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527 Commits (48c99c791fb4230ad347ff926978e6775cc193af)

Author SHA1 Message Date
Shuhei Kadowaki 60fc450c88
Merge pull request #341 from JunoLab/avi/preprefactor 
pre #338
 2020-05-24 03:14:11 +09:00
Shuhei Kadowaki 1fb40645ed refactors: almost just about code styles, doesn't change any behaviour 2020-05-24 02:36:32 +09:00
Shuhei Kadowaki 9ca328f468 add TODO 2020-05-23 23:50:28 +09:00
Shuhei Kadowaki d84504267b addspaces -> addlines 2020-05-23 23:49:29 +09:00
Shuhei Kadowaki 29ff436a00 consistent and clearer terminology: 
- formatted -> body/rendered
- wdate -> weave_date
- wsource (or source) -> weave_source
- wdate -> weave_date
 2020-05-23 23:05:36 +09:00
Shuhei Kadowaki f4caba1561 maxlog for deprecation warning 2020-05-23 22:51:17 +09:00
Shuhei Kadowaki 3c76b804dc separate format logic from WeaveDoc: 
- this is just a first step, though
 2020-05-23 22:16:56 +09:00
Shuhei Kadowaki f71a491847 rm unused stuff 2020-05-23 22:04:01 +09:00
Shuhei Kadowaki af45cc01ab even more clean up 2020-05-23 22:03:40 +09:00
Shuhei Kadowaki 31f670b74c
Merge pull request #339 from JunoLab/avi/pandoc 
refactor pandoc code:
 2020-05-23 21:59:42 +09:00
Shuhei Kadowaki 0f94c7b49c fix case when `weave_options` are empty 2020-05-23 21:18:16 +09:00
Shuhei Kadowaki 54ccd9b1ed refactor pandoc code: 
- more sensible err handling
- annotate TODO comments
 2020-05-23 21:15:05 +09:00
Shuhei Kadowaki 3f4ba672b3 Revert "rm unused dict push!" 
This reverts commit ef295e9a24.
 2020-05-23 20:07:59 +09:00
Shuhei Kadowaki 745abe176c Revert "rm unused field from WeaveDoc" 
This reverts commit 301f9b2f27.
 2020-05-23 20:07:41 +09:00
Shuhei Kadowaki 301f9b2f27 rm unused field from WeaveDoc 2020-05-23 20:03:38 +09:00
Shuhei Kadowaki ef295e9a24 rm unused dict push! 2020-05-23 19:52:00 +09:00
Shuhei Kadowaki a03a1d4c34 EXAMPLE_FOLDER 2020-05-23 19:42:19 +09:00
Shuhei Kadowaki 8aa8f0c4df easy doc access 2020-05-18 22:59:18 +09:00
Shuhei Kadowaki b4c2bbea45 deprecate `options`, change to `weave_options`: 
- avoid unexpected header stripping (`options` sounds too general)
- deprecated `options` support will be remove within ≥v0.11
 2020-05-18 22:10:26 +09:00
Shuhei Kadowaki 4113402908 rename `latex_keep_unicode` to `keep_unicode`, handle this in `format` 2020-05-17 12:17:24 +09:00
Shuhei Kadowaki 249c94a5c1 avoid manipulation of global struct 2020-05-17 12:14:30 +09:00
Shuhei Kadowaki 101b170ea6 some support for dynamic YAML `weave` configuration 2020-05-17 11:45:39 +09:00
Shuhei Kadowaki 6d1732247a a bit refactor 2020-05-17 11:10:25 +09:00
Shuhei Kadowaki b7233b468e no `term` option for inline code chunk 2020-05-17 11:05:30 +09:00
Shuhei Kadowaki 405deb3681 reorder things 2020-05-17 10:30:33 +09:00
Shuhei Kadowaki 87ba87d2d1 resolve CSS theme path relative to a target document when given in YAML 2020-05-17 10:29:01 +09:00
Shuhei Kadowaki cec388e94f add Weave version 2020-05-17 01:16:59 +09:00
Shuhei Kadowaki 0831144393
Merge pull request #311 from JunoLab/avi/limitdisplay 
limit display:
 2020-05-17 00:18:12 +09:00
Shuhei Kadowaki e60f066d31 fix when a header value is not `String` 2020-05-16 23:45:41 +09:00
Shuhei Kadowaki f86f5a7bd0 preserve header when weaving to Hugo markdown 2020-05-16 23:31:27 +09:00
