guix-devel/gnu/packages
Ricardo Wurmus 3ede1550e8
gnu: cutadapt: Update to 1.16.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
2018-03-02 23:44:16 +01:00
..
aux-files
bootstrap
patches gnu: icecat: Update to 52.6.0-gnu1. 2018-03-02 01:31:19 -05:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
admin.scm gnu: thermald: Update to 1.7.1. 2018-02-27 16:49:57 +01:00
adns.scm gnu: c-ares: Update to 1.14.0. 2018-02-18 13:05:07 +02:00
agda.scm gnu: Add agda. 2018-02-26 01:42:35 +01:00
aidc.scm
algebra.scm
android.scm
animation.scm
anthy.scm
apl.scm
apr.scm
aspell.scm
assembly.scm gnu: nasm: Update to 2.13.03. 2018-02-19 06:00:31 +01:00
astronomy.scm
attr.scm
audio.scm gnu: liblo: Update to 0.29. 2018-03-01 22:21:00 +01:00
augeas.scm
autogen.scm
autotools.scm gnu: automake: Add 1.16. 2018-02-26 19:47:54 +01:00
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: Fix Borg crashes with Python msgpack > 0.5 2018-02-28 23:43:23 -05:00
base.scm gnu: Graft glibc to allow execution on Linux 2.6.32. 2018-03-01 21:32:36 +01:00
bash.scm
bdw-gc.scm
benchmark.scm gnu: fio: Update to 3.5. 2018-02-22 14:15:17 +01:00
bioconductor.scm gnu: Add r-hpar. 2018-03-02 23:24:57 +01:00
bioinformatics.scm gnu: cutadapt: Update to 1.16. 2018-03-02 23:44:16 +01:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm gnu: american-fuzzy-lop: Change custom qemu input. 2018-02-22 22:15:21 +02:00
bootstrap.scm gnu: Add basic support for s390x-linux-gnu targets. 2018-02-19 22:22:21 +01:00
build-tools.scm
busybox.scm
c.scm
calcurse.scm
calendar.scm gnu: calendar.scm: Use license: prefix. 2018-02-20 14:58:52 +01:00
ccache.scm gnu: ccache: Update to 3.4.1. 2018-02-19 06:00:31 +01:00
cdrom.scm gnu: dvdstyler: Remove hard-coded version string. 2018-02-26 20:13:08 +01:00
certs.scm
check.scm gnu: python-fixtures: Update to 3.0.0. 2018-02-28 13:58:43 +01:00
chemistry.scm
chez.scm
ci.scm gnu: cuirass: Update to aa4c778. 2018-03-01 17:38:55 +01:00
cinnamon.scm
cmake.scm
cobol.scm
code.scm
commencement.scm gnu: commencement: Add commentary regarding grafts. 2018-02-27 05:29:37 +01:00
compression.scm
compton.scm
conkeror.scm
conky.scm
connman.scm
cook.scm gnu: cook: Update phase style. 2018-02-21 15:02:47 +01:00
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-powerplus. 2018-03-02 23:07:26 +01:00
cross-base.scm
crypto.scm gnu: rhash: Remove `outputs' argument from phases. 2018-02-24 17:02:43 +05:30
cryptsetup.scm
cups.scm
curl.scm
cyrus-sasl.scm
databases.scm gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058]. 2018-03-01 20:01:48 -05:00
datamash.scm
datastructures.scm
dav.scm
dc.scm
debug.scm gnu: delta: Remove redundant code. 2018-03-02 15:52:56 +01:00
dejagnu.scm
dico.scm
dictionaries.scm
digest.scm
direct-connect.scm
disk.scm gnu: ddrescue: Update to 1.23. 2018-02-19 17:47:11 +01:00
display-managers.scm
django.scm gnu: python-django: Update to 1.11.10. 2018-02-24 19:40:27 +00:00
djvu.scm gnu: djvulibre: Remove timestamps from .svgz files. 2017-09-01 11:05:32 +02:00
dns.scm gnu: knot: Update to 2.6.5. 2018-02-19 05:57:19 +01:00
docbook.scm gnu: dblatex: Update to 0.3.10. 2018-02-28 04:13:19 +01:00
docker.scm
documentation.scm
dunst.scm
dvtm.scm
ebook.scm gnu: calibre: Spell ‘e-book’ consistently. 2018-02-23 16:00:07 +01:00
ed.scm
education.scm
electronics.scm
