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18093 Commits

Author SHA1 Message Date
Ricardo Wurmus eda8f36cd6
gnu: r-rcas: Update to 1.3.3. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
 2017-09-01 10:26:30 +02:00
Efraim Flashner 7d099cbe13
gnu: mysql: Enable tests on aarch64. 
* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling
the tests on aarch64-linux.
 2017-09-01 10:50:39 +03:00
Ben Woodcroft f4bf420c84
gnu: vsearch: Update to 2.4.4. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
 2017-09-01 14:45:57 +08:00
Ben Woodcroft 25bd1fc1c1
gnu: metabat: Update to 2.12.1. 
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1.
[source]: Remove it.  Use url-fetch.
 2017-09-01 14:45:57 +08:00
Thomas Danckaert 43d01672a1
gnu: netcdf: Fix reproducibility issue; remove unneeded references. 
* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
  'Configured On' date; truncate reference to compiler store item.
 2017-09-01 08:34:32 +02:00
Thomas Danckaert e464b4550e
gnu: hdf4: Avoid unneeded store references to compilers. 
* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
  truncate hashes of compiler store items.
 2017-09-01 08:34:32 +02:00
Thomas Danckaert fd0378a147
gnu: hdf5: Avoid unneeded store references to compilers. 
* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch
  "libhdf5.settings", removing references to the C/C++/Fortran compilers.
 2017-09-01 08:34:31 +02:00
Thomas Danckaert e3a1a1deda
gnu: hdf5: Add output for fortran interface. 
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
  [outputs]: Add "fortran".
  [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
  output to the runpath of the Fortran libs; add a 'split phase to move
  all Fortran-related files to the the Fortran output store location.
 2017-09-01 08:34:24 +02:00
Arun Isaac a0596a2f27
gnu: python2-larch: Enable tests. 
* gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python2-larch)[source]: Use it.
[arguments]: Move 'check' phase to before 'build' phase.
 2017-09-01 11:14:16 +05:30
Arun Isaac f618086220
gnu: python2-ttystatus: Enable tests. 
* gnu/packages/python.scm (python2-ttystatus)[arguments]: Replace 'check'
phase with custom function.
 2017-09-01 11:14:16 +05:30
Arun Isaac 689042e526
gnu: python2-cliapp: Enable tests. 
* gnu/packages/python.scm (python2-cliapp)[arguments]: Replace 'check' phase
with custom function.
 2017-09-01 11:14:16 +05:30
Mark H Weaver fe36ecf5c8
gnu: linux-libre: Update to 4.12.10. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.10.
(%linux-libre-hash): Update hash.
 2017-09-01 00:31:55 -04:00
Mark H Weaver 2131663a76
gnu: linux-libre@4.9: Update to 4.9.46. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.46.
 2017-09-01 00:31:16 -04:00
Mark H Weaver d215e41a26
gnu: linux-libre@4.4: Update to 4.4.85. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.85.
 2017-09-01 00:30:17 -04:00
Marius Bakke 1b3f5fc387
gnu: libxml2/fixed: Use patches from inherited package. 
This is a followup to 76fed2b3c4.

* gnu/packages/xml.scm (libxml2/fixed)(patches): Inherit patches from LIBXML2.
 2017-08-31 23:43:55 +02:00
Efraim Flashner 0ff44ba464
gnu: graphicsmagick: Fix CVE-2017-{13775,13776,13777}. 
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patches.
* gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-09-01 00:02:27 +03:00
Efraim Flashner d36212e94d
gnu: efl: Update to 1.20.3. 
* gnu/packages/enlightenment.scm (efl): Update to 1.20.3.
 2017-09-01 00:02:25 +03:00
Christopher Baines a9d5e4bed1
gnu: Fix current-guix. 
Without this change, I get errors like:
  ERROR: In procedure string-drop:
  ERROR: Value out of range 0 to 35: 51

* gnu/packages/package-management.scm (current-guix): Pass exactly the same
  path to git-predicate and local-file, to ensure that the select? function is
  compatible.
 2017-08-31 21:48:05 +01:00
Marius Bakke fa9f5222a9
gnu: sddm: Update to 0.15.0. 
* gnu/packages/display-managers.scm (sddm): Update to 0.15.0.
[source]: Update tarball name.
[inputs]: Add ELOGIND.
[arguments]: Adjust #:configure-flags for elogind support. Add phase to
patch hard-coded loginctl reference.
 2017-08-31 22:35:54 +02:00
Alex Vong 76fed2b3c4
gnu: libxml2: Fix CVE-2017-{0663,7375,7376,9047,9048,9049,9050}. 
* gnu/packages/patches/libxml2-CVE-2017-0663.patch,
gnu/packages/patches/libxml2-CVE-2017-7375.patch,
gnu/packages/patches/libxml2-CVE-2017-7376.patch,
gnu/packages/patches/libxml2-CVE-2017-9047+CVE-2017-9048.patch,
gnu/packages/patches/libxml2-CVE-2017-9049+CVE-2017-9050.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-31 21:45:36 +02:00
Marius Bakke ff54f194f3
gnu: postgresql: Update to 9.6.5. 
* gnu/packages/databases.scm (postgresql): Update to 9.6.5.

Release-notes: https://www.postgresql.org/docs/9.6/static/release-9-6-5.html
 2017-08-31 21:34:20 +02:00
Ricardo Wurmus 59ff96aafd
gnu: Remove python2-rpy2. 
Python 2 is no longer supported.

* gnu/packages/python.scm (python2-rpy2): Remove variable.
 2017-08-31 18:24:52 +02:00
Ricardo Wurmus deee5ddaf4
gnu: python-rpy2: Update to 2.9.0. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.0.
[arguments]: Run tests before install phase; add build phase "fix-tests".
[propagated-inputs]: Add python-jinja2 and python-pytz.
[inputs]: Add r-ggplot2, r-rsqlite, r-dplyr, r-dbplyr, and python-numpy.
 2017-08-31 18:24:51 +02:00
Ricardo Wurmus c92483bd63
gnu: python-rpy2: Update license. 
* gnu/packages/python.scm (python-rpy2)[license]: Correct GPLv3+ to GPLv2+;
list additional licenses.
 2017-08-31 18:24:51 +02:00
Ricardo Wurmus caa4e796e4
gnu: Add r-dbplyr. 
* gnu/packages/statistics.scm (r-dbplyr): New variable.
 2017-08-31 18:24:51 +02:00
Kei Kebreau 4eebfefe7e
gnu: retux: Update to 1.3.5. 
* gnu/packages/games.scm (retux): Update to 1.3.5.
 2017-08-31 11:38:00 -04:00
Kei Kebreau 95c1324adc
gnu: python-tmx: Update to 1.10. 
* gnu/packages/game-development.scm (python-tmx): Update to 1.10.
 2017-08-31 11:38:00 -04:00
Kei Kebreau b1d1a10c7c
gnu: python-sge-pygame: Update to 1.5.1. 
* gnu/packages/game-development.scm (python-sge-pygame,
python2-sge-pygame): Update to 1.5.1.
 2017-08-31 11:37:59 -04:00
Marius Bakke 7e31427ff0
gnu: python-pyjwt: Update to 1.5.2 [fixes CVE-2017-11424]. 
* gnu/packages/python.scm (python-pyjwt): Update to 1.5.2.
[source]: Add snippet to remove pre-compiled files.
[native-inputs]: Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
 2017-08-31 15:45:43 +02:00
Peter Mikkelsen 5883bb76f8
gnu: Add emacs-idris-mode. 
* gnu/packages/emacs.scm (emacs-idris-mode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 14:58:34 +02:00
Peter Mikkelsen b9dcaced16
gnu: Add emacs-prop-menu. 
* gnu/packages/emacs.scm (emacs-prop-menu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 14:57:53 +02:00
Tobias Geerinckx-Rice 79ada57ba9
gnu: knot: Update to 2.5.4. 
* gnu/packages/dns.scm (knot): Update to 2.5.4.
 2017-08-31 13:53:04 +02:00
Paul Garlick 1c25a52c4a
gnu: Add pt-scotch32. 
* gnu/packages/maths.scm (pt-scotch32): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 12:34:50 +02:00
Paul Garlick 1c39f3b877
gnu: Add "scotch32". 
* gnu/packages/maths.scm (scotch32): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 12:34:50 +02:00
Ben Woodcroft 0691851a64
gnu: bioinformatics: Work around more "dotless @INC" build failures. 
* gnu/packages/bioinformatics.scm (ncbi-vdb, sra-tools)[arguments]: Add
'set-perl-search-path' phase.
 2017-08-31 12:37:05 +08:00
Ben Woodcroft c959e5a1dc
gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}. 
* gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.2.7)[source]: Use it.
 2017-08-31 10:43:19 +08:00
Ben Woodcroft db542518b3
gnu: ruby-2.3.4: Fix CVE-2017-{0899,0900,0901,0902}. 
* gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.3.4)[source]: Use it.
 2017-08-31 10:43:19 +08:00
Ben Woodcroft 9770cbf9e2
gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}. 
* gnu/packages/patches/ruby-rubygems-2612-ruby24.patch,
gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ruby.scm (ruby-2.4.1)[source]: Use them.
 2017-08-31 10:43:19 +08:00
Ben Woodcroft 690a904ad7
gnu: metabat: Update to 2.11.3. 
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.3.
[source]: Use git-fetch.  Remove boost-related patch.
* gnu/packages/patches/metabat-fix-boost-issue.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-31 10:43:18 +08:00
Marius Bakke 2d2e97bd71
gnu: vlc: Fix build and clean up expression. 
Commit 3e0c54bf4d touches 'configure.ac' which
in turn regenerates 'po/Makefile.in.in' with the wrong SHELL and breaks
install.  While at it, consolidate the other patching phases and remove
unneeded inputs.

