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27129 Commits (1935b8d56a4c739f468af973ac9057463c18d1bc)

Author SHA1 Message Date
Efraim Flashner 62694caa44
gnu: mariadb: Remove test which fails on armhf-linux. 
* gnu/packages/databases.scm (mariadb)[arguments]: Disable test
'mroonga/storage.index_read_multiple_double'.
 2018-08-07 19:55:33 +03:00
Marius Bakke 71179b35b8
gnu: mariadb: Further increase test timeouts. 
* gnu/packages/databases.scm (mariadb)[arguments]: Allow 40 minutes for single
tests, and 600 in total.
 2018-08-07 13:41:08 +02:00
Rutger Helling cc48997de5
gnu: vulkan-headers: Update to 1.1.82.0. 
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.82.0.
* gnu/packages/vulkan.scm (vulkan-loader): Update to 1.1.82.0.
* gnu/packages/vulkan.scm (vulkan-tools): Update to 1.1.82.0.
 2018-08-07 09:48:29 +02:00
Marius Bakke 3418e43bf5
gnu: mariadb: Adjust to test failures on Hydra. 
* gnu/packages/patches/mariadb-client-test-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/databases.scm (mariadb)[source](patches): Add it.
[arguments]: Increase retry count and test timeout.  Disable test
main.myisampack.
 2018-08-07 00:51:48 +02:00
Marius Bakke 6af7c2b178
Merge branch 'master' into staging 2018-08-07 00:50:25 +02:00
Nicolas Goaziou e921234d02
gnu: wireshark: Update to 2.6.2. 
* gnu/packages/networking.scm (wireshark): Update to 2.6.2.
 2018-08-06 15:53:30 +02:00
Nicolas Goaziou 8418006db2
gnu: musescore: Update to 2.3.2. 
* gnu/packages/music.scm (musescore): Update to 2.3.2.
 2018-08-06 15:35:37 +02:00
Nils Gillmann 8db83f0259
gnu: gnurl: Update to 7.61.0. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.61.0.
 2018-08-06 15:12:15 +03:00
Nicolas Goaziou c051767f4c
gnu: asymptote: Update to 2.47. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.47.
 2018-08-06 14:07:08 +02:00
Nils Gillmann 46add5615a
gnu: neomutt: Update to 20180716 [fixes CVE-2018-{14349..14363}]. 
* gnu/packages/mail.scm (neomutt): Update to 20180716.
 2018-08-06 12:50:13 +03:00
Kei Kebreau 340ee00bbf
gnu: Add povray. 
* gnu/packages/graphics.scm (povray): New variable.
 2018-08-05 00:20:25 -04:00
Christopher Baines e61f092c87
gnu: Patch duplicity with --ignore-mdc-error. 
Modify the package to patch gnu.py with an unreleased upstream change to fix
duplicity working with recent releases of GnuPG. This change make the package
build again.

* gnu/packages/backup.scm (duplicity)[arguments]: Patch gnu.py within the
patch-source phase.
 2018-08-04 08:45:57 +01:00
Mark H Weaver a058b5cfee
gnu: linux-libre: Update to 4.17.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.12.
(%linux-libre-hash): Update hash.
 2018-08-03 22:48:13 -04:00
Mark H Weaver dd53b43af1
gnu: linux-libre@4.14: Update to 4.14.60. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.60.
(%linux-libre-4.14-hash): Update hash.
 2018-08-03 22:47:00 -04:00
Mark H Weaver ca062f667e
gnu: linux-libre@4.9: Update to 4.9.117. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.117.
 2018-08-03 22:46:13 -04:00
Ricardo Wurmus 0fb0db0022
gnu: python-scipy: Only run default tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Only run the default test
suite.  The full test suite is too expensive and brittle.
 2018-08-03 15:24:40 +02:00
Ricardo Wurmus 78933bffb7
gnu: pigx-scrnaseq: Update to 0.0.7. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.7.
[inputs]: Add samtools.
 2018-08-03 15:24:40 +02:00
Arun Isaac fa0a6d93d8
gnu: emacs-exwm: Fix fullscreen issue. 
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs.scm (emacs-exwm)[sources]: Add
emacs-exwm-fix-fullscreen-issue.patch to patches.
 2018-08-03 18:21:19 +05:30
Jelle Licht ae7c1c3704
gnu: Add imapfilter. 
* gnu/packages/mail.scm (imapfilter): New variable.
 2018-08-03 03:15:26 +02:00
Danny Milosavljevic 5803f87284
gnu: Update ruby-net-ssh to 4.2.0. 
