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Author SHA1 Message Date
Andy Patterson 932b2ea206
gnu: ecl: Use "kernel-headers" instead of "linux-headers" to designate input. 
* gnu/packages/lisp.scm (ecl)[arguments]: Use "kernel-headers" as the
identifier for an input.

This is a follow-up to commit 55de892b43.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-07-31 20:13:16 +02:00
Andreas Enge 42bf34298e
gnu: rapicorn: Add patch to handle isnan. 
* gnu/packages/patches/rapicorn-isnan.patch: New file.
* gnu/packages/graphics.scm (rapicorn)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
 2016-07-31 18:16:25 +02:00
Andreas Enge acac969fa2
gnu: fastcap: Add input ghostscript. 
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Add ghostscript.

This is a follow-up to commit e83a13faa2.
 2016-07-31 17:11:15 +02:00
Andreas Enge dceba1c19b
gnu: zsh: Update to 5.2. 
* gnu/packages/zsh.scm (zsh): Update to 5.2.
 2016-07-31 17:05:36 +02:00
Andreas Enge ce430bd637
gnu: tcc: Use "kernel-headers" instead of "linux-headers" to designate input. 
* gnu/packages/c.scm (tcc)[arguments]: Use "kernel-headers" as identifier
for an input.

This is a follow-up to commit 55de892b43.
 2016-07-31 16:50:12 +02:00
Andreas Enge 70a967209c
gnu: dealii: Unregister deleted patch. 
* gnu/local.mk (dist_patch_DATA): Drop deleted patch.

This is a follow-up to commit 101e847294.
 2016-07-31 16:37:39 +02:00
Andreas Enge 101e847294
gnu: dealii: Update to 8.4.1. 
* gnu/packages/maths.scm (dealii): Update to 8.4.1.
* gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
 2016-07-31 15:22:41 +02:00
Andreas Enge 7b995c7bcb
gnu: wine: Update to 1.9.15. 
* gnu/packages/wine.scm (wine): Update to 1.9.15.
 2016-07-31 12:11:05 +02:00
Andreas Enge bb484529cc
gnu: python-alembic: Update to 0.8.7. 
* gnu/packages/python.scm (python-alembic): Update to 0.8.7.
 2016-07-31 11:18:53 +02:00
Andreas Enge 33906d54c1
gnu: perl-xml-libxml: Update to 2.0128. 
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0128.
 2016-07-31 09:55:14 +02:00
宋文武 85860fdf82
gnu: glibc-locales: Fix build. 
* gnu/packages/patches/glibc-locales.patch: Adjust to glibc-2.23.
* gnu/packages/base.scm (glibc-locales)[arguments]:
Pass 'lib_cv_complocaledir'.
 2016-07-31 10:42:47 +08:00
Tomáš Čech 2fa66f451a
gnu: mutt: Update to 1.6.2. 
* gnu/packages/mail.scm(mutt): Update to 1.6.2.
 2016-07-30 22:37:56 +02:00
Kei Kebreau 4bc37bf0c3
gnu: Add python-pygame. 
* gnu/packages/game-development.scm (python-pygame): New variable.
 2016-07-30 14:32:49 -04:00
Kei Kebreau d8841cc52e
gnu: Add libsmpeg. 
* gnu/packages/video.scm (libsmpeg): New variable.
 2016-07-30 14:31:58 -04:00
Leo Famulari 6661db4e97
gnu: stellarium: Improve description. 
Suggested by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/education.scm (stellarium)[description]: Mention telescope
tracking.
 2016-07-30 10:05:44 -04:00
Ludovic Courtès c2c54ebd91
gnu: Add glibc 2.22. 
* gnu/packages/base.scm (glibc-2.22): New variable.
(glibc-2.21): Inherit from it; remove 'arguments' field.
 2016-07-30 15:47:28 +02:00
Ludovic Courtès 716753cb97
tests: base: Correct invalid merge. 
Fixes a regression introduced by merge commit
7575655212.

* gnu/tests/base.scm (run-basic-test)[test]: Fix list of 'use-modules'
and 'test-begin' call.
 2016-07-30 15:47:28 +02:00
Ben Woodcroft c4382cd18f
gnu: diamond: Update to 0.8.17. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.17.
 2016-07-30 23:02:57 +10:00
ng0 9b12bc7032
gnu: gnunet-gtk: Configure with gnunet path. 
* gnun/packages/gnunet.scm (gnunet-gtk)[arguments]: Add '--with-gnunet'
to #:configure-flags.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-07-30 15:33:57 +08:00
Eric Bavier d25639731a
gnu: Add tuxpaint-config. 
* gnu/packages/games.scm (tuxpaint-config): New variable.
 2016-07-29 23:17:44 -05:00
Eric Bavier c3d850f232
gnu: Add tuxpaint-stamps. 
* gnu/packages/games.scm (tuxpaint-stamps): New variable.
 2016-07-29 21:50:15 -05:00
Eric Bavier 9b1ada4e81
gnu: Add Tux Paint. 
* gnu/packages/games.scm (tuxpaint): New variable.
* gnu/packages/patches/tuxpaint-stamps-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-29 21:50:15 -05:00
Alex Griffin 23319ed674
gnu: beets: Update to 1.3.19. 
* gnu/packages/music.scm (beets): Update to 1.3.19.
[source]: Remove patch to skip failing tests.
* gnu/packages/patches/beets-image-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-29 19:19:49 -04:00
Leo Famulari d1c9d3bb42
gnu: python-protobuf: Update to 3.0.0. 
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf):
Update to 3.0.0.
 2016-07-29 19:04:31 -04:00
Leo Famulari 48b7e4a6c1
gnu: btrfs-progs: Update to 4.6.1 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.6.1.
[native-inputs]: Add WHICH.
 2016-07-29 18:58:48 -04:00
Mark H Weaver 359aba76b6
Merge branch 'master' into core-updates 2016-07-29 18:29:58 -04:00
Mark H Weaver 9bdf56dc13
gnu: gd: Add fix for gd2_read test. 
* gnu/packages/patches/gd-fix-gd2-read-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add patch.
 2016-07-29 18:28:40 -04:00
Leo Famulari de30a6e0f0
gnu: protobuf: Update to 2.6.1. 
* gnu/packages/protobuf.scm (protobuf): Update to 2.6.1.
[source]: Update to new upstream URL.
 2016-07-29 16:41:06 -04:00
Mark H Weaver 31c995f8af
Revert "gnu: gd: Add fix for gd2_read test." 
This reverts commit ce290354ec.
 2016-07-29 16:17:35 -04:00
Mark H Weaver ce290354ec
gnu: gd: Add fix for gd2_read test. 
* gnu/packages/patches/gd-fix-gd2-read-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add patch.
 2016-07-29 16:06:43 -04:00
Leo Famulari 814572aff5
gnu: wireshark: Update to 2.0.5. 
* gnu/packages/networking.scm (wireshark): Update to 2.0.5.
 2016-07-29 15:08:55 -04:00
Leo Famulari d260015062
gnu: perl-dbd-mysql: Update to 4.035 [fixes CVE-2015-8949]. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.035.
 2016-07-29 14:49:30 -04:00
Mark H Weaver 0bab3af078
Merge branch 'master' into core-updates 2016-07-29 14:18:07 -04:00
Mark H Weaver 682a7d2338
gnu: linux-libre@4.4: Update to 4.4.16. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.16.
 2016-07-29 14:14:25 -04:00
Mark H Weaver a81445737d
gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch,
gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files.
* gnu/packages/patches/gd-fix-tests-on-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gd.scm (gd): Update to 2.2.3.
[source]: Update patches field accordingly.
 2016-07-29 13:56:39 -04:00
Leo Famulari f54510d29b
gnu: virt-viewer: Remove SPICE-PROTOCOL from inputs. 
This is a followup to ba9e2ee64a.