* gnu/packages/video.scm (vlc)[arguments]: Consolidate patching phases into a
'patch-source' phase and run it immediately after unpack.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
 2017-08-31 03:43:54 +02:00
Marius Bakke 3e0c54bf4d
gnu: vlc: Recover lost phase. 
This is a followup to eb1f2420d5.

* gnu/packages/video.scm (vlc)[arguments]: Run the fix-livemedia-utils-prefix
phase before configure.
 2017-08-31 03:05:24 +02:00
Marius Bakke 4f68156140
gnu: gd: Replace with 2.2.5. 
Fixes CVE-2017-6362 and CVE-2017-7890.

* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd-2.2.5): New variable.
* gnu/packages/php.scm (gd-for-php): Remove variable
(php)[inputs]: Replace GD-FOR-PHP with GD-2.2.5.
* gnu/packages/patches/gd-CVE-2017-7890.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-31 02:49:43 +02:00
Tobias Geerinckx-Rice cad88b8533
gnu: claws-mail: Update to 3.15.1. 
* gnu/packages/mail.scm (claws-mail): Update to 3.15.1.
 2017-08-31 00:57:46 +02:00
Ludovic Courtès 9ff7161a06
gnu: Add texlive-latex-acmart. 
* gnu/packages/tex.scm (texlive-latex-acmart): New variable.
 2017-08-31 00:03:20 +02:00
Marius Bakke 9749746544
gnu: mbedtls-apache: Update to 2.6.0 [fixes CVE-2017-14032]. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.6.0.
 2017-08-30 22:41:40 +02:00
Marius Bakke eb1f2420d5
gnu: vlc: Remove obsolete test workaround. 
* gnu/packages/video.scm (vlc)[arguments]: Drop ac_cv_c_fast_math from
  #:configure-flags.  Remove related 'bootstrap' phase.
 2017-08-30 22:35:45 +02:00
Marius Bakke 552c3e95f3
gnu: vlc: Build with modular qt. 
* gnu/packages/video.scm (vlc)[inputs]: Remove QT.  Add QTBASE and QTX11EXTRAS.
[arguments]: Add CXXFLAGS=-std=gnu++11 to #:configure-flags.  Add
'fix-qt-include' phase.
 2017-08-30 22:22:51 +02:00
Marius Bakke 2de7d137b3
gnu: qemu: Update to 2.10.0. 
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11334.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch,
gnu/packages/patches/qemu-CVE-2017-12809.patch:
gnu/packages/patches/qemu-CVE-2017-7493.patch,
gnu/packages/patches/qemu-CVE-2017-8112.patch,
gnu/packages/patches/qemu-CVE-2017-8309.patch,
gnu/packages/patches/qemu-CVE-2017-8379.patch,
gnu/packages/patches/qemu-CVE-2017-8380.patch,
gnu/packages/patches/qemu-CVE-2017-9524.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.0.
[source](patches): Remove.
 2017-08-30 20:50:13 +02:00
Marius Bakke ffeeda6bab
gnu: jsoncpp: Update to 1.8.2. 
* gnu/packages/serialization.scm (jsoncpp): Update to 1.8.2.
 2017-08-30 20:36:40 +02:00
Ricardo Wurmus 799247d2d9
gnu: multiqc: Update to 1.2. 
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.2.
[source]: Remove patches.
[arguments]: Remove to enable tests.
[propagated-inputs]: Add python-spectra, python-requests, python-markdown,
python-lzstring.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-30 17:32:00 +02:00
Ricardo Wurmus 4a7d2009c8
gnu: Add python-spectra. 
* gnu/packages/python.scm (python-spectra, python2-spectra): New variables.
 2017-08-30 17:32:00 +02:00
Ricardo Wurmus beed6abc1d
gnu: Add python-colormath. 
* gnu/packages/python.scm (python-colormath, python2-colormath): New
variables.
 2017-08-30 17:31:59 +02:00
Ricardo Wurmus bac5fd21a1
gnu: python-jinja2: Update to 2.9.6. 
* gnu/packages/python.scm (python-jinja2): Update to 2.9.6.
[arguments]: Add build phase "delete-incompatible-files".
 2017-08-30 17:31:59 +02:00
Ricardo Wurmus e7c76b0661
gnu: Add python-lzstring. 
* gnu/packages/compression.scm (python-lzstring, python2-lzstring): New
variables.
 2017-08-30 17:31:59 +02:00
Kei Kebreau b9319c1e22
gnu: hyperrogue: Update to 10.0g. 
* gnu/packages/games.scm (hyperrogue): Update to 10.0g.
 2017-08-30 07:43:24 -04:00
Arun Isaac a00379e7dc
gnu: Add linkchecker. 
* gnu/packages/web.scm (linkchecker): New variable.
 2017-08-30 12:53:39 +05:30
Thomas Danckaert c93ffc11d0
gnu: kdevelop: Update to 5.1.2. 
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.2.
 2017-08-30 09:20:53 +02:00
Thomas Danckaert e0fbf37350
gnu: coda: Update to 2.18.2. 
* gnu/packages/maths.scm (coda): Update to 2.18.2.
 2017-08-30 09:20:52 +02:00
Stefan Reichör f3f82d1d1f
gnu: Add fzy. 
* gnu/packages/shellutils.scm (fzy): New variable.
 2017-08-30 09:20:52 +02:00
Rutger Helling 9dd14f1e08
gnu: wine: Update to 2.0.2. 
* gnu/packages/wine.scm (wine): Update to 2.0.2.
 2017-08-30 09:20:52 +02:00
Carlo Zancanaro 13035eb2de
gnu: electrum: Update to 2.9.3. 
* gnu/packages/finance.scm (electrum): Update to 2.9.3.
[inputs]: Add python2-pyaes, python2-pysocks. Remove python2-slowaes.
 2017-08-30 09:20:52 +02:00
Carlo Zancanaro 7a276cd945
gnu: Add python-pyaes. 
* gnu/packages/python.scm (python-pyaes, python2-pyaes): New variables.
 2017-08-30 09:20:52 +02:00
Carlo Zancanaro 07e62ae1c2
gnu: Add python-pysocks. 
* gnu/packages/python.scm (python-pysocks, python2-pysocks): New variables.
 2017-08-30 09:20:45 +02:00
Tobias Geerinckx-Rice b85a66b4d5
gnu: dtach: Install man page. 
* gnu/packages/screen.scm (dtach)[arguments]: Install the dtach(1) man page.
 2017-08-30 04:45:43 +02:00
Tobias Geerinckx-Rice 249ab8cc3e
gnu: nginx: Install man page. 
* gnu/packages/web.scm (nginx)[arguments]: Install the nginx(8) man page,
and add a comment about the non-GNU configure script.
 2017-08-30 03:24:19 +02:00
Kei Kebreau 3c8ba11a97
Update e-mail for Kei Kebreau. 
* .mailmap: Map kei@openmailbox.org to current address.
* gnu/local.mk: Replace kei@openmailbox.org to current address.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnustep.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/hexedit.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/web-browsers.scm: Likewise.
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
 2017-08-29 20:13:24 -04:00
Tobias Geerinckx-Rice b1c699c4c0
gnu: perl-tk: Update to 804.034. 
* gnu/packages/tcl.scm (perl-tk): Update to 804.034.
 2017-08-29 23:40:09 +02:00
Tobias Geerinckx-Rice 77217b4393
gnu: font-mathjax, js-mathjax: Remove hard-coded version. 
* gnu/package-s/javascript.scm (font-mathjax, js-mathjax)[arguments]: Re-use
font-mathjax's ‘version’ field instead of duplicating the version number.
 2017-08-29 23:40:09 +02:00
Tobias Geerinckx-Rice d6a7268bae
gnu: font-mathjax: Update to 2.7.2. 
* gnu/packages/javascript.scm (font-mathjax): Update to 2.7.2.
 2017-08-29 23:40:09 +02:00
Tobias Geerinckx-Rice d3f0e09882
gnu: tiled: Update to 1.0.3. 
* gnu/packages/game-development.scm (tiled): Update to 1.0.3.
 2017-08-29 23:40:08 +02:00
Efraim Flashner 08cba8cca4
gnu: libgcrypt: Fix CVE-2017-0379. 
* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New variable.
 2017-08-29 23:32:16 +03:00
R H 0ae32da8d6
gnu: qtox: Update to 1.11.0. 
* gnu/packages/messaging.scm (qtox): Update to 1.11.0.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-30 01:18:50 +05:30
Christopher Baines 02654c47b2
gnu: Escape @ in the perl-importer package description. 
@EXPORT is interpreted as a texinfo command, therefore the @ needs
escaping. This was causing a test failure in the guix-package.sh file.