* gnu/packages/ruby.scm (ruby-net-ssh)[version]: Update to 4.2.0.
[source]: Update hash.
 2018-08-02 15:22:34 +02:00
Danny Milosavljevic 1f10e28d86
gnu: Add ruby-childprocess@0.6.3. 
* gnu/packages/ruby.scm (ruby-childprocess): Modify.
(ruby-childprocess-0.6): New variable.
 2018-08-02 15:22:27 +02:00
Efraim Flashner 165dc8bd60
gnu: minetest: Add console support. 
* gnu/packages/games.scm (minetest)[inputs]: Add ncurses.
 2018-08-02 15:31:44 +03:00
Efraim Flashner 35d5fa7696
gnu: games.scm: Arrange modules alphabetically. 
* gnu/packages/games.scm: Arrange imported modules alphabetically.
 2018-08-02 12:19:43 +03:00
Efraim Flashner 7fc90282aa
gnu: minetest: Use more system libraries. 
* gnu/packages/games.scm (minetest)[source]: Remove bundled libraries in
a snippet.
[arguments]: Add flag to use system jsoncpp.
[inputs]: Add gmp, jsoncpp. Arrange alphabetically.
 2018-08-02 12:19:42 +03:00
Efraim Flashner 7b8a753672
gnu: irrlicht: Don't use bundled libraries. 
* gnu/packages/patches/irrlicht-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (irrlicht)[source]: Add patch. Remove bundled
code and binaries in a snippet.
[native-inputs]: Remove unzip.
[inputs]: Remove glu, add bzip2, libjpeg, libpng, libx11, libxx86vm.
[arguments]: Remove custom 'unpack phase, add custom 'chdir-to-source
phase and adjust 'fix-build-env phase to changes.
 2018-08-02 12:19:42 +03:00
Efraim Flashner e8d8b485d0
gnu: minetest: Don't use unstable tarball. 
* gnu/packages/games.scm (minetest)[source]: Download from git
repository.
 2018-08-02 12:19:41 +03:00
Efraim Flashner 7217d33755
gnu: minetest-data: Don't use autogenerated tarball. 
* gnu/packages/games.scm (minetest-data)[source]: Download from git
repository.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust custom build accordingly.
 2018-08-02 12:19:37 +03:00
Ricardo Wurmus a8253fbe5f
gnu: Add net-snmp. 
* gnu/packages/networking.scm (net-snmp): New variable.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
Co-authored-by: Oleg Pykhalov <go.wigust@gmail.com>
 2018-08-01 20:31:42 +02:00
Oleg Pykhalov c54511fde0
gnu: Add cdrkit-libre. 
* gnu/packages/cdrom.scm (cdrkit-libre): New variable.
 2018-08-01 19:30:41 +03:00
Marius Bakke 4214066d45
Merge branch 'master' into core-updates 2018-08-01 15:53:17 +02:00
Marius Bakke ae66fdaf9f
gnu: Add glibc@2.28. 
* gnu/packages/base.scm (glibc-2.28): New public variable.
 2018-08-01 15:48:26 +02:00
Marius Bakke 07ca7165f9
gnu: poppler: Update to 0.67.0. 
* gnu/packages/pdf.scm (poppler): Update to 0.67.0.
 2018-08-01 15:02:36 +02:00
Marius Bakke 2207053542
gnu: dmraid: Disable parallel build. 
Fixes a race condition as reported by Brendan Tildesley
<brendan.tildesley@openmailbox.org> in <https://bugs.gnu.org/31999#187>.

* gnu/packages/disk.scm (dmraid)[arguments]: Set #:parallel-build #f.
 2018-08-01 13:32:11 +02:00
Marius Bakke ad430c7127
gnu: xdotool: Update to 3.20160805.1. 
* gnu/packages/xdisorg.scm (xdotool): Update to 3.20160805.1.
[source](patches): Remove.
[arguments]: Create output directory.
* gnu/packages/patches/xdotool-fix-makefile.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-01 13:32:11 +02:00
Marius Bakke 0027e09415
gnu: re2: Update to 2018-08-01. 
* gnu/packages/regex.scm (re2): Update to 2018-08-01.
 2018-08-01 13:32:11 +02:00
Marius Bakke 14cf45b2a5
gnu: elfutils: Update to 0.173. 
* gnu/packages/elf.scm (elfutils): Update to 0.173.
 2018-08-01 13:32:11 +02:00
Marius Bakke 3a29a3f316
gnu: freedesktop.scm: Remove unneeded imports. 
