nixo
/
guix-devel
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity
11,027 Commits 1 Branch 0 Tags 104 MiB
Commit Graph

7693 Commits

Author SHA1 Message Date
Ricardo Wurmus 1eb6bbd8c0 gnu: gnunet: Add gstreamer and plugins to inputs. 
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add "gstreamer" and
  "gst-plugins-base".
 2016-02-12 08:09:19 +01:00
Tobias Geerinckx-Rice 3a9cfba879 install: Add btrfs-progs to the image. 
* gnu/system/install.scm (installation-os)[packages]: Add BTRFS-PROGS.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-11 21:39:30 -05:00
Tobias Geerinckx-Rice fc686f9a19 gnu: Add btrfs-progs. 
* gnu/packages/linux.scm (btrfs-progs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-11 21:02:06 -05:00
Mark H Weaver e57127fbe1 Revert "gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}]" 
This reverts commit 759246ad48.
 2016-02-11 16:31:19 -05:00
Mark H Weaver 59d4cf1c58 gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes. 
* gnu/packages/patches/icecat-update-graphite2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  Add TODO
  comment about using the system graphite2 in the future.
 2016-02-11 14:59:16 -05:00
Efraim Flashner 759246ad48 gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}] 
* gnu/packages/web.scm (nginx): Update to 1.9.11.
 2016-02-11 21:36:43 +02:00
Efraim Flashner d2ca99ccbd gnu: feh: Update to 2.14.1. 
* gnu/packages/feh.scm (feh): Update to 2.14.1.
 2016-02-11 12:46:55 +02:00
Efraim Flashner 9b719875be gnu: obs: Update to 0.13.1. 
* gnu/packages/video.scm (obs): Update to 0.13.1.
 2016-02-11 11:11:44 +02:00
Efraim Flashner 50beb63b7a gnu: fribidi: Update to 0.19.7. 
* gnu/packages/fribidi.scm (fribidi): Update to 0.19.7.
 2016-02-11 11:00:36 +02:00
Efraim Flashner 992b527d52 gnu: alsa-utils: Update to 1.1.0. 
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.0.
 2016-02-11 09:26:55 +02:00
Ricardo Wurmus 138e76972a gnu: zynaddsubfx: Update to 2.5.3. 
* gnu/packages/music.scm (zynaddsubfx): Update to 2.5.3.
 2016-02-11 08:25:03 +01:00
Leo Famulari a2a06c51ab gnu: htop: Update to 2.0.0. 
* gnu/packages/admin.scm (htop): Update to 2.0.0.
 2016-02-11 00:31:10 -05:00
Al McElrath 8a75c589aa gnu: Add notmuch-addrlookup-c. 
* gnu/packages/mail.scm (notmuch-addrlookup-c): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-10 17:08:24 -05:00
Ludovic Courtès c96ba2cf5e install: Do not cache lookup failures. 
Possibly fixes <http://bugs.gnu.org/22209>.

* gnu/system/install.scm (%nscd-minimal-caches)[negative-time-to-live]:
Set to zero.
 2016-02-10 21:47:31 +01:00
Leo Famulari 8823ed4e12 gnu: Fix syntax error in postgresql-service. 
Fixes <http://bugs.gnu.org/22618>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/services/databases.scm (%default-postgres-config): Add missing
quote in default configuration.
 2016-02-10 15:34:11 -05:00
Mark H Weaver 16114c3494 gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}. 
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
  gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3.
  [source]: Update URI to download conventional .tar.gz file.  Add patches.
  [native-inputs]: Remove old patches-as-inputs.
  [arguments]: Remove hacks needed to cope with the older unconventional
  tarball that contained an inner source tarball and signature: Remove
  #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
 2016-02-10 10:41:11 -05:00
Mark H Weaver 42395bf514 gnu: nettle: Update to 3.2 [fixes CVE-2015-{8803,8804,8805}]. 
* gnu/packages/nettle.scm (nettle): Update to 3.2.