* gnu/packages/perl.scm (perl-importer)[description]: Escape @.
 2017-08-29 20:15:46 +01:00
Andy Wingo 69dcad33c8
gnu: emacs-lua-mode: Update to current git. 
* gnu/packages/emacs.scm (emacs-lua-mode): Update; fixes a very annoying bug
with syntax highlighting of multi-line strings.
 2017-08-29 19:52:16 +02:00
Danny Milosavljevic 84d9abe450
gnu: Add python-pyalsaaudio. 
* gnu/packages/audio.scm (python-pyalsaaudio, python2-pyalsaaudio): New
variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-29 20:06:12 +08:00
Efraim Flashner 47deafb81c
gnu: font-gnu-unifont: Update to 10.0.06. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.06.
 2017-08-29 12:38:12 +03:00
Nicolas Goaziou 8b618c79e0
gnu: emacs-org: Update to 20170828 
* gnu/packages/emacs.scm (emacs-org): Update to 20170828 (a.k.a. 9.0.10).
 2017-08-28 16:37:12 +02:00
Efraim Flashner 92cc6a5801
gnu: gnupg: Clean up arguments. 
* gnu/packages/gnupg.scm (gnupg)[arguments]: Shorten the
'patch-test-paths phase.
 2017-08-28 17:25:00 +03:00
Efraim Flashner e184de5748
gnu: gnupg: Update to 2.2.0. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.0.
[arguments]: Add flag to run more tests.
 2017-08-28 17:24:58 +03:00
Ricardo Wurmus 174fbd5f3b
gnu: r-minimal: Remove timestamp from man page. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Adjust
"build-reproducibly" phase to prevent the bundled help2man script from
printing the current month and year.
 2017-08-28 15:51:05 +02:00
Efraim Flashner af9bb4cab8
gnu: pspp: Update to 1.0.1. 
* gnu/packages/statistics.scm (pspp): Update to 1.0.1.
 2017-08-28 14:44:41 +03:00
Efraim Flashner 475b99fa5c
gnu: jemalloc: Update to 5.0.1. 
* gnu/packages/jemalloc.scm (jemalloc): Update to 5.0.1.
[inputs]: Add perl.
 2017-08-28 11:53:20 +03:00
Ludovic Courtès a881a40cea
gnu: emacs-nix-mode: Move to package-management.scm. 
Reported by Christopher Baines.
This fixes a top-level reference among mutually-dependent modules.

* gnu/packages/emacs.scm (emacs-nix-mode): Move to...
* gnu/packages/package-management.scm (emacs-nix-mode): ... here.
 2017-08-28 09:56:33 +02:00
Efraim Flashner 15d61488a6
gnu: xf86-video-freedreno: Add missing input. 
* gnu/packages/xorg.scm (xf86-video-freedreno)[inputs]: Add zlib.
 2017-08-28 10:14:25 +03:00
Leo Famulari 9baa969758
gnu: libzip: Fix CVE-2017-12858. 
* gnu/packages/patches/libzip-CVE-2017-12858.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/compression.scm (libzip)[source]: Use it.
 2017-08-27 19:51:45 -04:00
Tobias Geerinckx-Rice 152fc9594e
gnu: srt2vtt: Update source URL. 
* gnu/packages/video.scm (srt2vtt)[source]: Fetch sources from new URL.
 2017-08-28 01:44:44 +02:00
Leo Famulari 51988e3a03
gnu: Give descriptive file-names for some Git sources. 
* gnu/packages/java.scm (classpath-devel)[source]: Set the file-name.
* gnu/packages/guile.scm (guile-for-guile-emacs,
guile-syntax-highlight)[source]: Likewise.
 2017-08-27 18:24:50 -04:00
Leo Famulari 5f13bf0972
gnu: Fetch several Git sources over HTTPS. 
* gnu/packages/admin.scm (interrobang)[source]: Use HTTPS URL.
* gnu/packages/audio.scm (ardour)[source]: Likewise.
* gnu/packages/embedded.scm (libjaylink, openocd)[source]: Likewise.
* gnu/packages/gnome.scm (byzanz)[source]: Likewise.
* gnu/packages/gnunet.scm (guile-gnunet)[source]Likewise.
* gnu/packages/java.scm (classpath)[source]: Likewise.
* gnu/packages/microcom.scm (microcom)[source]: Likewise.
* gnu/packages/python.scm (python-axolotl-curve25519)[source]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[source]: Likewise.
* gnu/packages/shells.scm (rc)[source]: Likewise.
* gnu/packages/web.scm (libwebsockets)[source]: Use new source URL.
 2017-08-27 18:24:49 -04:00
Tobias Geerinckx-Rice ad539230f1
gnu: youtube-dl: Update to 2017.08.27.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.27.1.
 2017-08-27 22:58:19 +02:00
Tobias Geerinckx-Rice c10d502423
gnu: iodine: Fix path to ifconfig. 
* gnu/packages/networking.scm (iodine)[arguments]: Fix path to ifconfig.
 2017-08-27 22:23:51 +02:00
Leo Famulari 01f248b606
gnu: filezilla: Update to 3.27.1. 
* gnu/packages/ftp.scm (filezilla): Update to 3.27.1.
 2017-08-27 16:04:31 -04:00
Leo Famulari a9af060e5d
gnu: libfilezilla: Update to 0.10.1. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.10.1.
[native-inputs]: Add pkg-config.
 2017-08-27 16:04:30 -04:00
Leo Famulari 1c059a6e16
gnu: wxwidgets: Update to 3.0.3. 
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.3.
[source]: Remove 'wxwidgets-fix-windowGTK.patch'.
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-27 16:04:25 -04:00
Andy Wingo 2999dcd5b7
gnu: gnome: Install some GStreamer plugins. 
* gnu/packages/gnome.scm (gnome): Add gst-plugins-base and gst-plugins-good.
This will allow stock GNOME installs to play Ogg Vorbis files, among other
things.  It will also ensure that GST_PLUGIN_SYSTEM_PATH is set to a sensible
value when GNOME is installed to the system instead of the user profile.
 2017-08-27 20:59:46 +02:00
Andy Wingo 39c853bd61
gnu: totem: Wrap environment for thumbnailer. 
* gnu/packages/gnome.scm (totem): Wrap thumbnailer also in environment that
  sets GST_PLUGIN_SYSTEM_PATH.
 2017-08-27 20:59:35 +02:00
Efraim Flashner ff16170ab9
gnu: nano: Update to 2.8.7. 
* gnu/packages/nano.scm (nano): Update to 2.8.7.
 2017-08-27 16:29:37 +03:00
Marius Bakke ebd181138e
gnu: perl: Work around more "dotless @INC" build failures. 
* gnu/packages/perl.scm (perl-unicode-collate)[arguments]: Add
'set-perl-search-path' phase.
* gnu/packages/xorg.scm (perl-x11-xcb)[arguments]: Likewise.
 2017-08-27 15:07:21 +02:00
Marius Bakke 88d5889c40
gnu: perl-www-opensearch: Provide Module::Install. 
* gnu/packages/web.scm (perl-www-opensearch)[native-inputs]: Add PERL-MODULE-INSTALL.
 2017-08-27 15:07:21 +02:00
Marius Bakke 522f199562
gnu: perl-xml-atom: Update to 0.42. 
* gnu/packages/xml.scm (perl-xml-atom): Update to 0.42.
[arguments]: Add 'set-perl-search-path' phase.
[native-inputs]: Add PERL-HTML-TAGSET and PERL-MODULE-BUILD-TINY.
 2017-08-27 15:07:21 +02:00
Marius Bakke 9978567460
gnu: babl: Update to 0.1.30. 
* gnu/packages/gimp.scm (babl): Update to 0.1.30.
 2017-08-27 15:07:21 +02:00
Marius Bakke b45c050545
gnu: Remove unneeded import. 
* gnu/packages/engineering.scm: Don't import (srfi srfi-1) in top scope.
 2017-08-27 15:07:21 +02:00
Marius Bakke fab46af832
gnu: tdb: Update to 1.3.15. 
* gnu/packages/databases.scm (tdb): Update to 1.3.15.
 2017-08-27 15:07:21 +02:00
Efraim Flashner 6909c24093
gnu: enlightenment: Update to 0.21.9. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.9.
 2017-08-27 15:53:13 +03:00
Kei Kebreau ab11563797
gnu: xauth: Enable tests. 
* gnu/packages/xorg.scm (xauth)[arguments]: Enable tests.
[native-inputs]: Add cmdtest.
 2017-08-26 15:40:55 -04:00
Kei Kebreau cd669fdeb1
gnu: Add cmdtest. 
* gnu/packages/check.scm (cmdtest): New variable.

Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-26 15:26:45 -04:00
Marius Bakke 72e2815d18
Merge branch 'core-updates' 2017-08-26 15:15:49 +02:00
Andy Wingo c20cd0d24d
gnu: gnome: Depend on xdg-user-dirs. 
* gnu/packages/gnome.scm (gnome): Add xdg-user-dirs dependency.  The presence
  of the autostart file in /run/current-system/profile/etc/xdg should cause
  xdg-user-dirs to be run when a user logs in, ensuring that they have
  ~/Pictures and other well-known user directories.
 2017-08-26 13:37:30 +02:00
Andy Wingo b9bf08f058
gnu: Add xdg-user-dirs. 
* gnu/packages/freedesktop.scm (xdg-user-dirs): New public variable.
 2017-08-26 13:37:19 +02:00
Julien Lepiller 446695775d
gnu: Add radare2. 
* gnu/packages/engineering.scm (radare2): New variable.
 2017-08-26 13:01:36 +02:00
Julien Lepiller f70be0113f
gnu: Add python-capstone. 
* gnu/packages/engineering.scm (python-capstone, python2-capstone): New
variables.
 2017-08-26 13:01:32 +02:00
Julien Lepiller 6febda9443
gnu: Add capstone. 
* gnu/packages/engineering.scm (capstone): New variable.
 2017-08-26 13:01:11 +02:00
Oleg Pykhalov d987a006dc
gnu: youtube-dl: Update to 2017.08.23. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.23.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-26 13:35:44 +05:30
宋文武 acf7a958a6
gnu: pv: Update to 1.6.6. 
* gnu/packages/pv.scm (pv): Update to 1.6.6.
 2017-08-26 14:09:05 +08:00
Mark H Weaver 828f0109ee
gnu: linux-libre: Update to 4.12.9. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.9.
(%linux-libre-hash): Update hash.
 2017-08-25 23:53:32 -04:00
Mark H Weaver 50e34c608e
gnu: linux-libre@4.9: Update to 4.9.45. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.45.
 2017-08-25 23:52:58 -04:00
Mark H Weaver cd2247cccd
gnu: linux-libre@4.4: Update to 4.4.84. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.84.
 2017-08-25 23:52:14 -04:00
Marius Bakke 2f837cf7fe
gnu: perl: Add more missing dependencies on Module::Install. 
* gnu/packages/databases.scm (perl-dbix-class, perl-dbix-class-cursor-cached,
  perl-dbix-class-introspectablem2m,
  perl-dbix-class-schema-loader)[native-inputs]: Add PERL-MODULE-INSTALL.
* gnu/packages/web.scm (perl-catalyst-action-renderview,
  perl-catalyst-action-rest, perl-catalyst-authentication-store-dbix-class,
  perl-catalyst-component-instancepercontext, perl-catalyst-model-dbic-schema,
  perl-catalyst-plugin-authentication,
  perl-catalyst-plugin-authorization-roles, perl-catalyst-plugin-configloader,
  perl-catalyst-plugin-session, perl-catalyst-plugin-session-state-cookie,
  perl-catalyst-plugin-stacktrace, perl-catalyst-plugin-static-simple,
  perl-catalyst-traitfor-request-proxybase, perl-catalyst-view-download,
  perl-catalyst-view-json, perl-catalystx-script-server-starman,
  perl-test-www-mechanize, perl-test-www-mechanize-catalyst)[native-inputs]:
  Likewise.
* gnu/packages/xorg.scm (perl-x11-xcb)[native-inputs]: Likewise.
 2017-08-25 22:24:10 +02:00
Marius Bakke a21db79e52
gnu: perl-catalyst-runtime: Update to 5.90115. 
* gnu/packages/web.scm (perl-catalyst-runtime): Update to 5.90115.
[native-inputs]: Add PERL-MODULE-INSTALL.
 2017-08-25 22:23:53 +02:00
Leo Famulari 35131babc1
gnu: go: Update to 1.9. 
* gnu/packages/golang.scm (go-1.8): Replace with ...
(go-1.9): ... new variable.
[arguments]: Adjust the pre-build phase accordingly.
 2017-08-25 12:28:58 -04:00
Andy Wingo e0e6756fbd
gnu: gdm: Fix environment of worker processes and sessions. 
* gnu/packages/gnome.scm (gdm): Get X server path from GDM_X_SERVER
environment variable, and make sure this variable is propagated to internal
sub-processes.  Launch sessions with a reasonable XDG_CONFIG_DIRS setting.
Get the custom GDM conf from the current system's profile.
 2017-08-25 16:01:56 +02:00
Andy Wingo 957dbc0a4d
gnu: gdm: Use proper elogind check, and wrap environment. 
* gnu/packages/gnome.scm (gdm): Use glib-or-gtk-build-system to make sure the
schemas are available to GDM.  Install gdm to /bin to make this happen.  Use a
proper elogind check.
 2017-08-25 16:01:56 +02:00
Andy Wingo af37e6bbd4
gnu: gdm: Look for sessions in /run/current-system. 
* gnu/packages/gnome.scm (gdm): Fix search paths for system sessions.  Use
  /var as localstatedir.  Set a more sensible default path for user sessions.
 2017-08-25 16:01:56 +02:00
Andy Wingo e76008dbc8
gnu: accountsservice: Properly reference shadow. 
* gnu/packages/freedesktop.scm (accountsservice): Fix references to binaries
  provided by the shadow package.
 2017-08-25 16:01:45 +02:00
Efraim Flashner cb8b14f182
gnu: parallel: Update to 20170822. 
* gnu/packages/parallel.scm (parallel): Update to 20170822.
 2017-08-25 09:15:12 +03:00
Mark H Weaver 1934769ba1
gnu: libmikmod: Add fallback source URL, needed for older versions. 
* gnu/packages/sdl.scm (libmikmod)[source]: Add a fallback source URL where
older versions are kept.
 2017-08-25 02:08:52 -04:00
Ricardo Wurmus 0b4f40e4fa
gnu: yoshimi: Update to 1.5.3. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.3.
 2017-08-25 04:55:05 +02:00
Ricardo Wurmus 5cff549c60
gnu: zynaddsubfx: Update to 3.0.2. 
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.2.
 2017-08-25 04:51:07 +02:00
Ricardo Wurmus 44aca1a3e5
gnu: guile-xcb: Update source URL. 
* gnu/packages/guile-wm.scm (guile-xcb)[source]: Use archived tarball URL.
 2017-08-25 02:15:14 +02:00
Ludovic Courtès 649c438c23
gnu: font-mathjax: Move to javascript.scm. 
This avoids cross-module top-level references.

* gnu/packages/fonts.scm (font-mathjax): Move to...
* gnu/packages/javascript.scm (font-mathjax): ... here.  New variable.
 2017-08-24 23:55:51 +02:00
Ludovic Courtès 87f057c46e
gnu: font-go: Remove reference to 'go-1.4'. 
This avoids circular references at the top level.