* gnu/packages/spice.scm (virt-viewer)[inputs]: Remove SPICE-PROTOCOL.
 2016-07-29 12:50:29 -04:00
Leo Famulari 3c4a8f03a2
gnu: spice-gtk: Remove LIBUSB from inputs. 
This is a followup to 0d05a739d2.

* gnu/packages/spice.scm (spice-gtk)[inputs]: Remove LIBUSB.
 2016-07-29 12:50:29 -04:00
David Craven efcada41e7
gnu: Order module imports in (gnu packages qemu) alphabetically. 
* gnu/packages/qemu.scm: Order module imports alphabetically.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:43:55 +02:00
David Craven 6799ed7614
gnu: Add xf86-video-qxl. 
* gnu/packages/xorg.scm (xf86-video-qxl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:41:30 +02:00
David Craven c38fb02e9b
gnu: Add libinput-minimal. 
* gnu/packages/freedesktop.scm (libinput-minimal): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:40:24 +02:00
David Craven 66e076642c
gnu: Remove trailing periods from synopsis. 
* gnu/packages/emacs.scm (emacs-smart-mode-line): Update synopsis.
* gnu/packages/gnustep.scm (wmfire): Update synopsis.
* gnu/packages/haskell.scm (ghc-socks): Update synopsis.
* gnu/packages/kde-frameworks.scm (oxygen-icons): Update synopsis.
* gnu/packages/openstack.scm (python-bandit): Update synopsis.
* gnu/packages/perl.scm (perl-test-trap): Update synopsis.
* gnu/packages/python.scm (python-backports-abc): Update synopsis.
* gnu/packages/ruby.scm (python-cryptography-vectors): Update synopsis.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:37:22 +02:00
David Craven 0160458bf8
gnu: Use define-public to export packages. 
* gnu/packages/bison.scm (bison): Define public.
* gnu/packages/flex.scm (flex): Define public.
* gnu/packages/pulseaudio.scm (libsndfile, libsamplerate, pulseaudio): Define
public.
* gnu/packages/sdl.scm (sdl, sdl2, libmikmod, sdl-gfx, sdl-image, sdl-mixer,
sdl-net, sdl-ttf): Define public.
* gnu/packages/search.scm (xapian): Remove unnecessary #:export.
* gnu/packages/swig.scm (swig): Define public.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:35:20 +02:00
Ludovic Courtès 35e4b3d546
gnu: iptables: Mention "firewall". 
Suggested by ng0 <ng0@we.make.ritual.n0.is>.

* gnu/packages/linux.scm (iptables)[description]: Mention "firewall".
 2016-07-29 17:32:03 +02:00
Eric Le Bihan 7c6bdeec23
gnu: Add s6-networking. 
* gnu/packages/skarnet.scm (s6-networking): New variable.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:29:50 +02:00
Eric Le Bihan 798b776deb
gnu: Add s6-dns. 
* gnu/packages/skarnet.scm (s6-dns): New variable.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:29:50 +02:00
Eric Le Bihan 918cee467d
gnu: Add s6. 
* gnu/packages/skarnet.scm (s6): New variable.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:29:50 +02:00
Eric Le Bihan 2f016ac150
gnu: execline: Update to 2.1.5.0. 
* gnu/packages/skarnet.scm (execline): Update to 2.1.5.0.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:29:50 +02:00
Eric Le Bihan 892aa89477
gnu: skalibs: Update to 2.3.10.0. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.3.10.0.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:29:50 +02:00
Danny Milosavljevic 2614de3c5a
gnu: Add stellarium. 
* gnu/local.mk: Include gnu/packages/education.scm .
* gnu/packages/education.scm: Add new file.
* gnu/packages/education.scm (stellarium): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 17:29:50 +02:00
Leo Famulari ba9e2ee64a
gnu: spice-gtk: Propagate SPICE-PROTOCOL. 
* gnu/packages/spice.scm (spice-gtk)[inputs]: Move SPICE-PROTOCOL to...
[propagated-inputs]: ... here.
 2016-07-29 11:16:23 -04:00
Leo Famulari 0d05a739d2
gnu: usbredir: Propagate LIBUSB. 
* gnu/packages/spice.scm (usbredir)[inputs]: Replace field with ...
[propagated-inputs]: ... new field.
 2016-07-29 11:16:23 -04:00
Ludovic Courtès 6e6ddebf48
gnu: guix: Add dependency on zlib. 
* gnu/packages/package-management.scm (guix-0.10.0)[inputs]: Add ZLIB.
 2016-07-29 11:39:30 +02:00
Alex Griffin 61201e46a7
gnu: password-store: Wrap PATH. 
* gnu/packages/password-utils.scm (password-store)
[arguments]: Wrap PATH more thoroughly.
[native-inputs]: Move getopt to inputs.
[inputs]: Add sed.

Signed-off-by: Mathieu Lirzin <mthl@gnu.org>
 2016-07-29 11:00:31 +02:00
Ludovic Courtès f33e71fca2
gnu: perl-dbd-pg: Add description. 
* gnu/packages/databases.scm (perl-dbd-pg)[description]: Add non-empty
description.
 2016-07-29 10:22:31 +02:00
Ludovic Courtès a3947cb1b8
gnu: Sync GNU descriptions with upstream. 
From 'guix lint -c gnu-description'.