 2016-02-10 10:41:11 -05:00
Ludovic Courtès 4ecbf6d282 gnu: haunt: Wrap 'haunt' command so that it finds its modules. 
* gnu/packages/guile.scm (haunt)[arguments]: New field.
 2016-02-10 15:15:17 +01:00
Ludovic Courtès f5582b2c1d system: Selected locale is automatically built. 
Fixes <http://bugs.gnu.org/22572>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/system/locale.scm (%not-dot): New variable.
(denormalize-codeset, locale-name->definition): New procedures.
* gnu/system.scm (locale-name->definition*): New procedure.
(operating-system-locale-directory): Instead of raising an error, add
the missing locale.
* doc/guix.texi (Locales): Adjust accordingly.
 2016-02-10 15:15:17 +01:00
Alex Kost 32e1611206 gnu: emacs-debbugs: Update to 0.9. 
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.9.
[propagated-inputs]: Add 'emacs-async'.
 2016-02-10 01:34:17 +03:00
Alex Kost b654de6da1 gnu: Add emacs-async. 
* gnu/packages/emacs.scm (emacs-async): New variable.
 2016-02-10 01:34:17 +03:00
Alex Kost 3db5ed11da gnu: magit: Update to 2.5.0. 
* gnu/packages/emacs.scm (magit): Update to 2.5.0.
[propagated-inputs]: Add 'emacs-with-editor'.
[arguments]: Make with WITH_EDITOR_DIR.
 2016-02-10 01:34:17 +03:00
Alex Kost 2b0e43003c gnu: Add emacs-with-editor. 
* gnu/packages/emacs.scm (emacs-with-editor): New variable.
 2016-02-10 01:34:17 +03:00
Pjotr Prins f1957fc145 gnu: Add munge. 
* gnu/packages/admin.scm (munge): New variable.
 2016-02-09 20:43:32 +01:00
Leo Famulari 9bee9d87dc gnu: acme: Disable egg compression. 
* gnu/packages/python.scm (acme)[arguments]: Add
'disable-egg-compression' phase.
 2016-02-08 23:45:06 -05:00
Leo Famulari 0c7320dc89 gnu: letsencrypt and acme: Update to 0.3.0. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.3.0.
(acme): Update to 0.3.0.
 2016-02-08 23:04:07 -05:00
David Thompson fe65ef54c5 youtube-dl: Update to 2016.02.05.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.05.1.
 2016-02-08 21:47:51 -05:00
Ludovic Courtès 939c5c31d6 system: Add Texinfo to '%base-packages'. 
Fixes <http://bugs.gnu.org/22598>.
Reported by myglc2 <myglc2@gmail.com>.

* gnu/system.scm (%base-packages): Add TEXINFO.
 2016-02-08 23:46:46 +01:00
Ludovic Courtès 1f1ff6a0e7 linux-container: Accept file systems with a UUID 'source'. 
* gnu/system/linux-container.scm (containerized-operating-system)[user-file-systems]:
Check whether SOURCE is a string before calling 'string-prefix?'.
 2016-02-08 23:46:46 +01:00
Ludovic Courtès 6eb439070a file-systems: Spawn a Bournish REPL upon fsck failure. 
Fixes <http://bugs.gnu.org/22588>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/build/file-systems.scm (check-file-system): Pass
%BOURNISH-LANGUAGE as the argument to 'start-repl'.
* gnu/services.scm (activation-script): Add (guix build bournish).
* gnu/services/base.scm (file-system-shepherd-service)[imported-modules]:
Likewise.
* gnu/system/linux-container.scm (container-script): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
 2016-02-08 23:46:46 +01:00
Ludovic Courtès f2e4805b7e Add (guix build bournish) and use it in the initrd. 
* guix/build/bournish.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/system/linux-initrd.scm (base-initrd): Add (guix build bournish)
and use it.