* gnu/packages/fonts.scm (font-go)[license]: Remove reference to
GO-1.4.
 2017-08-24 23:55:51 +02:00
Stefan Reichör 84342e2fa9
gnu: Add honcho. 
* gnu/packages/python.scm (python-honcho, python2-honcho): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-24 21:27:23 +02:00
Marius Bakke a251838d67
gnu: maim: Update to 5.4.68. 
* gnu/packages/xdisorg.scm (maim): Update to 5.4.68.
 2017-08-24 21:21:04 +02:00
Marius Bakke 8752fa6cba
gnu: slop: Update to 7.3.49. 
* gnu/packages/xdisorg.scm (slop): Update to 7.3.49.
 2017-08-24 21:21:04 +02:00
Ricardo Wurmus 3f8efbb9a4
gnu: guile-wm: Update source URL. 
* gnu/packages/guile-wm.scm (guile-wm)[source]: Use archived URL.
 2017-08-24 20:42:45 +02:00
Thomas Danckaert 17e56dac12
gnu: libreoffice: Fix icons, enable liblangtag. 
* gnu/packages/libreoffice.scm (libreoffice) [inputs]: Add liblangtag.
  [arguments]: Correct icon names in .desktop files; copy desktop files &
  icons for libreoffice-math and libreoffice-startcenter; enable parallel
  build; enable liblangtag.
 2017-08-24 19:52:16 +02:00
Tobias Geerinckx-Rice 5cdb0cd380
gnu: dovecot: Update to 2.2.32. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.32.
 2017-08-24 16:38:47 +02:00
Efraim Flashner 5fc9b6c108
gnu: lollypop: Use pseudo meson build system. 
* gnu/packages/gnome.scm (lollypop)[arguments]: Disable tests. Delete
configure phase, replace build and install phase with custom phases.
[native-inputs]: Add ninja.
[propagated-inputs]: Move gst-plugins-base ...
[inputs]: ... to here. Add meson.
 2017-08-24 15:33:13 +03:00
Hartmut Goebel e3c13d044f
gnu: libksysguard: Enable more tests (not all working yet). 
* gnu/packages/kde.scm (libksysguard)[arguments]
  <#:phases>'check-setup': Set QT_QPA_PLATFORM=offscreen.
  <#:phases>'check': Enable all tests except of the failing one.
 2017-08-24 12:32:34 +02:00
Arun Isaac 2d6da7942a
gnu: python2-ttystatus: Update to 0.35. 
* gnu/packages/python.scm (python2-ttystatus): Update to 0.35.
 2017-08-24 14:28:41 +05:30
Arun Isaac f6c5821530
gnu: cliapp: Update to 1.20170823. 
* gnu/packages/python.scm (python2-cliapp): Update to 1.20170823.
 2017-08-24 14:20:45 +05:30
Efraim Flashner c47048c328
gnu: datamash: Update to 1.2. 
* gnu/packages/datamash.scm (datamash): Update to 1.2.
 2017-08-24 10:35:00 +03:00
Efraim Flashner f81039058c
gnu: qemu: Fix CVE-2017-12809. 
* gnu/packages/virtualization.scm (qemu)[source]: Add patch.
* gnu/packages/patches/qemu-CVE-2017-12809.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-23 21:56:55 +03:00
Efraim Flashner f00e328fd3
gnu: openjpeg: Fix CVE-2017-12982. 
* gnu/packages/image.scm (openjepg)[source]: Add patch.
* gnu/packages/patches/openjpeg-CVE-2017-12982.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-23 21:07:07 +03:00
Ricardo Wurmus d7eea7d7ae
gnu: python-scikit-learn: Update to 0.19.0. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.19.0.
 2017-08-23 17:31:54 +02:00
Rutger Helling cc527b5048
gnu: xpra: Update to 2.1.1. 
* gnu/packages/xorg.scm (xpra): Update to 2.1.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-23 20:38:09 +08:00
Rutger Helling 8a7f958ed9
gnu: higan: Update to 104. 
* gnu/packages/games.scm (higan): Update to 104.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-23 20:24:15 +08:00
Rutger Helling 56cdca9537
gnu: retroarch: Update to 1.6.7. 
* gnu/packages/games.scm (retroarch): Update to 1.6.7.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-23 20:13:41 +08:00
Thomas Danckaert 35e657017c
gnu: id3lib: Remove bundled zlib. 
* gnu/packages/mp3.scm (id3lib)[source]: Remove bundled zlib.
[inputs]: Add zlib.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-23 19:58:26 +08:00
Christopher Baines 903e051a71
gnu: libvirt: Wrap with iproute and qemu. 
libvirtd runs qemu if it's configured to use it, and also uses the ip command.

* gnu/packages/virtualization.scm (libvirt)[arguments]: Add wrap-libvirtd
  phase.
 2017-08-23 12:44:21 +01:00
Christopher Baines 0577a3fd92
gnu: Build the shared library for yaml-cpp. 
* gnu/packages/serialization.scm (yaml-cpp)[arguments]: Add
  -DBUILD_SHARED_LIBS=ON to #:configure-flags.
 2017-08-23 10:07:22 +01:00
Marius Bakke 4e58740aff
gnu: whois: Update to 5.2.18. 
* gnu/packages/networking.scm (whois): Update to 5.2.18.
 2017-08-22 23:17:14 +02:00
Marius Bakke 2e4569829e
gnu: Add f2fs-tools. 
* gnu/packages/linux.scm (f2fs-tools): New variable.
 2017-08-22 23:13:42 +02:00
Marius Bakke 7ac2cab8c9
gnu: Add icedtea-web. 
* gnu/packages/java.scm (icedtea-web): New variable.
 2017-08-22 23:02:13 +02:00
ng0 77a0354a36
gnu: gnurl: Update to 7.55.1-3. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1-3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-08-22 21:52:05 +02:00
Ricardo Wurmus bd3a184613
gnu: r-minimal: Do not compress serialized files. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.

Fixes <https://bugs.gnu.org/28157>.
 2017-08-22 16:24:24 +02:00
Ricardo Wurmus 6be54a8751
gnu: Add rmath-standalone. 
* gnu/packages/statistics.scm (rmath-standalone): New variable.
 2017-08-22 16:24:24 +02:00
Efraim Flashner 94b179c675
gnu: gst-plugins-bad: Build with wayland support. 
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add wayland.
 2017-08-22 17:04:39 +03:00
Efraim Flashner fe535d81ae
gnu: libraw: Update to 0.18.2. 
* gnu/packages/photo.scm (libraw): Update to 0.18.2.
[source, home-page]: Use https.
 2017-08-22 16:57:59 +03:00
Z. Ren 0e4d822e3f
gnu: skalibs: Build reproducibly. 
* gnu/packages/skarnet.scm (skalibs)[arguments]: Add #:phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-22 15:19:49 +02:00
Ludovic Courtès c15374e03d
gnu: libjpeg-turbo: Build reproducibly. 
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add #:configure-flags.

Co-authored-by: Z. Ren <zren@dlut.edu.cn>
 2017-08-22 15:19:49 +02:00
Thomas Danckaert 1206c95a49
gnu: python-netcdf4: Update to 1.2.9. 
* gnu/packages/python.scm (python-netcdf4): Update to 1.2.9.
 2017-08-22 09:02:32 +02:00
Thomas Danckaert 5c78db6222
gnu: python-h5py: Update to 2.7.0. 
* gnu/packages/python.scm (python-h5py): Update to 2.7.0.
 2017-08-22 09:02:24 +02:00
Efraim Flashner 285e18e9ae
gnu: terminology: Update to 1.1.0. 
* gnu/packages/enlightenment.scm (terminology): Update to 1.1.0.
[source]: Remove bundled fonts and references to them.
[native-inputs]: Add gettext-minimal.
 2017-08-22 09:49:27 +03:00
Oleg Pykhalov 61b31ac46f
gnu: Update emacs-rainbow-mode to 0.13. 
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 0.13.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-22 00:00:56 +02:00
Oleg Pykhalov 86a9b1633c
gnu: python-internetarchive: Update to 1.7.1. 
* gnu/packages/web.scm (python-internetarchive): Update to 1.7.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-22 00:00:56 +02:00
Tobias Geerinckx-Rice 58f3d45996
gnu: python-marshmallow: Update to 3.0.0b3. 
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b3.
 2017-08-21 22:54:38 +02:00
Tobias Geerinckx-Rice 4ecab114fd
gnu: python-pylast: Update to 1.9.0. 
* gnu/packages/python.scm (python-pylast): Update to 1.9.0.
 2017-08-21 22:54:38 +02:00
Tobias Geerinckx-Rice 3592a57255
gnu: lollypop: Update to 0.9.244. 
* gnu/packages/gnome.scm (lollypop): Update to 0.9.244.
 2017-08-21 22:54:37 +02:00
Tobias Geerinckx-Rice 9f9d2a723f
gnu: gspell: Update to 1.4.2. 
* gnu/packages/gnome.scm (gspell): Update to 1.4.2.
 2017-08-21 22:54:37 +02:00
Marius Bakke 3ce16aeac5
gnu: imagemagick: Update to 6.9.9-9. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-9.
 2017-08-21 22:48:44 +02:00
Marius Bakke 51eecee7b9
gnu: feh: Update to 2.19.3. 
* gnu/packages/image-viewers.scm (feh): Update to 2.19.3.
 2017-08-21 22:48:44 +02:00
Tobias Geerinckx-Rice 88648855f8
gnu: perl-net-dns: Update to 1.12. 
* gnu/packages/networking.scm (perl-net-dns): Update to 1.12.
 2017-08-21 17:38:08 +02:00
Tobias Geerinckx-Rice 46057c0a3f
gnu: zstd: Update to 1.3.1. 
* gnu/packages/compression.scm (zstd): Update to 1.3.1.
 2017-08-21 17:38:07 +02:00
Dave Love 6c171ff47c
gnu: openmpi: Configure without vampirtrace. 
VT is obsoleted by scorep (not currently packaged) and disabling it reduces
the closure considerably.