* gnu/packages/freedesktop.scm: Remove unused imports.
 2018-08-01 13:32:11 +02:00
Marius Bakke d7a503fcc6
gnu: upower: Add explicit dependency on Glib. 
* gnu/packages/gnome.scm (upower)[propagated-inputs]: New field.
 2018-08-01 13:32:11 +02:00
Marius Bakke 9ec5496525
gnu: upower: Update to 0.99.8. 
* gnu/packages/gnome.scm (upower): Update to 0.99.8.
[source](uri): Change to new download location*.
[arguments]: Remove #:phases.

* https://lists.freedesktop.org/archives/devkit-devel/2018-June/001829.html
 2018-08-01 13:32:10 +02:00
Marius Bakke bf5e7c8232
gnu: xapian: Update to 1.4.7. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.7.
 2018-08-01 13:32:10 +02:00
Marius Bakke e076d9392d
gnu: pango: Update to 1.42.3. 
* gnu/packages/gtk.scm (pango): Update to 1.42.3.
 2018-08-01 13:06:14 +02:00
Pierre Neidhardt 9805ee0a27
gnu: Add emacs-magit-todos. 
* gnu/packages/emacs.scm (emacs-magit-todos): New variable.
 2018-08-01 12:59:37 +02:00
Pierre Neidhardt d5af41cd01
gnu: Add emacs-pcre2el. 
* gnu/packages/emacs.scm (emacs-pcre2el): New variable.
 2018-08-01 12:59:27 +02:00
Efraim Flashner ec38e8dad0
gnu: libreoffice: Update to 6.0.6.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.0.6.2.
 2018-08-01 11:19:28 +03:00
Marius Bakke 0d206dd054
gnu: lvm2: Fix static linking of dmeventd. 
Fixes a regression introduced in a3ed69b694
where dmeventd.static fails to link against libm and breaks "lvm2-static".

* gnu/packages/patches/lvm2-static-link.patch: Patch make.tmpl.in.
 2018-07-31 22:18:51 +02:00
Efraim Flashner 64ed4b6a27
gnu: optipng: Use system libraries. 
* gnu/packages/image.scm (optipng)[source]: Add snippet to delete
bundled libraries.
[inputs]: Add libpng.
[arguments]: Add configure-flag to use system libraries.
 2018-07-31 23:12:50 +03:00
Efraim Flashner 52404022cf
gnu: python-pyqt: Add qtwebkit. 
* gnu/packages/qt.scm (python-pyqt)[inputs]: Add qtwebkit.
 2018-07-31 17:46:01 +03:00
Andreas Enge 601cb1be2b
gnu: qtwebkit: Update to 5.212.0-alpha2. 
* gnu/packages/patches/qtwebkit-pbutils-include.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/qt.scm (qtwebkit): Update to 5.212.0-alpha2.
[source]: Use new upstream location. Add patch.
[build-system]: Switch to cmake-build-system.
[inputs]: Add glib, gst-plugins-base, qtlocation, qtsensors,
qtwebchannel.
[arguments]: Disable the tests. Add new configure flags. Remove all
custom phases.
 2018-07-31 17:45:58 +03:00
Pierre Neidhardt 92eb7aff41
gnu: Update udisks to 2.7.7. 
* gnu/package/freedesktop.scm (udisks): Update to 2.7.7.
[inputs]: Replace parted with libblockdev.
 2018-07-30 21:51:44 +02:00
Pierre Neidhardt fac91b39f5
gnu: Add libblockdev. 
* gnu/package/disk.scm (libblockdev): New variable.
 2018-07-30 21:51:44 +02:00
Pierre Neidhardt 82aac7c1f2
gnu: Add dmraid. 
* gnu/package/disk.scm (dmraid): New variable.
 2018-07-30 21:51:44 +02:00
Pierre Neidhardt a3ed69b694
gnu: lvm2: Add device-mapper-event support. 
* GNU/packages/linux.scm (lvm2)[configure-flags]: Build device-mapper-event.
 2018-07-30 21:51:43 +02:00
Pierre Neidhardt c229fb3d88
gnu: Add libbytesize. 
* gnu/package/c.scm (libbytesize): New variable.
 2018-07-30 21:51:43 +02:00
Pierre Neidhardt f7a4f7c041
gnu: Add ndctl. 
* gnu/package/disk.scm (ndctl): New variable.
 2018-07-30 21:51:43 +02:00
Pierre Neidhardt dedc0d0b7e
gnu: Add volume-key. 
* gnu/package/disk.scm (volume-key): New variable.