elf.scm gnu: nix, patchelf: Use HTTPS for nixos.org home pages. 2018-02-20 05:02:44 +01:00
elixir.scm
emacs.scm gnu: Remove duplicate definition of emacs-esxml. 2018-02-28 23:05:06 +01:00
embedded.scm gnu: spin2cpp: Update to 3.6.4. 2018-02-27 16:49:59 +01:00
emulators.scm gnu: dolphin-emu: Enable Vulkan video backend. 2018-02-23 10:17:48 +01:00
enchant.scm
engineering.scm
enlightenment.scm gnu: efl: Use separate "include" output. 2018-03-01 22:19:37 +02:00
entr.scm
erlang.scm gnu: erlang: Use HTTPS home page. 2018-02-19 05:57:17 +01:00
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm
file.scm
finance.scm
firmware.scm gnu: ath9k-htc-firmware: Use INSTALL-FILE. 2018-03-02 15:52:54 +01:00
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: font-hack: Update to 3.002. 2018-02-20 03:31:09 +01:00
fontutils.scm gnu: Use HTTPS for supported freedesktop.org home pages. 2018-02-26 20:13:10 +01:00
forth.scm
fpga.scm gnu: iverilog: Use Texinfo in description. 2018-02-19 06:00:33 +01:00
freedesktop.scm gnu: Use HTTPS for supported freedesktop.org home pages. 2018-02-26 20:13:10 +01:00
freeipmi.scm
fribidi.scm gnu: fribidi: Update to 1.0.1. 2018-02-25 18:35:25 +01:00
ftp.scm gnu: libfilezilla: Update to 0.12.1. 2018-02-26 20:13:07 +01:00
fvwm.scm
game-development.scm gnu: godot: Update to 3.0.1. 2018-02-27 16:49:59 +01:00
games.scm gnu: golly: Fix source url. 2018-03-01 11:19:56 -06:00
gawk.scm
gcal.scm
gcc.scm
gd.scm gnu: perl-gd: Update to 2.68. 2018-02-27 16:49:58 +01:00
gdb.scm
geo.scm gnu: Add spatialite-gui. 2018-02-22 14:35:51 +01:00
gettext.scm gnu: po4a: Update home page. 2018-02-22 17:24:36 +01:00
ghostscript.scm gnu: Use HTTPS for supported freedesktop.org home pages. 2018-02-26 20:13:10 +01:00
gimp.scm
gkrellm.scm
gl.scm gnu: mesa-utils: Update to 8.4.0. 2018-02-23 15:36:34 +01:00
glib.scm gnu: Add perl-glib. 2018-02-28 16:57:33 +01:00
gnome.scm gnu: nautilus: Use meson-build-system, update to 3.26.2. 2018-03-01 14:00:21 +01:00
gnu-doc.scm gnu: Update gnu-standards to 2018-02-18. 2018-02-18 03:19:26 +01:00
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm gnu: gnupg: Update to 2.2.5. 2018-02-22 14:42:47 -05:00
gnustep.scm
gnuzilla.scm gnu: icecat: Add more fixes from upstream mozilla-esr52. 2018-03-02 01:31:30 -05:00
gobby.scm
golang.scm gnu: Add go@1.10. 2018-02-26 17:34:14 -05:00
gperf.scm
gprolog.scm
gps.scm
graph.scm gnu: Add r-rbiofabric. 2018-03-02 22:23:18 +01:00
graphics.scm
graphviz.scm
groff.scm
gsasl.scm
gstreamer.scm gnu: Use HTTPS for supported freedesktop.org home pages. 2018-02-26 20:13:10 +01:00
gtk.scm gnu: Add perl-gtk2. 2018-02-28 16:59:55 +01:00
guile-wm.scm
guile.scm
gv.scm
gxmessage.scm
ham-radio.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm gnu: Add ghc-uri-encode. 2018-02-26 01:36:16 +01:00
haskell.scm gnu: ghc-abstract-deque: Fix typos in description. 2018-03-02 15:52:55 +01:00
hexedit.scm
hugs.scm
hurd.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm gnu: feh: Update to 2.24. 2018-02-28 20:01:03 +01:00
image.scm gnu: Add libiptcdata. 2018-02-26 17:05:46 -05:00
imagemagick.scm gnu: imagemagick: Update to 6.9.9-36. 2018-03-01 17:40:49 +01:00
indent.scm
inklingreader.scm
inkscape.scm
irc.scm
iso-codes.scm
java.scm gnu: java-bouncycastle-bcpkix: Use invoke. 2018-02-28 23:05:06 +01:00
javascript.scm
jemalloc.scm
jrnl.scm
julia.scm
