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Author SHA1 Message Date
Ricardo Wurmus 6df215f8c8
gnu: star: Update to 2.7.0b. 
* gnu/packages/bioinformatics.scm (star): Update to 2.7.0b.
[arguments]: Add "add-missing-header" build phase.
 2019-02-06 21:32:16 +01:00
Kei Kebreau d11840b43e
gnu: wxmaxima: Update to 19.01.3. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
 2019-02-06 12:52:27 -05:00
Kei Kebreau a4362fba0e
gnu: maxima: Update to 5.42.2. 
* gnu/packages/maths.scm (maxima): Update to 5.42.2.
 2019-02-06 12:52:27 -05:00
Pierre Neidhardt 808136bdb6
gnu: emacs-lispyville: Update to 20181217. 
* gnu/packages/emacs-xyz.scm (emacs-lispyville): Update to 20181217.
 2019-02-06 16:21:49 +01:00
Pierre Neidhardt caf810d355
gnu: emacs-lispy: Update to 20190205. 
* gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 20190205.
 2019-02-06 16:20:32 +01:00
Pierre Neidhardt de87d70e54
gnu: emacs-evil-collection: Update to 20190206. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190206.
 2019-02-06 16:20:23 +01:00
Pierre Neidhardt b6a7697914
gnu: emacs-evil: Update to 1.2.14. 
* gnu/packages/emacs-xyz.scm (emacs-evil): Update to 1.2.14.
 2019-02-06 16:18:28 +01:00
Christopher Baines 61dafdc0fe
gnu: Add guile-squee. 
* gnu/packages/guile-xyz.scm (guile-squee): New variable.
 2019-02-06 13:11:35 +00:00
Rutger Helling 9b43a73600
gnu: vulkan-headers: Update to 1.1.99. 
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.99.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update to 1.1.97.0.
 2019-02-06 12:10:52 +01:00
Christopher Baines e88fd8beb1
gnu: ocaml-splittable-random: Change @defn to @acronym. 
I see an error when running guix package -s relating to this:

  Throw to key `parser-error' with args `(#f "Unknown command" defn)'.

* gnu/packages/ocaml.scm (ocaml-splittable-random)[description]: Change @defn
to @acronym.
 2019-02-06 09:18:08 +00:00
Christopher Baines 1d5d0447d3
gnu: ocaml-spawn: Add missing @end itemize to description. 
As otherwise this error appears when running things like guix package -s:

  texinfo.scm:745:27: Throw to key `parser-error' with args `(#<input: string
  35ad0e0> "EOF while reading a token " "reading char data")'.