 2016-02-08 23:46:46 +01:00
Nils Gillmann 423eef362b gnu: add lispf4 
* gnu/packages/lisp.scm (lispf4): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-08 15:09:34 -05:00
Mark H Weaver 7fb51d9742 gnu: dbus: Use https source URL. 
* gnu/packages/glib.scm (dbus)[source]: Use https URL.
 2016-02-08 08:59:00 -05:00
Rene Saavedra 8b8775454b gnu: Add nautilus. 
* gnu/packages/gnome.scm (nautilus): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
 2016-02-08 13:48:16 +08:00
Leo Famulari 16095d2729 gnu: python-pillow: Update to 3.1.1 [fixes CVE-2016-{0740, 0775}]. 
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.1.1.
 2016-02-08 00:25:40 -05:00
Christopher Allan Webber 3d4f9d5cde gnu: Add assword. 
* gnu/packages/password-utils.scm (assword): New variable.
 2016-02-07 14:57:52 -08:00
Christopher Allan Webber 0bdc1671e4 gnu: Add python2-xdo. 
* gnu/packages/python.scm (python2-xdo): New variable.
 2016-02-07 14:57:52 -08:00
Ludovic Courtès 57b7b8cd60 gnu: python-matplotlib: Define 'python2-variant'. 
* gnu/packages/python.scm (python2-numpy): Take the result of
'package-with-python2' directly.
(python2-scipy): Likewise.
(python-matplotlib)[properties]: New field.
(python2-matplotlib): Call 'strip-python2-variant'.
 2016-02-07 23:46:01 +01:00
Ludovic Courtès 48b311b1b3 gnu: python-cython: Define 'python2-variant'. 
* gnu/packages/python.scm (python-cython)[properties]: New field.
(python2-cython): Use 'strip-python2-variant'.
 2016-02-07 23:46:01 +01:00
Ludovic Courtès 7ec42f1d8a gnu: python-pycairo: Define 'python2-variant'. 
* gnu/packages/gtk.scm (python-pycairo)[properties]: New field.
(python2-pycairo): Use 'strip-python2-variant'.
 2016-02-07 23:46:01 +01:00
Ludovic Courtès 00f2bf3433 gnu: python-pygobject: Define 'python2-variant'. 
* gnu/packages/glib.scm (python-pygobject)[properties]: New field.
(python2-pygobject): Use 'strip-python2-variant'.
 2016-02-07 23:46:01 +01:00
Ludovic Courtès 5540929500 gnu: upower: Install man pages. 
* gnu/packages/gnome.scm (upower)[native-inputs]: Add LIBXML2, LIBXSLT,
and DOCBOOK-XSL.
 2016-02-07 23:46:01 +01:00
Efraim Flashner 17d2e86d49 gnu: keepassx: Update to 2.0.2. 
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.2.
 2016-02-07 21:37:00 +02:00
Fabian Harfert 6366cef38d gnu: Add libcanberra-gtk2. 
* gnu/packages/libcanberra.scm (libcanberra/gtk+-2): New variable.
 2016-02-07 16:49:51 +01:00
Efraim Flashner fe476868df gnu: python2-pysqlite: Update to 2.8.1. 
* gnu/packages/python.scm (python2-pysqlite): Update to 2.8.1.
[source]: Change to `pypi uri` syntax.
[home-page]: Update to new homepage.
 2016-02-07 15:59:54 +02:00
Efraim Flashner f2d06d4697 gnu: python2-backport-ssl-match-hostname: Update to 3.5.0.1. 
* gnu/packages/python.scm (python2-backport-ssl-match-hostname):
Update to 3.5.0.1.
[arguments]: Skip tests.
[synopsis]: Update for python version 3.5.x.
 2016-02-07 15:24:43 +02:00
Efraim Flashner ce6c13ee8c gnu: python-cryptography: Update to 1.2.2. 
* gnu/packages/python.scm (python-cryptography): Update to 1.2.2.
[source]: Change to `pypi uri` syntax.
[native-inputs]: Add python-pyasn1, python-pyasn1-modules,
python-hypothesis.