 2018-07-30 21:51:43 +02:00
Kei Kebreau e4a744da9f
gnu: minetest: Update to 0.4.17.1. 
* gnu/packages/games.scm (minetest): Update to 0.4.17.1.
 2018-07-30 13:16:31 -04:00
Kei Kebreau fbc3b802b7
gnu: retux: Return #t from all phases. 
* gnu/packages/games.scm (retux)[arguments]: Return #t from the 'install' phase.
 2018-07-30 12:56:41 -04:00
Kei Kebreau 0856e3e900
gnu: gnubg: Update to 1.06.001. 
* gnu/packages/games.scm (gnubg): Update to 1.06.001.
 2018-07-30 12:33:42 -04:00
Kei Kebreau 715a44e930
gnu: golly: Update to 3.2. 
* gnu/packages/games.scm (golly): Update to 3.2.
 2018-07-30 12:27:54 -04:00
Marius Bakke 869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Marius Bakke b90289dadc
gnu: zlib: Move static library to separate output. 
* gnu/packages/compression.scm (zlib)[outputs]: New field.
[arguments]: Add phase 'move-static-library'.
 2018-07-30 17:09:07 +02:00
Marius Bakke 7b84410046
gnu: curl: Don't build static library. 
* gnu/packages/curl.scm (curl)[arguments]: Add "--disable-static" to
  #:configure-flags.
 2018-07-30 17:00:07 +02:00
Marius Bakke a44426ee01
gnu: shishi: Don't build static library. 
* gnu/packages/kerberos.scm (shishi)[arguments]: Add "--disable-static" to
  #:configure-flags.
 2018-07-30 16:59:33 +02:00
Marius Bakke 85b4482308
gnu: libidn: Don't build static libraries. 
* gnu/packages/libidn.scm (libidn)[arguments]: New field.
 2018-07-30 16:58:56 +02:00
Marius Bakke 1f2d64e4a8
gnu: libunistring: Don't install static library. 
* gnu/packages/libunistring.scm (libunistring)[arguments]: Add #:configure-flags.
 2018-07-30 16:42:59 +02:00
Marius Bakke cd9ad095c7
gnu: libidn2: Don't build static library. 
* gnu/packages/libidn.scm (libidn2)[arguments]: New field.
 2018-07-30 16:35:35 +02:00
Marius Bakke d9f8461250
gnu: libtasn1: Don't build static library. 
* gnu/packages/tls.scm (libtasn1)[arguments]: New field.
 2018-07-30 16:33:50 +02:00
Kei Kebreau f475b90c35
gnu: warzone2100: Update to 3.2.3. 
* gnu/packages/games.scm (warzone2100): Update to 3.2.3.
[arguments]: Add "--with-distributor=Guix" to #:configure-flags.  Remove
'remove-reference-to-missing-file' and 'patch-for-qt5.8' phases.  Add
'fix-ivis-linktest' phase.
[native-inputs]: Add gettext-minimal.
[inputs]: Add harfbuzz and remove quesoglc.
 2018-07-30 10:33:11 -04:00
Marius Bakke b4052c96ee
gnu: nettle: Move static libraries to separate output. 
* gnu/packages/nettle.scm (nettle-2)[outputs]: Add "static".
[arguments]: Add #:phases.
 2018-07-30 16:22:04 +02:00
Marius Bakke f419abea22
gnu: openblas: Update to 0.3.2. 
* gnu/packages/maths.scm (openblas): Update to 0.3.2.
 2018-07-30 15:32:10 +02:00
Efraim Flashner de596e9954
gnu: parallel: Update to 20180722. 
* gnu/packages/parallel.scm (parallel): Update to 20180722.
 2018-07-30 14:58:28 +03:00
Efraim Flashner 1121a5c67a
gnu: openssh: Update home-page. 
* gnu/packages/ssh.scm (openssh)[home-page]: Update to new home-page.
 2018-07-30 14:41:14 +03:00
Efraim Flashner 5416e40f1a
gnu: tig: Update to 2.4.1. 
* gnu/packages/version-control.scm (tig): Update to 2.4.1.
[description]: Fix texinfo markup.
 2018-07-30 14:38:17 +03:00
Efraim Flashner 6915d20f05
gnu: monero-gui: Build with modular qt. 
* gnu/packages/finance.scm (monero-gui)[inputs]: Remove qt, add qtbase,
qtdeclarative, qtgraphicaleffects, qtquickcontrols.
[native-inputs]: Add qttools.