* gnu/packages/ocaml.scm (ocaml-spawn)[description]: Add @end itemize to the
end.
 2019-02-06 09:16:50 +00:00
Arun Isaac f4f8c23bae
gnu: mpop: Update to 1.4.2. 
* gnu/packages/mail.scm (mpop): Update to 1.4.2.
 2019-02-06 13:05:45 +05:30
Nicolas Goaziou 00e18f9fa9
gnu: musescore: Update to 3.0.2. 
* gnu/packages/music.scm (musescore): Update to 3.0.2.
[source]: Add patch.
* gnu/packages/patches/musescore-fix-use_webengine.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
 2019-02-05 23:11:43 +01:00
Julien Lepiller 8baa5c8b7c
gnu: Add ocaml-core-kernel. 
* gnu/packages/ocaml.scm (ocaml-core-kernel): New variable.
 2019-02-05 22:34:31 +01:00
Julien Lepiller 514b542018
gnu: Add ocaml-core. 
* gnu/packages/ocaml.scm (ocaml-core): New variable.
 2019-02-05 22:34:28 +01:00
Julien Lepiller 9e81db80eb
gnu: Add ocaml-spawn. 
* gnu/packages/ocaml.scm (ocaml-spawn): New variable.
 2019-02-05 22:34:26 +01:00
Julien Lepiller 3e3d5ffc34
gnu: Add ocaml-configurator. 
* gnu/packages/ocaml.scm (ocaml-configurator): New variable.
 2019-02-05 22:34:24 +01:00
Julien Lepiller dc361a2563
gnu: Add ocaml-jane-street-headers. 
* gnu/packages/ocaml.scm (ocaml-jane-street-headers): New variable.
 2019-02-05 22:34:22 +01:00
Julien Lepiller 5995e6d104
gnu: Add ocaml-splittable-random. 
* gnu/packages/ocaml.scm (ocaml-splittable-random): New variable.
 2019-02-05 22:34:20 +01:00
Julien Lepiller 255f1cae42
gnu: Add ocaml-ppx-jane. 
* gnu/packages/ocaml.scm (ocaml-ppx-jane): New variable.
 2019-02-05 22:34:17 +01:00
Julien Lepiller 7bd4b85e9b
gnu: Add ocaml-ppx-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-ppx-bin-prot): New variable.
 2019-02-05 22:34:15 +01:00
Julien Lepiller d13b9c5f67
gnu: Add ocaml-ppx-base. 
* gnu/packages/ocaml.scm (ocaml-ppx-base): New variable.
 2019-02-05 22:34:13 +01:00
Julien Lepiller 48ad1181d0
gnu: Add ocaml-ppx-typerep-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
 2019-02-05 22:34:11 +01:00
Julien Lepiller f4304c1d6c
gnu: Add ocaml-ppx-js-style. 
* gnu/packages/ocaml.scm (ocaml-ppx-js-style): New variable.
 2019-02-05 22:34:09 +01:00
Julien Lepiller 4e4e5fb1df
gnu: Add ocaml-ppx-expect. 
* gnu/packages/ocaml.scm (ocaml-ppx-expect): New variable.
 2019-02-05 22:34:07 +01:00
Julien Lepiller 7ec9a45db3
gnu: Add ocaml-ppx-assert. 
* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable.
 2019-02-05 22:34:04 +01:00
Julien Lepiller 6018802d9c
gnu: Add ocaml-ppx-fail. 
* gnu/packages/ocaml.scm (ocaml-ppx-fail): New variable.
 2019-02-05 22:34:02 +01:00
Julien Lepiller 1365ae47d1
gnu: Add ocaml-ppx-let. 
* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
 2019-02-05 22:34:00 +01:00
Julien Lepiller 79967eeafc
gnu: add ocaml-ppx-optcomp. 
* gnu/packages/ocaml.scm (ocaml-ppx-optcomp): New variable.
 2019-02-05 22:33:58 +01:00
Julien Lepiller 3f4ecf6649
gnu: Add ocaml-ppx-optional. 
* gnu/packages/ocaml.scm (ocaml-ppx-optional): New variable.
 2019-02-05 22:33:56 +01:00
Julien Lepiller 6a1140012c
gnu: Add ocaml-ppx-pipebang. 
* gnu/packages/ocaml.scm (ocaml-ppx-pipebang): New variable.
 2019-02-05 22:33:53 +01:00
Julien Lepiller 44a2ceca19
gnu: Add ocaml-ppx-sexp-message. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-message): New variable.
 2019-02-05 22:33:51 +01:00
Julien Lepiller e93281507d
gnu: Add ocaml-ppx-sexp-value. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-value): New variable.
 2019-02-05 22:33:49 +01:00
Julien Lepiller a58118ca6b
gnu: Add ocaml-typerep. 
* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
 2019-02-05 22:33:47 +01:00
Julien Lepiller 164b06daeb
gnu: Add ocaml-ppx-here. 
* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
 2019-02-05 22:33:42 +01:00
Julien Lepiller b42afab2e2
gnu: Add ocaml-ppx-bench. 
* gnu/packages/ocaml.scm (ocaml-ppx-bench): New variable.
 2019-02-05 22:33:40 +01:00
Julien Lepiller db67f56901
gnu: Add ocaml-ppx-enumerate. 
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
 2019-02-05 22:33:37 +01:00
Julien Lepiller 6692f65218
gnu: Add ocaml-ppx-hash. 
* gnu/packages/ocaml.scm (ocaml-ppx-hash): New variable.
 2019-02-05 22:33:35 +01:00
Julien Lepiller 49b01fa3e9
gnu: Add ocaml-octavius. 
* gnu/packages/ocaml.scm (ocaml-octavius): New variable.
 2019-02-05 22:33:33 +01:00
Julien Lepiller a0584d6c97
gnu: Add ocaml-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-bin-prot): New variable.
 2019-02-05 22:33:31 +01:00
Julien Lepiller e6f08ec93a
gnu: Add ocaml-ppx-custom-printf. 
* gnu/packages/ocaml.scm (ocaml-ppx-custom-printf): New variable.
 2019-02-05 22:33:29 +01:00
Julien Lepiller 7523674c2b
gnu: Add ocaml-ppx-variants-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable.
 2019-02-05 22:33:27 +01:00
Julien Lepiller c7cf165e38
gnu: Add ocaml-ppx-sexp-conv. 
* gnu/packaes/ocaml.scm (ocaml-ppx-sexp-conv): New variable.
 2019-02-05 22:33:25 +01:00
Julien Lepiller 7b685486ce
gnu: Add ocaml-ppx-fields-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-fields-conv): New variable.
 2019-02-05 22:33:23 +01:00
Julien Lepiller d9f8433e17
gnu: Add ocaml-variantslib. 
* gnu/packages/ocaml.scm (ocaml-variantslib): New variable.
 2019-02-05 22:33:21 +01:00
Julien Lepiller 143685fd1a
gnu: Add ocaml-fieldslib. 
* gnu/packages/ocaml.scm (ocaml-fieldslib): New variable.
 2019-02-05 22:33:19 +01:00
Julien Lepiller c16c8bb68d
gnu: Add ocaml-ppx-compare. 
* gnu/packages/ocaml.scm (ocaml-ppx-compare): New variable.
 2019-02-05 22:33:17 +01:00
Julien Lepiller 7e12b4c2bb
gnu: ocaml: Use propagated-inputs. 
* gnu/packages/ocaml.scm (ocaml-ppxlib, ocaml-ppx-derivers, ocaml-base)
(ocaml-sexplib): Use propagated-inputs.
 2019-02-05 22:33:15 +01:00
Julien Lepiller 51e52f47df
gnu: ocaml-ppx-derivers: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-ppx-derivers)[properties]: Add
upstream-name.
 2019-02-05 22:33:10 +01:00
Andreas Enge 6c8666b451
gnu: unison: Update to 2.51.1. 
* gnu/packages/ocaml.scm (unison): Update to 2.51.1, use source from git
instead of svn and remove a snippet, and compile with current OCaml.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-05 22:32:51 +01:00
Efraim Flashner 4aeb7f34c9
gnu: shflags: Don't use unstable tarball. 
* gnu/packages/version-control.scm (shflow)[source]: Use 'git-fetch'.
[native-inputs]: Remove gzip, tar.
 2019-02-05 22:17:14 +02:00
Tobias Geerinckx-Rice 66416c0c1c
gnu: cvs-fast-export: Update to 1.45. 
* gnu/packages/version-control.scm (cvs-fast-export): Update to 1.45.
[arguments]: Remove 'fix-setpython-PATH' phase.
 2019-02-05 19:48:23 +01:00
Tobias Geerinckx-Rice cfc92cd7bf
gnu: cvs-fast-export: Don't use NAME in source URI. 
* gnu/packages/version-control.scm (cvs-fast-export)[source]: Hard-code name.
 2019-02-05 19:48:22 +01:00
Efraim Flashner fd3638d89a
gnu: python-sh: Use custom 'check phase. 
* gnu/packages/python-xyz.scm (python-sh)[arguments]: Use custom 'check
phase as suggested by upstream documentation.
[native-inputs]: Add python-coverage.
 2019-02-05 19:54:10 +02:00
Tobias Geerinckx-Rice ea4b6ffd24
gnu: darcs: Update to 2.14.2. 
* gnu/packages/version-control.scm (darcs): Update to 2.14.2.
 2019-02-05 18:47:10 +01:00
Tobias Geerinckx-Rice ab1019f165
gnu: nyx: Update to 2.1.0. 
* gnu/packages/tor.scm (nyx): Update to 2.1.0.
[source]: Remove patch.
* gnu/packages/patches/nyx-show-header-stats-with-python3.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 18:47:09 +01:00
Tobias Geerinckx-Rice cc2c5c22b5
gnu: noice: Update to 0.7. 
* gnu/packages/suckless.scm (noice): Update to 0.7.
 2019-02-05 18:47:09 +01:00
Christopher Baines 406ef44258
gnu: Add guile-dbd-postgresql. 
Currently, there are packages for guile-dbi and guile-dbd-sqlite3, but the
PostgreSQL and MySQL parts are not packaged. As GNA which did host the release
archives for guile-dbi no longer exists, this package definition uses the
upstream Git repository.

