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23737 Commits (0f4d93903a73c1d32d6e05f4d4dc9d426b3ed248)

Author SHA1 Message Date
Ricardo Wurmus c46e654f39
gnu: Add emacs-polymode. 
* gnu/packages/emacs.scm (emacs-polymode): New variable.
 2018-02-18 12:31:03 +01:00
Ricardo Wurmus 46fc9a7e0d
gnu: Pass "--target=i386-pc" when installing GRUB for legacy BIOS. 
* gnu/bootloader/grub.scm (install-grub): Add "--target=i386-pc" to the list
of arguments to "grub-install".

Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30311>.
 2018-02-18 12:28:56 +01:00
Ricardo Wurmus f6d259b4d9
gnu: emacs-slack: Update to 0-2.02ee1d73. 
* gnu/packages/emacs.scm (emacs-slack): Update to 0-2.02ee1d73.
 2018-02-18 12:28:56 +01:00
Efraim Flashner c9b7ed7de9
gnu: c-ares: Update to 1.14.0. 
* gnu/packages/adns.scm (c-ares): Update to 1.14.0.
[license]: Use https.
 2018-02-18 13:05:07 +02:00
Mark H Weaver 629daea981
gnu: linux-libre: Update to 4.15.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.4.
(%linux-libre-hash): Update hash.
 2018-02-17 23:57:21 -05:00
Mark H Weaver 4a9ea9750d
gnu: linux-libre@4.14: Update to 4.14.20. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.20.
(%linux-libre-4.14-hash): Update hash.
 2018-02-17 23:55:40 -05:00
Mark H Weaver 7b4a850c23
gnu: linux-libre@4.9: Update to 4.9.82. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.82.
 2018-02-17 23:55:02 -05:00
Mark H Weaver 1afd125beb
gnu: linux-libre@4.4: Update to 4.4.116. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.116.
 2018-02-17 23:54:27 -05:00
Danny Milosavljevic fdd400d82e
gnu: make-linux-libre: Use invoke. 
* gnu/packages/linux.scm (make-linux-libre): Use invoke.
 2018-02-17 23:48:33 -05:00
Chris Marusich 67f0c4228b
gnu: Update gnu-standards to 2018-02-18. 
* gnu/packages/gnu-doc.scm (gnu-standards) <version>: Update to 2018-02-18.
  (gnu-standards) <origin>: While we're here, use "gnu-standards-src" as the
  file-name, rather than the default, which is "cvs-checkout".
 2018-02-18 03:19:26 +01:00
Ludovic Courtès 3f3c0ab434
gnu: mailutils: Fix uninitialized memory bug. 
This was causing segfaults in the MH test suite when building with
glibc 2.26 on x86_64.

* gnu/packages/patches/mailutils-uninitialized-memory.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (mailutils)[source](patches, snippet): New
fields.
[native-inputs]: New field.
 2018-02-18 00:48:17 +01:00
Ludovic Courtès d65930708f
gnu: gcc@4.9: Fix libsanitizer compilation with glibc 2.26. 
* gnu/packages/patches/gcc-4.9-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.9)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-02-18 00:48:16 +01:00
Ludovic Courtès a9d4a9ad33
gnu: gvpe: Fix compilation against glibc 2.26. 
* gnu/packages/vpn.scm (gvpe)[source](modules, snippet): New fields.
 2018-02-18 00:48:16 +01:00
Ludovic Courtès bfb06e580e
gnu: shepherd: Add dependency on guile-readline. 
* gnu/packages/admin.scm (shepherd)[inputs]: Add GUILE-READLINE.
 2018-02-18 00:48:16 +01:00
Ricardo Wurmus ff9d1a2f0c
Merge branch 'master' into core-updates 2018-02-18 00:39:25 +01:00
Ricardo Wurmus a01d926f9d
gnu: geda-gaf: Disable two broken tests. 
* gnu/packages/engineering.scm (geda-gaf)[arguments]: Disable two failing
tests.
 2018-02-18 00:30:47 +01:00
Ricardo Wurmus 5f78ce490e
gnu: Add emacs-nov-el. 
* gnu/packages/emacs.scm (emacs-nov-el): New variable.
 2018-02-18 00:30:47 +01:00
Ricardo Wurmus 8d89921474
gnu: Add emacs-esxml. 
* gnu/packages/emacs.scm (emacs-esxml): New variable.
 2018-02-18 00:30:47 +01:00
Marius Bakke 6f6db0269f
gnu: python-hacking: Update to 1.0.0. 
* gnu/packages/openstack.scm (python-hacking): Update to 1.0.0.
[propagated-inputs]: Change PYTHON-FLAKE8 to PYTHON-FLAKE8-2.5.
* gnu/packages/python.scm (python-flake8-2.5, python2-flake8-2.5): New public
variables.
 2018-02-17 21:45:31 +01:00
Marius Bakke ca6197dd65
gnu: python-defusedxml: Update to 0.5.0. 
* gnu/packages/xml.scm (python-defusedxml): Update to 0.5.0.
 2018-02-17 20:59:11 +01:00
Marius Bakke 26176bee23
gnu: python-waitress: Update to 1.1.0. 
* gnu/packages/patches/python-waitress-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-waitress): Update to 1.1.0.
[source](patches): New field.
 2018-02-17 20:49:39 +01:00
Efraim Flashner a39aa68394
gnu: libffcall: Update to 2.1. 
* gnu/packages/libffcall.scm (libffcall): Update to 2.1.
 2018-02-17 21:20:31 +02:00
Marius Bakke 3ce4e265dd
gnu: btrfs-progs: Fix bash completions. 
This is a follow-up to commit 9a1c4a981b.  Bash
completions must have the same name as the executable.

* gnu/packages/linux.scm (btrfs-progs)[arguments]: Rename "btrfs-completion"
script to "btrfs".
 2018-02-17 16:15:43 +01:00
Marius Bakke 3971dcbf0e
gnu: zathura: Don't propagate girara in dependent packages. 
* gnu/packages/pdf.scm (zathura-cb, zathura-ps, zathura-djvu,
zathura-pdf-mupdf, zathura-pdf-poppler)[propagated-inputs]: Remove GIRARA.