* mpi.scm (openmpi)[arguments]: Configure without vampirtrace.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:54 +02:00
Dave Love df981d8b36
gnu: openmpi: Modify configuration to reduce closure. 
devel-headers are only for building MCA components, produce a large
closure and aren't normally packaged.  Only the affinity component of
mpi-ext is useful.

* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure
--with-devel-headers and --enable-mpi-ext=all.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:54 +02:00
Dave Love 0d97d3cbff
gnu: openmpi: Remove references to compiler pathnames in "_info" programs. 
This reduces the closure greatly, but note that the Fortran .mod files are
gfortran version-specific, so there should probably be development packages
for each incompatible version.  (The runtime is supposed to be more-or-less
version-independent unless the libgfortran soname changes.)  There may still
be a case for a separate runtime output.

* gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:54 +02:00
Dave Love 84bf845abc
gnu: valgrind: Add separate "doc" output. 
* gnu/packages/valgrind.scm (valgrind)[outputs]: New field.
[arguments]: Add 'install-doc' phase.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2017-08-21 17:04:54 +02:00
Dave Love 327404aeaa
gnu: openmpi: Remove "static" output. 
--enable-static removes dynamically-loaded MCA components.

* gnu/packages/mpi.scm (openmpi)[outputs]: Remove field.
[arguments]: Don't configure with --enable-static; remove
'move-static-libraries' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:54 +02:00
Dave Love 685bef2bd1
gnu: openmpi: Add separate variant with thread-multiple support. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove
"--enable-mpi-thread-multiple".
(openmpi-thread-multiple): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2017-08-21 17:04:54 +02:00
Theodoros Foradis cf684d87d7
gnu: z3: Build Python bindings. 
* gnu/packages/maths.scm (z3): Add python bindings.
[build-system]: Change to cmake-build-system.
[arguments]: Remove "changedir" phase.  Add "bootstrap" and
"make-test-z3" phases; replace the "check" phase.
Add #:configure-flags.  Remove #:test-target.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:53 +02:00
Efraim Flashner bd2e321061
gnu: augeas: Update to 1.8.1. Fixes CVE-2017-7555. 
* gnu/packages/augeas.scm (augeas): Update to 1.8.1.
 2017-08-21 16:02:23 +03:00
Marius Bakke 2718a9cd09
Merge branch 'master' into core-updates 2017-08-21 02:40:37 +02:00
ng0 e904de7ec1
gnu: gnurl: Update to 7.55.1. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-08-21 01:05:06 +02:00
Efraim Flashner 1dbd34329b
gnu: vifm: Update to 0.9. 
* gnu/packages/vim.scm (vifm): Update to 0.9.
[source]: Add alternate uri.
[arguments]: Remove build timestamp. Add phase to install vim plugins
into vim plugin directory. Patch more shebangs.
 2017-08-20 23:23:17 +03:00
Efraim Flashner bda6c35093
gnu: pspp: Update to 1.0.0. 
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
 2017-08-20 21:44:47 +03:00
Marius Bakke 9c4ce3afac
gnu: perl-test-trap: Update to 0.3.2. 
* gnu/packages/perl.scm (perl-test-trap): Update to 0.3.2.
[source, version]: Remove 'v' prefix from version field.
 2017-08-20 17:33:16 +02:00
Marius Bakke 7295a0c020
gnu: perl-test-trap: Add missing dependency on Test::Simple. 
* gnu/packages/perl.scm (perl-test-trap)[native-inputs]: Add PERL-TEST-SIMPLE.
 2017-08-20 17:33:16 +02:00
Tobias Geerinckx-Rice 29a3325708
gnu: bundler: Update to 1.15.4. 
* gnu/packages/ruby.scm (bundler): Update to 1.15.4.
 2017-08-20 16:41:39 +02:00
Tobias Geerinckx-Rice 3fa1b08213
gnu: limnoria: Update to 2017.08.18. 
* gnu/packages/irc.scm (limnoria): Update to 2017.08.18.
 2017-08-20 16:41:39 +02:00
Kei Kebreau 6d7d9d9507
gnu: graphicsmagick: Fix CVE-2017-{12935,12936,12937}. 
* gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Use them.
 2017-08-20 08:35:45 -04:00
Ricardo Wurmus a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which". 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
 2017-08-20 14:00:04 +02:00
Ricardo Wurmus 92a1cb9285
gnu: powertabeditor: Update to 2.0.0-alpha10. 
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha10.
[arguments]: Remove "set-target-directories" phase; disable additional tests.
 2017-08-20 14:00:04 +02:00
Ricardo Wurmus 17cddc1714
gnu: Add r-annotationfilter. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
 2017-08-20 14:00:04 +02:00
Andy Wingo 96d36f385c
gnu: Add gnome-default-applications. 
* gnu/packages/gnome.scm (gnome-default-applications): New public variable.
(gnome): Propagate gnome-default-applications so that nautilus is associated
with folders, not baobab.
 2017-08-20 13:11:06 +02:00
Andy Wingo a9dbefdc9d
gnu: gnome: Propagate font-dejavu. 
* gnu/packages/gnome.scm (gnome): Add font-dejavu to propagated inputs, to
  provide a better default for "Monospace".  Otherwise the terminal looks
  horrible and defaults to Nimbus Mono, a Courier-like face.
 2017-08-20 13:10:56 +02:00
Andy Wingo 50631fe933
gnu: gobby: Re-add Gobby 0.4. 
* gnu/packages/gobby.scm (gobby-0.4): New variable.
 2017-08-20 11:30:43 +02:00
Andy Wingo 63ad9b80c7
gnu: gnome: Propagate more packages. 
* gnu/packages/gnome.scm (gnome): Add additional dependencies, inspired by
  Debian's "gnome-core" package.
 2017-08-20 11:16:56 +02:00
Arun Isaac 97291c0c7c
gnu: gobby: Update to 0.5.0. 
* gnu/packages/gobby.scm (gobby): Update to 0.5.0.
[inputs]: Remove libnet6 and obby. Add libinfinity. Sort.
[arguments]: Add move-executable phase.
 2017-08-20 10:52:56 +05:30
Arun Isaac 6a84ec8eb3
gnu: Add libinfinity. 
* gnu/packages/gobby.scm (libinfinity): New variable.
 2017-08-20 10:52:55 +05:30
Leo Famulari 36ed934dfe
gnu: icedtea@3: Update to 3.5.1. 
* gnu/packages/java.scm (icedtea-8): Update to 3.5.1.
 2017-08-19 18:50:04 -04:00
Leo Famulari 0c2e2b660d
gnu: icedtea@2: Update to 2.6.11 [security fixes]. 
Fixes CVE-2017-{10053,10067,10074,10081,10087,10089,10090,10096,10101,10102,
10107,10108,10109,10110,10111,10115,10116,10118,10135,10074,10176}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.11.
 2017-08-19 18:50:01 -04:00
Thomas Danckaert 7b87132f6e
gnu: libreoffice: Update to 5.3.5.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.5.2.
 2017-08-19 22:46:03 +02:00
Efraim Flashner 128c9b9269
gnu: perl-www-mechanize: Update source uri. 
* gnu/packages/web.scm (perl-www-mechanize)[source]: Update to new uri.
 2017-08-19 21:52:22 +03:00
Marius Bakke 7eb09e39ed
gnu: perl-net-server: Update to 2.009. 
* gnu/packages/web.scm (perl-net-server): Update to 2.009.
 2017-08-19 16:43:38 +02:00
Marius Bakke 68d5906c06
gnu: perl-www-mechanize: Update to 1.86. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.86.
[native-inputs]: Add PERL-TEST-DEEP, PERL-TEST-FATAL, PERL-TEST-OUTPUT and
PERL-TEST-WARNINGS.
[propagated-inputs]: Add PERL-HTML-TREE.
 2017-08-19 16:43:37 +02:00
Marius Bakke f87c1107d6
gnu: perl: Work around more "dotless @INC" build issues. 
* gnu/packages/perl.scm (perl-hash-fieldhash,
  perl-string-camelcase)[arguments]: Add 'set-perl-search-path' phase.
 2017-08-19 16:43:37 +02:00
Marius Bakke 1cd5f1776d
gnu: perl-moosex-types-datetime: Update to 0.13. 
* gnu/packages/perl.scm (perl-moosex-types-datetime): Update to 0.13.
 2017-08-19 16:43:37 +02:00
Marius Bakke 55cca6ac61
gnu: perl-plack-middleware-reverseproxy: Provide Module::Install. 
* gnu/packages/web.scm (perl-plack-middleware-reverseproxy)[native-inputs]:
Add PERL-MODULE-INSTALL.
 2017-08-19 16:43:37 +02:00
Tobias Geerinckx-Rice e121be1e15
gnu: python-netaddr: Update to 0.7.19. 
* gnu/packages/python.scm (python-netaddr): Update to 0.7.19.
 2017-08-19 02:17:43 +02:00
Tobias Geerinckx-Rice b7585ca3b9
gnu: lz4: Update to 1.8.0. 
* gnu/packages/compression.scm (lz4): Update to 1.8.0.  Fix typo in comment.
[source]: Remove patch.
* gnu/packages/patches/lz4-fix-test-failures.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-19 02:17:42 +02:00
Tobias Geerinckx-Rice 00d9124d40
gnu: lz4: Use recommended home page. 
* gnu/packages/compression.scm (lz4)[home-page]: Use lz4.org.
 2017-08-19 02:17:42 +02:00
Tobias Geerinckx-Rice 865aacc9fa
gnu: Remove libgames-support. 
It was simply the old name (and version) of libgnome-games-support.