* gnu/packages/guile-xyz.scm (guile-dbd-postgresql): New variable.
(guile-dbi)[arguments]: Add guile-dbd-postgresql to the rpath through the
[inputs]: Add guile-dbd-postgresql.
 2019-02-05 15:43:19 +00:00
Tobias Geerinckx-Rice 50f28ac4dc
gnu: pscircle: Update to 1.3.0. 
* gnu/packages/admin.scm (pscircle): Update to 1.3.0.
 2019-02-05 16:38:25 +01:00
Tobias Geerinckx-Rice 494b702a89
gnu: pscircle: Don't use unstable tarball. 
* gnu/packages/admin.scm (pscircle)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-05 16:38:25 +01:00
Maxim Cournoyer f9dff4f7fa
gnu: emacs-ert-runner: Fix lisp directory warning. 
This fixes the warning message such as: "Warning: Lisp directory
'/tmp/guix-build-emacs-ert-runner-0.7.0-1.90b8fdd.drv-0/source': No such file
or directory" that would be printed upon running ert-runner.

* gnu/packages/emacs-xyz.scm (emacs-ert-runner)[phases]{install-executable}:
Filter out the temporary source directory from the paths composing the
EMACSLOADPATH variable used in the wrapper.
 2019-02-05 10:09:11 -05:00
Andreas Enge 8cad7adb59
gnu: fdroidserver: Update to 1.1.1. 
* gnu/packages/android.scm (fdroidserver): Update to 1.1.1.
[propagated-inputs]: Add python-defusedxml.
 2019-02-05 15:55:58 +01:00
Maxim Cournoyer 975a953bfd
gnu: Add cqfd. 
* gnu/packages/docker.scm (cqfd): New variable.
 2019-02-05 09:33:39 -05:00
Tobias Geerinckx-Rice 5d941f4eda
gnu: thefuck: Update to 3.28. 
* gnu/packages/admin.scm (thefuck): Update to 3.28.
 2019-02-05 15:31:02 +01:00
Tobias Geerinckx-Rice 46f3e9358a
gnu: lynis: Update to 2.7.1. 
* gnu/packages/admin.scm (lynis): Update to 2.7.1.
 2019-02-05 15:31:01 +01:00
Rutger Helling a10050e2dd
gnu: wine-staging: Update to 4.1. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.1.
* gnu/packages/wine.scm (wine-staging): Update to 4.1.
 2019-02-05 12:01:13 +01:00
Rutger Helling 12a3abc6cc
gnu: retroarch: Fix wayland backend. 
* gnu/packages/emulators.scm (retroarch): Fix wayland backend.
[arguments]: Hard-code wayland-protocols.
[native-inputs]: Add wayland-protocols.
 2019-02-05 11:37:29 +01:00
Christopher Baines fd9a6d83c2
gnu: artanis: Make some improvements. 
* gnu/packages/guile-xyz.scm (artanis): Remove a tab character by the
revision.
[arguments]: Patch the site-dir for the help command, to make it work. Wrap
the art command such that it finds guile-json and guile-redis.
 2019-02-05 09:24:34 +00:00
Andrew Miloradovsky 16bb27f281
gnu: Add xmagnify. 
* gnu/packages/accessibility.scm (xmagnify): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-05 10:07:52 +01:00
Rutger Helling 45267af1a3
gnu: retroarch: Update to 1.7.6. 
* gnu/packages/emulators.scm (retroarch): Update to 1.7.6.
[inputs]: Add libxrandr.
 2019-02-05 08:24:20 +01:00
Nicolas Goaziou 2dd662f48e
gnu: emacs-org, emacs-org-contrib: Update to 9.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.2.1.
(emacs-org-contrib): Update to 20190203, i.e., 9.2.1.
 2019-02-05 07:42:30 +01:00
Leo Famulari e36d043882
gnu: Remove unused patch 'mcron-install.patch'. 
This is a followup to commit cfbf6de18c.

* gnu/packages/patches/mcron-install.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:50 +01:00
Leo Famulari 484f010dd7
gnu: Remove unused patch 'ocaml-graph-honor-source-date-epoch.patch'. 
This is a followup to commit 564cf93f2a.

* gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 5cc3dbbccd
gnu: Remove unused patch 'ocaml-findlib-make-install.patch'. 
This is a followup to commit bff6739d5e.

* gnu/packages/patches/ocaml-findlib-make-install.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 5baf78999c
gnu: Remove unused patch 'python2-rdflib-drop-sparqlwrapper.patch'. 
* gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 800d74dc9a
gnu: Remove unused patch 'openldap-CVE-2017-9287.patch'. 
This is a followup to commit 47415332d7.