 2018-02-17 16:15:43 +01:00
Marius Bakke 2416665ecb
gnu: zathura, girara: Use the test-only xorg variant for tests. 
* gnu/packages/gtk.scm (girara)[native-inputs]: Replace XORG-SERVER with
XORG-SERVER-1.19.3.
[arguments]: Add #:disallowed-references.
* gnu/packages/pdf.scm (zathura)[native-inputs, arguments]: Likewise.
 2018-02-17 16:15:43 +01:00
Marius Bakke f0eba502a1
gnu: zathura: Increase test timeouts. 
* gnu/packages/pdf.scm (zathura): Export CK_DEFAULT_TIMEOUT before running
tests.
 2018-02-17 16:15:43 +01:00
Marius Bakke 3e6b398a48
gnu: girara: Increase test timeouts. 
Fixes build failures on Hydra.  Reported by Mark H Weaver in
<https://lists.gnu.org/archive/html/guix-devel/2017-12/msg00391.html>.

* gnu/packages/gtk.scm (girara)[arguments]: Set CK_DEFAULT_TIMEOUT before
running tests.
 2018-02-17 16:15:43 +01:00
Ben Woodcroft bb3359ab8e
gnu: ruby-2.4.3: Update rubygems to 2.7.6. 
This fixes the security issues described at
https://www.ruby-lang.org/en/news/2018/02/17/multiple-vulnerabilities-in-
rubygems/

* gnu/packages/patches/ruby-rubygems-276-for-ruby24.patch: New file.
* gnu/packages/ruby.scm (ruby-2.4.3)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-02-18 00:48:50 +10:00
Ricardo Wurmus 1ecbd859a1
gnu: ghc-mtl: Remove ghc-transformers from inputs. 
* gnu/packages/haskell.scm (ghc-mtl)[arguments]: Explain why we need to allow
a newer version of the transformers package.
[inputs]: Remove ghc-transformers.
 2018-02-17 14:02:57 +01:00
Ricardo Wurmus 9729f9756c
gnu: ghc-mtl: Remove ghc-transformers from inputs. 
* gnu/packages/haskell.scm (ghc-mtl)[arguments]: Explain why we need to allow
a newer version of the transformers package.
[inputs]: Remove ghc-transformers.
 2018-02-17 14:01:15 +01:00
Ben Woodcroft 369eee8763
gnu: vsearch: Update to 2.7.1. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.1.
 2018-02-17 12:44:29 +10:00
Danny Milosavljevic 4e1efba42b
services: xorg: Import (ice-9 rdelim). 
* gnu/services/xorg.scm (xinitrc): Import (ice-9 rdelim).
 2018-02-17 02:48:00 +01:00
Marius Bakke c8f1a49f0e
gnu: git: Update to 2.16.2. 
* gnu/packages/version-control.scm (git): Update to 2.16.2.
 2018-02-16 22:13:38 +01:00
Marius Bakke 445929e038
gnu: glpk: Update to 4.65. 
* gnu/packages/maths.scm (glpk): Update to 4.65.
 2018-02-16 22:08:03 +01:00
Marius Bakke 294ae4d7f8
gnu: xf86-video-vesa: Update to 2.4.0. 
* gnu/packages/xorg.scm (xf86-video-vesa): Update to 2.4.0.
 2018-02-16 22:02:45 +01:00
Nicolas Goaziou fa7d8ea1a2
gnu: Add colobot. 
* gnu/packages/games.scm (colobot): New variable.
 2018-02-16 20:57:14 +01:00
Kei Kebreau 3d8cbdc40e
gnu: bigloo: Fix source hash. 
Fixes <https://bugs.gnu.org/30436>.

* gnu/packages/scheme.scm (bigloo)[source]: Fix hash.
 2018-02-16 14:42:34 -05:00
Mark H Weaver 150062f190
Merge branch 'master' into core-updates 2018-02-16 13:14:26 -05:00
Marius Bakke 54a93355c2
gnu: ruby-sqlite3: Adjust failing test. 
* gnu/packages/ruby.scm (ruby-sqlite3): Adjust test to work with SQLite 3.21.
 2018-02-16 19:09:03 +01:00
Danny Milosavljevic f6cccefed5
gnu: ghc: Make memory allocator decommit memory on Linux < 4.5. 
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
 2018-02-16 12:41:01 -05:00
David Thompson 6a3cf4e6c7
gnu: tiled: Update to 1.1.2. 
* gnu/packages/game-development.scm (tiled): Update to 1.1.2.
 2018-02-16 10:16:09 -05:00
Rutger Helling c2957cb7ec
gnu: mpv: Update to 0.28.2. 
* gnu/packages/video.scm (mpv): Update to 0.28.2.
 2018-02-16 13:09:22 +01:00
Tobias Geerinckx-Rice 8c078ddec4
gnu: perl-dbd-pg: Update to 3.7.4. 
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.7.4.
 2018-02-16 11:15:02 +01:00
Tobias Geerinckx-Rice 2d1c7a4e89
gnu: ristretto: Update to 0.8.2. 
* gnu/packages/xfce.scm (ristretto): Update to 0.8.2.
 2018-02-16 11:15:01 +01:00
Tobias Geerinckx-Rice 2b33c4d677
gnu: opusfile: Update to 0.10. 
* gnu/packages/xiph.scm (opusfile): Update to 0.10.
 2018-02-16 11:15:01 +01:00
Tobias Geerinckx-Rice 1b0ce451f4
gnu: erlang: Update phase style. 
* gnu/packages/erlang.scm (erlang)[arguments]: Substitute INVOKE for
SYSTEM*, don't use %OUTPUTS, and end phases with #t.
 2018-02-16 11:11:41 +01:00
Tobias Geerinckx-Rice 629c1947ea
gnu: erlang: Update to 20.2.3. 
* gnu/packages/erlang.scm (erlang): Update to 20.2.3.
 2018-02-16 11:11:41 +01:00
Tobias Geerinckx-Rice ce46dfeba5
gnu: gkrellm: Update to 2.3.10. 
* gnu/packages/gkrellm.scm (gkrellm): Update to 2.3.10.
[arguments]: Remove X11_LIBS override.
 2018-02-16 11:11:41 +01:00
Tobias Geerinckx-Rice 48bbe06edf
gnu: gnustep: Update dockapps home pages. 
