Commit Graph

29152 Commits

Author SHA1 Message Date
Vagrant Cascadian b4c698c8c9
gnu: python-trezor: Update to 0.10.2.
* gnu/packages/finance.scm (python-trezor): Update to 0.10.2.
[arguments]: Replace check with tests that do not require hardware device.
[propagated-inputs]: Add python-click, python-libusb1, python-pyblake2 and
python-typing.
[native-inputs]: Add python-mock and python-pytest.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-29 14:52:56 -04:00
pimi 4f9355c360
gnu: Add gffcompare.
gnu/packages/bioinformatics.scm (gffcompare): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-29 14:13:49 -04:00
pimi 9e21f2170e
gnu: Add r-abcoptim.
gnu/packages/cran.scm (r-abcoptim): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-29 14:13:46 -04:00
Danny Milosavljevic 15c56e8273
gnu: Add solaar.
* gnu/packages/admin.scm (solaar): New variable.
2018-08-29 17:18:30 +02:00
Danny Milosavljevic ac94ccb9b4
gnu: Add python-pyudev.
* gnu/packages/admin.scm (python-pyudev): New variable.
2018-08-29 17:18:28 +02:00
Ricardo Wurmus c7fe888b42
gnu: Add python-scanpy.
* gnu/packages/bioinformatics.scm (python-scanpy): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus 22b770ce00
gnu: Add python-anndata.
* gnu/packages/python.scm (python-anndata): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus d8b8eb3ff5
gnu: Add python-numba.
* gnu/packages/python.scm (python-numba): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus 8892cac329
gnu: Add python-llvmlite.
* gnu/packages/llvm.scm (python-llvmlite): New variable.
2018-08-29 17:06:13 +02:00
Marius Bakke 9e17757ff5
Revert "gnu: snappy: Optimise."
This causes too many rebuilds for the master branch.

This reverts commit f96ed06805.
2018-08-29 16:58:54 +02:00
Ricardo Wurmus 9587544b44
gnu: Add ghc 8.4.3.
* gnu/packages/haskell.scm (ghc-8): Rename this...
(ghc-8.0): ...to this.
(ghc): Point at ghc-8.0.
(ghc-8): New variable for GHC 8.4.3.

Co-authored-by: Timothy Samplet <samplet@ngyro.com>
2018-08-29 16:56:35 +02:00
Ricardo Wurmus 59b55def00
gnu: Add r-infotheo.
* gnu/packages/cran.scm (r-infotheo): New variable.
2018-08-29 13:11:17 +02:00
Tobias Geerinckx-Rice acf18cb190
gnu: capstone: Use HTTPS home page.
* gnu/packages/engineering.scm (capstone)[home-page]: Use HTTPS.
2018-08-28 22:46:38 +02:00
Tobias Geerinckx-Rice 2c3d30ef51
gnu: r-plotrix: Update to 3.7-3.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-3.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice f882d7c7c5
gnu: python-apipkg: Update home page.
* gnu/packages/python.scm (python-apipkg)[home-page]: Update.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice e29bb27d88
gnu: r-pracma: Update to 2.1.5.
* gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice 7bbdd943e7
gnu: claws-mail: Update to 3.17.1.
* gnu/packages/mail.scm (claws-mail): Update to 3.17.1.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice 4fca5a44f6
gnu: libntlm: Update to 1.5.
* gnu/packages/gsasl.scm (libntlm): Update to 1.5.
[source]: Use HTTPS.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice f96ed06805
gnu: snappy: Optimise.
* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’.
* gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-08-28 22:30:59 +02:00
Efraim Flashner dc8675afa7
gnu: Add urlscan.
* gnu/packages/mail.scm (urlscan): New variable.
2018-08-28 22:48:32 +03:00
Efraim Flashner 967de7c5b0
gnu: Add ephoto.
* gnu/packages/enlightenment.scm (ephoto): New variable.
2018-08-28 22:45:55 +03:00
Vagrant Cascadian 84fbb4b223
gnu: electron-cash: Update to 3.3.1.