kde-frameworks.scm gnu: phonon: Update to 4.10.0. 2018-02-27 16:49:58 +01:00
kde.scm gnu: qca: Use mirror://kde scheme for source-url. 2018-02-18 19:21:39 +01:00
kerberos.scm
key-mon.scm
kodi.scm gnu: kodi: Update to 18.0_alpha-8.ec16dbc. 2018-02-25 18:35:25 +01:00
language.scm
ld-wrapper.in
ldc.scm gnu: ldc: Add comment. 2018-02-21 12:07:13 +01:00
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm gnu: Use HTTPS for supported freedesktop.org home pages. 2018-02-26 20:13:10 +01:00
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm gnu: python-cffi: Update phase style. 2018-02-26 20:13:11 +01:00
libftdi.scm gnu: libftdi: Use HTTPS home page. 2018-03-01 22:21:00 +01:00
libidn.scm
libphidget.scm
libreoffice.scm gnu: libe-book: Update to 0.1.3. 2018-03-01 17:40:49 +01:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm gnu: Add licensecheck. 2018-02-24 20:01:31 +03:00
lighting.scm gnu: ola: Update to 0.10.6. 2018-02-19 23:14:01 +01:00
linux.scm gnu: zerofree: Update to 1.1.1. 2018-03-02 15:52:57 +01:00
lirc.scm
lisp.scm gnu: ccl: Patch absolute file-name. 2018-02-28 22:11:21 +02:00
llvm.scm
logging.scm
lolcode.scm
lout.scm gnu: lout: Update phase style. 2018-02-21 15:02:48 +01:00
lsof.scm gnu: lsof: Run tests. 2018-02-19 06:00:30 +01:00
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm
mail.scm gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461]. 2018-02-28 22:58:23 +01:00
make-bootstrap.scm gnu: guile-static-stripped: Remove dependency on bash-minimal. 2018-02-28 22:47:48 +01:00
man.scm
markup.scm
marst.scm
mate.scm
maths.scm gnu: dionysus: Update to 1.4.0. 2018-02-28 14:42:36 +02:00
mc.scm
mcrypt.scm
medical.scm
mes.scm gnu: nyacc: Update to 0.83.3. 2018-02-19 06:00:32 +01:00
messaging.scm
microcom.scm
mingw.scm
moe.scm gnu: moe: Update to 1.9. 2017-06-28 22:54:14 -05:00
monitoring.scm gnu: nagios: Update to 4.3.4. 2018-03-01 22:21:00 +01:00
mono.scm
moreutils.scm
motti.scm
mp3.scm gnu: chromaprint: Update to 1.4.3. 2018-02-19 23:14:02 +01:00
mpd.scm gnu: mpd-mpc: Update to 0.29. 2018-02-22 01:40:29 -05:00
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: Add patchmatrix. 2018-03-01 21:12:59 +01:00
musl.scm gnu: musl: Use HTTPS home page. 2018-02-23 16:00:04 +01:00
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: strongswan: Separate phases. 2018-02-22 17:24:37 +01:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm
noweb.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
openldap.scm gnu: nss-pam-ldapd: Update to 0.9.9. 2018-02-19 18:16:16 +01:00
openstack.scm gnu: python-oslo.log: Update to 3.36.0. 2018-02-28 13:59:03 +01:00
orpheus.scm
ots.scm
package-management.scm gnu: gcab: Update to 1.1. 2018-02-27 16:49:57 +01:00
parallel.scm gnu: parallel: Update to 20180222. 2018-02-23 16:00:03 +01:00
password-utils.scm gnu: Add sala. 2018-02-28 22:47:48 +01:00
patchutils.scm
pciutils.scm gnu: pciutils: Use HTTPS home page. 2018-02-19 23:14:01 +01:00
pcre.scm
pdf.scm
pem.scm
perl-check.scm gnu: perl-test-harness: Update to 3.41. 2018-03-02 15:52:56 +01:00
perl-web.scm
perl.scm gnu: perl-mozilla-ca: Update to 20180117. 2018-03-02 15:52:56 +01:00
photo.scm gnu: Add RawTherapee. 2018-02-26 17:05:46 -05:00
php.scm gnu: php: Fix test failure. 2018-03-01 22:25:28 +01:00
pkg-config.scm
plotutils.scm
polkit.scm gnu: polkit: Fix 'invoke' call. 2018-02-27 09:22:24 +01:00
popt.scm