* gnu/packages/gnustep.scm (wmbattery, wmclock, wmcpuload)[home-pages]:
Use new dockapps.net domain.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice bfe83d568c
gnu: gnustep: Update phase style. 
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Don't use %OUTPUT.
End phases with #t.
(wmbattery, wmclock)[arguments]: Substitute INVOKE for SYSTEM*.  End
phases with #t.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice 9a0a4a95f0
gnu: wmcpuload: Update to 1.1.1. 
* gnu/packages/gnustep.scm (wmcpuload): Update to 1.1.1.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice 93710d861f
gnu: wmbattery: Update to 2.51. 
* gnu/packages/gnustep.scm (wmbattery): Update to 2.51.
[source]: Remove upstreamed bugfix snippet.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice 340978d7b0
gnu: Use HTTPS for supported nongnu.org home pages. 
* gnu/packages/acl.scm (acl)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (dmidecode)[home-page]: Likewise.
* gnu/packages/attr.scm (attr)[home-page]: Likewise.
* gnu/packages/audio.scm (lash)[home-page]: Likewise.
* gnu/packages/avr.scm (avr-libc)[home-page]: Likewise.
* gnu/packages/backup.scm (rdiff-backup, libchop)[home-page]: Likewise.
* gnu/packages/compression.scm (fastjar, lzip, lziprecover, atool)
(lunzip, clzip, lzlib, plzip)[home-page]: Likewise.
* gnu/packages/emacs.scm (geiser, bbdb, m17n-lib, m17n-lib)[home-page]:
Likewise.
* gnu/packages/flashing-tools.scm (avrdude)[home-page]: Likewise.
* gnu/packages/fontutils.scm (libotf)[home-page]: Likewise.
* gnu/packages/game-development.scm (gzochi)[home-page]: Likewise.
* gnu/packages/games.scm (enigma)[home-page]: Likewise.
* gnu/packages/gsasl.scm (libntlm)[home-page]: Likewise.
* gnu/packages/gtk.scm (guile-cairo)[home-page]: Likewise.
* gnu/packages/guile.scm (guile-reader, guile-lib, guile-json)
(guile-redis, g-wrap)[home-page]: Likewise.
* gnu/packages/libunwind.scm (libunwind)[home-page]: Likewise.
* gnu/packages/lout.scm (lout)[home-page]: Likewise.
* gnu/packages/mpd.scm (sonata)[home-page]: Likewise.
* gnu/packages/networking.scm (quagga)[home-page]: Likewise.
* gnu/packages/ratpoison.scm (ratpoison)[home-page]: Likewise.
* gnu/packages/skribilo.scm (skribilo)[home-page]: Likewise.
* gnu/packages/telephony.scm (exosip)[home-page]: Likewise.
* gnu/packages/texinfo.scm (texi2html)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xbindkeys)[home-page]: Likewise.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice 10cac630c2
gnu: plzip: Update to 1.7. 
* gnu/packages/compression.scm (plzip): Update to 1.7.
 2018-02-16 11:11:39 +01:00
Tobias Geerinckx-Rice d1c1d835f6
gnu: lzlib: Update to 1.10. 
* gnu/packages/compression.scm (lzlib): Update to 1.10.
 2018-02-16 11:11:39 +01:00
Tobias Geerinckx-Rice d6d1643b2e
gnu: clzip: Update to 1.10. 
* gnu/packages/compression.scm (clzip): Update to 1.10.
 2018-02-16 11:11:39 +01:00
Tobias Geerinckx-Rice 910992e46d
gnu: lziprecover: Update to 1.20. 
* gnu/packages/compression.scm (lziprecover): Update to 1.20.
 2018-02-16 11:11:38 +01:00
Tobias Geerinckx-Rice bf86770950
gnu: pbzip2: Update to 1.1.13. 
* gnu/packages/compression.scm (pbzip2): Update to 1.1.13.
 2018-02-16 11:11:38 +01:00
Tobias Geerinckx-Rice 6f465a5103
gnu: lzop: Use HTTPS home page. 
* gnu/packages/compression.scm (lzop)[home-page]: Use HTTPS.
 2018-02-16 11:11:38 +01:00
Tobias Geerinckx-Rice 89d159fef8
gnu: lzop: Update to 1.04. 
* gnu/packages/compression.scm (lzop): Update to 1.04.
 2018-02-16 11:11:38 +01:00
Ludovic Courtès 469069b6e8
gnu: ldc: Increase 'max-silent-time'. 
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/ldc.scm (ldc-bootstrap)[properties]: New field.
 2018-02-16 11:10:12 +01:00
Leo Famulari 0840678342
gnu: quagga: Update to 1.2.3 [security fixes]. 
See the advisories at
<https://git.savannah.gnu.org/cgit/quagga.git/tree/doc/security?h=quagga-1.2.3>
for more information about the security-related bugs fixed in this
release.

* gnu/packages/networking.scm (quagga): Update to 1.2.3.
 2018-02-15 21:47:07 -05:00
David Thompson 6ca86ed7a3
gnu: python-botocore: Update to 1.8.43. 
* gnu/packages/python.scm (python-botocore): Update to 1.8.43.
 2018-02-15 19:22:15 -05:00
Hartmut Goebel b907b36419
gnu: Add kholidays. 
* gnu/packages/kde.scm(kholidays): New variable.
 2018-02-15 23:26:21 +01:00
Alex Vong f3bbe0291b
gnu: java-fasterxml-jackson-dataformat-xml: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-xml): Update
to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 1f2be88f26
gnu: java-fasterxml-jackson-dataformat-yaml: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-yaml): Update
to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 07207211df
gnu: java-fasterxml-jackson-modules-base-jaxb: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-modules-base-jaxb):
Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 3c1edff5ca
gnu: java-fasterxml-jackson-databind: Update to 2.9.4 [fixes CVE-{2017-17485, 2018-5968}]. 
* gnu/packages/java.scm (java-fasterxml-jackson-databind): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 38a0fc384a
gnu: java-fasterxml-jackson-core: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-core): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:26 -05:00
Alex Vong 93dceea45e
gnu: java-fasterxml-jackson-annotations: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-annotations): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:26 -05:00
Ben Woodcroft 5ebc8e7f41
gnu: diamond: Update to 0.9.18. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.18.