* gnu/packages/finance.scm (electron-cash): Update to 3.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-28 15:30:13 -04:00
Leo Famulari 8a5a1eff42
gnu: dropbear: Fix CVE-2018-15599.
* gnu/packages/patches/dropbear-CVE-2018-15599.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (dropbear)[source]: Use it.
2018-08-28 14:44:11 -04:00
Ludovic Courtès 6772ed1e07
services: openssh: Add 'log-level' field.
* gnu/services/ssh.scm (<openssh-configuration>)[log-level]: New field.
(openssh-config-file): Honor it.
* doc/guix.texi (Networking Services): Document it.
2018-08-28 12:35:02 +02:00
Ludovic Courtès 1ae29e3f5a
gnu: dico: Update to 2.6.
* gnu/packages/dico.scm (dico): Update to 2.6.
[inputs]: Switch to GUILE-2.2.
2018-08-28 12:35:02 +02:00
Ison111 d2434b6966
gnu: Add SpaceFM.
* gnu/packages/lxde.scm (spacefm): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-08-28 12:35:02 +02:00
Alex Kost 40f7ebac66
gnu: Add emacs-build-farm.
* gnu/packages/emacs.scm (emacs-build-farm): New variable.
2018-08-28 12:23:52 +03:00
Alex Kost 8b1f8f64c8
gnu: openmw: Update to 0.44.0.
* gnu/packages/game-development.scm (openmw): Update to 0.44.0.
2018-08-28 12:23:52 +03:00
Chris Marusich 3bcb305b98
services: tor: Make it easier to use UNIX sockets.
* doc/guix.texi (Networking Services): Document it, and mention that
tor-service is deprecated.
* gnu/services/networking.scm (<tor-configuration>) <socks-socket-type>:
New field.
(tor-configuration->torrc): When socks-socket-type is 'unix, set
SocksPort to UNIX domain socket /var/run/tor/socks-sock and set
UnixSocksGroupWritable to 1.
* gnu/tests/networking.scm (%tor-os/unix-socks-socket): Instead of using
a custom config file, just set socks-socket-type to 'unix.
2018-08-28 00:25:05 -07:00
Chris Marusich b0f951e4f0
tests: tor: Add more test cases.
* gnu/tests/networking.scm (%tor-os/unix-socks-socket): New variable.
(run-tor-test) <os/unix-socks-socket, marionette/unix-socks-socket>
<socket-directory>: New variables.
<"tor is alive">: Move common code from this test case...
<tor-is-alive?>: ...into this new procedure.
<"tor is listening", "tor is alive, even when using a SOCKS socket">
<"tor is listening, even when using a SOCKS socket">: New test cases.
2018-08-28 00:19:58 -07:00
Chris Marusich cb29343940
marionette: Add wait-for-unix-socket.
* gnu/build/marionette.scm (wait-for-unix-socket): New variable.
2018-08-28 00:19:58 -07:00
Chris Marusich 4dd53a83b5
marionette: Add support for QEMU's "quit" command.
* gnu/build/marionette.scm (marionette-control): Don't wait for the
monitor prompt when the command was "quit".
2018-08-28 00:14:25 -07:00
Chris Marusich d973915e48
services: tor: Rename activation procedure.
* gnu/services/networking.scm: Rename the procedure
tor-hidden-service-activation to tor-activation.
2018-08-28 00:14:24 -07:00
Chris Marusich 5dfd80e1c5
services: tor: Add a system test.
* gnu/services/networking.scm (tor-configuration->torrc): Set PidFile to
/var/run/tor/tor.pid in the base torrc configuration.
(tor-shepherd-service) <start>: Call make-forkexec-constructor/container with
a new #:pid-file argument to tell Shepherd where to find the PID file.  Add a
a new <file-system-mapping> to its existing #:mappings argument to share
/var/run/tor with the the container.
(tor-hidden-services-activation): Update docstring.  Create /var/run/tor and
set its permissions so only the tor user can access it.
* gnu/tests/networking.scm (%test-tor, %tor-os): New variables.