* gnu/packages/patches/openldap-CVE-2017-9287.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 99ee274f0d
gnu: Remove unused patch 'glibc-memchr-overflow-i686.patch'. 
This is a followup to commit 67d527e35e.

* gnu/packages/patches/glibc-memchr-overflow-i686.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 1d1b0b1fb1
gnu: Remove unused patch 'net-tools-bitrot.patch'. 
This is a followup to commit b5f610620b.

* gnu/packages/patches/net-tools-bitrot.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 035542e93a
gnu: Remove unused patch 'xboing-CVE-2004-0149.patch'. 
This is a followup to commit 740a335558.

* gnu/packages/patches/xboing-CVE-2004-0149.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:56:39 +01:00
Leo Famulari 6bf2201350
gnu: Remove unused patch 'ao-cad-aarch64-support.patch'. 
This is a followup to commit 28f4d56dd3.

* gnu/packages/patches/ao-cad-aarch64-support.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:51:34 +01:00
Leo Famulari ee2875e57d
gnu: Remove unused patch 'blender-newer-ffmpeg.patch'. 
This is a followup to commit fc51c28ae8.

* gnu/packages/patches/blender-newer-ffmpeg.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:46:26 +01:00
Leo Famulari bfa3e64d7f
gnu: Removed unused patch 'readline-7.0-mingw.patch'. 
This patch was introduced in commit ae12d58627,
but it was never used.

See <https://bugs.gnu.org/26581> for more information.

* gnu/packages/patches/readline-7.0-mingw.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:45:25 +01:00
Gabriel Hondet 308d72bfe4
gnu: Add ocaml-ppx-inline-test. 
* gnu/packages/ocaml.scm (ocaml-ppx-inline-test): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-04 22:03:30 +01:00
Gabriel Hondet b2c2c415c5
gnu: ocaml-migrate-parsetree: Update to 1.2.0. 
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): Update to 1.2.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-04 22:03:27 +01:00
Gabriel Hondet 625a3daa12
gnu: dune: Update to 1.6.3. 
* gnu/packages/ocaml.scm (dune): Update to 1.6.3.
* guix/build/dune-build-system.scm (build): Use --libdir.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-04 22:03:22 +01:00
Tobias Geerinckx-Rice 8c35a6dd20
gnu: gx, go-github-com-whyrusleeping-gx-util: Update to 0.14.1. 
* gnu/packages/ipfs.scm (gx, go-github-com-whyrusleeping-gx-util): Update to 0.14.1.
 2019-02-04 21:46:56 +01:00
Tobias Geerinckx-Rice a702285275
gnu: gambit-c: Update to 4.9.2. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.9.2.
 2019-02-04 21:46:55 +01:00
Tobias Geerinckx-Rice d6bbb7e549
gnu: autossh: Update to 1.4g. 
* gnu/packages/ssh.scm (autossh): Update to 1.4g.
 2019-02-04 21:46:55 +01:00
Tobias Geerinckx-Rice 26045af93c
gnu: autossh: Use HTTPS home page. 
* gnu/packages/ssh.scm (autossh)[source, home-page]: Use HTTPS.
 2019-02-04 21:46:55 +01:00
Tobias Geerinckx-Rice 627c6531f0
gnu: sshuttle: Update to 0.78.5. 
* gnu/packages/vpn.scm (sshuttle): Update to 0.78.5.
[native-inputs]: Add python-flake8 and python-pytest-cov.
Remove implied python-pytest.
 2019-02-04 21:46:55 +01:00
Oleg Pykhalov 14a6699c17
gnu: php: Fix test failure. 
* gnu/packages/php.scm (php)[arguments]: Delete
'ext/curl/tests/curl_basic_009.phpt' file.
 2019-02-04 23:12:51 +03:00
Oleg Pykhalov 965ff0233e
gnu: gtk-vnc: Update to 0.9.0. 
* gnu/packages/gnome.scm (gtk-vnc): Update to 0.9.0.
 2019-02-04 22:44:53 +03:00
Ludovic Courtès 44cfbb6233
gnu: youtube-dl: Update to 2019.01.30.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.30.1.
 2019-02-04 16:20:01 +01:00
Ricardo Wurmus 3869effdd5
gnu: python-sh: Remove duplicate. 
* gnu/packages/python-xyz.scm (python-sh): Remove duplicate definition.
 2019-02-04 12:15:09 +01:00
Ricardo Wurmus c5b806a94a
gnu: go-github-com-minio-sha256-simd: Remove duplicate. 
* gnu/packages/syncthing.scm (go-github-com-minio-sha256-simd): Remove
duplicate.
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): Bump revision to
supersede the older duplicate.
 2019-02-04 12:13:07 +01:00
Ricardo Wurmus e24ef3698d
gnu: ecl-cl-markup: Remove duplicate. 
* gnu/packages/lisp.scm (ecl-cl-markup): Rename duplicate from this...
(ecl-cl-css): ...to this.
 2019-02-04 12:07:51 +01:00
Ricardo Wurmus 39ee82ffeb
gnu: python-astor: Remove duplicate. 
* gnu/packages/python-xyz.scm (python-astor): Remove duplicate.
 2019-02-04 12:06:29 +01:00
Ricardo Wurmus 42f0b0c21e
gnu: Add missing module reference. 
This is a follow-up to commit 05b4b3ea05.