Shuhei Kadowaki 5fb3fae741 no ANSI chars 2020-05-16 23:11:05 +09:00
Shuhei Kadowaki 7b53eb8e9e limit display: 
- for now if we try to render a "big object" like a table with many 
rows, Weave tries to render all of the result and it can lead to that a 
document can't even be opened
 2020-05-16 23:11:05 +09:00
Shuhei Kadowaki 58bc741b7f detect doctype when running a doc 2020-05-16 23:10:44 +09:00
Shuhei Kadowaki bca3ee7dd1 LTS compat ... 2020-05-16 21:04:58 +09:00
Shuhei Kadowaki ba8e9f4724 fix header handling in noweb doc 2020-05-16 20:33:48 +09:00
Shuhei Kadowaki 99a50ad86f integrate with Juno progress bar 2020-05-16 19:52:56 +09:00
Shuhei Kadowaki 2a6ee38850 fix code chunk line numbers 2020-05-16 19:52:24 +09:00
Shuhei Kadowaki c1cf566c53 refactor format.jl 2020-05-16 17:59:17 +09:00
Shuhei Kadowaki 0d3d3a8c19 rm code ... 2020-05-16 17:59:04 +09:00
Shuhei Kadowaki 6d91ab6512 no explicit header support in `convert_doc` 2020-05-16 17:53:46 +09:00
Shuhei Kadowaki 17c2151d86 a bit refactor: 
- don't match slide `---` separator as header start/end
- recognize `doctype` in construction
 2020-05-16 01:49:30 +09:00
Shuhei Kadowaki 492d1f330b dynamic YAML option specification 2020-05-16 01:47:52 +09:00
Shuhei Kadowaki 42115e7d52 rename writer.jl -> converter.jl 2020-05-16 00:43:33 +09:00
Shuhei Kadowaki 094ebea6cf simplify converter functions 2020-05-16 00:32:28 +09:00
Shuhei Kadowaki 7c2eb23bcd small refactors (mostly about code styles) 2020-05-16 00:32:09 +09:00
Shuhei Kadowaki bc0f687352 rm header_args 2020-05-10 15:55:37 +09:00
Shuhei Kadowaki 2e19930565
Merge pull request #323 from JunoLab/avi/bang 
use bangs for destructive functions
 2020-05-10 14:28:40 +09:00
Shuhei Kadowaki 54e50a54cb users should load Cairo 2020-05-10 14:07:55 +09:00
Shuhei Kadowaki d809ddf703
Merge pull request #322 from JunoLab/avi/require 
don't load Weave Plots submodules into user's module
 2020-05-10 14:06:09 +09:00
Shuhei Kadowaki e459bfb87d use bangs for destructive functions 2020-05-10 13:56:09 +09:00
Shuhei Kadowaki ede31bcf74 don't load Weave Plots submodules into user's module 2020-05-10 13:35:54 +09:00
Shuhei Kadowaki e89d5da250 rm unncessary `Symbol` spec: 
- change `informat` and `doctype` options to 
`Union{NothingAbstractString}`
 2020-05-10 13:20:44 +09:00
Shuhei Kadowaki 4b6fc2d913 fix typings 2020-05-10 00:01:49 +09:00
Shuhei Kadowaki c825076e36 simplify imports 2020-05-10 00:01:41 +09:00
Shuhei Kadowaki 68f72bdfb3 small updates 2020-05-09 23:55:11 +09:00
Shuhei Kadowaki 4dae2a0816 `WEAVE_OPTION_NAME` 2020-05-09 22:42:05 +09:00
Shuhei Kadowaki 36bdd4f82b remove weird default constructor for `WeaveDoc` 2020-05-09 22:33:58 +09:00
Shuhei Kadowaki 5f7cf529b9 chunks.jl -> types.jl 2020-05-09 21:03:00 +09:00
Shuhei Kadowaki 750b7624e0 refactor readers.jl: 
- avoid unnecessary overloading on `parse_doc`
- split readers.jl into multiple scripts
 2020-05-09 20:17:53 +09:00
Shuhei Kadowaki 79579053f1 refactor tests: 
- simpler module evaluation test
- remove useless include_weave test
 2020-05-09 17:27:51 +09:00
Shuhei Kadowaki d4413a1d78 clear sandbox module correctly 2020-05-09 16:09:11 +09:00
Shuhei Kadowaki 5dbe54316b isnothing utility 2020-05-09 11:26:32 +09:00