(run-tor-test): New procedure.
2018-08-28 00:14:24 -07:00
Marius Bakke 526ce41930
gnu: GRUB: Check for errors from efibootmgr.
* gnu/packages/patches/grub-check-error-efibootmgr.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bootloaders.scm (grub)[source](patches): New field.
2018-08-28 01:19:28 +02:00
Marius Bakke 2987b2e0d2
gnu: seabios: Update source URI.
* gnu/packages/firmware.scm (seabios)[source](uri): Download from seabios.org.
2018-08-28 01:19:28 +02:00
Marius Bakke eb87b634a7
gnu: slang: Update to 2.3.2.
* gnu/packages/slang.scm (slang): Update to 2.3.2.
2018-08-28 01:19:28 +02:00
Marius Bakke 3c3c3d1d92
gnu: emacs-async: Download using git.
The MELPA tarball hash changed.  Prevent this problem in the future
by downloading a git checkout.

* gnu/packages/emacs.scm (emacs-async)[home-page]: Update to actual.
[source]: Use GIT-FETCH.
2018-08-28 01:19:28 +02:00
Leo Famulari 0de33cb364
gnu: feh: Enable EXIF support.
* gnu/packages/image-viewers.scm (feh)[arguments]: Enable EXIF support.
(inputs): Add libexif.
2018-08-27 17:04:57 -04:00
Leo Famulari f2d2dc70fc
gnu: libexif: Update home-page URL.
* gnu/packages/photo.scm (libexif)[home-page]: Update URL.
2018-08-27 17:04:57 -04:00
Leo Famulari 6635a3cc7f
gnu: python-pygit2: Update to 0.26.4.
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4.
[source]: Remove 'python-pygit2-disable-network-tests.patch'.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-27 15:13:46 -04:00
Clément Lassieur a30cbd5dfb
gnu: cuirass: Update to 8d40c49.
* gnu/packages/ci.scm (cuirass): Update to 8d40c49.
2018-08-27 16:12:56 +02:00
Pierre Neidhardt 4715f92ef0
Update email for Pierre Neidhardt.
* .mailmap: Add name and email for Pierre Neidhardt.
* gnu/packages/c.scm, gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/disk.scm, gnu/packages/emacs.scm, gnu/packages/freedesktop.scm,
gnu/packages/golang.scm, gnu/packages/image.scm, gnu/packages/music.scm,
gnu/packages/networking.scm, gnu/packages/password-utils.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/textutils.scm, gnu/packages/video.scm, gnu/packages/xdisorg.scm:
Update email for Pierre Neidhardt.
2018-08-27 14:46:26 +02:00
Rutger Helling 2aeee872a6
gnu: weston: Update to 5.0.0.
* gnu/packages/freedesktop.scm (weston): Update to 5.0.0.
2018-08-27 10:11:30 +02:00
Ludovic Courtès 1ca54999db
gnu: Add Lepton-EDA.
* gnu/packages/engineering.scm (lepton-eda): New variable.
2018-08-27 01:13:23 +02:00
Ludovic Courtès 69502b5eb4
gnu: Add guile-aa-tree.
* gnu/packages/guile.scm (guile-aa-tree): New variable.
2018-08-27 01:13:23 +02:00
Christopher Lemmer Webber 6948fa0875
gnu: emacs-racket-mode: Update to commit add0190.
* gnu/packages/emacs.scm (emacs-racket-mode): Update to commit add0190.
2018-08-26 07:02:04 -04:00
Arun Isaac 2cad58ca6f
gnu: ghc-scientific: Update to 0.3.6.2.
* gnu/packages/haskell.scm (ghc-scientific): Update to 0.3.6.2.
[inputs]: Move ghc-tasty ...
[native-inputs]: ... to here.
2018-08-26 11:48:22 +05:30
Arun Isaac 7550f4b0ef
gnu: ghc-integer-logarithms: Update to 1.0.2.1.
* gnu/packages/haskell.scm (ghc-integer-logarithms): Update to 1.0.2.1.