pretty-print.scm gnu: highlight: Don't hard-code Lua version. 2018-03-02 15:52:56 +01:00
profiling.scm
protobuf.scm
pth.scm
pulseaudio.scm gnu: Use HTTPS for supported freedesktop.org home pages. 2018-02-26 20:13:10 +01:00
pumpio.scm gnu: pumpa: Update to 0.9.3. 2018-02-22 17:24:36 +01:00
pv.scm
python-crypto.scm gnu: python-pyopenssl: Update to 17.5.0. 2018-02-20 16:03:07 +01:00
python-web.scm gnu: python-webencodings: Fix typo in description. 2018-03-02 15:52:57 +01:00
python.scm gnu: python-xopen: Update to 0.3.2. 2018-03-02 23:43:55 +01:00
qt.scm gnu: qscintilla: Use HTTPS home page. 2018-03-02 15:52:55 +01:00
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
regex.scm
robotics.scm
rrdtool.scm gnu: rrdtool: Use a fixed version of tzdata for tests. 2018-02-20 14:58:52 +01:00
rsync.scm
ruby.scm
rush.scm
rust.scm
samba.scm gnu: ldb: Update to 1.3.2. 2018-02-28 20:17:31 +01:00
sawfish.scm
scanner.scm
scheme.scm gnu: mit-scheme: Update phase style. 2018-02-22 17:24:36 +01:00
screen.scm
scribus.scm
scsi.scm
sdcc.scm gnu: sdcc: Fix typo in description. 2018-03-01 22:21:02 +01:00
sdl.scm
search.scm
security-token.scm gnu: ccid: Update to 1.4.29. 2018-02-22 14:35:51 +01:00
selinux.scm
serialization.scm
serveez.scm
shells.scm
shellutils.scm
simh.scm
simulation.scm
skarnet.scm gnu: s6-networking: Update to 2.3.0.2. 2018-02-23 16:00:06 +01:00
skribilo.scm
slang.scm gnu: slang: Update to 2.3.1a. 2018-02-21 15:02:47 +01:00
smalltalk.scm
sml.scm
speech.scm
spice.scm
ssh.scm gnu: dropbear: Update to 2018.76. 2018-02-28 22:58:23 +01:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-lubridate: Update to 1.7.3. 2018-03-01 21:28:53 +01:00
storage.scm
suckless.scm gnu: fortify-headers: Update to 0.9. 2018-03-02 15:52:55 +01:00
swig.scm
sync.scm
syncthing.scm
syndication.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm
telephony.scm
terminals.scm
tex.scm
texinfo.scm
text-editors.scm
textutils.scm gnu: dbacl: Use HTTPS home page. 2018-03-01 22:20:59 +01:00
time.scm gnu: python-monotonic: Update to 1.4. 2018-02-28 13:59:03 +01:00
tls.scm gnu: p11-kit: Update to 0.23.10. 2018-02-28 20:13:41 +01:00
tmux.scm
tor.scm gnu: onionshare: Update phase style. 2018-03-01 22:21:01 +01:00
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: miniupnpc: Update to 2.0.20180222. 2018-02-23 20:40:51 +01:00
uucp.scm
valgrind.scm
version-control.scm gnu: fossil: Update phase style. 2018-03-02 15:52:54 +01:00
video.scm gnu: gnome-mpv: Update to 0.14. 2018-03-02 15:52:54 +01:00
vim.scm
virtualization.scm gnu: qemu: Update to 2.11.1. 2018-02-20 17:44:43 +01:00
vpn.scm gnu: tinc: Update to 1.0.33. 2018-02-26 20:13:08 +01:00
vulkan.scm gnu: vulkan-icd-loader: Update to 1.0.68.0. 2018-02-23 18:17:37 +01:00
w3m.scm
wdiff.scm
web-browsers.scm
web.scm gnu: nghttp2: Update to 1.31.0. 2018-03-02 15:52:57 +01:00
webkit.scm
wget.scm
wicd.scm
wine.scm
wm.scm gnu: Add cwm. 2018-02-22 14:24:02 -05:00
wordnet.scm
wv.scm
wxwidgets.scm Revert "gnu: Remove wxwidgets@2.8." 2018-02-22 14:35:51 +01:00
xdisorg.scm gnu: Use HTTPS for supported freedesktop.org home pages. 2018-02-26 20:13:10 +01:00
xfce.scm gnu: xfburn: Update to 0.5.5. 2018-02-27 16:49:58 +01:00
xfig.scm
xiph.scm
xml.scm gnu: html-xml-utils: Update to 7.6. 2018-02-28 22:58:23 +01:00
xnee.scm
xorg.scm gnu: xorgproto: Update to 2018.4. 2018-03-01 17:40:48 +01:00
zile.scm