Shuhei Kadowaki e41202d3ff no weird Base.run overload 2020-05-09 11:25:19 +09:00
Shuhei Kadowaki 14e7635458 getvalue -> get 2020-05-09 11:25:19 +09:00
Shuhei Kadowaki 4e7fda212d ensure Weave display pops out even if an internal err occurs 2020-05-09 02:48:56 +09:00
Shuhei Kadowaki 2376a9dae9 format things 2020-05-08 23:39:17 +09:00
Shuhei Kadowaki 020b4353a4 fix indents, Github -> GitHub 2020-05-06 23:37:04 +09:00
Shuhei Kadowaki db13be44e3 fix no header case 2020-04-18 19:18:03 +09:00
Shuhei Kadowaki 95e32c4908 more graceful header handling 2020-04-18 19:10:07 +09:00
Fredrik Bagge Carlson f126e1c7a9 fix formatting 2020-04-17 12:16:56 +08:00
Fredrik Bagge Carlson 7e88052db3 keep latex figures 2020-04-17 12:16:56 +08:00
Shuhei Kadowaki d40e21ea35 improve documentations around notebooks 2020-03-27 20:43:33 +09:00
Shuhei Kadowaki a759dc10bd specify default output format (HMTL) for notebooks 2020-03-27 20:34:06 +09:00
Shuhei Kadowaki 840f1b3b8f simpler doc APIs 2020-03-27 18:45:04 +09:00
Shuhei Kadowaki efccb5c7f1 more documentation improve 2020-03-27 10:16:57 +09:00
Shuhei Kadowaki 9e9fe45231 improve documentations 2020-03-26 21:41:54 +09:00
Shuhei Kadowaki f8c32c865b more type annotate APIs 2020-03-26 17:35:05 +09:00
Shuhei Kadowaki 16bc2d7be9 immutable structs for result trait 2020-03-18 10:50:01 +09:00
Shuhei Kadowaki 6339303569 rm Compat 2020-03-18 08:53:25 +09:00
Shuhei Kadowaki 1f8514a737 fixes: #105, #288 
closes: #289
 2020-03-17 10:57:36 +09:00
Shuhei Kadowaki d8595e266f more doc fixes 2020-03-06 10:14:21 +09:00
aviatesk e18c5f35e3 update comment 2020-01-07 23:51:55 +09:00
aviatesk 652b19cd0f fixes #232 2020-01-05 15:18:41 +09:00
Sebastian Pfitzner 3d673d0338
Merge pull request #244 from sebastianpech/disable-unicode-escape 
Add argument to weave function to disable unicode escape
 2019-10-21 19:48:29 +02:00
Sebastian Pech c9e26d5638 Rename escape_unicode and move to tex based formatdicts 2019-10-15 21:48:05 +02:00
Sebastian Pech da66a8f272 Add escape_unicode to docstring 2019-10-15 14:20:11 +02:00
Sebastian Pech bd5ff7031c Add argument for disabling unicode escaping 2019-09-05 10:13:49 +02:00
Sebastian Pech fa4a1a629d Add function to convert percentages to matching latex widths 2019-08-25 19:19:31 +02:00
Sebastian Pech eeb723981d Fix printing [] if fig_env is empty string 2019-08-25 10:25:57 +02:00
Sebastian Pech 474cb6e4b2 Combine formatfigures for Tex and JMarkdown2tex 2019-08-25 09:39:03 +02:00
Sebastian Pech 4d7a444246 Fix displayed output produced by capture_output 2019-08-21 15:03:22 +02:00
ilia-kats 02134d29d5 use the minted jlcon lexer for terminal mode (#205) 2019-06-27 09:00:43 +03:00
Sebastian Pfitzner ed41be610a
Merge pull request #221 from thofma/master 
Add html rendering of Markdown tables
 2019-06-26 12:10:46 +02:00
Tommy Hofmann 1c0506342e Add html rendering of Markdown tables 2019-06-26 11:19:11 +02:00
Sebastian Pfitzner 9f664ba5a6
Merge pull request #202 from tshort/hook-fix 
Fix hooks and add a push/pop hook to the test
 2019-06-25 18:10:38 +02:00
Tamas Nagy df7f0d1f3c
Merge pull request #215 from Oblynx/patch-1 
Fix mpastell/Weave.jl#214
 2019-06-19 10:39:37 -07:00
Arnav Sood 5d3e05511e allow configuration of jupyter command while weaving notebooks, fixes #194 
* notebook refactor and tests