[inputs]: Move ghc-quickcheck, ghc-smallcheck, ghc-tasty, ghc-tasty-hunit,
ghc-tasty-quickcheck, ghc-tasty-smallcheck ...
[native-inputs]: ... to here.
[home-page]: Update URI.
2018-08-26 11:37:25 +05:30
Arun Isaac b625f3a5fb
gnu: ghc-smallcheck: Update to 1.1.5.
* gnu/packages/haskell.scm (ghc-smallcheck): Update to 1.1.5.
2018-08-26 11:33:48 +05:30
Arun Isaac 3c30054290
gnu: ghc-optparse-applicative: Update to 0.14.2.0.
* gnu/packages/haskell.scm (ghc-optparse-applicative): Update to 0.14.2.0.
[arguments]: Enable tests.
2018-08-26 11:27:00 +05:30
Mark H Weaver cfb15a5163
gnu: linux-libre: Update to 4.18.5.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.5.
(%linux-libre-hash): Update hash.
2018-08-26 00:38:41 -04:00
Mark H Weaver fabe2c7354
gnu: linux-libre@4.14: Update to 4.14.67.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.67.
(%linux-libre-4.14-hash): Update hash.
2018-08-26 00:36:42 -04:00
Mark H Weaver 8d55adfa67
gnu: linux-libre@4.9: Update to 4.9.124.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.124.
2018-08-26 00:36:11 -04:00
Mark H Weaver 032712f621
gnu: linux-libre@4.4: Update to 4.4.152.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.152.
2018-08-26 00:35:30 -04:00
Ludovic Courtès 64daf2177f
gnu: emacs-recent-addresses: Switch to a branch that works with Helm.
* gnu/packages/emacs.scm (emacs-recent-addresses)[source]: Change URL
and update to afbbfdc.
2018-08-26 01:47:41 +02:00
Kyle Meyer bff861ece5
gnu: Add emacs-git-annex.
* gnu/packages/emacs.scm (emacs-git-annex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-26 01:47:40 +02:00
Kyle Meyer 8a9e0b6ebf
gnu: emacs-recent-addresses: Add missing words to description.
* gnu/packages/emacs.scm (emacs-recent-addresses)[description]: Add missing
words.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-26 01:47:40 +02:00
Kei Kebreau 7d01ee66d4
gnu: Add avogadro.
* gnu/packages/chemistry.scm (avogadro): New variable.
* gnu/packages/patches/avogadro-boost148.patch,
gnu/packages/patches/avogadro-eigen3-update.patch,
gnu/packages/patches/avogadro-python-eigen-lib.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2018-08-25 17:05:30 -04:00
Marius Bakke 94e9d750a2
gnu: libx11: Replace with 1.6.6 [security fixes].
This fixes CVE-2018-14599, CVE-2018-14600, and CVE-2018-14598.

* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11-1.6.6): New public variable.
2018-08-25 16:32:06 +02:00
宋文武 7789bf9531
gnu: dante: Disable preloading to make 'sockd' work.
* gnu/packages/networking.scm (dante)[arguments]: Pass '--disable-preload'
to #:configure-flags.
2018-08-25 16:40:21 +08:00
Leo Famulari 36a8d5cdf4
gnu: OpenSSH: Update to 7.8p1.
* gnu/packages/ssh.scm (openssh): Update to 7.8p1.
[source]: Remove 'openssh-CVE-2018-15473.patch'.
* gnu/packages/patches/openssh-CVE-2018-15473.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-24 17:04:58 -04:00
Ludovic Courtès c1352b4bad
gnu: font-gnu-unifont: Update to 11.0.02.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.02.
[arguments]: Adjust code to install 'unifont.info.gz' in 'install'
phase.
2018-08-24 17:54:10 +02:00
Ludovic Courtès bf0bb925ea
gnu: gdb: Update to 8.1.1.
* gnu/packages/gdb.scm (gdb): Update to 8.1.1.
2018-08-24 17:50:52 +02:00
Ricardo Wurmus 079cdd9c15
gnu: Add find-circ.