* gnu/packages/gnunet.scm (gnunet): Adjust description.
* gnu/packages/marst.scm (marst): Likewise.
* gnu/packages/maths.scm (c-graph): Likewise.
* gnu/packages/networking.scm (macchanger): Likewise.
 2016-07-29 10:13:12 +02:00
Nicolas Goaziou c777570b57
gnu: Add sshpass. 
* gnu/packages/ssh.scm (sshpass): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-29 00:04:39 +02:00
Leo Famulari cfbb3b0d00
gnu: python-beautifulsoup4: Update to 4.5.0. 
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
Update to 4.5.0.
 2016-07-28 17:50:52 -04:00
ng0 adca268e97
gnu: perl-devel-symdump: Update to 2.17. 
* gnu/packages/perl.scm (perl-devel-symdump): Update to 2.17.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-28 17:41:06 -04:00
David Craven 6144dff516
gnu: Add virt-viewer. 
* gnu/packages/spice.scm (virt-viewer): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-28 17:08:42 -04:00
David Craven 33b0f4a4b2
gnu: Add spice-vdagent. 
* gnu/packages/spice.scm (spice-vdagent): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-28 17:08:42 -04:00
David Craven 3cbd37e440
gnu: Add spice. 
* gnu/packages/spice.scm (spice): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-28 17:08:42 -04:00
David Craven bb28cf90e9
gnu: Add spice-gtk. 
* gnu/packages/spice.scm (spice-gtk): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-28 17:08:42 -04:00
David Craven 289e472f56
gnu: Add spice-protocol. 
* gnu/packages/spice.scm (spice-protocol): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-28 17:08:41 -04:00
David Craven 2ef2654de4
gnu: Add virglrenderer. 
* gnu/packages/spice.scm (virglrenderer): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-28 17:08:41 -04:00
David Craven 1d2c67c11e
gnu: Add usbredir. 
* gnu/packages/spice.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-28 17:08:41 -04:00
Leo Famulari 49d725a108
Merge branch 'master' into core-updates 2016-07-28 16:46:27 -04:00
Leo Famulari a1dfa02233
Revert "gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]." 
This reverts commit ae46cd0e4c.
 2016-07-28 16:45:02 -04:00
Mark H Weaver 622c22ccb4
Merge branch 'master' into core-updates 2016-07-28 14:13:26 -04:00
Mark H Weaver ae46cd0e4c
gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch,
gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files.
* gnu/packages/patches/gd-fix-tests-on-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gd.scm (gd): Update to 2.2.3.
[source]: Update patches field accordingly.
 2016-07-28 14:06:12 -04:00
Ludovic Courtès 386b71d1b9
gnu: commencement: 'guile-final' is now "hidden". 
This way, we no longer have this annoying warning:

  $ guix build guile -n
  guix build: warning: ambiguous package specification `guile'
  guix build: warning: choosing guile-2.0.11 from gnu/packages/guile.scm:128:2

* gnu/packages/commencement.scm (guile-final): Use 'hidden-package'.
* tests/packages.scm ("fold-packages, hidden package"): New test.
 2016-07-28 18:53:13 +02:00
Ludovic Courtès 6980511b73
packages: Add 'hidden-package'. 
* guix/packages.scm (hidden-package, hidden-package?): New procedures.
* gnu/packages.scm (fold-packages): Filter out 'hidden-package?'.
* tests/packages.scm ("hidden-package"): New test.
 2016-07-28 18:50:43 +02:00
Alex Griffin cb55f9c652
gnu: Add asciinema. 
* gnu/packages/terminals.scm (asciinema): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-28 15:43:40 +02:00
Alex Griffin 71d9b98078
gnu: gnome: Propagate file-roller. 
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add file-roller.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-28 15:42:30 +02:00
Ludovic Courtès 212163f8d5
gnu: dico: Patch 'idxgcide' bug. 
* gnu/packages/patches/dico-idxgcide-bug.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-28 14:18:59 +02:00
Ludovic Courtès c6b3dc69bd
gnu: vlc: Drop -ffast-math from the compilation flags. 
* gnu/packages/video.scm (vlc)[arguments]: Add "ac_cv_c_fast_math=no" to
  #:configure-flags.
 2016-07-28 13:56:05 +02:00
Ben Woodcroft 6547708f71
gnu: r-genomicfeatures: Update to 1.24.5. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5.
 2016-07-28 21:54:44 +10:00
Ben Woodcroft 2c9f6251fc
gnu: r-bsgenome: Update to 1.40.1. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1.
 2016-07-28 21:45:17 +10:00
Ben Woodcroft b0f0778a7c
gnu: r-iranges: Update to 2.6.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
 2016-07-28 21:45:17 +10:00
Ben Woodcroft f403941f81
gnu: r-limma: Update to 3.28.17. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
 2016-07-28 21:45:16 +10:00
Ben Woodcroft 2b2ff0bd91
gnu: r-xvector: Update to 0.12.1. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
 2016-07-28 21:45:16 +10:00
Ben Woodcroft a463055862
gnu: r-genomicranges: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2.
 2016-07-28 21:45:16 +10:00
Ben Woodcroft bab15ccec4
gnu: r-annotationdbi: Update to 1.34.4. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4.
 2016-07-28 21:45:15 +10:00
Ben Woodcroft a22999f245
gnu: r-biocparallel: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
 2016-07-28 21:45:15 +10:00
Ben Woodcroft d104fc607d
gnu: r-biostrings: Update to 2.40.2. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
 2016-07-28 21:45:15 +10:00
Ben Woodcroft 1864e051c9
gnu: r-summarizedexperiment: Update to 1.2.3. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
 2016-07-28 21:45:15 +10:00
Ben Woodcroft 29b0cc8ad5
gnu: r-genomicalignments: Update to 1.8.4. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
 2016-07-28 21:45:14 +10:00
Ben Woodcroft 5131e21064
gnu: r-rtracklayer: Update to 1.32.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
 2016-07-28 21:45:14 +10:00
Ben Woodcroft 2a3e325f5e
gnu: r-genomeinfodb: Update to 1.8.3. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
 2016-07-28 21:45:14 +10:00
Ben Woodcroft ae32c58e28
gnu: r-bsgenome: Update to 1.40.1. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft e426cd7421
gnu: r-iranges: Update to 2.6.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 1c4ad6076c
gnu: r-limma: Update to 3.28.17. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft bd0cc37834
gnu: r-xvector: Update to 0.12.1. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 362f39d667
gnu: r-genomicranges: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft ae60f3801a
gnu: r-annotationdbi: Update to 1.34.4. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 7a0594fb5d
gnu: r-biocparallel: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 658f36e569
gnu: r-biostrings: Update to 2.40.2. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 0d159d84e2
gnu: r-summarizedexperiment: Update to 1.2.3. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 722b4c919d
gnu: r-genomicalignments: Update to 1.8.4. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 380d3f8657
gnu: r-rtracklayer: Update to 1.32.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 303163c7b9
gnu: r-genomeinfodb: Update to 1.8.3. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft 2d88825183
gnu: r-genomicfeatures: Update to 1.24.5. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5.
 2016-07-28 21:35:40 +10:00
Ben Woodcroft d6dfc39f68
gnu: r-s4vectors: Update to 0.10.2. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
 2016-07-28 12:31:22 +02:00
Ben Woodcroft f2e791750b
gnu: r-s4vectors: Update to 0.10.2. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
 2016-07-28 20:13:42 +10:00
Andreas Enge 4320c1c39f
gnu: asymptote: Add native input gs. 
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Add gs.