[arguments]: Add a custom phase to patch the absolute file-name of
lrelease and lupdate. Add a custom phase to wrap the executable with QT
environmental variables.
 2018-07-30 09:50:37 +03:00
Arun Isaac 0c85d2c62d
gnu: youtube-dl: Update to 2018.07.29. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.07.29.
 2018-07-30 10:52:08 +05:30
Clément Lassieur 78022159a7
gnu: cuirass: Update to 99241ef. 
* gnu/packages/ci.scm (cuirass): Update to 99241ef.
 2018-07-30 00:46:26 +02:00
Alex ter Weele 1237653aa5
gnu: Add emacs-agda2-mode 
* gnu/packages/agda.scm (emacs-agda2-mode): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-07-29 23:33:40 +02:00
Alex ter Weele 253340dcc8
gnu: agda: Compile .agda files. 
* gnu/packages/agda.scm: (agda)[arguments]: Compile .agda files.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-07-29 23:32:01 +02:00
Marius Bakke 1743172cdb
gnu: libreoffice: Fix build with newer GLM. 
* gnu/packages/patches/libreoffice-glm.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add it.
 2018-07-29 21:31:55 +02:00
Marius Bakke 4266df5cf8
gnu: libwps: Update to 0.4.9. 
* gnu/packages/libreoffice.scm (libwps): Update to 0.4.9.
 2018-07-29 20:37:59 +02:00
Efraim Flashner 3729767418
gnu: make-u-boot-package: Add missing module. 
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]: Add
missing 'srfi srfi-1' module.
 2018-07-29 20:49:42 +03:00
Efraim Flashner 76e206e644
gnu: Add fdroidserver. 
* gnu/packages/android.scm (fdroidserver): New variable.
 2018-07-29 20:00:34 +03:00
Efraim Flashner b24da117e8
gnu: python-docker-py: Update to 1.10.6. 
* gnu/packages/docker.scm (python-docker-py): Update to 1.10.6.
 2018-07-29 20:00:33 +03:00
Efraim Flashner 5e95181b9d
gnu: Add python-vagrant. 
* gnu/packages/virtualization.scm (python-vagrant): New variable.
 2018-07-29 20:00:33 +03:00
Efraim Flashner b23b9667d9
gnu: virtualization.scm: Use license prefix. 
* gnu/packages/virtualization.scm: Replace all 'license' values with a
'license:' prefix.
 2018-07-29 20:00:33 +03:00
Efraim Flashner 2b1e80d2a9
gnu: Add python-androguard. 
* gnu/packages/android.scm (python-androguard): New variable.
 2018-07-29 20:00:33 +03:00
Efraim Flashner c3f9a6ce67
gnu: Add python-codecov. 
* gnu/packages/check.scm (python-codecov): New variable.
 2018-07-29 20:00:32 +03:00
Efraim Flashner 19110787ab
gnu: Add python-pyperclip. 
* gnu/packages/xdisorg.scm (python-pyperclip): New variable.
 2018-07-29 20:00:32 +03:00
Efraim Flashner 42531fd3a7
gnu: Add python-docker-pycreds. 
* gnu/packages/docker.scm (python-docker-pycreds): New variable.
 2018-07-29 20:00:32 +03:00
Efraim Flashner 2973989060
gnu: quaternion: Build with modular qt. 
* gnu/packages/messaging.scm (quaternion)[inputs]: Remove qt, add
qtbase, qtdeclarative.
 2018-07-29 20:00:32 +03:00
Efraim Flashner 9febf39582
gnu: libqmatrixclient: Build with modular qt. 
* gnu/packages/messaging.scm (libqmatrixclient)[inputs]: Remove qt, add
qtbase.
 2018-07-29 20:00:31 +03:00
Efraim Flashner 6f066db11f
gnu: quaternion: Don't use unstable tarball. 
* gnu/packages/messaging.scm (quaternion)[source]: Download using git
reference and not autogenerated tarball.
 2018-07-29 20:00:31 +03:00
Efraim Flashner c6b60d30ad
gnu: libqmatrixclient: Don't use unstable tarball. 
* gnu/packages/messaging.scm (libqmatrixclient)[source]: Download using
git reference and not autogenerated tarball.
 2018-07-29 20:00:31 +03:00
Efraim Flashner 398a96a286
gnu: monero-gui: Use git-file-name. 
* gnu/packages/finance.scm (monero-gui)[source]: Rename the downloaded
source using 'git-file-name'.
 2018-07-29 20:00:30 +03:00
Efraim Flashner 136ff9a247
gnu: monero: Use git-file-name. 