* gnu/packages/bioinformatics.scm (find-circ): New variable.
2018-08-24 11:20:19 +02:00
Tobias Geerinckx-Rice 4a3cf8929f
gnu: r-catools: Update to 1.17.1.1.
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.1.
2018-08-24 04:25:50 +02:00
Tobias Geerinckx-Rice 0e5d66abf6
gnu: keepassxc: Update to 2.3.4.
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.4.
[arguments]: Remove obsolete ‘patch-sources’ phase.
2018-08-24 04:25:50 +02:00
Tobias Geerinckx-Rice a7b14a1b39
gnu: capstone: Update to 3.0.5.
* gnu/packages/engineering.scm (capstone): Update to 3.0.5.
[arguments]: Set cstool's LDFLAGS in the environment instead of
SUBSTITUTE*ing the Makefile.
2018-08-24 03:04:56 +02:00
Tobias Geerinckx-Rice 77c027b98b
gnu: r-trimcluster: Update to 0.1-2.1.
* gnu/packages/statistics.scm (r-trimcluster): Update to 0.1-2.1.
2018-08-24 02:30:43 +02:00
Tobias Geerinckx-Rice 6d83cd1f9a
gnu: r-synchronicity: Update to 1.3.5.
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.5.
2018-08-24 02:30:42 +02:00
Tobias Geerinckx-Rice 6a9a50fd2f
gnu: guile-lib: Update to 0.2.6.1.
* gnu/packages/guile.scm (guile-lib): Update to 0.2.6.1.
[source]: Remove obsolete snippet.
2018-08-24 02:30:42 +02:00
Tobias Geerinckx-Rice a0a7e42500
gnu: tuxguitar: Update to 1.5.2.
* gnu/packages/music.scm (tuxguitar): Update to 1.5.2.
[source]: Remove obsolete snippet.
2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice 38146797e6
gnu: libgig: Update to 4.1.0.
* gnu/packages/music.scm (libgig): Update to 4.1.0.
2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice f6181921e5
gnu: denemo: Use INVOKE.
* gnu/packages/music.scm (denemo)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice fbde7b08e5
gnu: ncmpc: Update to 0.29.
* gnu/packages/mpd.scm (ncmpc): Update to 0.29.
[build-system]: Switch to Meson.
[arguments]: Find ncurses.h.
[native-inputs]: Add gettext.
2018-08-24 02:30:41 +02:00
Ludovic Courtès 0b4e5f7e5b
gnu: parallel: Update to 20180822.
* gnu/packages/parallel.scm (parallel): Update to 20180822.
2018-08-24 00:40:09 +02:00
Ludovic Courtès 444488fc1b
gnu: boost: Move 1.59.0 definition to boost.scm.
Fixes a regression introduced in commit
7cbf06d8c2 where the top-level code of
these two modules would depend on each other, leading to "boost: unbound
variable" kind of errors in some circumstances.

* gnu/packages/databases.scm (boost-for-mysql): Move to...
* gnu/packages/boost.scm (boost-for-mysql): ... here.  Make public and
add 'properties' field.
2018-08-24 00:36:04 +02:00
Tobias Geerinckx-Rice d32da49c76
gnu: r-devtools: Update to 1.13.6.
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.6.
2018-08-23 23:11:52 +02:00
Tobias Geerinckx-Rice c95f9f09a7
gnu: drumkv1: Update to 0.9.2.
* gnu/packages/music.scm (drumkv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice 69b4d24871
gnu: synthv1: Update to 0.9.2.
* gnu/packages/music.scm (synthv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice 29618d6722
gnu: samplv1: Update to 0.9.2.
* gnu/packages/music.scm (samplv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice 2c59066f6a
gnu: padthv1: Update to 0.9.2.
* gnu/packages/music.scm (padthv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice 9459216aa1
gnu: Update home pages for the V1 synth family.
* gnu/packages/music.scm (synthv1, drumkv1, samplv1, padthv1)
[home-page]: Update & use HTTPS.