* update PR

* add jupyter test jmd

* add back full warnings and remove debugging output

* Update test filename [ci skip]

* Conda for CI

* update for CI?

* remove Conda, IJulia, and tests for now

* Project.toml changes suggested by tinagly

* revive travis tests

* comment out nb tests
 2019-06-19 10:26:13 -07:00
Konstantinos Samaras-Tsakiris ea1de0fb9e
Fix mpastell/Weave.jl#214 
Fixes incorrect UTF-8 string handling as described in https://github.com/mpastell/Weave.jl/issues/214.
 2019-06-04 21:02:40 +03:00
tshort bd69ef1f59 Fix hooks and add a push/pop hook to the test 2019-04-27 13:17:29 -04:00
Matti Pastell 95e860816c Restore .ps and .js.svg to Gadfly 2019-03-11 15:13:30 +02:00
Matti Pastell 99db6a9406 Actually fix include_weave 2019-03-11 14:25:17 +02:00
Matti Pastell 8194c8a1b8 Fix `include_weave`. Closes #152. 2019-03-11 14:05:06 +02:00
Matti Pastell 83e2e0ae20 Add tests for inline code 2019-03-11 13:39:21 +02:00
Matti Pastell 35addd2b50 Fixes to option parsing, gadfly pdf, stripping header, add tests 2019-03-11 10:23:31 +02:00
Matti Pastell 4338fc4b07 Make out_path and template path relative to document 2019-03-10 22:53:00 +02:00
Matti Pastell 6f83f1abf5 Add example beamer document 2019-03-10 20:10:30 +02:00
Matti Pastell 3488af5534 Add docs for inline output, make figure output inline 2019-03-10 19:23:18 +02:00
Matti Pastell 4ab1c09b8c Allow using MustacheTokens as template directly 2019-03-10 17:51:19 +02:00
Matti Pastell e7a10eacdc Don't use isnothing 2019-03-10 17:20:43 +02:00
Matti Pastell 37aa0237a8 Add new syntax for inline code and fix output in md2* formats 2019-03-06 22:27:47 +02:00
Matti Pastell 1de36fd1f5 Fix Jupyter header 2019-03-06 10:41:31 +02:00
Matti Pastell 4e70d32901 Don't run latex on travis 2019-03-05 20:18:58 +02:00
Matti Pastell 6082786f92 Allow setting document options in YAML header 2019-03-05 19:36:27 +02:00
Matti Pastell 52f3a23d28 Allow format specific options in header 2019-03-05 16:44:10 +02:00
Matti Pastell e9ea54bc1b Allow setting options in document header. Closes #189 2019-03-04 11:10:02 +02:00
Matti Pastell a14b7a8f80 Return weaved file path from weave function. Closes #190 2019-03-04 09:45:30 +02:00
Matti Pastell edd558de0e Add support for comments in Markdown. Closes #97 2019-02-28 16:17:03 +02:00
Matti Pastell 710b67ca45 Add markdown flavor for improved math support. Closes #182 2019-02-27 18:21:05 +02:00
Matti Pastell f2773376d9 Merge branch 'noalign' 2019-02-27 16:43:15 +02:00
Matti Pastell 6a30aa20f2 Remove align environment from math output #182 2019-02-27 16:42:51 +02:00
Matti Pastell 73584edd34 Strip ANSI from text output #184 2019-02-27 16:19:14 +02:00
Matti Pastell 8d1bb63b0a Render markdown output in md2* formats. Fixes #156 2019-02-27 15:03:33 +02:00
Matti Pastell e52083c42a Display assigned objects from chunk's last line 2019-02-27 12:42:43 +02:00
Matti Pastell 056db5141a Add option to skip chunks in notebook 2019-02-27 10:15:56 +02:00
Matti Pastell bad5650027 Fix \bf and \frak symbols in md2tex. Improves #181 2019-02-26 17:38:28 +02:00
Toby Driscoll 26cf943d25 New output css class for md2html (#172) 
* New output css class for md2html

