Efraim Flashner
|
a916c82649
|
gnu: man-pages: Update to 4.04.
* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
|
2016-01-11 09:37:50 +02:00 |
Taylan Ulrich Bayırlı/Kammer
|
ce9a304251
|
build: Fix out-of-tree building of documentation.
* doc.am (.dot.png, .dot.pdf, .dot.eps): Put the generated files into
$(srcdir).
|
2016-01-10 22:30:29 +01:00 |
Ben Woodcroft
|
9b9b7ffd8e
|
gnu: bedtools: Update to 2.25.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
|
2016-01-11 00:36:13 +10:00 |
Ben Woodcroft
|
6573ac82ad
|
gnu: bedtools: Use modify-phases.
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
|
2016-01-11 00:36:13 +10:00 |
Andreas Enge
|
695bea9803
|
gnu: r: Update to 3.2.3.
* gnu/packages/statistics.scm (r): Update to 3.2.3.
|
2016-01-09 23:18:28 +01:00 |
Andreas Enge
|
13035f5a03
|
gnu: icecat: Update to 38.5.2-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
|
2016-01-09 22:51:28 +01:00 |
Ben Woodcroft
|
4c40fa0229
|
gnu: ruby-2.1: Update to 2.1.8.
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
|
2016-01-09 14:53:58 +10:00 |
Leo Famulari
|
f32274a71e
|
gnu: i2c-tools: Update source and home-page URLs.
* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
|
2016-01-08 16:42:27 -05:00 |
Leo Famulari
|
3a04d5d4e4
|
gnu: lm-sensors: Update source and home-page URLs.
* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
|
2016-01-08 16:42:27 -05:00 |
Mark H Weaver
|
bea25ae83c
|
gnu: nss: Update to 3.21 [fixes CVE-2015-7575].
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
[arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
|
2016-01-08 15:29:50 -05:00 |
Ludovic Courtès
|
17ad0a2714
|
build-system/python: 'pypi-uri' takes an optional file name extension.
Suggested by swedebugia <swedebugia@riseup.net>.
* guix/build-system/python.scm (pypi-uri): Add 'extension' parameter and
use it.
|
2016-01-08 19:06:26 +01:00 |
Mathieu Lirzin
|
2409f37f28
|
gnu: Add missing (gnu packages gcc) import.
* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
|
2016-01-08 14:18:46 +01:00 |
Mathieu Lirzin
|
9ef824c10e
|
gnu: xterm: Update to 322.
* gnu/packages/xorg.scm (xterm): Update to 322.
|
2016-01-08 14:12:29 +01:00 |
宋文武
|
a65e26f091
|
gnu: epiphany: Update to 3.18.2.
* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
|
2016-01-08 17:34:08 +08:00 |
宋文武
|
19e5258d84
|
gnu: webkitgtk: Update to 2.10.4.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
|
2016-01-08 17:34:08 +08:00 |
宋文武
|
c0a9589da2
|
doc: Document network-manager-service.
* doc/guix.texi (Networking Services): Document network-manager-service.
|
2016-01-08 08:06:40 +08:00 |
Ludovic Courtès
|
b110869dd3
|
doc: Add elaborate package search example.
* doc/guix.texi (Invoking guix package): Add elaborate --search example
using recsel and sexes.
|
2016-01-08 00:09:50 +01:00 |
Pjotr Prins
|
c8d969b58f
|
gnu: Add Pfff.
* gnu/packages/textutils.scm (pfff): New variable.
|
2016-01-07 21:13:35 +01:00 |
Alex Kost
|
fbbaa4dde8
|
gnu: mpv: Remove 'samba' input.
This is a heavy-weight and uncommon feature. See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>.
* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
|
2016-01-07 22:30:18 +03:00 |
Alex Kost
|
0a5ec7092d
|
emacs: Display supported systems in "Package Info".
* emacs/guix-main.scm (%package-param-alist): Add 'systems'.
* emacs/guix-ui-package.el (guix-package-info-insert-systems): New
procedure.
(guix-package-info-format): Add it.
(guix-output-info-format): Likewise.
(guix-package-info-titles): Add "Supported systems" title.
|
2016-01-07 22:30:18 +03:00 |
Ricardo Wurmus
|
cb933df6da
|
gnu: Add genomation.
* gnu/packages/bioinformatics.scm (r-genomation): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
03ea5a357e
|
gnu: Add seqPattern.
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
c43a011de3
|
gnu: Add impute.
* gnu/packages/bioinformatics.scm (r-impute): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
c63cef6699
|
gnu: Add BSgenome.
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
fbf6045e33
|
gnu: Add plotly.
* gnu/packages/statistics.scm (r-plotly): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
a28d646b63
|
gnu: Add viridis.
* gnu/packages/statistics.scm (r-viridis): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
d547ce5e70
|
gnu: Add topGO.
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
e05c37da4a
|
gnu: Add matrixStats.
* gnu/packages/statistics.scm (r-matrixstats): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
3703ffb41f
|
gnu: Add R.rsp.
* gnu/packages/statistics.scm (r-r-rsp): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
a63efbb453
|
gnu: Add R.cache.
* gnu/packages/statistics.scm (r-r-cache): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
9c94b53b5b
|
gnu: Add R.utils.
* gnu/packages/statistics.scm (r-r-utils): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
c8c75a8d88
|
gnu: Add R.oo.
* gnu/packages/statistics.scm (r-r-oo): New variable.
|
2016-01-07 17:18:17 +01:00 |
Ricardo Wurmus
|
8bfe007c9c
|
gnu: Add R.methodsS3.
* gnu/packages/statistics.scm (r-r-methodss3): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
a69a593595
|
gnu: Add base64enc.
* gnu/packages/statistics.scm (r-base64enc): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
a8227e4ae9
|
gnu: Add DT.
* gnu/packages/statistics.scm (r-dt): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
d706257b5b
|
gnu: Add SparseM.
* gnu/packages/statistics.scm (r-sparsem): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
fb25d8803f
|
gnu: Add GO.db.
* gnu/packages/bioinformatics.scm (r-go-db): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
2fd7c04984
|
gnu: Add GenomicFeatures.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
317755ff0f
|
gnu: Add rtracklayer.
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
d8a828af78
|
gnu: Add GenomicAlignments.
* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
6e76dda2d0
|
gnu: Add SummarizedExperiment.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
f8d74f7018
|
gnu: Add Rsamtools.
* gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
bf15935337
|
gnu: Add Biostrings.
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
e91d362e48
|
gnu: Add BiocParallel.
* gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
c465fa72ed
|
gnu: Add biomaRt.
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
8b7bce740d
|
gnu: Add AnnotationDbi.
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
555e3399dc
|
gnu: Add Biobase.
* gnu/packages/bioinformatics.scm (r-biobase): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
bc899123e7
|
gnu: Add snow.
* gnu/packages/statistics.scm (r-snow): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
6b82f56cf9
|
gnu: Add futile.logger.
* gnu/packages/statistics.scm (r-futile-logger): New variable.
|
2016-01-07 17:18:16 +01:00 |
Ricardo Wurmus
|
b9ff33b50e
|
gnu: Add futile.options.
* gnu/packages/statistics.scm (r-futile-options): New variable.
|
2016-01-07 17:18:16 +01:00 |