 2018-02-16 08:13:24 +10:00
Pjotr Prins aabcb6e57c
gnu: python-elasticsearch: Update to 6.1.1. 
* gnu/packages/python-web.scm (python-elasticsearch, python2-elasticsearch):
Update to 6.1.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 16:57:12 -05:00
Hartmut Goebel 34581f68c0
gnu: Add bpython. 
* gnu/packages/python.scm (bpython, bpython2): New variables.
 2018-02-15 21:44:07 +01:00
Hartmut Goebel e79a8424ca
gnu: Add python-curtsies. 
* gnu/packages/terminals.scm (python-curtsies, python2-curtsies): New
  variables.
 2018-02-15 21:44:06 +01:00
Hartmut Goebel 573450e60c
gnu: Add python-blessings. 
* gnu/packages/terminals.scm (python-blessings, python2-blessings): New
  variables.
 2018-02-15 21:44:06 +01:00
Hartmut Goebel 46ddcf4a29
gnu: Add python-pyte. 
* gnu/packages/terminals.scm (python-pyte, python2-pyte): New variables.
 2018-02-15 21:44:06 +01:00
Leo Famulari 3026de3fce
gnu: irssi: Update to 1.1.1 [fixes CVE-2018-{7050,7051,7052,7053,7054}]. 
* gnu/packages/irc.scm (irssi): Update to 1.1.1.
 2018-02-15 14:41:26 -05:00
Oleg Pykhalov 5b23829299
gnu: Add epipe. 
* gnu/packages/emacs.scm (epipe): New public variable.
 2018-02-15 20:45:45 +03:00
Danny Milosavljevic a124e4258a
gnu: ghc: Make memory allocator decommit memory on Linux < 4.5. 
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
 2018-02-15 17:27:50 +01:00
Ricardo Wurmus 4aa0a1df2d
gnu: java-jeromq: Update to 0.4.3. 
* gnu/packages/java.scm (java-jeromq): Update to 0.4.3.
[arguments]: Disable DealerSpecTest.
 2018-02-15 17:19:09 +01:00
Ricardo Wurmus 36b39d1618
gnu: java-testng: Update to 6.14.2. 
* gnu/packages/java.scm (java-testng): Update to 6.14.2.
[arguments]: Delete failing tests and those requiring groovy.
[native-inputs]: Add java-mockito-1.
 2018-02-15 17:19:06 +01:00
Ricardo Wurmus 152d30c346
gnu: Add python-loompy. 
* gnu/packages/bioinformatics.scm (python-loompy): New variable.
 2018-02-15 17:19:00 +01:00
Ricardo Wurmus 3082de04c2
gnu: Add r-dropbead. 
* gnu/packages/bioinformatics.scm (r-dropbead): New variable.
 2018-02-15 17:18:54 +01:00
Ricardo Wurmus 05f7296012
gnu: Add r-delayedmatrixstats. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable.
 2018-02-15 17:18:52 +01:00
Ricardo Wurmus fc162dbaec
gnu: Add python-typing. 
* gnu/packages/python.scm (python-typing, python2-typing): New variables.
 2018-02-15 17:18:50 +01:00
Ricardo Wurmus 130d290e29
gnu: Add python-future-fstrings. 
* gnu/packages/python.scm (python-future-fstrings): New variable.
 2018-02-15 17:18:46 +01:00
Ricardo Wurmus 8b2ad13b19
gnu: Add python-tokenize-rt. 
* gnu/packages/python.scm (python-tokenize-rt): New variable.
 2018-02-15 17:18:43 +01:00
Ricardo Wurmus e035589482
gnu: augeas: Update to 1.10.1. 
* gnu/packages/augeas.scm (augeas): Update to 1.10.1.
 2018-02-15 17:17:19 +01:00
Ludovic Courtès ec0f3d0a5b
gnu: ifdtool: Fix Texinfo markup. 
* gnu/packages/flashing-tools.scm (ifdtool)[description]: Fix Texinfo
markup.
 2018-02-15 16:35:39 +01:00
Danny Milosavljevic 8e60743d8b
gnu: me-cleaner: Update synopsis. 
* gnu/packages/flashing-tools.scm (me-cleaner)[synopsis]: Modify.
 2018-02-15 15:01:39 +01:00
Danny Milosavljevic 7e0a6fac0b
services: mingetty: Move tty optionality to agetty. 
Follow-up to 5a9902c8ac.

* gnu/services/base.scm (mingetty-shepherd-service): Move tty optionality check to...
(agetty-shepherd-service): ...here.
 2018-02-15 12:32:18 +01:00
Danny Milosavljevic 0297a160a0
gnu: Add me-cleaner. 
* gnu/packages/flashing-tools.scm (me-cleaner): New variable.
 2018-02-15 12:05:25 +01:00
Danny Milosavljevic 9721c0b6ef
gnu: Add intelmetool. 
* gnu/packages/flashing-tools.scm (intelmetool): New variable.
 2018-02-15 12:05:24 +01:00
Danny Milosavljevic 501e184716
gnu: Add ifdtool. 
* gnu/packages/flashing-tools.scm (ifdtool): New variable.
 2018-02-15 12:05:24 +01:00
Danny Milosavljevic 5a9902c8ac
services: agetty: Add agetty instance to base services. Make its tty optional. 
* gnu/services/base.scm (%base-services): Instantiate agetty-service.
(default-serial-port): New variable.
(agetty-shepherd-service): Make tty optional, default to the above.
* doc/guix.texi (agetty-configuration): Update "tty" documentation.
* gnu/system/install.scm (agetty-default-service): Delete variable.
(embedded-installation-os): Remove agetty-default-service instance.
Add "console" kernel-argument.
 2018-02-15 12:05:21 +01:00
Ludovic Courtès 2b870303e7
gnu: cuirass: Update to 4ab2f2c. 
Previous revision had (web server fiberized) installed in the wrong
place, and would thus fail to start.

* gnu/packages/ci.scm (cuirass): Update to 4ab2f2c.
 2018-02-15 10:32:20 +01:00
Pierre Langlois 6ca15c9ef6
gnu: crypto++: Update to 6.0.0. 