* gnu/packages/finance.scm (monero)[source]: Rename the downloaded
source using 'git-file-name'.
 2018-07-29 20:00:30 +03:00
Efraim Flashner 077d66ed42
gnu: mcrl2: Build with modular qt. 
* gnu/packages/maths.scm (mcrl2)[inputs]: Replace qt with qtbase.
 2018-07-29 20:00:30 +03:00
Christopher Baines 6465497fb9
gnu: Remove duplicated python-pafy. 
It was first added in 02f8f804f0, then again in
2dd12924cf.

* gnu/packages/python.scm (python-pafy): Remove duplicated package definition.
 2018-07-29 17:57:53 +01:00
Christopher Baines 3b4b6667af
gnu: Remove duplicated perl-extutils-depends. 
This was first added in 84e8b19fe1, and then
again in 017b014ce4.

* gnu/packages/perl.scm (perl-extutils-depends): Remove duplicated package
definition.
 2018-07-29 17:57:53 +01:00
Christopher Baines f694b4ba9c
gnu: Remove duplicated ghc-time-locale-compat. 
It was first added in 5e51bcf7b3, then again in
c56a30b3ba.

* gnu/packages/haskell.scm (ghc-time-locale-compat): Remove duplicated package
definition.
 2018-07-29 17:57:52 +01:00
Christopher Baines 89b4882176
gnu: Remove duplicated ghc-th-lift-instances. 
It was first added in a6d1c4e75a, then again in
ff7dd11f0a.

* gnu/packages/haskell.scm (ghc-th-lift-instances): Remove duplicated package
definition.
 2018-07-29 17:57:52 +01:00
Christopher Baines cfa6cc4d9a
gnu: Remove duplicated r-psych package. 
It was first added in cdc129dc53, then again in
db80dd4a1d.

* gnu/packages/cran.scm (r-psych): Remove duplicated package definition.
 2018-07-29 17:57:52 +01:00
Christopher Baines d493d59a7f
gnu: Remove duplicated emacs-load-relative. 
It was first added in fa1a17b786, and then again
in f8a88f223e.

* gnu/packages/emacs.scm (emacs-load-relative): Remove duplicated package
definition.
 2018-07-29 17:57:52 +01:00
Christopher Baines 26b8cd1a5a
gnu: Remove duplicated emacs-csv-mode. 
It was first added in 9faa46ee48, and then again
in 8bc8efc753.

* gnu/packages/emacs.scm (emacs-csv-mode): Remove duplicated package
definition.
 2018-07-29 17:57:52 +01:00
Ben Woodcroft 3f8c82e6d3
gnu: taxtastic: Add missing propagated-inputs. 
* gnu/packages/bioinformatics.scm (taxtastic)[propagated-inputs]: Add
python-psycopg2, python-fastalite, python-pyyaml, python-six, python-jinja2,
python-dendropy.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft 9e0c135c39
gnu: python-dendropy: Update to 4.4.0. 
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy):
Update to 4.4.0.
[source]: Use GitHub URI. Remove patch.
[properties]: Remove field.
(python2-dendropy)[arguments]: Run tests with setup.py.
[native-inputs]: Remove 'python2-nose.
* gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete it.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft 19601e895b
gnu: python2-psycopg2: Update to 2.7.5. 
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft 5d5a02dd4c
gnu: Add python-fastalite. 
* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite):
New variables.
 2018-07-29 21:58:00 +10:00
Christopher Lemmer Webber 10d5315361
gnu: Add chroma. 
* gnu/packages/games.scm (chroma): New variable.
 2018-07-29 09:37:20 +02:00
Mark H Weaver f8e2df9851
gnu: linux-libre: Update to 4.17.11. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.11.
(%linux-libre-hash): Update hash.
 2018-07-29 03:32:03 -04:00
Mark H Weaver c85a76cc00
gnu: linux-libre@4.14: Update to 4.14.59. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.59.
(%linux-libre-4.14-hash): Update hash.
 2018-07-29 03:31:10 -04:00
Mark H Weaver 8b30bc82dc
gnu: linux-libre@4.9: Update to 4.9.116. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.116.
 2018-07-29 03:30:32 -04:00
Mark H Weaver 4262a491ce
gnu: linux-libre@4.4: Update to 4.4.145. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.145.
 2018-07-29 03:29:42 -04:00
Gábor Boskovits 6219685922
gnu: clojure: Fix index generation. 
* gnu/packages/java.scm (clojure)[arguments]: Add phase 'fix-manifest-classpath to remove
offending directory entry making indexing fail.