(python2-cryptography)[propagated-inputs]: Add
python2-backport-ssl-match-hostname
 2016-02-07 14:26:57 +02:00
Efraim Flashner b39b33e8c8 gnu: python-cryptography-vectors: Update to 1.2.2. 
* gnu/packages/python.scm (python-cryptography-vectors): Update to 1.2.2.
 2016-02-07 13:57:44 +02:00
Efraim Flashner 6fb54e3bd4 gnu: python-pip: Update to 8.0.2. 
* gnu/packages/python.scm (python-pip): Update to 8.0.2.
[source]: Change to `pypi uri` syntax.
 2016-02-07 13:38:16 +02:00
Efraim Flashner 5b669ba1e3 gnu: python-gnupg: Update to 0.3.8. 
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.3.8.
[source]: Change to 'pypi uri` syntax.
 2016-02-07 12:58:54 +02:00
Alex Kost b3fee145df system: Fix EMACSLOADPATH. 
After commit 13fe4891fa, Emacs package
includes "site-start.el", and it has a priority over
"/etc/emacs/site-start.el" on GuixSD because "/etc/emacs" is added to
the end of 'load-path'.

* gnu/system.scm (operating-system-environment-variables): Change
  EMACSLOADPATH to prepend "/etc/emacs" to 'load-path' instead of
  appending.
 2016-02-07 11:24:35 +03:00
宋文武 6588c2834a gnu: curl: Use 'https' URL. 
Reported by marusich on #guix.

* gnu/packages/curl.scm (curl)[source]: Use 'https' URL.
 2016-02-07 10:41:40 +08:00
Christopher Allan Webber 6f74aecdb3 gnu: xdotools: Update to 3.20150503.1 
* gnu/packages/xdisorg.scm (xdotools): Upgrade to 3.20150503.1.
* gnu/packages/patches/xdotool-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 15:39:51 -08:00
Ludovic Courtès d9f0788ad2 gnu: guile-next: Update to 2.1.2. 
* gnu/packages/guile.scm (guile-next): Update to 2.1.2.  Add 'snippet'.
 2016-02-06 21:46:25 +01:00
Ludovic Courtès 8c4c2a983e gnu: Add Texinfo 6.1. 
* gnu/packages/texinfo.scm (texinfo-6.1): New variable.
* gnu/packages/emacs.scm (emacs): Add comment about 'info.info'.
 2016-02-06 21:46:25 +01:00
Christopher Allan Webber a05d1d82c0 gnu: Add python-pygpgme 
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme): New variables.
* gnu/packages/patches/pygpgme-disable-problematic-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 11:30:35 -08:00
Mark H Weaver 08cb746f08 gnu: icecat: Re-enable the Ephemeral Diffie-Hellman cipher suites. 
* gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-02-06 08:48:20 -05:00
Ludovic Courtès e7ad0d5862 services: elogind: Extend PAM to use 'pam_elogind.so'. 
Thanks to Andy Wingo <wingo@igalia.com> for explaining this at
<https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00439.html>.

* gnu/services/desktop.scm (pam-extension-procedure): New procedure.
(elogind-service-type): Extend PAM-ROOT-SERVICE-TYPE.
 2016-02-06 12:01:42 +01:00
Ludovic Courtès 12c00bca92 system: pam: 'pam-root-service-type' can be extended with transformations. 
* gnu/system/pam.scm (<pam-configuration>): New record type.
(/etc-entry): Change 'services' parameter' to 'config'.  Honor the
'transform' field of CONFIG.
(extend-configuration): New procedure.
(pam-root-service-type): Use EXTEND-CONFIGURATION as the 'extend'
field.
(pam-root-service): Add #:transform parameter.  Service value is a
<pam-configuration>.
 2016-02-06 12:01:42 +01:00
Ludovic Courtès d7bce31c36 system: pam: Export accessors. 