This is a follow-up to commit d8eb912132.
 2016-07-28 11:34:57 +02:00
Andreas Enge e309c75610
Merge remote-tracking branch 'origin/master' into core-updates 2016-07-28 11:08:55 +02:00
Leo Famulari e335b82c4e
gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}]. 
* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
 2016-07-28 02:08:49 -04:00
Tomáš Čech 46e4e84ffc
gnu: the-silver-searcher: Update to 0.32.0. 
* gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0.
 2016-07-28 08:05:04 +02:00
Leo Famulari 8e5d8b1880
gnu: imagemagick: Update to 6.9.5-3. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3.
 2016-07-27 23:25:13 -04:00
Leo Famulari ff7172feae
gnu: mariadb: Update to 10.1.16. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.16.
 2016-07-27 23:25:08 -04:00
Ludovic Courtès 1bb163b0dd
gnu: python@2.7: Delete faulty test on mips64el only. 
This amends 8b732bf6d9 and avoids a
rebuild.

* gnu/packages/python.scm (python-2.7)[arguments] <pre-check>:
When (%current-system) starts with "mips64el", delete
Lib/test/test_ctypes.py.
 2016-07-28 00:58:40 +02:00
Alex Griffin b111bdb667
gnu: calibre: Update to 2.63.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.63.0.
[inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.

* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.

Signed-off-by: Roel Janssen <roel@gnu.org>
 2016-07-27 23:45:16 +02:00
Carlos Sánchez de La Lama cad7e6abaf
system: Source /etc/environment before $HOME/.guix-profile/etc/profile. 
* gnu/system.scm (operating-system-etc-service) <profile>: Move sourcing
of /etc/environment before that of $HOME/.guix-profile/etc/profile.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-27 23:08:20 +02:00
Andreas Enge 8b732bf6d9
gnu: python-2.7: Disable test failing on mips64el-linux. 
* gnu/packages/python.scm (python-2.7)[source]: In a snippet, remove
an additional test that fails on mips64el-linux.
 2016-07-27 18:24:12 +02:00
Ben Woodcroft 9712ef8d42
gnu: krona-tools: Update to 2.7. 
* gnu/packages/web.scm (krona-tools): Update to 2.7.
[arguments]: Delete 'build' phase.  Install new scripts.
 2016-07-27 23:39:56 +10:00
Ben Woodcroft 12c8f210ee
gnu: diamond: Update to 0.8.16. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
 2016-07-27 23:17:57 +10:00
Andreas Enge fd6830b3a6
gnu: guix: Update revision number in version. 
This is a follow-up to commit 95af24a2f1.
Reported by Alex Kost <alezost@gmail.com>.
 2016-07-27 15:16:17 +02:00
Andreas Enge 0072b3d3f2
gnu: skribilo: Add input ghostscript-gs. 
* gnu/packages/engineering.scm (lout)[native-inputs]: Add ghostscript-gs.

This is a follow-up to commit d8eb912132.
 2016-07-27 14:47:15 +02:00
Alex Griffin 46bd451520
gnu: magit: Fix rebase commands that require perl. 
* gnu/packages/emacs.scm (magit)[inputs]: Add 'perl'.
[arguments]: Adjust 'patch-exec-paths' phase to make some rebase
commands find 'perl'.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-07-27 11:15:45 +03:00
Tobias Geerinckx-Rice 82ee141bab
gnu: Add httping. 
* gnu/packages/networking.scm (httping): New variable.
 2016-07-27 03:59:47 +02:00
Tobias Geerinckx-Rice 42ff54d5fa
gnu: Add missing copyright symbol. 
* gnu/packages/networking.scm: Add missing "©" to header comments.
 2016-07-27 03:59:47 +02:00
ng0 ae83dcf6ba
gnu: gmime: Remove 'gpg' to 'gpg2' substitution. 
* gnu/packages/mail.scm (gmime)[arguments]: Remove the substitution which
previously changed 'gpg' to 'gpg2' in 'patch-paths-in-tests' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-26 19:43:54 -04:00
Andreas Enge 5425269bf7
gnu: lout: Add input ghostscript. 
* gnu/packages/lout.scm (lout)[native-inputs]: Add ghostscript, needed for ps2pdf.
 2016-07-26 23:28:55 +02:00
Andreas Enge 02b934e2c6
gnu: lout: Make ghostscript-gs a native input. 
* gnu/packages/lout.scm (lout)[inputs]: Move to native-inputs.
 2016-07-26 23:09:01 +02:00
Andreas Enge 5ef469ce31
gnu: lout: Build with ghostscript-gs. 
* gnu/packages/engineering.scm (lout)[inputs]: Replace GHOSTSCRIPT by
GHOSTSCRIPT-GS.

This is a follow-up to commit d8eb912132.
 2016-07-26 23:08:00 +02:00
Andreas Enge d3896fc4ce
gnu: dmd: Remove package, superseded by shepherd. 
* gnu/packages/admin.scm (dmd): Remove variable.
 2016-07-26 22:50:26 +02:00
Danny Milosavljevic 90c2ee889b
gnu: Add perl-db-file. 
* gnu/packages/databases.scm (perl-db_file): New variable.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-07-26 22:43:48 +02:00
Alex Griffin 88a8ce87a4
gnu: icecat: Install icons. 
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add
'install-icons' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-26 14:53:16 +02:00
Tobias Geerinckx-Rice 2b76f13507
gnu: Add haveged. 
* gnu/packages/linux.scm (haveged): New variable.
 2016-07-26 11:20:52 +02:00
Tobias Geerinckx-Rice af7aaaebab
gnu: Add perceptualdiff. 
* gnu/packages/image.scm (perceptualdiff): New variable.
 2016-07-26 11:20:27 +02:00
Mark H Weaver ca80985c6c
gnu: linux-libre@4.1: Update to 4.1.28. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.28.
 2016-07-26 01:36:12 -04:00
Mark H Weaver de348a0bb7
gnu: linux-libre: Update to 4.7. 
* gnu/packages/linux.scm (linux-libre): Update to 4.7.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: New files.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.
 2016-07-26 00:46:40 -04:00
Ludovic Courtès 5dbfbef729
gnu: lpsolve: Fix compilation issue. 
Reported by Andreas Enge <andreas@enge.fr>
at <https://lists.gnu.org/archive/html/guix-devel/2016-07/msg01018.html>.