 2018-07-29 08:41:34 +02:00
Marius Bakke d37d975b74
gnu: python-pytest: Update to 3.6.4. 
* gnu/packages/check.scm (python-pytest): Update to 3.6.4.
[native-inputs]: Remove PYTHON-INVOKE.
 2018-07-28 23:39:00 +02:00
Marius Bakke 20b0aaf986
gnu: python-fonttools: Update license. 
This is a follow-up to commit 4696368108.

* gnu/packages/python.scm (python-fonttools)[license]: Change to EXPAT (since 3.21).
 2018-07-28 23:37:52 +02:00
Marius Bakke d0ab3c33b7
gnu: mesa: Update to 18.1.5. 
* gnu/packages/gl.scm (mesa): Update to 18.1.5.
 2018-07-28 21:35:07 +02:00
Marius Bakke 148df6052c
Revert "Revert "gnu: llvm: Update to 6.0.1."" 
This reverts commit bb8221d41c.
 2018-07-28 21:23:11 +02:00
Efraim Flashner a4b7a1cb4a
gnu: python-3.7: Update deleted tests. 
* gnu/packages/python.scm (python-3.7)[source]: Update the list of files
to be deleted in the snippet.
 2018-07-28 21:56:28 +03:00
Marius Bakke 0333582477
gnu: mariadb: Move GCC ICE patch to the usual location. 
* gnu/packages/databases.scm (mariadb)[source](patches): New field.
[arguments]: Don't disable semisync plugin.
[inputs]: Remove 'mariadb-gcc-ice.patch'.
 2018-07-28 18:37:37 +02:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Marius Bakke 48d7ac175f
gnu: openlibm: Update to 0.6.0. 
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
 2018-07-28 18:12:13 +02:00
Marius Bakke 46bda5eb7a
gnu: glm: Update home page. 
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
 2018-07-28 17:56:59 +02:00
Marius Bakke 5ea4b5943d
gnu: glm: Update to 0.9.9.0. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.0.
[source](uri): Change to new download location.
 2018-07-28 17:55:04 +02:00
Marius Bakke 71de61c353
gnu: libjpeg-turbo: Update license. 
* gnu/packages/image.scm (libjpeg-turbo)[license]: Add ZLIB.
 2018-07-28 17:27:16 +02:00
Marius Bakke 6871121be0
gnu: libjpeg-turbo: Update to 2.0.0. 
* gnu/packages/image.scm (libjpeg-turbo): Update to 2.0.0.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
 2018-07-28 17:27:16 +02:00
Marius Bakke 0981ec1300
gnu: accountsservice: Update to 0.6.50. 
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.50.
[arguments]: Add "--enable-elogind" and "--disable-systemd" to #:configure-flags.
[inputs]: Add ELOGIND.
 2018-07-28 17:27:15 +02:00
Marius Bakke 35fa923d8b
gnu: dconf: Update to 0.28.0. 
* gnu/packages/gnome.scm (dconf): Update to 0.28.0.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
[native-inputs]: Add VALA and GLIB:BIN.
 2018-07-28 17:27:15 +02:00
Marius Bakke e20e6b4061
gnu: dconf: Update license. 
* gnu/packages/gnome.scm (dconf)[license]: Change from LGPL2.1 to LGPL2.1+.
 2018-07-28 17:27:15 +02:00
Marius Bakke 03676d6f35
gnu: dconf: Install GTK documentation. 
* gnu/packages/gnome.scm (dconf)[native-inputs]: Add GTK-DOC.
[arguments]: Adjust #:configure-flags accordingly.
 2018-07-28 17:27:15 +02:00
Marius Bakke bc036f4c99
gnu: dconf: Adjust inputs and remove obsolete workaround. 
* gnu/packages/gnome.scm (dconf)[inputs]: Remove GLIB and LIBXML2.
[propagated-inputs]: Add GLIB.
[native-inputs]: Add LIBXML2.  Remove INTLTOOL.
[arguments]: Remove #:phases.
 2018-07-28 17:27:15 +02:00
Marius Bakke 4696368108
gnu: python-fonttools: Update to 3.28.0. 
* gnu/packages/python.scm (python-fonttools): Update to 3.28.0.
[arguments]: Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
 2018-07-28 15:52:30 +02:00
Marius Bakke fc8778e293
gnu: gdb: Fix build with Python >= 3.7. 
* gnu/packages/patches/gdb-python-3.7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gdb.scm (gdb)[source](patches): New field.