* gnu/packages/python-xyz.scm: Add missing reference to (gnu packages
monitoring).
 2019-02-04 12:05:43 +01:00
Ricardo Wurmus d9b0216b6f
gnu: python-send2trash: Remove duplicates. 
* gnu/packages/python-xyz.scm (python-send2trash, python2-send2trash): Remove
duplicates.
[source]: Fetch from git.
 2019-02-04 11:57:14 +01:00
Ricardo Wurmus 05b4b3ea05
gnu: python-prometheus-client: Remove duplicate. 
* gnu/packages/monitoring.scm (python-prometheus-client): Update to 0.5.0.
* gnu/packages/python-xyz.scm (python-prometheus-client,
python2-prometheus-client): Remove variables.
 2019-02-04 11:46:10 +01:00
Ricardo Wurmus 15218d4e18
gnu: guile-wisp: Update to 0.9.9.1. 
* gnu/packages/guile-xyz.scm (guile-wisp): Update to 0.9.9.1.
[arguments]: Add phases to build and install Emacs files.
[native-inputs]: Add emacs-minimal.
 2019-02-04 11:15:52 +01:00
Vagrant Cascadian 8c00379c47
gnu: 0ad: Update to 0.0.23b-alpha. 
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23b-alpha.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-04 10:49:10 +01:00
Ricardo Wurmus 1e957fabcf
gnu: borg: Make man pages reproducible. 
* gnu/packages/backup.scm (borg)[arguments]: Add
"remove-documentation-timestamps" phase.
 2019-02-04 10:49:10 +01:00
Tobias Geerinckx-Rice 26b7d23aa6
gnu: containerd: Update to 1.2.2. 
* gnu/packages/docker.scm (containerd): Update to 1.2.2.
 2019-02-04 09:39:12 +01:00
Tobias Geerinckx-Rice 17d25019fd
gnu: docker-cli: Use HTTPS home page. 
* gnu/packages/docker.scm (docker-cli)[home-page]: Use HTTPS.
 2019-02-04 09:39:12 +01:00
Tobias Geerinckx-Rice 3cfa236e56
gnu: freeipmi: Update to 1.6.3. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.3.
 2019-02-04 09:39:12 +01:00
Tobias Geerinckx-Rice b29909b40e
gnu: Remove duplicate import from (gnu packages gnome). 
* gnu/packages/messaging.scm (define-module): Remove duplicate module
imports.  Order the remainder alphabetically.
 2019-02-04 09:39:12 +01:00
Tobias Geerinckx-Rice 7a66d8a464
gnu: gnome-mpv: Update to 0.16. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.16.
 2019-02-04 09:39:11 +01:00
Tobias Geerinckx-Rice f0e6859310
gnu: jo: Update to 1.2. 
* gnu/packages/web.scm (jo): Update to 1.2.
 2019-02-04 09:39:11 +01:00
Efraim Flashner 1009e6e7ec
gnu: go@1.4: Build with binutils-gold on armhf and aarch64. 
* gnu/packages/golang.scm (go@1.4)[native-inputs]: Add binutils-gold
for armhf-linux and aarch64-linux.
 2019-02-04 08:07:47 +02:00
Efraim Flashner 28317d4990
gnu: Add binutils-gold. 
This commit is thanks to Guix Days.

* gnu/packages/base.scm (binutils-gold): New variable.
 2019-02-04 08:07:39 +02:00
Vagrant Cascadian 4da4e952dd
gnu: u-boot: Update to 2019.01. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2019.01.
(u-boot-tools): Disable CONFIG_SOUND in sandbox configs.
(u-boot-pinebook)[source]: Remove patches.
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch,
gnu/packages/patches/u-boot-pinebook-dts.patch,
gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch,
gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch,
gnu/packages/patches/u-boot-pinebook-syscon-node.patch,
gnu/packages/patches/u-boot-pinebook-video-bridge.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
 2019-02-04 00:21:48 +01:00
Danny Milosavljevic c7797b75cc
gnu: efilinux: Fix indentation of source code. 
Follow-up to 6adfcbeab1.

* gnu/packages/efi.scm (efilinux): Fix indentation of source code.
 2019-02-04 00:16:47 +01:00
Danny Milosavljevic 6adfcbeab1
gnu: fc-host-tools: Update to 9a. 
* gnu/packages/embedded.scm (fc-host-tools)[source]: Update to 9a.
[arguments]<#:phases>[patch-installation-paths]: Modify.
 2019-02-04 00:14:18 +01:00
Danny Milosavljevic bb4a8f4851
gnu: Add efilinux. 
* gnu/packages/efi.scm (efilinux): New variable.
 2019-02-04 00:14:18 +01:00
Danny Milosavljevic 527aab6f18
gnu: Add efitools. 
* gnu/packages/efi.scm (efitools): New variable.
 2019-02-04 00:14:18 +01:00
Danny Milosavljevic 3da49652ad
gnu: Add sbsigntools. 
* gnu/packages/efi.scm (sbsigntools): New variable.
 2019-02-04 00:14:18 +01:00
Danny Milosavljevic f8ff37d6c0
gnu: Add gnu-efi. 
* gnu/packages/efi.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-02-04 00:14:16 +01:00
Ludovic Courtès 765a5bf167
self: Ensure the daemon refers to the right 'guix' command. 
Previously it would refer to
/var/guix/profiles/per-user/root/current-guix/bin/guix, which would fail
when that profile does not exist.  This is notably the case when using
'channel-instance->package' as done in commit
7e6d8d366a.