* gnu/packages/maths.scm (lpsolve)[source]: Augment 'snippet'.
 2016-07-26 00:43:52 +02:00
Ludovic Courtès 6689d09457
gnu: lpsolve: Fail as early as possible. 
* gnu/packages/maths.scm (lpsolve)[arguments]: In 'build' phase, check
the return value of 'system*' and honor it.
 2016-07-26 00:43:52 +02:00
Andreas Enge 0e5f606159
gnu: calibre: Build with non-modular Qt. 
* gnu/packages/ebook.scm (calibre)[native-inputs]: Replace QTBASE by QT.
[inputs]: Replace QTBASE by QT and PYTHON2-PYQT by PYTHON2-PYQT-5.5.

This essentially reverts commit 76806c54ed.

Reported by Roel Janssen <roel@gnu.org>.
 2016-07-26 00:38:39 +02:00
Andreas Enge 4a8c35e143
gnu: pyqt: Add versions based on non-modular Qt 5.5. 
* gnu/packages/qt.scm (python-pyqt-5.5, python2-pyqt-5.5): New variables.
 2016-07-26 00:38:20 +02:00
Andreas Enge e83a13faa2
gnu: fastcap: Build with ghostscript-gs. 
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace GHOSTSCRIPT
by GHOST_SCRIPT-GS.

This is a follow-up to commit d8eb912132.
 2016-07-25 23:59:47 +02:00
Andreas Enge 95af24a2f1
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 97c8aef.
 2016-07-25 22:53:27 +02:00
Andreas Enge 97c8aef15d
system: Add mapped devices for RAID. 
* gnu/system/mapped-devices.scm (raid-device-mapping, open-raid-device,
close-raid-device): New variables.
* doc/guix.texi (Mapped Devices): Add documentation for RAID devices,
reorganize documentation for LUKS devices.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-25 22:22:21 +02:00
Andreas Enge 14656f4495
Merge remote-tracking branch 'origin/master' into core-updates 2016-07-25 21:58:36 +02:00
Alex Kost 090bdb9e91
gnu: emacs-solarized-theme: Remove unneeded dependencies. 
* gnu/packages/emacs.scm (emacs-solarized-theme)[propagated-inputs]:
Remove 'emacs-f' and 'emacs-s'.
 2016-07-25 17:18:53 +03:00
Alex Kost c48899eba2
gnu: emacs: Install site-start.el in non-versioned directory. 
Reported by Ricardo Wurmus on #guix.

* gnu/packages/emacs.scm (emacs)[arguments]: Put "site-start.el" in
"/share/emacs/site-lisp" instead of "/share/emacs/<version>/site-lisp"
to let inherited package with another version find it.
 2016-07-25 17:18:53 +03:00
Alex Kost 07f7cc03ce
gnu: Add guile-daemon. 
* gnu/packages/guile.scm (guile-daemon): New variable.
 2016-07-25 17:18:53 +03:00
Alex Kost bd9af61035
gnu: Add guile-xosd. 
* gnu/packages/guile.scm (guile-xosd): New variable.
 2016-07-25 17:18:53 +03:00
Alex Kost 6cfd1a687a
gnu: Add xdpyprobe. 
* gnu/packages/xdisorg.scm (xdpyprobe): New variable.
 2016-07-25 17:18:53 +03:00
Alex Kost 84b5d9075c
gnu: mkfontdir: Do not propagate 'mkfontscale'. 
* gnu/packages/xorg.scm (mkfontdir)[propagated-inputs]: Move
'mkfontscale' to ...
[inputs]: ... here.
[arguments]: Add 'wrap-mkfontdir' phase.
 2016-07-25 17:18:52 +03:00
Alex Kost e48e31bcc8
gnu: Add xfd. 
* gnu/packages/xorg.scm (xfd): New variable.
 2016-07-25 17:18:52 +03:00
Alex Kost f225ae7544
gnu: Add xfontsel. 
* gnu/packages/xorg.scm (xfontsel): New variable.
 2016-07-25 17:18:52 +03:00
Andy Patterson 1925a87926
gnu: sbcl: Update to 1.3.7. 
* gnu/packages/lisp.scm (sbcl): Update to 1.3.7.
[arguments]: During the patch-unix-tool-paths phase, avoid running
substitute* on a utf-16-be encoded file.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-07-25 19:50:13 +08:00
Ludovic Courtès d8eb912132
gnu: Use 'ghostscript-gs' in packages that need the 'gs' command. 
Fixes a regression introduced in
eb354bdacb.

Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/gv.scm (gv)[propagated-inputs]: Change from GHOSTSCRIPT/X
to GHOSTSCRIPT-GS/X.
* gnu/packages/music.scm (lilypond): Use GHOSTSCRIPT-GS instead of
GHOSTSCRIPT.
* gnu/packages/ocaml.scm (unison): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/scheme.scm (chez-scheme): Likewise.
 2016-07-25 11:37:43 +02:00
Ludovic Courtès 71eba3ebc1
gnu: Add 'ghostscript-gs' and 'ghostscript-gs-with-x'. 
* gnu/packages/ghostscript.scm (ghostscript-wrapper): New procedure.
(ghostscript-gs, ghostscript-gs/x): New variables.
 2016-07-25 11:36:51 +02:00
Andy Patterson 54a43ff406
gnu: ecl: Wrap with PATH, CPATH, LIBRARY_PATH, and LD_LIBRARY_PATH. 
* gnu/packages/lisp.scm (ecl)[arguments]: Add 'wrap' phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-25 10:48:49 +02:00
Andy Patterson 60474cd114
gnu: ecl: Enable tests. 
* gnu/packages/lisp.scm (ecl): Enable tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-25 10:48:49 +02:00
Andy Patterson e0524511ec
gnu: ecl: Update to 16.1.2. 
* gnu/packages/lisp.scm (ecl): Update to 16.1.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-25 10:48:49 +02:00
Efraim Flashner 45477c6a7d
gnu: gnupg@2.1: Use 'modify-phases'. 
* gnu/packages/gnupg.scm (gnupg@2.1)[arguments]: Use 'modify-phases'
syntax.
 2016-07-25 00:18:15 +03:00
Efraim Flashner 35d28c6013
gnu: hdup: Update source url. 
* gnu/packages/backup.scm (hdup)[source]: Update url.
 2016-07-25 00:15:30 +03:00
Leo Famulari 163708a664
gnu: gnupg-2.1: Install executable as 'gpg'. 
* gnu/packages/gnupg.scm (gnupg-2.1)[arguments]: Add '--enable-gpg2-is-gpg'
to #:configure-flags.
 2016-07-24 17:09:40 -04:00
Ludovic Courtès bc85b127df
gnu: gnupg@2.0: Add the 'gpg' and 'gpgv' commands. 
* gnu/packages/gnupg.scm (gnupg-2.0)[arguments]: Add
'rename-v2-commands' phase.
 2016-07-24 22:18:45 +02:00
Efraim Flashner 80c47cf8e4
gnu: gnupg@2.0: Fix typo. 
* gnu/packages/gnupg.scm (gnupg@2.0)[arguments]: Fix typo that prevented
gnupg from building.

