +02:00
mc.scm
mcrypt.scm
medical.scm
mes.scm gnu: mescc-tools: Update to 0.5.2. 2018-08-19 13:30:57 +02:00
messaging.scm gnu: python-nbxmpp: Update to 0.6.7. 2018-09-03 18:21:43 +02:00
microcom.scm
mingw.scm gnu: mingw-w64: Update to 5.0.4. 2018-08-09 02:17:25 +02:00
moe.scm
monitoring.scm gnu: monitoring.scm: Fix copyright line. 2018-09-02 19:18:16 +03:00
mono.scm
moreutils.scm
motti.scm
mp3.scm gnu: packages: mp3: Use HTTPS where possible. 2018-09-05 20:56:55 +08:00
mpd.scm gnu: ncmpc: Update to 0.29. 2018-08-24 02:30:41 +02:00
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: rosegarden: Update to 18.06. 2018-09-02 13:18:28 +08:00
musl.scm
nano.scm
ncdu.scm
ncurses.scm Migrate search.cpan.org home pages to metacpan.org. 2018-08-11 17:22:31 +02:00
netpbm.scm
nettle.scm
networking.scm gnu: net-snmp: Specify '--with-openssl' configuration flag. 2018-08-30 14:46:15 +03:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm
noweb.scm
ntp.scm gnu: ntp: Update to 4.2.8p12 [fix CVE-2018-12327]. 2018-08-17 03:49:19 +02:00
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm gnu: Don't use unstable tarballs in (packages opencl). 2018-08-30 19:28:11 +02:00
openldap.scm gnu: nss-pam-ldapd: Update to 0.9.10. 2018-09-05 11:44:52 +02:00
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix-daemon: Add dependency on Guile-Gcrypt. 2018-09-05 15:48:04 +02:00
parallel.scm gnu: parallel: Update to 20180822. 2018-08-24 00:40:09 +02:00
password-utils.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
patchutils.scm gnu: Add VBinDiff. 2018-08-09 08:07:35 -04:00
pciutils.scm gnu: pciutils: Update to 3.6.1. 2018-07-13 01:05:56 +02:00
pcre.scm
pdf.scm Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
pem.scm
perl-check.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
perl-web.scm
perl.scm Revert "gnu: perl: Add support for cross-compilation" 2018-09-03 23:49:12 +02:00
photo.scm gnu: Krita: Build with libraw 0.18. 2018-09-01 02:09:52 -04:00
php.scm gnu: php: Update to 7.2.8. 2018-07-19 21:29:41 +02:00
pkg-config.scm
plotutils.scm gnu: asymptote: Use minimal texlive-union. 2018-08-21 16:32:22 +02:00
polkit.scm gnu: polkit: Update to 0.115 [fixes CVE-2018-1116]. 2018-08-09 21:19:47 +02:00
popt.scm
pretty-print.scm
printers.scm gnu: robocut: Don't use unstable tarball. 2018-08-30 04:42:38 +02:00
profiling.scm gnu: otf2: Edit description. 2018-08-11 02:00:46 +02:00
protobuf.scm gnu: protobuf-c: Update to 1.3.1. 2018-08-16 02:46:21 +02:00
pth.scm
pulseaudio.scm gnu: pulseaudio: Update to 12.2. 2018-07-17 14:40:13 +02:00
pumpio.scm
pure.scm
pv.scm
python-crypto.scm gnu: python-paramiko: Add some missing dependencies. 2018-08-21 11:04:47 -04:00
python-web.scm gnu: python-ndg-httpsclient: Tweak description. 2018-08-14 15:54:30 +02:00
python.scm gnu: python-tables: Update to 3.4.4. 2018-09-05 12:01:23 +02:00
qt.scm gnu: Add python-pyqt-without-qtwebkit. 2018-08-31 16:37:56 +02:00
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm gnu: serd: Update to 0.30.0. 2018-08-16 16:02:20 +02:00
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2018-09-01. 2018-09-03 18:58:47 +02:00
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: Add ruby-jekyll-paginate-v2. 2018-09-01 23:09:14 +02:00
rush.scm