* gnu/packages/gnome.scm (libgames-support): Remove variable.  Move the
inherited fields...
(libgnome-games-support): ...to here.
 2017-08-19 02:17:41 +02:00
Leo Famulari d9f15d7e48
gnu: newsbeuter: Fix CVE-2017-12904. 
* gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/syndication.scm (newsbeuter)[source]: Use it.
 2017-08-18 17:24:47 -04:00
Marius Bakke 8c0c0c4def
gnu: python-pygit2: Update to 0.26.0. 
* gnu/packages/python.scm (python-pygit2): Update to 0.26.0.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Skip one
more test. Use unittest.skipIf instead of deleting sections.
 2017-08-18 21:33:31 +02:00
Tobias Geerinckx-Rice 1f9c2351d7
gnu: gnome-shell: Update to 3.24.3. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.24.3.
 2017-08-18 14:55:01 +02:00
Tobias Geerinckx-Rice cd5db77151
gnu: gnome-control-center: Update to 3.24.3. 
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.24.3.
 2017-08-18 14:55:01 +02:00
Tobias Geerinckx-Rice d95d6d931e
gnu: gnome-keyring: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.20.1.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 32d00d78dc
gnu: libgnome-games-support: Update to 1.2.2. 
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.2.2.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 9d086c075d
gnu: gjs: Update to 1.48.6. 
* gnu/packages/gnome.scm (gjs): Update to 1.48.6.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 69d0674830
gnu: shotwell: Update to 0.26.3. 
* gnu/packages/gnome.scm (shotwell): Update to 0.26.3.
 2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice 7c94a3599e
gnu: totem-pl-parser: Update to 3.10.8. 
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.10.8.
 2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice 94793c1d0a
gnu: perl-crypt-openssl-bignum: Update to 0.08. 
* gnu/packages/tls.scm (perl-crypt-openssl-bignum): Update to 0.08.
 2017-08-18 14:54:59 +02:00
Thomas Danckaert 598b5481a4
gnu: freerdp: Update inputs. 
* gnu/packages/rdesktop.scm (freerdp) [native-inputs]: Add libxslt, libxml2
  and docbook-xsl.
  [inputs]: Add libjpeg, remove gstreamer, gst-plugins-base, libxml2 and
  libxslt.
  [arguments]: Enable features JPEG and SSE2 (on x86_64), and set up
  docbook-xsl.
 2017-08-18 14:52:35 +02:00
Thomas Danckaert cc81f1c349
gnu: freerdp: Revert to version 1.1. 
* gnu/packages/rdesktop.scm (freerdp) [version, source]: Revert to upstream
  branch 1.1.  [inputs]: Use ffmpeg-2.8.
* gnu/packages/gnome.scm (vinagre): Add patches required to build against
  freerdp branch 1.1.
* gnu/packages/patches/vinagre-revert-1.patch,
  gnu/packages/patches/vinagre-revert-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2017-08-18 14:52:35 +02:00
Efraim Flashner c5a856d551
gnu: xf86-video-siliconmotion: Fix building on aarch64. 
* gnu/packages/xorg.scm (xf86-video-siliconmotion)[source]: Add patch.
* gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-18 15:50:25 +03:00
Efraim Flashner d983a1cb8e
gnu: libksysguard: Update to 5.10.4. 
* gnu/packages/kde.scm (libksysguard ): Update to 5.10.4.
 2017-08-18 15:50:23 +03:00
Efraim Flashner de5a235c79
gnu: kde-framework: Update to 5.37.0. 
* gnu/packages/kde-frameworks.scm (extra-cmake-modules, attica,
bluez-qt, breeze-icons, kapidox, karchive, kcodecs, kconfig,
kcoreaddons, kdbusaddons, kdnssd, kguiaddons, kil8n, kidletime,
kitemmodules, kplotting, ksyntaxhighlighting, kwayland, kwidgetsaddons,
kwindowsystem, modemmanager-qt, networkmanager-qt, oxygen-icons, solid,
sonnet, threadweaver, kauth, kcompletion, kcrash, kimageformats,
kjobwidgets, knotifications, kpackage, kpty, kunitconversion, baloo,
kactivities, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets,
kdeclarative, kded, kdesignerplugin, kdesu, kemoticons, kglobalaccel,
kiconthemes, kinit, kio, knewstuff, knotifyconfig, kparts, kpeople,
krunner, kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui,
kxmlrpcclient, plasma-framework, kde-framworkintegration,
kdelibs4support, khtml, kjs, kjsembed, kmediaplayer, kross): Update to 5.37.0.
(bluez-qt)[arguments]: Disable tests.
(kcodecs, khtml)[native-inputs]: Add gperf.
(ksyntaxhighlighting)[properties]: New field, add upstream-name.
(kimageformats, baloo)[arguments]: Add phase to disable failing test.
(krunner)[inputs]: Add kwindowsystem.
 2017-08-18 15:50:22 +03:00
Efraim Flashner 26ca43bb60
gnu: freeipmi: Update to 1.5.7. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.7.
 2017-08-18 15:50:20 +03:00
Nicolas Goaziou 1286ff6161
gnu: giac-xcas: Update to 1.2.3-57. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-57.
 2017-08-18 14:31:06 +02:00
Arun Isaac c5361b7c3d
gnu: Add rtl-sdr. 
* gnu/packages/ham-radio.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ham-radio.scm (rtl-sdr): New variable.
 2017-08-18 16:54:58 +05:30
Tobias Geerinckx-Rice 2559401037
gnu: youtube-dl: Update to 2017.08.18. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.18.
 2017-08-18 08:11:45 +02:00
Tobias Geerinckx-Rice 2c7321eaa7
gnu: libconfuse: Update to 3.2.1. 
* gnu/packages/wm.scm (libconfuse): Update to 3.2.1.
 2017-08-18 08:11:45 +02:00
Eric Bavier 623cc34cd2
gnu: rpm: Update to 4.13.0.1. 
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.1
[source]: Remove patch.  Use 'version-major+minor' for url.
* gnu/packages/patches/rpm-CVE-2014-8118.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-17 21:39:18 -05:00
Arun Isaac 52d445f130
gnu: Add rss-bridge. 
* gnu/packages/web.scm (rss-bridge): New variable.
 2017-08-18 07:18:04 +05:30
Marius Bakke 961012a0a0
gnu: Add missing import. 
This is a followup to d016b60fa3.