This is a follow up to 6b547d2295.
 2016-07-24 22:02:46 +03:00
Efraim Flashner 04c828c4fb
gnu: exiv2: Update source url. 
* gnu/packages/geeqie.scm (exiv2)[source]: Update url.
 2016-07-24 21:17:04 +03:00
Ludovic Courtès 6b547d2295
doc: gnupg@2.0: Use 'modify-phases'. 
* gnu/packages/gnupg.scm (gnupg-2.0)[arguments]: Use 'modify-phases'.
 2016-07-24 19:54:15 +02:00
Andreas Enge 1abdc167d3
Merge branch 'master' into core-updates 2016-07-24 18:42:56 +02:00
Andreas Enge a308c2339a
gnu: icecat: Disable parallel build. 
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Disable parallel build.
 2016-07-24 18:40:46 +02:00
Andreas Enge 238e5642d4
gnu: icecat: Update to 38.8.0-gnu2. 
* gnu/packages/gnuzilla.scm (icecat): Update to 38.8.0-gnu2.
 2016-07-24 17:28:36 +02:00
Efraim Flashner d841a292b2
gnu: openssh: Fix CVE-2016-6210. 
* gnu/packages/ssh.scm (openssh)[source]: Add patches
openssh-CVE-2016-6210-1.patch, openssh-CVE-2016-6210-2.patch,
openssh-CVE-2016-6210-3.patch.
* gnu/packages/patches/openssh-CVE-2016-6210-1.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-2.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register them.
 2016-07-24 16:18:41 +03:00
Efraim Flashner df2c7563ff
gnu: pspp: Update to 0.10.2. 
* gnu/packages/statistics.scm (pspp): Update to 0.10.2.
 2016-07-24 15:43:35 +03:00
Efraim Flashner fe84bc9aba
gnu: python-iso8601: Update to 0.1.11. 
* gnu/packages/python.scm (python-iso8601): Update to 0.1.11.
 2016-07-24 15:43:34 +03:00
Efraim Flashner 2af56bfa1e
gnu: iniparser: Use 'modify-phases'. 
* gnu/packages/samba.scm (iniparser)[arguments]: Use 'modify-phases'
syntax.
 2016-07-24 15:43:34 +03:00
Efraim Flashner def8f501e6
gnu: iniparser: Update to 4.0. 
* gnu/packages/samba.scm (iniparser): Update to 4.0.
[source]: Download from Github.
[arguments]: Define 'gcc' in Makefiles.
 2016-07-24 15:43:33 +03:00
Efraim Flashner f0e8d85e17
gnu: python-waf: Update to 1.9.1. 
* gnu/packages/python.scm (python-waf): Update to 1.9.1.
 2016-07-24 15:43:33 +03:00
Efraim Flashner f0b8d83a77
gnu: mpv: Use packaged waf. 
* gnu/packages/video.scm (mpv)[inputs]: Remove externally downloaded waf
package and use packaged python-waf.
 2016-07-24 15:43:32 +03:00
Andreas Enge 8ebdf9afd6
gnu: wxwidgets: Update source URL. 
* gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2): Update source URL.
 2016-07-24 10:36:54 +02:00
Leo Famulari d5f335eedb
gnu: git: Update to 2.9.2. 
* gnu/packages/version-control.scm (git): Update to 2.9.2.
(git-manpages)[source]: Update hash.
 2016-07-24 03:49:10 -04:00
Ricardo Wurmus 6af691723e
gnu: icedtea-6: Narrow file to certificate block. 
* gnu/packages/java.scm (icedtea-6)[arguments]: Extract certificate
  blocks from pem files before importing.
 2016-07-24 09:41:57 +02:00
ng0 578aeea6cd
gnu: perl-io-socket-ssl: Add IDN support. 
* gnu/packages/web.scm (perl-io-socket-ssl)[propagated-inputs]: Add perl-uri
for IDN support.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-07-24 09:36:42 +03:00
ng0 73020459b3
gnu: perl-io-socket-ssl: Update to 2.033. 
* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.033.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-07-24 09:36:42 +03:00
Efraim Flashner 763a17ba62
gnu: parallel: Update to 20160722. 
* gnu/packages/parallel.scm (parallel): Update to 20160722.
 2016-07-24 09:36:42 +03:00
Efraim Flashner fad51a1837
gnu: hplip: Update to 3.16.7. 
* gnu/packages/cups.scm (hplip): Update to 3.16.7.
 2016-07-24 09:35:58 +03:00
Efraim Flashner 7531b1fc4d
gnu: ghc-memory: Update to 0.13. 
* gnu/packages/haskell.scm (ghc-memory): Update to 0.13.
 2016-07-24 09:35:58 +03:00
Alex Griffin 92c2f6055d
gnu: Add trash-cli. 
* gnu/packages/shellutils.scm (trash-cli): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-23 20:34:31 -04:00
Andreas Enge 2a69d4df7d
gnu: youtube-dl: Update to 2016.07.22. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.07.22.
 2016-07-24 00:11:15 +02:00
Efraim Flashner a4ea25d347
gnu: offlineimap: Update to 7.0.0. 
* gnu/packages/mail.scm (offlineimap): Update to 7.0.0.
[inputs]: Add python2-six.
[native-inputs]: Remove python2.
 2016-07-24 00:30:02 +03:00
Andreas Enge a000f3c4a8
gnu: cook: Update source URL. 
* gnu/packages/cook.scm (cook)[source]: Update URL.
 2016-07-23 22:19:11 +02:00
Andreas Enge fe7fa35320
gnu: bitcoin-core: Build with bdb-5.3. 
* gnu/packages/finance.scm (bitcoin-core)[inputs]: Replace bdb by bdb-5.3.
 2016-07-23 20:19:58 +02:00
Tobias Geerinckx-Rice 6a3987b1ae
gnu: fish: Update to 2.3.1. 
* gnu/packages/fish.scm (fish): Update to 2.3.1.
[home-page, source]: Use 'https' in the URL.
 2016-07-23 20:18:14 +02:00
Tobias Geerinckx-Rice 389eb3fab7
gnu: Add lrzip. 
* gnu/packages/compression.scm (lrzip): New variable.
 2016-07-23 20:18:14 +02:00
ng0 f75f261f55
gnu: libepoxy: Update to 1.3.1. 