 2018-07-28 15:52:30 +02:00
Marius Bakke 25ccb99347
gnu: python-pytest-mock: Update to 1.10.0. 
* gnu/packages/check.scm (python-pytest-mock): Update to 1.10.1.
 2018-07-28 15:52:30 +02:00
Marius Bakke a9ae30b78e
gnu: python-pytest: Update to 3.6.3. 
* gnu/packages/check.scm (python-pytest): Update to 3.6.3.
[propagated-inputs]: Add PYTHON-ATOMICWRITES.
[native-inputs]: Add PYTHON-INVOKE.
 2018-07-28 15:52:29 +02:00
Marius Bakke 1166b9c795
gnu: Add python-invoke. 
* gnu/packages/python.scm (python-invoke, python2-invoke): New public variables.
 2018-07-28 15:52:29 +02:00
Marius Bakke 9f585a528e
gnu: python-pytest-cov: Update to 2.5.1. 
* gnu/packages/check.scm (python-pytest-cov): Update to 2.5.1.
 2018-07-28 15:52:29 +02:00
Marius Bakke 85f1342f01
gnu: python-hypothesis: Update to 3.66.6. 
* gnu/packages/check.scm (python-hypothesis): Update to 3.66.6.
 2018-07-28 15:52:29 +02:00
Marius Bakke 153812ee0d
gnu: python-flake8: Update to 3.5.0. 
* gnu/packages/python.scm (python-flake8): Update to 3.5.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke fb4c6115f5
gnu: python-pytest-runner: Update to 4.2. 
* gnu/packages/check.scm (python-pytest-runner): Update to 4.2.
[arguments]: Remove.
 2018-07-28 15:52:28 +02:00
Marius Bakke d0205dfd92
gnu: python-setuptools: Update to 40.0.0. 
* gnu/packages/python.scm (python-setuptools): Update to 40.0.0.
[source](uri): Adjust to zipball archive.
 2018-07-28 15:52:28 +02:00
Marius Bakke fdf5344a23
gnu: python-pycodestyle: Update to 2.4.0. 
* gnu/packages/python.scm (python-pycodestyle): Update to 2.4.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke 9e7d6e818c
gnu: python-more-itertools: Update to 4.2.0. 
* gnu/packages/python.scm (python-more-itertools): Update to 4.2.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke e8e7cd12c7
gnu: python-pyflakes: Update to 2.0.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 2.0.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke 3765c9c95b
gnu: python-py: Update home page. 
* gnu/packages/python.scm (python-py)[home-page]: Change to repository URL.
 2018-07-28 15:52:27 +02:00
Marius Bakke a0d77eba72
gnu: python-py: Update to 1.5.4. 
* gnu/packages/python.scm (python-py): Update to 1.5.4.
 2018-07-28 15:52:27 +02:00
Marius Bakke bc46a45ae7
gnu: python-py: Add missing dependency on setuptools-scm. 
* gnu/packages/python.scm (python-py)[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
 2018-07-28 15:52:26 +02:00
Marius Bakke a422e2478e
gnu: python: Build reproducibly. 
\o/

* gnu/packages/python.scm (python-3.7)[arguments]: Set PYTHONHASHSEED before
rebuilding all bytecode.  Adjust regex so that lib2to3_ex.py gets compiled.
 2018-07-28 15:52:26 +02:00
Marius Bakke 81d967075e
gnu: python: Rebuild bytecode after removing tests. 
* gnu/packages/python.scm (python-3.7)[arguments]: Run 'rebuild-bytecode'
after 'remove-tests' to save CPU cycles.  Adjust exclude regex.
 2018-07-28 15:52:26 +02:00
Marius Bakke a1454169e0
gnu: python: Update to 3.7.0. 
* gnu/packages/python.scm (python-3.6): Rename to ...
(python-3.7): ... this.  Update to 3.7.0.
[arguments]: Remove phase 'patch-timestamp-for-pyc-files' and related code.
Add phases to unset SOURCE_DATE_EPOCH during the check phase.
(python-3): Is now PYTHON-3.7.
* guix/build/python-build-system.scm (enable-bytecode-determinism): Don't set
DETERMINISTIC_BUILD.
 2018-07-28 15:52:26 +02:00
Marius Bakke d66146073d
gnu: python: Remove outdated comment and phases. 
* gnu/packages/python.scm (python-2.7)[arguments]: Don't set SOURCE_DATE_EPOCH
or make libraries writable, since those are handled by gnu-build-system.
(python-3.6): Don't override :#tests?.
 2018-07-28 15:52:25 +02:00