* margins and padding taken from Highlights.jl
 2019-02-26 09:16:27 +02:00
Matti Pastell 6e0daf9335 Render header in notebooks, fixes #179 2019-02-26 09:12:28 +02:00
Matti Pastell 7587b4f9cf
Fix line wrapping (#180) 
* Fix line wrapping

* Don't chop from tail

* Test wrapping unicode
 2019-02-26 00:09:40 +02:00
Matti Pastell cb791e8b69 Fix notebook support. Closes #173 2019-02-25 19:46:25 +02:00
Christopher Rackauckas 73f0e1e998 Remove precompile statement (#177) 2019-02-25 19:29:02 +02:00
schrimpf adf7338f34 Allow errors (#174) 
* Added ability to pass aditional options to nbconvert. Main purpose is
to pass "--allow-errors"

* Changed IJulia.jupyter to IJulia.JUPYPTER to match change in IJulia.jl
 2019-02-25 19:24:01 +02:00
Matti Pastell f1a85d3726 Merge branch 'master' of https://github.com/mpastell/Weave.jl 2019-02-08 16:03:23 +02:00
Matti Pastell 4a7d63bc7e Clean up and fix svg embedding 2019-02-08 16:01:25 +02:00
Tamas Nagy caf64b2407 [WIP] Add Gadfly support back (#163) 
* add back gadfly support

* fix svg embed encoding
 2019-02-07 19:28:06 +02:00
Dave Kleinschmidt 4bf8e0e209 check fig_ext to choose preferred mimetype in display(::Report, d) 2019-02-01 10:59:39 -05:00
Dave Kleinschmidt d0c71ba556 use Base.show (#165) 
* use Base.show

* drop offending show method altogether
 2019-01-28 16:20:03 +02:00
schrimpf ab09bddcd8 change cache to work with figures (#158) 
* Changed read/write cache to use serialize/deserialize instead of
JLD2. JLD2 fails to save strings longer than 2^16 characters, which
can occur in the stringmime() of large figures.

* Added test for cache with figures and html output.
Updated REQUIRE & Project.toml to include Serialization instead of
FileIO and JLD2

* Added "Import Pkg;" to expected output of errors, so that tests pass.
 2019-01-03 15:40:32 +02:00
Matti Pastell bf57bf8a07
Use align for ```math blocks (#143) 
* Use align for ```math blocks
* Fix deprecation from inline parsing
* Update tests
 2018-08-23 08:22:08 +03:00
Matti Pastell 246f7eef62 Remove tmp directories from md2pdf output, closes #140 2018-08-17 13:12:37 +03:00
Matti Pastell 341edd3784 Allow custom fields in templates, closes #100 2018-07-27 14:39:53 +03:00
Matti Pastell 4cd0b92792 Fix pandoc support, add raw options to pandoc requires pandoc 2. Closes #132. 2018-07-27 14:18:33 +03:00
Matti Pastell 3fc3e3c6e0 Use :label consistently 2018-07-27 10:42:14 +03:00
Matti Pastell 5c803db6ae Merge branch 'dfk/pandoc-crossref' of https://github.com/kleinschmidt/Weave.jl into kleinschmidt-dfk/pandoc-crossref 2018-07-27 01:02:43 +03:00
Matti Pastell bd5e1d9a3b Eval requires in Main, add WeavePlots module 2018-07-26 21:29:46 +03:00
Matti Pastell 160017b6e8 Remove plot library hack and use Requires instead 2018-07-26 20:32:10 +03:00
Matti Pastell 44455a1fda Fix generic pdf support 2018-07-26 12:42:52 +03:00
Matti Pastell 973274bf22 Fix Plots support 2018-07-26 12:20:04 +03:00
Matti Pastell 93bb9ced2d Fix occursin bugs 2018-07-26 11:35:17 +03:00
Matti Pastell f90547cee6 Fix bug in Sandboxing, run code in sandbox module by default 2018-07-26 02:01:10 +03:00
Matti Pastell b136fa615d Fix header parsing, update example 2018-07-26 00:26:38 +03:00