* gnu/packages/gl.scm (libepoxy): Update to 1.3.1.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-07-23 12:56:08 +02:00
Ben Woodcroft e03a515304
gnu: fasttree: Update to 2.1.9. 
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.9.
 2016-07-23 15:15:12 +10:00
Leo Famulari d227260d2f
Merge branch 'master' into core-updates 
Resolved conflicts:
* gnu/packages/scheme.scm: Conflict in import of (guix licenses). On master,
"#:hide (openssl)" was used. On core-updates, "#:select (some licenses)" was
used. The latter won the conflict.
* gnu/packages/version-control.scm (git)[arguments]: Whitespace conflict
in 'install-shell-completion.
 2016-07-22 18:58:31 -04:00
Leo Famulari d778fa5ff6
gnu: mozjs: Disable parallel build. 
* gnu/packages/gnuzilla.scm (mozjs)[arguments]: Add
'#:parallel-build? #f'.
 2016-07-22 17:44:31 -04:00
Alex Griffin 26ad4adb55
gnu: wesnoth: Update to 1.12.6. 
* gnu/packages/games.scm (wesnoth): Update to 1.12.6.
 2016-07-22 16:12:16 -04:00
Leo Famulari eddf9ae95e
gnu: opus: Update to 1.1.3. 
* gnu/packages/xiph.scm (opus): Update to 1.1.3.
 2016-07-22 14:02:13 -04:00
Leo Famulari 0f971a0475
gnu: Update URLs for sourceforge.net. 
* gnu/packages/audio.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/lxde.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
 2016-07-22 11:47:12 -04:00
Efraim Flashner 8ef843c711
gnu: aegis: Use 'modify-phases'. 
* gnu/packages/version-control.scm (aegis)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 2ce516d359
gnu: git: Use 'modify-phases'. 
* gnu/packages/version-control.scm (git)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner bf3c57ff2d
gnu: cssc: Use 'modify-phases'. 
* gnu/packages/version-control.scm (cssc)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 7c5a145414
gnu: subversion: Use 'modify-phases'. 
* gnu/packages/version-control.scm (subversion)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner ce84c924ac
gnu: subversion: Use https. 
* gnu/packages/version-control.scm (subversion)[source]: Use https.
[home-page]: Use https.
 2016-07-22 18:24:22 +03:00
Efraim Flashner aac42d7885
gnu: git-flow: Use 'modify-phases'. 
* gnu/packages/version-control.scm (git-flow)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 430e67a459
gnu: gnuplot: Update to upstream's re-release of 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the
version scheme of gnuplot to force an update.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 18d4d10f34
gnu: enlightenment: Update to 0.21.1. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.1.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 730c740e43
gnu: bazaar: Use 'modify-phases'. 
* gnu/packages/version-control.scm (bazaar)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Ricardo Wurmus f21403e2b6 gnu: icedtea-6: Generate keystore. 
* gnu/packages/java.scm (icedtea-6)[arguments]: Add phase
"install-keystore".
[native-inputs]: Add nss-certs.
 2016-07-22 17:10:25 +02:00
Ricardo Wurmus 9bc84dfea9 gnu: icedtea-6: Use modify-phases syntax. 
* gnu/packages/java.scm (icedtea-6)[arguments]: Use modify-phases
  syntax.
 2016-07-22 17:10:11 +02:00
Ricardo Wurmus 745ad37a78 gnu: nss-certs: Stop inheriting from nss package. 
* gnu/packages/certs.scm (nss-certs): Stop inheriting from nss package.
 2016-07-22 17:10:11 +02:00
Danny Milosavljevic c2f0dc6ed1
gnu: Add ptpython and ptpython2. 
* gnu/packages/python.scm (ptpython, ptpython-2): New variables.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-22 15:06:05 +02:00
宋文武 782170c4f5
gnu: racket: Add more inputs. 
* gnu/packages/scheme.scm (racket)[inputs]: Add glu, gmp, libpng, libx11,
mesa, mpfr, openssl and unixodbc.  Replace libjpeg-8 with libjpeg and
gtk+-2 with gtk+.
 2016-07-22 19:09:20 +08:00
宋文武 e8c6811bf1
gnu: racket: Patch dynamically loaded libraries with absolute paths. 
* gnu/packages/scheme.scm (racket)[arguments]: Patch 'ffi-lib' calls to
absolute paths in 'pre-configure' phase.  Remove 'wrap-programs' phase.
 2016-07-22 19:09:11 +08:00
Daniel Pimentel 8d63dddac1
gnu: Add python-protobuf. 
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): New variables.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-07-22 02:22:49 -04:00
Leo Famulari d7cff656df
gnu: muparser: Update source URL. 
* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location.
Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
 2016-07-21 18:25:20 -04:00
Leo Famulari de67e92288
gnu: Update URLs for sourceforge.net. 
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
 2016-07-21 18:09:40 -04:00
Kei Kebreau a205d3f991
gnu: Add hexedit. 
* gnu/packages/hexedit: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-07-21 14:06:05 -04:00
Tomáš Čech 24e964314e
services: Export *-service-type and *-configuration. 
This allows users to use 'modify-services' and similar constructs for
all these service types.