* gnu/packages/networking.scm (gnu): Use (gnu packages glib).
 2017-08-18 00:48:25 +02:00
Dave Love a099570249
gnu: openmpi: Add RDMA and libfabric support. 
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:28 +02:00
Dave Love ae5947b0ef
gnu: Add libfabric. 
* gnu/packages/linux.scm (libfabric): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:28 +02:00
Dave Love 3eb7c00038
gnu: libnl: Add "python2" and "python3" outputs. 
* gnu/packages/linux.scm (libnl)[native-inputs]: Add SWIG and PKG-CONFIG.
[inputs]: Add PYTHON-2 and PYTHON-3.
[outputs]: Add python2, python3.
[arguments]: Add 'install-python' phase.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:27 +02:00
Dave Love d80a47f2f5
gnu: libnl: Add "doc" output. 
* gnu/packages/linux.scm (libnl)[native-inputs]: Add doc origin.
[outputs]: New field.
[arguments]: Add 'install-doc' phase. New field.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:27 +02:00
Nicolas Goaziou d016b60fa3
gnu: wireshark: Update to 2.4.0. 
* gnu/packages/networking.scm (wireshark): Update to 2.4.0.  Add "libssh",
  "libxml2", "qtbase" and "qttools" as inputs.  Remove unused "bison", "flex"
  and "gtk+" inputs.
 2017-08-18 00:17:24 +02:00
Marius Bakke 9fa0c0e6fa
gnu: libmspack: Update to 0.6 [fixes CVE-2017-{6419,11423}]. 
* gnu/packages/compression.scm (libmspack): Update to 0.6.
 2017-08-17 22:32:51 +02:00
Mark H Weaver 2d72ddf529
gnu: linux-libre: Update to 4.12.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.8.
(%linux-libre-hash): Update hash.
 2017-08-17 14:41:18 -04:00
Mark H Weaver 1e070766c0
gnu: linux-libre@4.9: Update to 4.9.44. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.44.
 2017-08-17 14:40:29 -04:00
Mark H Weaver 821f18719d
gnu: linux-libre@4.4: Update to 4.4.83. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.83.
 2017-08-17 14:39:31 -04:00
Manolis Ragkousis e9a599cdce
gnu: Add OpenMW. 
* gnu/packages/game-development.scm (openmw): New variable.
 2017-08-17 19:40:33 +03:00
Manolis Ragkousis 42d0d13de8
gnu: Add mygui. 
* gnu/packages/game-development.scm (mygui): New variable.
 2017-08-17 19:35:28 +03:00
Manolis Ragkousis dd75a9a22c
gnu: Add ogre. 
* gnu/packages/graphics.scm (ogre): New variable.
 2017-08-17 19:11:35 +03:00
Ricardo Wurmus bf3fa99654
gnu: Add r-methylkit. 
* gnu/packages/bioinformatics.scm (r-methylkit): New variable.
 2017-08-17 18:00:17 +02:00
Ricardo Wurmus 8a39e4a553
gnu: sassc: Update to 3.4.5. 
* gnu/packages/web.scm (sassc): Update to 3.4.5.
[arguments]: Add PREFIX to make-flags, disable tests, remove custom install
phase.
 2017-08-17 18:00:17 +02:00
Alex Vong f30ff28b96
gnu: mariadb: Update to 10.1.26 [fixes CVE-2017-{3636,3641,3653}]. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.26.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-08-17 11:40:29 -04:00
Ricardo Wurmus 05e8a3ef0f
gnu: Add r-ksamples. 
* gnu/packages/cran.scm (r-ksamples): New variable.
 2017-08-17 17:26:13 +02:00
Ricardo Wurmus abcb849405
gnu: Add r-suppdists. 
* gnu/packages/cran.scm (r-suppdists): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus 8d22007380
gnu: Add r-energy. 
* gnu/packages/cran.scm (r-energy): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus 6b4a9aec23
gnu: Add r-fitdistrplus. 
* gnu/packages/cran.scm (r-fitdistrplus): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus 521e0703d8
gnu: Add r-limsolve. 
* gnu/packages/cran.scm (r-limsolve): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus a3e36d3772
gnu: Add r-lpsolve. 
* gnu/packages/cran.scm (r-lpsolve): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus 212f612040
gnu: Add r-qvalue. 
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus d4a1e918cb
gnu: Add r-fastseg. 
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus b31e4a9693
gnu: Add r-emdbook. 
* gnu/packages/cran.scm (r-emdbook): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus 97cb349dc1
gnu: r-trimcluster: Update license. 
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus 8c72b83096
gnu: Add r-bbmle. 
* gnu/packages/cran.scm (r-bbmle): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus d6b156dc04
gnu: Add r-inline. 
* gnu/packages/cran.scm (r-inline): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus 062b6dbd25
gnu: Add r-lmtest. 
* gnu/packages/cran.scm (r-lmtest): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus 58db98c9f2
gnu: Add r-extremes. 
* gnu/packages/cran.scm (r-extremes): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus 28476b4bc0
gnu: Add r-distillery. 
* gnu/packages/cran.scm (r-distillery): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus 6427e62005
gnu: Add r-lmoments. 
* gnu/packages/cran.scm (r-lmoments): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus e389d10f55
gnu: Add r-rmtstat. 
* gnu/packages/cran.scm (r-rmtstat): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus b723dedf81
gnu: Add r-rook. 
* gnu/packages/web.scm (r-rook): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus bc0081e76f
gnu: Add r-sp. 
* gnu/packages/cran.scm (r-sp): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus 3349faecf5
gnu: Add r-proxy. 
* gnu/packages/cran.scm (r-proxy): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus ac8402072b
gnu: Add r-ggally. 
* gnu/packages/cran.scm (r-ggally): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus c9c6f4b543
gnu: Add r-progress. 
* gnu/packages/cran.scm (r-progress): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus 71be51d531
gnu: Add r-reshape. 
* gnu/packages/cran.scm (r-reshape): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus 18a16ceb7c
gnu: Add r-prettyunits. 
* gnu/packages/cran.scm (r-prettyunits): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus 49c9c29790
gnu: Add r-ffbase. 
* gnu/packages/cran.scm (r-ffbase): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus a7f0faa204
gnu: Add r-ff. 
* gnu/packages/cran.scm (r-ff): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus f2e974e1a2
gnu: Add r-fastmatch. 
* gnu/packages/cran.scm (r-fastmatch): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus e0268ff2e4
gnu: Add r-getoptlong. 
* gnu/packages/cran.scm (r-getoptlong): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus d3c67e1b45
gnu: Add r-dendextend. 
* gnu/packages/cran.scm (r-dendextend): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus 0548660420
gnu: Add r-compare. 
* gnu/packages/cran.scm (r-compare): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus eb60149eee
gnu: Add r-png. 
* gnu/packages/image.scm (r-png): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus 5cc79c9c50
gnu: Add r-powerlaw. 
* gnu/packages/cran.scm (r-powerlaw): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 2856369fad
gnu: Add r-circlize. 
* gnu/packages/cran.scm (r-circlize): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 4847a62ea9
gnu: Add r-globaloptions. 
* gnu/packages/cran.scm (r-globaloptions): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 2bdb5c3f78
gnu: Add r-shape. 
* gnu/packages/cran.scm (r-shape): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus c69d27db57
gnu: Add r-calibrate. 
* gnu/packages/cran.scm (r-calibrate): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 33ce12e293
gnu: Add r-auc. 
* gnu/packages/cran.scm (r-auc): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 4a007ffafe
gnu: Add r-annotationhub. 
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus 5f96f30f5d
gnu: Add r-interactivedisplaybase. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
 2017-08-17 17:25:46 +02:00
Efraim Flashner a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b. 
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
 2017-08-17 18:17:00 +03:00
Efraim Flashner aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures. 
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
 2017-08-17 18:16:57 +03:00
Nicolas Goaziou 721e1987d0
gnu: Add mgba. 
* gnu/packages/games.scm (mgba): New public variable.
 2017-08-17 10:56:04 +02:00
Ricardo Wurmus a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
 2017-08-17 09:12:46 +02:00
Efraim Flashner e3b861ce38
gnu: python-cython: Update to 0.26. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-17 06:46:06 +03:00
Danny Milosavljevic d6ef422fe7
gnu: Add fbreader. 
* gnu/packages/ebook.scm (fbreader): New variable.
 2017-08-17 02:00:51 +02:00
Danny Milosavljevic 84a52639c9
gnu: Add liblinebreak. 
* gnu/packages/ebook.scm (liblinebreak): New variable.
 2017-08-17 01:56:38 +02:00
Tobias Geerinckx-Rice f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3. 
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
 2017-08-16 22:35:11 +02:00
Tobias Geerinckx-Rice f37995fa20
gnu: python-cryptography: Update to 2.0.3. 
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
 2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice f886e7cab1
gnu: limnoria: Update to 2017.08.03. 
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
 2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice e2a4c13023
gnu: cbatticon: Update to 1.6.6. 
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
 2017-08-16 22:35:10 +02:00