* gnu/packages/crypto.scm (crypto++): Update to 6.0.0.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-15 10:23:42 +01:00
Ludovic Courtès 9859b5c190
gnu: nss-mdns: Update to 0.12.0. 
* gnu/packages/avahi.scm (nss-mdns): Update to 0.12 + patch.
(nss-mdns-0.10.0): Remove.
* gnu/services/avahi.scm (avahi-service-type): Use NSS-MDNS again.
 2018-02-15 10:16:00 +01:00
Ludovic Courtès d1688e6ad4
gnu: cuirass: Update to 8080c17. 
* gnu/packages/ci.scm (cuirass): Update to 8080c17.
[inputs]: Add GUILE-FIBERS.
[arguments] <wrap-program>: Add Fibers to the search path in the
wrapper.
 2018-02-14 23:44:28 +01:00
Ludovic Courtès 499e499b8e
gnu: guile-sqlite3: Update to 10c13a7. 
* gnu/packages/guile.scm (guile-sqlite3): Update to 10c13a7.
 2018-02-14 23:38:22 +01:00
Julien Lepiller 08da664d10
gnu: Add cat-avatar-generator-service. 
* gnu/services/web.scm (cat-avatar-generator-service): New variable.
* doc/guix.text (Web Services): Document it.
 2018-02-14 23:18:41 +01:00
Julien Lepiller 3bedac5057
gnu: Add cat-avatar-generator. 
* gnu/packages/web.scm (cat-avatar-generator): New variable.
 2018-02-14 23:15:16 +01:00
Tobias Geerinckx-Rice f2ba6fc8bb
gnu: yadifa: Update to 2.3.8. 
* gnu/packages/dns.scm (yadifa): Update to 2.3.8.
 2018-02-14 20:39:53 +01:00
Marius Bakke 1bd08a268a
gnu: strace: Update to 4.21. 
* gnu/packages/linux.scm (strace): Update to 4.21.
[source](uri): Releases are now served from GitHub.
 2018-02-14 20:23:19 +01:00
Marius Bakke 1a46a6d02d
gnu: fio: Update to 3.4. 
* gnu/packages/benchmark.scm (fio): Update to 3.4.
 2018-02-14 20:23:19 +01:00
Oleg Pykhalov ac07b94ab5
gnu: Add emacs-scratch-el. 
* gnu/packages/emacs.scm (emacs-scratch-el): New public variable.
 2018-02-14 15:54:26 +03:00
Mark H Weaver 5fe9ba59ba
gnu: magit: Do not set 'magit-git-executable' to absolute file name. 
Fixes <https://bugs.gnu.org/30434>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/emacs.scm (magit)[arguments]: Do not modify the default value
of 'magit-git-executable'.  Remove "#:modules" and "#:imported-modules".
 2018-02-14 03:48:20 -05:00
Mark H Weaver 84fe44201b
gnu: magit: Do not set 'magit-git-executable' to absolute file name. 
Fixes <https://bugs.gnu.org/30434>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/emacs.scm (magit)[arguments]: Do not modify the default value
of 'magit-git-executable'.  Remove "#:modules" and "#:imported-modules".
 2018-02-14 03:42:07 -05:00
Mark H Weaver 02843215d8
gnu: shepherd: 'herd status' now sorts the result. 
Add a patch by Ludovic Courtès <ludo@gnu.org> from the upstream
shepherd repository to partially fix <https://bugs.gnu.org/30299>.

* gnu/packages/patches/shepherd-herd-status-sorted.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Add patch.
 2018-02-14 03:42:02 -05:00
Mark H Weaver 932c98326d
Merge branch 'master' into core-updates 2018-02-14 03:40:08 -05:00
Rutger Helling 870541d6a7
gnu: mpv: Enable Vulkan support. 
* gnu/packages/video.scm (mpv)[inputs]: Add shaderc and vulkan-icd-loader.
 2018-02-14 08:18:58 +01:00
Rutger Helling 5b69baf0ad
gnu: Add shaderc. 
* gnu/packages/vulkan.scm (shaderc): New variable.
 2018-02-14 08:18:58 +01:00
Mark H Weaver c5971d473d
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
 2018-02-13 19:53:35 -05:00
Marius Bakke 4af55f7657
gnu: freeipmi: Update to 1.6.1. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.1.
 2018-02-13 23:52:39 +01:00
Danny Milosavljevic a32f9b59ab
system: make-u-boot-package: Install configuration file. 
* gnu/packages/bootloaders.scm (make-u-boot-package): Install configuration
file.
 2018-02-13 23:23:25 +01:00
Marius Bakke b2b2ba40c3
gnu: efivar: Update to 34. 
* gnu/packages/linux.scm (efivar): Update to 34.
[arguments]: Add CC_FOR_BUILD=gcc to #:make-flags.
 2018-02-13 23:02:03 +01:00
Marius Bakke 8b114e5bd9
gnu: feh: Update to 2.23.2. 
* gnu/packages/image-viewers.scm (feh): Update to 2.23.2.
 2018-02-13 23:02:03 +01:00
Ben Woodcroft 119c09c219
gnu: vsearch: Update to 2.7.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.0.
 2018-02-14 07:43:19 +10:00
Efraim Flashner 34a7b7d713
gnu: libdvdnav@4: Remove variable. 
* gnu/packages/video.scm (libdvdnav@4): Remove variable.
 2018-02-13 22:56:51 +02:00
Efraim Flashner 0976ea38b1
gnu: libdvdnav: Update to 6.0.0. 
* gnu/packages/video.scm (libdvdnav): Update to 6.0.0.
 2018-02-13 22:56:50 +02:00
Efraim Flashner 3c9deb0b11
gnu: libdvdread: Update to 6.0.0. 
* gnu/packages/video.scm (libdvdread): Update to 6.0.0.
 2018-02-13 22:56:50 +02:00
Efraim Flashner 975c715a41
gnu: x265: Update to 2.6. 
* gnu/packages/video.scm (x265): Update to 2.6.
 2018-02-13 22:56:48 +02:00
Efraim Flashner 1373ce7ce0
gnu: ffmpeg: Update to 3.4.2. 
* gnu/packages/video.scm (ffmpeg): Update to 3.4.2.