2018-08-23 23:01:55 +02:00
pimi 16b0e8da48
gnu: Add r-a3.
gnu/packages/cran.scm (r-a3): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
pimi 881cc61c1b
gnu: Add r-manipulatewidget.
gnu/packages/cran.scm (r-manipulatewidget): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
pimi 87b576aa8b
gnu: Add r-slam.
gnu/packages/cran.scm (r-slam): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
pimi c994418b8c
gnu: Add r-abcanalysis.
gnu/packages/cran.scm (r-abcanalysis): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
pimi 67cf070239
gnu: Add r-miniui.
gnu/packages/web.scm (r-miniui): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
Tobias Geerinckx-Rice 694765e1d6
gnu: qjackctl: Update to 0.5.3.
* gnu/packages/audio.scm (qjackctl): Update to 0.5.3.
2018-08-23 17:16:42 +02:00
Tobias Geerinckx-Rice 97353dfb69
gnu: byobu: Update home page.
* gnu/packages/screen.scm (byobu)[home-page]: Update & use HTTPS.
2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice 9e29921162
gnu: byobu: Update to 5.127.
* gnu/packages/screen.scm (byobu): Update to 5.127.
* gnu/packages/patches/byobu-writable-status.patch: Adjust context
accordingly.
2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice f868276b8a
gnu: wine-staging-patchset-data: Don't use unstable archive.
* gnu/packages/wine.scm (wine-staging-patchset-data)[source]:
Use GIT-FETCH and GIT-FILE-NAME.
[native-inputs]: Remove unzip.
[arguments]: Adjust and refactor accordingly.
2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice 574e2ee8ea
gnu: yubico-piv-tool: Update to 1.6.1.
* gnu/packages/security-token.scm (yubico-piv-tool): Update to 1.6.1.
2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice fa5511b6e9
gnu: r-car: Update to 3.0-1.
* gnu/packages/statistics.scm (r-car): Update to 3.0-1.
2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 39bb1cc77a
gnu: r-digest: Update to 0.6.16.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.16.
2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice ed61c44895
gnu: r-dplyr: Update to 0.7.6.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.6.
2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 51dbad04c5
gnu: r-rcpp: Update to 0.12.18.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.18.
2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 02489a6646
gnu: duplicity: Update to 0.7.18.
* gnu/packages/backup.scm (duplicity): Update to 0.7.18.
2018-08-23 17:16:39 +02:00
Arun Isaac 72816ebed2
gnu: darcs: Update to 2.14.1.
* gnu/packages/version-control.scm (darcs): Update to 2.14.1.
[arguments]: Add patch-sh phase. Enable tests.
2018-08-23 15:51:43 +05:30
Arun Isaac d3c7e70858
gnu: ghc-zlib: Update to 0.6.2.
* gnu/packages/haskell.scm (ghc-zlib): Update to 0.6.2.
2018-08-23 14:43:48 +05:30
Arun Isaac cdccdec1f2
gnu: ghc-quickcheck-instances: Update to 0.3.18.
* gnu/packages/haskell-check.scm (ghc-quickcheck-instances): Update to 0.3.18.
[arguments]: Allow building with newer base-compat.
2018-08-23 14:37:57 +05:30
Arun Isaac f797a0e987
gnu: ghc-graphviz: Update to 2999.20.0.2.
* gnu/packages/haskell.scm (ghc-graphviz): Update to 2999.20.0.2.
[native-inputs]: Add ghc-hspec, graphviz and hspec-discover.
2018-08-23 13:21:23 +05:30
Arun Isaac e173a95ffa
gnu: ghc-wl-pprint-text: Update to 1.2.0.0.
* gnu/packages/haskell.scm (ghc-wl-pprint-text): Update to 1.2.0.0.
[inputs]: Add ghc-base-compat.
2018-08-23 13:21:23 +05:30
Arun Isaac 0fa2c552fc
gnu: ghc-base-compat: Update to 0.10.4.
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.10.4.
2018-08-23 13:21:23 +05:30
Arun Isaac a3ab433a14
gnu: ghc-fgl-arbitrary: Allow building with newer hspec.