* gnu/services/avahi.scm: export avahi-configuration.
* gnu/services/base.scm: export gpm-configuration and
rngd-configuration.
* gnu/services/databases.scm: export *-service-type and *-configuration.
* gnu/services/dbus.scm: export dbus-configuration.
* gnu/services/dict.scm: export dicod-service-type.
* gnu/services/lirc.scm: export lirc-configuration and
lirc-service-type.
* gnu/services/mail.scm: export dovecot-service-type.
* gnu/services/web.scm: export nginx-configuration and
nginx-service-type.
* gnu/services/xorg.scm: export screen-locker and screen-locker?.
* gnu/services/ssh.scm: export lsh-configuration and lsh-service-type.
* gnu/services/desktop.scm: export *-service, *-service-type
and *-configuration.
* gnu/services/networking.scm: export *-configuration
and *-service-type.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-21 18:53:27 +02:00
Efraim Flashner 427dda54f2
gnu: tesseract-ocr: Update to 3.04.01. 
* gnu/packages/ocr.scm (tesseract-ocr): Update to 3.04.01.
[source]: Download from Github, add 'file-name' field, remove snippet.
[native-inputs]: Remove autoconf, automake, libtool.
[propagated-inputs]: Move leptonica ...
[inputs]: ... to here.
[arguments]: Remove 'autogen phase.
[home-page]: Move program's home-page to Github.
 2016-07-21 17:18:42 +03:00
Efraim Flashner a9c64810cd
gnu: gnuplot: Update to 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
 2016-07-21 13:56:51 +03:00
Efraim Flashner 873966e3e9
gnu: dovecot: Update to 2.2.25. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.25.
 2016-07-21 13:56:13 +03:00
Efraim Flashner 132e14b4cc
gnu: texlive: Use https. 
* gnu/packages/tex.scm (texlive-bin, texlive-texmf, texlive)[license]:
Use 'https' in the url.
[home-page]: Use 'https' in the url.
 2016-07-21 12:56:17 +03:00
Efraim Flashner 29a56d8eaf
gnu: texlive: Update in-place source updates. 
* gnu/packages/tex.scm (texlive-texmf-source, texlive-bin)[source]:
Update to 20160523b.
 2016-07-21 12:46:12 +03:00
Leo Famulari d23d1ddf6e
gnu: msmtp: Update to 1.6.5. 
* gnu/packages/mail.scm (msmtp): Update to 1.6.5.
[source]: Update source URL.
 2016-07-21 01:43:01 -04:00
Eric Bavier 2908087013
gnu: superlu-dist: Remove non-free source. 
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
 2016-07-20 21:16:25 -05:00
Eric Bavier 8787c555d9
gnu: slepc: Update to 3.7.1. 
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
 2016-07-20 21:16:25 -05:00
Eric Bavier fafd623e49
gnu: petsc: Update to 3.7.2. 
* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
 2016-07-20 21:16:24 -05:00
Eric Bavier b730b43770
gnu: petsc: Make header generation reproducible. 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from
  petscmachineinfo.h header.
 2016-07-20 21:16:24 -05:00
Eric Bavier 64dcc28963
gnu: petsc: Use modify-phases. 
* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
 2016-07-20 21:16:24 -05:00
Eric Bavier 9474a4b3ec
gnu: openmpi: Make binaries reproducible. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove timestamps from
source files.  Delete installed configure logs.
 2016-07-20 21:16:24 -05:00
Eric Bavier 6876590fd4
gnu: openmpi: Update to 1.10.3. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.3.
[source]: Use https.
 2016-07-20 21:15:37 -05:00
Eric Bavier 995a09e055
gnu: superlu: Update to 5.2.1. 
* gnu/packages/maths.scm (superlu): Update to 5.2.1.
[source]: Remove non-free MC64 code.
[inputs]: Use openblas instead of lapack's BLAS.
[build-system]: Use cmake-build-system.
[arguments]: Remove custom phases and replace with CMake flags.
[license]: List additional licenses for some source and example files.
 2016-07-20 18:31:16 -05:00
Eric Bavier d721c83a63
gnu: Add libhilbert. 
* gnu/packages/maths.scm (libhilbert): New variable.
 2016-07-20 18:31:16 -05:00
Ricardo Wurmus cdf8f39195
gnu: Add allegro-5.0. 
* gnu/packages/game-development.scm (allegro-5.0): New variable.
 2016-07-20 22:19:34 +02:00
Ricardo Wurmus 19d311b4f2
gnu: Add allegro. 
* gnu/packages/game-development.scm (allegro): New variable.
 2016-07-20 22:19:34 +02:00
Ludovic Courtès 7575655212
Merge branch 'master' into core-updates 2016-07-20 11:42:17 +02:00
Efraim Flashner 5f01078129
gnu: julia: Build with zlib. 
* gnu/packages/julia.scm (julia)[inputs]: Add zlib.
 2016-07-20 11:37:01 +03:00
Efraim Flashner c23c628ea7
Revert "gnu: julia: Build with zlib." 
This reverts commit 95bf72eeb0.
 2016-07-20 11:37:01 +03:00
Efraim Flashner 95bf72eeb0
gnu: julia: Build with zlib. 
* gnu/packages/julia.scm (julia)[inputs]: Add zlib.
 2016-07-20 09:11:16 +03:00
Leo Famulari 5d4c90ae02
gnu: gnutls: Update to 3.5.2. 
* gnu/packages/tls.scm (gnutls): Update to 3.5.2.
[native-inputs]: Add net-tools.
 2016-07-20 00:01:39 -04:00
Efraim Flashner 885fa1eec5
gnu: aria2: Update to 1.25.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.25.0.
 2016-07-20 06:49:44 +03:00
Ricardo Wurmus 909147e43f
services: Add pam-limits-service. 
* gnu/system/pam.scm (<pam-limits-entry>): New record type.
(pam-limits-entry, pam-limits-entry->string): New procedures.
* gnu/services/base.scm (pam-limits-service-type): New variable.
(pam-limits-service): New procedure.
* doc/guix.texi (Base Services): Document it.
 2016-07-19 23:50:03 +02:00
Ludovic Courtès 8e9ba611cb
gnu: atlas: Use @example in description. 
* gnu/packages/maths.scm (atlas)[description]: Use "@example".
 2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice d97c429a34
gnu: atlas: Use cpupower in description. 
* gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector'
with its replacement 'cpupower --governor'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice 58d6a1f227
gnu: Add cpupower. 
* gnu/packages/linux.scm (cpupower): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice 592ccdd388
gnu: Add ssdeep. 
* gnu/packages/datastructures.scm (ssdeep): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
David Craven 7fe3f8cf6e
gnu: mesa-utils: Update to 8.3.0. 
* gnu/packages/gl.scm (mesa-utils): Update to 8.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
David Craven 3a92a5b36d
gnu: Order module imports in (gnu packages gl) alphabetically. 
* gnu/packages/gl.scm: Order module imports alphabetically.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
David Craven 584f2e1bc1
gnu: gl: Change 'l:' prefix to 'license:'. 
* gnu/packages/gl.scm: Change #:prefix l: to #:prefix license:.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
Efraim Flashner aab76e80d2
gnu: python-pyquery: Update to 1.2.13. 
* gnu/packages/python.scm (python-pyquery): Update to 1.2.13.
 2016-07-19 21:07:37 +03:00
Efraim Flashner d5ccd9abf6
gnu: python-cssselect: Update to 0.9.2. 
* gnu/packages/python.scm (python-cssselect): Update to 0.9.2.
[source]: Use 'pypi-uri' format.
 2016-07-19 21:03:31 +03:00
Efraim Flashner 58d1d816ba
gnu: python2-cssutils: Update to 1.0.1. 
* gnu/packages/python.scm (python2-cssutils): Update to 1.0.1.
[source]: Use 'pypi-uri' format.
 2016-07-19 21:00:52 +03:00
Efraim Flashner 31e8a074c7
gnu: calibre: Update to 2.62.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.62.0.
 2016-07-19 20:47:25 +03:00
Efraim Flashner d58a32037e
gnu: python-lxml: Update to 3.6.0. 
* gnu/packages/python.scm (python-lxml): Update to 3.6.0.
 2016-07-19 20:11:32 +03:00
ng0 72fb1b24d9
gnu: Use HTTPS home-page URLs for PGP-related packages. 
* gnu/packages/gnupg.scm (gnupg, gpgme, libassuan, libgcrypt, libgpg-error,
libksba, npth, pius, python-gnupg, signing-party)[home-page]: Use HTTPS URLs.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-18 23:48:42 -04:00
ng0 f04a7943f4
gnu: libassuan: Update to 2.4.3. 
* gnu/packages/gnupg.scm (libassuan): Update to 2.4.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-18 23:46:32 -04:00