 2018-02-13 22:56:44 +02:00
Leo Famulari 5c4fd60416
gnu: python-icalendar: Update to 4.0.1. 
* gnu/packages/python.scm (python-icalendar): Update to 4.0.1.
 2018-02-13 14:33:22 -05:00
Mark H Weaver 288b8fd5e9
Merge branch 'master' into core-updates 2018-02-13 13:17:15 -05:00
Mark H Weaver acff6aa004
gnu: linux-libre: Update to 4.15.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.3.
(%linux-libre-hash): Update hash.
 2018-02-13 13:08:30 -05:00
Mark H Weaver 146be91dda
gnu: linux-libre@4.14: Update to 4.14.19. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.19.
(%linux-libre-4.14-hash): Update hash.
 2018-02-13 13:07:48 -05:00
Mark H Weaver 47b731b372
gnu: linux-libre@4.9: Update to 4.9.81. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.81.
 2018-02-13 13:06:28 -05:00
Ricardo Wurmus 117c83bdc7
gnu: r-htmltable: Update to 1.11.2. 
* gnu/packages/web.scm (r-htmltable): Update to 1.11.2.
[propagated-inputs]: Remove r-dplyr and r-tidyr.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 7d358f33d8
gnu: r-htmlwidgets: Update to 1.0. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 1ee14481d2
gnu: r-lubridate: Update to 1.7.2. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.2.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 4ff5fc6fa0
gnu: r-ranger: Update to 0.9.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.9.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus f9ee1741f9
gnu: r-lme4: Update to 1.1-15. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-15.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 45ec40818b
gnu: r-quantreg: Update to 5.35. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.35.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 725673ad6f
gnu: r-rcppeigen: Update to 0.3.3.4.0. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.4.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus c71cd58240
gnu: r-pbapply: Update to 1.3-4. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-4.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus f66a34fcc4
gnu: r-vgam: Update to 1.0-5. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-5.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 09da3d4403
gnu: r-fpc: Update to 2.1-11. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 23fb604725
gnu: r-pcapp: Update to 1.9-73. 
* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-73.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus fe394eac82
gnu: r-zoo: Update to 1.8-1. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-1.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus b216fdf21f
gnu: r-hmisc: Update to 4.1-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.1-1.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus c4f148ab0a
gnu: r-tidyr: Update to 0.8.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus be8db0a0ab
gnu: r-viridislite: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.3.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 9604af890d
gnu: r-viridis: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.5.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a46c71924c
gnu: r-matrixstats: Update to 0.53.1. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.53.1.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus e04b71a83b
gnu: r-mvtnorm: Update to 1.0-7. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-7.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus f7d7dd41f1
gnu: r-r-rsp: Update to 0.42.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.42.0.
[propagated-inputs]: Add r-digest.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 2cd6bb5da4
gnu: r-r-cache: Update to 0.13.0. 
* gnu/packages/statistics.scm (r-r-cache): Update to 0.13.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 48237fde89
gnu: r-bigmemory: Update to 4.5.33. 
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.33.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a566b3f9e6
gnu: r-synchronicity: Update to 1.3.2. 
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.2.
[propagated-inputs]: Add r-uuid.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 8ff6853c13
gnu: r-irlba: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.2.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a63117c8ae
gnu: r-dt: Update to 0.4. 
* gnu/packages/statistics.scm (r-dt): Update to 0.4.
[propagated-inputs]: Add r-crosstalk.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 1324f85b43
gnu: r-rprojroot: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-2.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus edab1c049b
gnu: r-hms: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-hms): Update to 0.4.1.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 80f72101b4
gnu: r-withr: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.1.
[propagated-inputs]: Remove r-lattice.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus ecba783c29
gnu: r-git2r: Update to 0.21.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.21.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 9fb6e62ef5
gnu: r-openssl: Update to 1.0. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 78e03a761c
gnu: r-xml2: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.2.0.
[native-inputs]: Add pkg-config.
[propagated-inputs]: Remove r-bh.
[inputs]: Add zlib.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 2afbaab56c
gnu: r-chron: Update to 2.3-52. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-52.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 172b63e436
gnu: r-dbplyr: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.0.
[propagated-inputs]: Add r-tidyselect.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 59b62f197d
gnu: r-tibble: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.4.2.
[propagated-inputs]: Add r-cli, r-crayon, and r-pillar; remove r-rcpp.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 7387d35228
gnu: r-rlang: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.6.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus c36ac74005
gnu: r-microbenchmark: Update to 1.4-4. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-4.
[propagated-inputs]: Remove r-ggplot2.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus ab3330e174
gnu: r-knitr: Update to 1.19. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.19.
[propagated-inputs]: Remove r-digest.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus d222070ad4
gnu: r-estimability: Update to 1.3. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.3.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 71d2f03be3
gnu: r-digest: Update to 0.6.15. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.15.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus ff1197c86e
gnu: r-rpart: Update to 4.1-12. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-12.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 6aa4be9c3c
gnu: r-mgcv: Update to 1.8-23. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-23.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 4c9264c1b9
gnu: r-mass: Update to 7.3-48. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-48.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 97bf74076c
gnu: r-gprofiler: Update to 0.6.3. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.3.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 169942368f
gnu: r-ensembldb: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.1.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 34d077b8bc
gnu: r-gage: Update to 2.28.2. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.28.2.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus f5f9442703
gnu: r-keggrest: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.18.1.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 26e3e28cc9
gnu: r-seurat: Update to 2.2.0. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.0.
[propagated-inputs]: Remove r-ggjoy; add r-rcppeigen and r-ggridges.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 53f0dea9d7
gnu: r-msnbase: Update to 2.4.2. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.2.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus b1f2753627
gnu: r-methylkit: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.1.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 5ef76bc28c
gnu: r-gkmsvm: Update to 0.79.0. 
* gnu/packages/bioinformatics.scm (r-gkmsvm): Update to 0.79.0.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 0b24dc95b5
gnu: r-wgcna: Update to 1.62. 