* gnu/packages/package-management.scm (guix-daemon)[arguments]: In
'install phase, honor environment variable 'GUIX'.
* guix/self.scm (whole-package)[wrap]: New procedure.
Use it.
 2019-02-04 00:03:30 +01:00
Ricardo Wurmus 6bb5f88e1d
gnu: Add guile-picture-language. 
* gnu/packages/guile-xyz.scm (guile-picture-language): New variable.
 2019-02-03 01:37:38 +01:00
Nicolas Goaziou 7f055a0a37
Update copyright header. 2019-02-02 22:54:12 +01:00
Nicolas Goaziou d90fd183bd
gnu: giac-xcas: Update to 1.5.0-37. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.5.0-37.
 2019-02-02 22:52:05 +01:00
Marius Bakke 8576505422
gnu: libreoffice: Fix FTBFS with Boost 1.69.0. 
* gnu/packages/patches/libreoffice-boost.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add it.
 2019-02-02 20:10:18 +01:00
Kei Kebreau ba259bad59
gnu: milkytracker: Add LHA decompression support. 
* gnu/packages/music.scm (milkytracker)[inputs]: Add lhasa.
 2019-02-02 09:22:17 -05:00
Nicolas Goaziou 8f4d15f1ff
Update some copyright headers 2019-02-02 13:41:46 +01:00
Nicolas Goaziou 5fc843cc63
gnu: wireshark: Update to 2.6.6. 
* gnu/packages/networking.scm (wireshark): Update to 2.6.6.
 2019-02-02 13:39:58 +01:00
Clément Lassieur b2cb16133f
gnu: Fix syntax error in emacs-xyz.scm. 
* gnu/packages/emacs-xyz.scm (emacs-repo): Add missing parentheses and
license.
 2019-02-02 12:55:13 +01:00
Mathieu Othacehe 7106671088
gnu: Add emacs-google-c-style. 
* gnu/packages/emacs-xyz.scm (emacs-google-c-style): New variable.
 2019-02-02 11:42:11 +01:00
Mathieu Othacehe bdccd7e101
gnu: Add emacs-alect-themes. 
* gnu/packages/emacs-xyz.scm (emacs-alect-themes): New variable.
 2019-02-02 11:42:11 +01:00
Nicolas Goaziou c14b3a8d7b
gnu: silkaj: Update to 0.6.5. 
* gnu/packages/finance.scm (silkaj): Update to 0.6.5.
[inputs]: Add python-click, python-dunitpery.  Remove python-pyaes,
python-scrypt, and python-commandlines.
 2019-02-02 11:38:28 +01:00
Nicolas Goaziou 352033f31b
gnu: python-duniterpy: Update to 0.52.0. 
* gnu/packages/finance.scm (python-duniterpy): Update to 0.52.0.
[propagated-inputs]: Add python-pyaes.
 2019-02-02 11:29:50 +01:00
Clément Lassieur 57b663fa8f
gnu: Add emacs-repo. 
* gnu/packages/emacs-xyz.scm (emacs-repo): New variable.
 2019-02-02 11:14:39 +01:00
Clément Lassieur ba25ba903d
gnu: Add emacs-dtrt-indent. 
* gnu/packages/emacs-xyz.scm (emacs-dtrt-indent): New variable.
 2019-02-02 11:14:39 +01:00
Arun Isaac 43af5f9d19
gnu: Add emacs-mkmcc-gnuplot-mode. 
* gnu/packages/emacs-xyz.scm (emacs-mkmcc-gnuplot-mode): New variable.
 2019-02-02 00:31:21 +05:30
Tobias Geerinckx-Rice 389ae5181e
gnu: znc: Update to 1.7.2. 
* gnu/packages/messaging.scm (znc): Update to 1.7.2.
 2019-02-01 17:39:51 +01:00
Leo Famulari 39ea311cbe
gnu: direnv: Update to 2.15.2. 
* gnu/packages/shellutils.scm (direnv): Update to 2.15.2.
[inputs]: Use the default Go compiler. Add go-github-com-burntsushi-toml
and go-github-com-direnv-go-dotenv.
[arguments]: Add a 'setup-go-environment' phase.
 2019-02-01 17:21:13 +01:00
Leo Famulari bc58bb9bdf
gnu: Add go-github-com-direnv-go-dotenv. 
* gnu/packages/golang.scm (go-github-com-direnv-go-dotenv): New variable.
 2019-02-01 17:21:10 +01:00
Pierre Neidhardt c4e4b85397
gnu: emacs-slime: Update to 2.23. 
* gnu/packages/emacs-xyz.scm (emacs-slime): Update to 2.23.
 2019-02-01 17:13:17 +01:00
Leo Famulari 5d5e45850a
gnu: certbot, python-acme: Update to 0.30.2. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.30.2.
 2019-02-01 16:49:44 +01:00
Mark H Weaver 85ca23caba
gnu: linux-libre: Update to 4.20.6. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.6.
(%linux-libre-hash): Update hash.
 2019-01-31 23:59:06 -05:00
Mark H Weaver 65466a2b10
gnu: linux-libre@4.19: Update to 4.19.19. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.19.
(%linux-libre-4.19-hash): Update hash.
 2019-01-31 23:57:57 -05:00
Mark H Weaver 9d5414f1a4
gnu: linux-libre@4.14: Update to 4.14.97. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.97.
(%linux-libre-4.14-hash): Update hash.
 2019-01-31 23:57:06 -05:00
Mark H Weaver 20d32ac279
gnu: linux-libre@4.9: Update to 4.9.154. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.154.
 2019-01-31 23:56:15 -05:00
Eric Bavier 4b444fc5a5
gnu: imb: Update to 2019.1. 
* gnu/packages/benchmark.scm (imb)[source]: Update to 2019.1.  Use
git-download.
[arguments]: Adjust build and install phases for new source organization.  Let
the standard 'install-license-files' phase do its thing.
 2019-01-31 22:12:56 -06:00
Eric Bavier 56d447ba16
gnu: r-rmpi: Setup MPI for tests. 
* gnu/packages/cran.scm (r-rmpi)[arguments]: Add 'mpi-setup phase.
 2019-01-31 22:12:56 -06:00