* gnu/packages/haskell.scm (ghc-fgl-arbitrary)[arguments]: Allow building with
newer hspec.
2018-08-23 13:00:53 +05:30
Arun Isaac c4348ca72c
gnu: ghc-shelly: Update to 1.8.1.
* gnu/packages/haskell.scm (ghc-shelly): Update to 1.8.1.
[inputs]: Add ghc-hspec-contrib.
2018-08-23 12:53:47 +05:30
Arun Isaac 66dbe158cf
gnu: ghc-sandi: Update to 0.4.2.
* gnu/packages/haskell.scm (ghc-sandi): Update to 0.4.2.
2018-08-23 12:44:00 +05:30
Arun Isaac b1a1600030
gnu: ghc-fgl: Update to 5.6.0.0.
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.6.0.0.
[arguments]: Allow building with newer hspec.
2018-08-23 12:32:46 +05:30
Mark H Weaver 4e51d3e9ae
gnu: guile-redis: Remove duplicate 'home-page' field.
* gnu/packages/guile.scm (guile-redis): Remove duplicate 'home-page' field.
2018-08-23 02:30:30 -04:00
Mark H Weaver efe2e7506e
gnu: guile-gcrypt: Remove duplicate 'home-page' field.
This is a followup to commit b0cb92b2d4.

* gnu/packages/gnupg.scm (guile-gcrypt): Remove duplicate 'home-page' field.
2018-08-23 02:29:31 -04:00
Mark H Weaver 12dc04d0b4
gnu: linux-libre: Update to 4.18.4.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.4.
(%linux-libre-hash): Update hash.
2018-08-23 02:22:57 -04:00
Mark H Weaver 98dfe06e3e
gnu: linux-libre@4.14: Update to 4.14.66.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.66.
(%linux-libre-4.14-hash): Update hash.
2018-08-23 02:21:28 -04:00
Mark H Weaver bb2efc0384
gnu: linux-libre@4.9: Update to 4.9.123.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.123.
2018-08-23 02:20:44 -04:00
Mark H Weaver 435722f72c
gnu: linux-libre@4.4: Update to 4.4.151.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.151.
2018-08-23 02:20:00 -04:00
Ludovic Courtès b0cb92b2d4
gnu: Add guile-gcrypt.
* gnu/packages/gnupg.scm (guile-gcrypt): New variable.
2018-08-23 00:44:55 +02:00
Leo Famulari 58927996d9
gnu: perl-dbd-mysql: Update to 4.046.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22 15:40:08 -04:00
Paul Garlick 414f620fbb
gnu: python-pkgconfig: Enable tests.
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22 15:13:52 -04:00
Paul Garlick 5fab62527c
gnu: python-pkgconfig: Update to 1.3.1.
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22 15:13:49 -04:00
Leo Famulari 373a9fd4db
gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}.
* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch,
gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (soundtouch)[source]: Use them.
2018-08-22 13:38:39 -04:00
Leo Famulari eb88ccf711
gnu: soundtouch: Update to 2.0.0.
* gnu/packages/audio.scm (soundtouch): Update to 2.0.0.
2018-08-22 13:38:39 -04:00
Leo Famulari 180a8986e5
gnu: ImageMagick: Update to 6.9.10-10.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-10.
2018-08-22 03:25:47 -04:00
Leo Famulari 09efe9af2d
gnu: GraphicsMagick: Update to 1.3.30.
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.30.
2018-08-22 03:25:46 -04:00
Tobias Geerinckx-Rice dc695341f7
gnu: r-fpc: Update to 2.1-11.1.
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.1.
2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice 7138c48e6e
gnu: r-survival: Update to 2.42-6.
* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice 311f06c94a
gnu: Add sqlcrush.
* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22 00:03:43 +02:00
Tobias Geerinckx-Rice 9763102bd7
gnu: Add python-pymysql.
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
2018-08-22 00:03:43 +02:00
Raphaël Mélotte f998453559
gnu: luakit: Fix crash on startup.
* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the
  wrapping phase.

This fixes a crash when no configuration file is present in the user's home
directory. It allows luakit to use it's own default configuration files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-21 23:27:09 +02:00
Ludovic Courtès c305ac30c3
gnu: guile-ssh: Don't build libguile-ssh.a.
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
2018-08-21 23:27:08 +02:00
Ludovic Courtès f43d2dcd80
linux-modules: Adjust 'section-contents' procedure.
* gnu/build/linux-modules.scm (section-contents): Honor SECTION as was
intended.
(modinfo-section-contents): Pass 'section-contents' a section, not a
section name.
2018-08-21 23:27:08 +02:00
Leo Famulari 6cd2c4a83c
gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473].
* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2018-08-21 11:16:30 -04:00
Leo Famulari 2fbc38e33b
gnu: python-paramiko: Add some missing dependencies.
* gnu/packages/python-crypto.scm (python-paramiko,
python2-paramiko)[propagated-inputs]: Add python-bcrypt and python-pynacl.
2018-08-21 11:04:47 -04:00
Pierre Neidhardt 15e57838c6
gnu: asymptote: Use minimal texlive-union.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Replace texlive with texlive-union.
2018-08-21 16:32:22 +02:00
Pierre Neidhardt 756fc3e1ef
gnu: texlive-latex-base: Include support files.
* gnu/packages/tex.scm (texlive-latex-base)[native-inputs]: Include support files.
2018-08-21 16:32:22 +02:00
Pierre Neidhardt 9b02a79bb0
gnu: mit-scheme: Use minimal texlive-union.
* gnu/packages/scheme.scm (mit-scheme)[native-inputs]: Replace texlive with texlive-union.
2018-08-21 16:30:22 +02:00
Tobias Geerinckx-Rice 49dcfb5045
gnu: sl: Don't use unstable tarball.
* gnu/packages/toys.scm (sl)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice 20b5b97381
gnu: python-rpy2: Update to 2.9.4.
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice db09a450d2
gnu: python-rpy2: Update home page.
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice 93f9e0d9e9
gnu: r-iterators: Update to 1.0.10.
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice 4370881631
gnu: r-foreign: Update to 0.8-71.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
2018-08-21 07:17:05 +02:00
Chris Marusich 6fb6ac6857
gnu: services: Fix pcscd activation bug.
Fixes: <https://bugs.gnu.org/32478>.

* gnu/services/security-token.scm (pcscd-activation): Idempotently create the
/var/lib/pcsc symlink so that it does not fail when it already exists.
2018-08-20 21:43:56 -07:00
Tobias Geerinckx-Rice 6d863cdedd
gnu: r-openssl: Update to 1.0.2.
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
2018-08-21 03:25:42 +02:00
Tobias Geerinckx-Rice 4481004fa4
gnu: r-modeltools: Update to 0.2-22.
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
2018-08-21 03:25:41 +02:00
Tobias Geerinckx-Rice 8ecf3f7ea5
gnu: mysql: Update to 5.7.23.
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 7cbf06d8c2
gnu: mysql: Fix build.
MySQL demands boost@1.59.0, and lying about it no longer works:

sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
   catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
                                                                                 ^
[...]

* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 725449bd7a
gnu: python-pyodbc: Update to 4.0.24.
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 28635e5266
gnu: python-mysqlclient: Update to 1.3.13.
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice db4e76416c
gnu: perl-dbd-sqlite: Update to 1.58.
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 9c112bee91
gnu: r-energy: Update to 1.7-5.
* gnu/packages/cran.scm (r-energy): Update to 1.7-5.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 8b0701d97a
gnu: r-tinytex: Update to 0.6.
* gnu/packages/cran.scm (r-tinytex): Update to 0.6.
[propagated-inputs]: Add r-xfun.
2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice 2045af8035
gnu: r-xfun: Update to 0.3.
* gnu/packages/cran.scm (r-xfun): Update to 0.3.
2018-08-20 20:17:18 +02:00