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.62.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus e1129446ec
gnu: r-genomation: Update to 1.11.3. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.11.3.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 0b18856532
gnu: r-genomicfeatures: Update to 1.30.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.3.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 99b3236e65
gnu: r-rtracklayer: Update to 1.38.3. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.3.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus c37b361e44
gnu: r-summarizedexperiment: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.8.1.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 373430672d
gnu: r-biomart: Update to 2.34.2. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.2.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 024f19c68b
gnu: r-genomicranges: Update to 1.30.1. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.1.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 0674657908
gnu: r-limma: Update to 3.34.8. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.8.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 5fb1fee67b
gnu: r-variantannotation: Update to 1.24.5. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.5.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus d22abe1e5d
gnu: r-edger: Update to 3.20.8. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.8.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 66ae706c24
gnu: r-bookdown: Update to 0.6. 
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.6.
[propagated-inputs]: Add r-xfun and ghc-pandoc.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 2e9da3390c
gnu: r-vegan: Update to 2.4-6. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-6.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 0f001b3c5a
gnu: r-drr: Update to 0.0.3. 
* gnu/packages/cran.scm (r-drr): Update to 0.0.3.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 92e4534ca8
gnu: r-lava: Update to 1.6. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.
[propagated-inputs]: Add r-squarem.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 093acd0de1
gnu: r-sp: Update to 1.2-7. 
* gnu/packages/cran.scm (r-sp): Update to 1.2-7.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus de1c0332d9
gnu: r-proxy: Update to 0.4-21. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-21.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus e30b878ec8
gnu: r-hexbin: Update to 1.27.2. 
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.2.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 64fe220cbe
gnu: r-dendextend: Update to 1.7.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.7.0.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus cb471b7eaa
gnu: r-ddalpha: Update to 1.3.1.1. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.1.1.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 1d13426bed
gnu: r-recipes: Update to 0.1.2. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.2.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 637584253f
gnu: r-pracma: Update to 2.1.4. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 1c7919251a
gnu: Add r-uuid. 
* gnu/packages/cran.scm (r-uuid): New variable.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus c555ccabcf
gnu: Add r-pillar. 
* gnu/packages/cran.scm (r-pillar): New variable.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus f244296822
gnu: Add r-utf8. 
* gnu/packages/cran.scm (r-utf8): New variable.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus c5f033e0f6
gnu: Add r-squarem. 
* gnu/packages/cran.scm (r-squarem): New variable.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus fe5b889365
gnu: r-shape: Update to 1.4.4. 
* gnu/packages/cran.scm (r-shape): Update to 1.4.4.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 33d8699da5
gnu: r-rcpp: Update to 0.12.15. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.15.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus f6d2b45ca8
gnu: Add r-xfun. 
* gnu/packages/cran.scm (r-xfun): New variable.
 2018-02-13 16:18:41 +01:00
Leo Famulari 77737e0354
gnu: unzip: Mitigate CVE-2018-1000035. 
* gnu/packages/compression.scm (unzip)[replacement]: New field.
(unzip/fixed): New variable.
 2018-02-13 09:51:07 -05:00
Ricardo Wurmus ad5de226e7
gnu: Add ghc-megaparsec. 
* gnu/packages/haskell.scm (ghc-megaparsec): New variable.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus aeecabd43c
gnu: Add ghc-parser-combinators. 
* gnu/packages/haskell.scm (ghc-parser-combinators): New variable.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus f941a52a14
gnu: Add ghc-text-binary. 
* gnu/packages/haskell.scm (ghc-text-binary): New variable.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 183d1b1aaf
gnu: ghc-trifecta: Update to 1.7.1.1. 
* gnu/packages/haskell.scm (ghc-trifecta): Update to 1.7.1.1.
[inputs]: Add ghc-doctest.
[native-inputs]: Add cabal-doctest.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 2815963b8d
gnu: ghc-reducers: Update to 3.12.2. 
* gnu/packages/haskell.scm (ghc-reducers): Update to 3.12.2.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 67e86e58e0
gnu: ghc-directory: Add note. 
* gnu/packages/haskell.scm (ghc-directory): Add comment not to use this
package as an input.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 0498d1689d
gnu: darcs: Update to 2.12.5. 
* gnu/packages/version-control.scm (darcs): Update to 2.12.5.
[arguments]: Relax version constraint on shelly.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 97bfe0d759
gnu: darcs: Remove ghc-directory from inputs. 
* gnu/packages/version-control.scm (darcs)[inputs]: Remove ghc-directory.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 4b1f2166fe
gnu: ghc-graphviz: Fix build with newer QuickCheck. 
* gnu/packages/haskell.scm (ghc-graphviz)[arguments]: Allow building with
newer QuickCheck.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus f25c95d384
gnu: ghc-tar: Disable tests. 
* gnu/packages/haskell.scm (ghc-tar)[arguments]: Disable tests.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 1b58d289fd
gnu: ghc-system-filepath: Update to 0.4.14. 
* gnu/packages/haskell.scm (ghc-system-filepath): Update to 0.4.14.
[arguments]: Disable tests.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus da76c6de87
gnu: darcs: Remove ghc-process from inputs. 
* gnu/packages/version-control.scm (darcs)[inputs]: Remove ghc-process.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 831cb41906
gnu: ghc-hslogger: Remove ghc-process from inputs. 
* gnu/packages/haskell.scm (ghc-hslogger)[inputs]: Remove ghc-process.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 64f597a611
gnu: ghc-process: Update to 1.6.3.0. 
* gnu/packages/haskell.scm (ghc-process): Update to 1.6.3.0.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 973075a091
gnu: ghc-haskeline: Update to 0.7.4.2. 
* gnu/packages/haskell.scm (ghc-haskeline): Update to 0.7.4.2.
[inputs]: Add ghc-stm.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus 54afb52e1f
gnu: ghc-fgl-arbitrary: Fix build with newer QuickCheck. 
* gnu/packages/haskell.scm (ghc-fgl-arbitrary)[arguments]: Allow building with
newer QuickCheck.
 2018-02-13 13:37:41 +01:00
Ricardo Wurmus c0a541cba8
gnu: ghc-fgl: Fix build with newer QuickCheck. 
* gnu/packages/haskell.scm (ghc-fgl)[arguments]: Allow building with newer
QuickCheck.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus a49bb332a1
gnu: ghc-pandoc-citeproc: Update to 0.12.2.5. 
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.12.2.5.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 1ddcb5e300
gnu: ghc-hs-bibutils: Update to 6.2.0.1. 