rust.scm gnu: rust: Move rust-1.19 down. 2018-09-02 00:22:53 +02:00
samba.scm gnu: ppp: Return #t from all phases. 2018-09-03 18:58:47 +02:00
sawfish.scm
scanner.scm gnu: Add hplip-minimal. 2018-07-25 11:52:59 +03:00
scheme.scm gnu: mit-scheme: Use minimal texlive-union. 2018-08-21 16:30:22 +02:00
screen.scm gnu: byobu: Update home page. 2018-08-23 17:16:41 +02:00
scribus.scm
scsi.scm
sdcc.scm
sdl.scm gnu: guile-sdl2: Update to 0.3.0. 2018-07-27 14:19:33 +02:00
search.scm gnu: xapian: Update to 1.4.7. 2018-08-01 13:32:10 +02:00
security-token.scm gnu: yubico-piv-tool: Update to 1.6.1. 2018-08-23 17:16:41 +02:00
selinux.scm
serialization.scm
serveez.scm
shells.scm gnu: Zsh: Patch some tests that began failing in 5.6. 2018-09-04 18:34:01 -04:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm gnu: s6-linux-utils: Update to 2.5.0.0. 2018-08-16 02:40:59 +02:00
skribilo.scm
slang.scm gnu: slang: Update to 2.3.2. 2018-08-28 01:19:28 +02:00
smalltalk.scm
sml.scm
speech.scm
spice.scm gnu: virt-viewer: Update to 7.0. 2018-08-11 05:02:20 +02:00
ssh.scm gnu: dropbear: Fix CVE-2018-15599. 2018-08-28 14:44:11 -04:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-modelmetrics: Update to 1.2.0. 2018-09-05 20:03:09 +02:00
stb.scm gnu: Add stb-image-write. 2018-07-18 01:04:14 +02:00
storage.scm
suckless.scm
swig.scm
sync.scm
syncthing.scm gnu: syncthing: Invoke build steps with INVOKE. 2018-08-19 17:50:48 -04:00
syndication.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm Migrate search.cpan.org home pages to metacpan.org. 2018-08-11 17:22:31 +02:00
telephony.scm gnu: twinkle: Add missing headers 2018-07-17 15:13:48 +02:00
terminals.scm
terraform.scm
tex.scm gnu: texlive-latex-base: Include support files. 2018-08-21 16:32:22 +02:00
texinfo.scm
text-editors.scm
textutils.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
time.scm
tls.scm gnu: p11-kit: Update to 0.23.14. 2018-08-30 18:44:56 +02:00
tmux.scm
tor.scm gnu: tor.scm: Fix copyright line. 2018-07-15 23:14:03 +03:00
toys.scm gnu: sl: Don't use unstable tarball. 2018-08-21 07:17:06 +02:00
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: Add miniupnpc-monero. 2018-07-13 17:28:40 +02:00
uucp.scm
valgrind.scm
version-control.scm gnu: darcs: Update to 2.14.1. 2018-08-23 15:51:43 +05:30
video.scm gnu: simplescreenrecorder: Build against modular Qt. 2018-09-03 18:58:46 +02:00
vim.scm
virtualization.scm gnu: lxc: Update to 3.0.2. 2018-08-17 05:19:05 +02:00
vpn.scm
vulkan.scm gnu: vulkan-headers: Update to 1.1.82.0. 2018-08-07 09:48:29 +02:00
w3m.scm
wdiff.scm
web-browsers.scm gnu: luakit: Fix crash on startup. 2018-08-21 23:27:09 +02:00
web.scm gnu: r-httpuv: Update to 1.4.5. 2018-09-05 20:03:05 +02:00
webkit.scm gnu: webkitgtk: Update to 2.20.5. 2018-08-18 15:16:51 +02:00
wget.scm
wicd.scm
wine.scm gnu: wine-staging: Update to 3.15. 2018-09-02 08:53:03 +02:00
wm.scm gnu: libconfuse: Update to 3.2.2 [fixes CVE-2018-14447]. 2018-08-19 18:40:30 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm Update email for Pierre Neidhardt. 2018-08-27 14:46:26 +02:00
xfce.scm
xfig.scm gnu: xfig: Update to 3.2.7a. 2018-08-11 02:00:44 +02:00
xiph.scm
xml.scm Migrate search.cpan.org home pages to metacpan.org. 2018-08-11 17:22:31 +02:00
xnee.scm
xorg.scm gnu: xorg: Fix typo. 2018-09-05 13:57:43 +02:00
zile.scm