Eric Bavier eb6785cfe7
gnu: fftw-openmpi: Setup MPI for tests. 
* gnu/packages/algebra.scm (fftw-openmpi)[arguments]: Add 'mpi-setup phase.
 2019-01-31 22:12:56 -06:00
Marius Bakke 0747328e31
Merge branch 'master' into staging 2019-01-31 23:32:56 +01:00
Yoshinori Arai ff75441fcf
gnu: Add xclock. 
* gnu/packages/xorg.scm (xclock): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-01-31 22:34:23 +01:00
Gabriel Hondet 07c82daad4
gnu: Add python-isrcsubmit. 
* gnu/packages/music.scm (python-isrcsubmit): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-01-31 22:01:43 +01:00
Gabriel Hondet 1331a6c07a
gnu: Add python-discid. 
* gnu/packages/music.scm (python-discid): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-01-31 22:01:43 +01:00
Marius Bakke 84243592fe
gnu: lookingglass: Download from git. 
* gnu/packages/virtualization.scm (lookingglass)[source]: Change to GIT-FETCH.
 2019-01-31 20:57:22 +01:00
Marius Bakke cb85742fa8
gnu: hwloc: Update to 2.0.3. 
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.3.
 2019-01-31 20:57:22 +01:00
Marius Bakke 9dd5084589
gnu: hwloc@1: Update to 1.11.12. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.12.
 2019-01-31 20:57:22 +01:00
Marius Bakke 8f8bc40677
gnu: VTK: Update to 8.2.0. 
* gnu/packages/image-processing.scm (vtk): Update to 8.2.0.
 2019-01-31 20:57:21 +01:00
Marius Bakke f1d4f264a2
gnu: VTK: Use HTTPS URLs. 
* gnu/packages/image-processing.scm (vtk)[source, home-page]: Use HTTPS.
 2019-01-31 20:57:21 +01:00
Marius Bakke 3cf3255796
gnu: whois: Update to 5.4.1. 
* gnu/packages/networking.scm (whois): Update to 5.4.1.
 2019-01-31 20:57:21 +01:00
Marius Bakke 8f22bf9e6d
gnu: json-modern-cxx: Fetch from git. 
* gnu/packages/cpp.scm (json-modern-cxx)[source]: Use GIT-FETCH.
[source](snippet): End on #t.
 2019-01-31 20:57:21 +01:00
Marius Bakke 0a3849f610
gnu: httpd: Update to 2.4.38. 
* gnu/packages/web.scm (httpd): Update to 2.4.38.
 2019-01-31 20:57:21 +01:00
Marius Bakke 71cb7512c4
gnu: libwebp: Update to 1.0.2. 
* gnu/packages/image.scm (libwebp): Update to 1.0.2.
 2019-01-31 20:57:21 +01:00
Marius Bakke 39855bfef1
gnu: p11-kit: Update to 0.23.15. 
* gnu/packages/patches/p11-kit-jks-timestamps.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.15.
[source](patches): New field.
 2019-01-31 20:57:21 +01:00
Marius Bakke 7c56237b4c
gnu: i3-wm: Update to 4.16.1. 
* gnu/packages/wm.scm (i3-wm): Update to 4.16.1.
 2019-01-31 20:57:21 +01:00
Marius Bakke b8c0b9c1a3
gnu: msmtp: Update to 1.8.2. 
* gnu/packages/mail.scm (msmtp): Update to 1.8.2.
 2019-01-31 20:57:21 +01:00
Efraim Flashner 9117d6df87
gnu: tcc: Fix building on armhf-linux. 
* gnu/packages/c.scm (tcc)[arguments]: Add 'configure-flag to set the
triplet when building for armhf-linux.
 2019-01-31 18:39:19 +02:00
Efraim Flashner 0270b24b65
gnu: tcc: Mark aarch64-linux as supported. 
* gnu/packages/c.scm (tcc)[supported-systems]: Remove aarch64.
 2019-01-31 17:47:44 +02:00
Ricardo Wurmus 740a335558
gnu: Remove xboing. 
* gnu/packages/games.scm (xboing): Remove variable.
 2019-01-31 16:29:53 +01:00
Ricardo Wurmus 395a95bb75
gnu: guile-hall: Wrap with guile-config. 
* gnu/packages/guile-xyz.scm (guile-hall)[arguments]: Extend
"hall-wrap-binaries" phase to include guile-config in the load path.
 2019-01-31 16:26:22 +01:00
Andreas Enge adba64662c
gnu: Add python-cypari2 and python2-cypari2. 
* gnu/packages/sagemath.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new module.
 2019-01-31 14:58:47 +01:00
Leo Famulari 11d19ca236
gnu: QEMU: Fix CVE-2018-16872 and CVE-2019-6778. 
* gnu/packages/patches/qemu-CVE-2018-16872.patch,
gnu/packages/patches/qemu-CVE-2019-6778.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
 2019-01-31 14:35:48 +01:00
Arun Isaac a382860bd4
gnu: rss-bridge: Update to 2019-01-13. 
* gnu/packages/web.scm (rss-bridge): Update to 2019-01-13.
[source]: Use git-fetch.
[native-inputs]: Remove gzip and tar.
 2019-01-31 16:27:39 +05:30
Rutger Helling e1c3ffcfcd
gnu: scdoc: Update to 1.8.1. 
* gnu/packages/man.scm (scdoc): Update to 1.8.1.
 2019-01-31 10:09:29 +01:00
Nicolas Goaziou 2e484e78cd
gnu: mame: Update to 0.206. 
* gnu/packages/emulators.scm (mame): Update to 0.206.
 2019-01-30 22:59:44 +01:00
Kei Kebreau 0dcea35d9a
gnu: Add lhasa. 
* gnu/packages/compression.scm (lhasa): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-01-30 21:24:01 +01:00
Ricardo Wurmus ba123b6dda
gnu: star: Update to 2.7.0a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.7.0a.
 2019-01-30 15:44:47 +01:00
Mark H Weaver 24886c1389
gnu: icecat: Update to 60.5.0-guix1 [security-fixes]. 
Includes fixes for CVE-2018-18500, CVE-2018-18501, and CVE-2018-18505.