* gnu/packages/haskell.scm (ghc-hs-bibutils): Update to 6.2.0.1.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 1afa5abbe8
gnu: ghc-pandoc: Update to 2.0.6. 
* gnu/packages/haskell.scm (ghc-pandoc): Update to 2.0.6.
[inputs]: Add ghc-aeson-pretty, ghc-cmark-gfm, ghc-doctemplates, ghc-glob,
ghc-hslua-module-text, ghc-old-locale, ghc-skylighting, and ghc-split; remove
ghc-ansi-terminal, ghc-cmark, ghc-extensible-exceptions, ghc-filemanip,
ghc-highlighting-kate, and ghc-old-time.
[native-inputs]: Remove ghc-test-framework, ghc-test-framework-hunit, and
ghc-test-framework-quickcheck2; add ghc-tasty, ghc-tasty-golden,
ghc-tasty-hunit, and ghc-tasty-quickcheck.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 009d0f6d74
gnu: ghc-monad-control: Update to 1.0.1.0. 
* gnu/packages/haskell.scm (ghc-monad-control): Update to 1.0.1.0.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 7c86efe776
gnu: ghc-optparse-applicative: Update to 0.13.0.0. 
* gnu/packages/haskell.scm (ghc-optparse-applicative): Update to 0.13.0.0.
[arguments]: Disable tests.
[native-inputs]: Add ghc-quickcheck.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus e41fad216d
gnu: ghc-connection: Update to 0.2.6. 
* gnu/packages/haskell.scm (ghc-connection): Update to 0.2.6.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 15009c14ed
gnu: ghc-socks: Update to 0.5.5. 
* gnu/packages/haskell.scm (ghc-socks): Update to 0.5.5.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 3a4181dfc0
gnu: ghc-hourglass: Update to 0.2.10. 
* gnu/packages/haskell.scm (ghc-hourglass): Update to 0.2.10.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 1e521705bf
gnu: ghc-mockery: Update to 0.3.3. 
* gnu/packages/haskell.scm (ghc-mockery): Update to 0.3.3.
[inputs]: Add ghc-base-compat.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 3869735729
gnu: ghc-logging-facade: Update to 0.1.1. 
* gnu/packages/haskell.scm (ghc-logging-facade): Update to 0.1.1.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 9e21b4a8b8
gnu: ghc-th-reify-many: Update to 0.1.6. 
* gnu/packages/haskell.scm (ghc-th-reify-many): Update to 0.1.6.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 165e5f6ef5
gnu: ghc-th-expand-syns: Update to 0.4.0.0. 
* gnu/packages/haskell.scm (ghc-th-expand-syns): Update to 0.4.0.0.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 416092e7dd
gnu: ghc-semigroupoids: Update to 5.1. 
* gnu/packages/haskell.scm (ghc-semigroupoids): Update to 5.1.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 38646a6272
gnu: ghc-lens: Update to 4.15.4. 
* gnu/packages/haskell.scm (ghc-lens): Update to 4.15.4.
[arguments]: Enable tests.
[inputs]: Add ghc-doctest-0.13 and ghc-call-stack.
[native-inputs]: Add cabal-doctest, ghc-hunit, ghc-test-framework,
ghc-test-framework-hunit, ghc-test-framework-th,
ghc-test-framework-quickcheck2, and ghc-quickcheck.

squash! gnu: ghc-lens: Update to 4.15.4.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 83d436198d
gnu: Add ghc-doctest-0.13. 
* gnu/packages/haskell.scm (ghc-doctest-0.13): New variable.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus 32ddba787a
gnu: Add ghc-call-stack. 
* gnu/packages/haskell.scm (ghc-call-stack): New variable.
 2018-02-13 13:37:40 +01:00
Ricardo Wurmus a54b744126
gnu: Add ghc-nanospec. 
* gnu/packages/haskell-check.scm (ghc-nanospec): New variable.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 29a2638654
gnu: ghc-xml-conduit: Update to 1.7.1.2 
* gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.7.1.2.
[inputs]: Remove ghc-blaze-builder and ghc-data-default; add
ghc-data-default-class.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 1e4a612263
gnu: ghc-conduit-extra: Update to 1.1.13.3. 
* gnu/packages/haskell.scm (ghc-conduit-extra): Update to 1.1.13.3.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 95260eb26d
gnu: ghc-lens: Update to 4.14. 
* gnu/packages/haskell.scm (ghc-lens): Update to 4.14.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 77c1e8b5b9
gnu: ghc-statevar: Update to 1.1.0.4. 
* gnu/packages/haskell.scm (ghc-statevar): Update to 1.1.0.4.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 88da6cdb1d
gnu: ghc-kan-extensions: Update to 5.0.1. 
* gnu/packages/haskell.scm (ghc-kan-extensions): Update to 5.0.1.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 95796f81a6
gnu: ghc-aeson-pretty: Update to 0.8.5. 
* gnu/packages/haskell-web.scm (ghc-aeson-pretty): Update to 0.8.5.
[inputs]: Add ghc-base-compat and ghc-scientific.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 64b5cce93a
gnu: ghc-blaze-html: Update to 0.9.0.1. 
* gnu/packages/haskell-web.scm (ghc-blaze-html): Update to 0.9.0.1.
[arguments]: Enable tests, allow building with newer QuickCheck.
[native-inputs]: Add ghc-hunit, ghc-quickcheck, ghc-test-framework,
ghc-test-framework-hunit, and ghc-test-framework-quickcheck2.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 969d0c6454
gnu: ghc-blaze-markup: Update to 0.8.2.0. 
* gnu/packages/haskell.scm (ghc-blaze-markup): Update to 0.8.2.0.
[arguments]: Enable tests.
[native-inputs]: Add ghc-hunit, ghc-quickcheck, ghc-tasty, ghc-tasty-hunit,
and ghc-tasty-quickcheck.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 14e9a39717
gnu: Add ghc-skylighting. 
* gnu/packages/haskell.scm (ghc-skylighting): New variable.
 2018-02-13 13:37:39 +01:00
Ricardo Wurmus 8045d84d72
gnu: Add ghc-hslua-module-text. 
* gnu/packages/haskell.scm (ghc-hslua-module-text): New variable.
 2018-02-13 13:37:39 +01:00