* gnu/packages/gnuzilla.scm (icecat): Update to 60.5.0-guix1.
[version]: Use %icecat-version.
[source]: Inherit from 'icecat-source'.  Remove obsolete patches.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch,
gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch,
gnu/packages/patches/icecat-use-system-media-libs.patch: Adapt to 60.5.0.
 2019-01-29 22:29:42 -05:00
Mark H Weaver 948879eeda
gnu: icecat: Add icecat-source. 
* gnu/packages/gnuzilla.scm (computed-origin-method): New variable.
(%icecat-version, icecat-source): New variables.
* gnu/packages/patches/icecat-makeicecat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-01-29 22:29:40 -05:00
Ludovic Courtès 286bea0dba
gnu: clang-runtime@3.5: Fix compilation on glibc 2.28. 
Reported by zimoun <zimon.toutoune@gmail.com>.

* gnu/packages/llvm.scm (clang-runtime-3.5): Add
"clang-3.5-libsanitizer-ustat-fix.patch".
 2019-01-29 23:46:33 +01:00
Ludovic Courtès b552e307ed
gnu: guile-commonmark: Update to 0.1.2. 
* gnu/packages/guile-xyz.scm (guile-commonmark): Update to 0.1.2.
[source](modules, snippet): Remove.
 2019-01-29 23:46:33 +01:00
Ludovic Courtès db9771a9a9
gnu: guile-git: Update to 0.2.0. 
* gnu/packages/guile.scm (guile-git): Update to 0.2.0.
 2019-01-29 23:46:33 +01:00
Leo Famulari f5eb570c59
gnu: Mutt: Update to 1.11.2. 
* gnu/packages/mail.scm (mutt): Update to 1.11.2.
 2019-01-29 15:52:33 -05:00
Ricardo Wurmus 631337063e
gnu: Add texlive-latex-beamer. 
* gnu/packages/tex.scm (texlive-latex-beamer): New variable.
 2019-01-29 17:18:23 +01:00
Ricardo Wurmus 1d4c2dabef
gnu: texlive-latex-seminar: Copy files to output. 
* gnu/packages/tex.scm (texlive-latex-seminar)[build-system]: Use
trivial-build-system.
[arguments]: Copy files to output.
 2019-01-29 14:07:03 +01:00
Mathieu Lirzin 9e532ae22a
gnu: clojure: Update to 1.10.0. 
* gnu/packages/clojure.scm (clojure): Update to 1.10.0.
[source]: Use 'git-fetch'.
 2019-01-29 10:59:06 +01:00
Rutger Helling b412ddcb1a
gnu: kitty: Update to 0.13.3. 
* gnu/packages/terminals.scm (kitty): Update to 0.13.3.
[inputs]: Replace python2-pygments with python-pygments. Add wayland.
[arguments]: Add 'hard-code-libegl phase.
 2019-01-29 10:10:06 +01:00
Efraim Flashner 23c2598233
gnu: x265: Update to 3.0. 
* gnu/packages/video.scm (x265): Update to 3.0.
[source]: Remove patch.
* gnu/packages/patches/x265-detect512-all-arches.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-29 10:07:58 +02:00
Ludovic Courtès db7c901af1
gnu: guix: Update to 4bddd12. 
* gnu/packages/package-management.scm (guix): Update to 4bddd12.
 2019-01-28 23:52:20 +01:00
Ricardo Wurmus 66abc619d5
gnu: Add missing file. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/installer/newt/user.scm.
 2019-01-28 23:28:46 +01:00
Gábor Boskovits 95bc85b7da
gnu: Add openjdk 11. 
* gnu/packages/java.scm (openjdk11): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-28 23:15:27 +01:00
Meiyo Peng 4bddd12ad5
gnu: fish: Use fish-foreign-env to source /etc/profile. 
* gnu/packages/shells.scm (fish): Use fish-foreign-env to source /etc/profile
  when user logs in.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Meiyo Peng 1d962fc0a1
gnu: Add fish-foreign-env. 
* gnu/packages/shells.scm (fish-foreign-env): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Meiyo Peng e1dba5bea0
gnu: fish: Update to 3.0.0. 
* gnu/packages/shells.scm (fish): Update to 3.0.0.
  [source]: Remove dead URL.
  [inputs]: Remove bc.  Replace python-wrapper with python.
  [arguments]: Remove configure-flags.  Enable fish to source
  /etc/fish/config.fish.  Enable completions, functions and configurations
  in user's and system's guix profiles.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Ludovic Courtès f15800946d
gnu: youtube-dl: Update to 2019.01.27. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.27.
 2019-01-28 23:13:40 +01:00
Ricardo Wurmus 5a23696a47
gnu: fastcap: Fix build and use INVOKE. 
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive-tiny
with a texlive-union including texlive-fonts-amsfonts.
[arguments]: Use INVOKE in build phases.
 2019-01-28 20:30:20 +01:00
Ricardo Wurmus ad34338d1e
gnu: scons: Update to 3.0.3. 
Fixes <https://bugs.gnu.org/34236>.

* gnu/packages/python-xyz.scm (scons): Update to 3.0.3.
[arguments]: Add "bootstrap" phase.
 2019-01-28 20:09:51 +01:00
Ricardo Wurmus 1d1e3676ba
gnu: r-genomicfeatures: Update to 1.34.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus ea0eaf537a
gnu: r-variantannotation: Update to 1.28.10. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.10.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus df00ca25bc
gnu: r-rmpfr: Update to 0.7-2. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.7-2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 61cb2e3133
gnu: r-waveslim: Update to 1.7.5.1. 
* gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.1.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 0207ad9ee8
gnu: r-activity: Update to 1.2. 
* gnu/packages/cran.scm (r-activity): Update to 1.2.
[propagated-inputs]: Remove r-overlap.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 211628044e
gnu: r-emmeans: Update to 1.3.2. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 62595ee342
gnu: r-th-data: Update to 1.0-10. 
* gnu/packages/cran.scm (r-th-data): Update to 1.0-10.
 2019-01-28 16:27:35 +01:00