* gnu/system/pam.scm: Export <pam-service> and <pam-entry> accessors.
 2016-02-06 12:01:42 +01:00
Fabian Harfert b7807bb2fa gnu: Add murrine. 
* gnu/packages/gtk.scm (murrine): New variable.
 2016-02-06 13:35:29 +08:00
Fabian Harfert 9ba5198c4c gnu: Add gtk-engines. 
* gnu/packages/gtk.scm (gtk-engines): New variable.
 2016-02-06 13:32:59 +08:00
Andreas Enge eb2afd000c gnu: r: Drop input lapack. 
* gnu/packages/statistics.scm (r)[inputs]: Drop lapack, which is
  recommended by the manual.
  [arguments]: Adapt configure flags.
 2016-02-05 23:20:43 +01:00
Ludovic Courtès 05c5b16585 services: elogind: Add elogind to the global profile. 
* gnu/services/desktop.scm (elogind-service-type): Extend
PROFILE-SERVICE-TYPE.
 2016-02-05 22:10:42 +01:00
Ludovic Courtès edc891fa76 services: upower: Add upower to the global profile. 
* gnu/services/desktop.scm (upower-service-type): Extend
PROFILE-SERVICE-TYPE.
 2016-02-05 22:10:42 +01:00
Ludovic Courtès 42c97811c9 gnu: vpnc: Make sure 'vpnc-script' finds the commands it needs. 
* gnu/packages/vpn.scm (vpnc)[inputs]: Add NET-TOOLS and IPROUTE.
[arguments]: Use 'modify-phases'.  Wrap 'vpnc-script'.
 2016-02-05 22:10:42 +01:00
Mark H Weaver a7d8c466db gnu: icecat: Update to 38.6.0-gnu1. 
* gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.6.0-gnu1.
  [source]: Remove patches.
 2016-02-05 16:00:25 -05:00
Andreas Enge 95b754a17a gnu: r: Drop input openblas. 
* gnu/packages/statistics.scm (r)[inputs]: Drop openblas.
  [arguments]: Adapt configure flags. This makes the build succeed
  on armhf-linux.
 2016-02-05 20:51:39 +01:00
Efraim Flashner 22b0caa3ed gnu: glibmm: Update to 2.46.3. 
* gnu/packages/glib.scm (glibmm): Update to 2.46.3.
 2016-02-05 16:02:26 +02:00
Efraim Flashner 93e3be9abd gnu: gedit: Update to 3.18.3. 
* gnu/packages/gnome.scm (gedit): Update to 3.18.3.
 2016-02-05 16:02:26 +02:00
Efraim Flashner 7965a94a67 gnu: gtksourceview: Update to 3.18.2. 
* gnu/packages/gtk.scm (gtksourceview): Update to 3.18.2.
 2016-02-05 16:02:26 +02:00
Efraim Flashner 5b00397279 gnu: atkmm: Update to 2.24.2. 
* gnu/packages/gtk.scm (atkmm): Update to 2.24.2.
 2016-02-05 16:02:26 +02:00
Efraim Flashner f58219569c gnu: libxml++: Update to 3.0.0. 
* gnu/packages/gnome.scm (libxml++): Update to 3.0.0.
 2016-02-05 16:02:26 +02:00
Efraim Flashner 73836c7de8 gnu: ffmpeg: Update to 2.8.6. 
* gnu/packages/video.scm (ffmpeg): Update to 2.8.6.
 2016-02-05 16:02:26 +02:00
Efraim Flashner e267435787 gnu: vte: Update to 0.42.3. 
* gnu/packages/gnome.scm (vte): Update to 0.42.3.
 2016-02-05 16:02:26 +02:00
Andreas Enge 71ee51a057 gnu: libbluray: Drop unused inputs. 
* gnu/packages/video.scm (libbluray)[inputs]: Remove doxygen, perl and
  texlive. The first one is checked during the configure phase, but no
  documentation is actually built anyway.
 2016-02-05 14:42:13 +01:00
Ludovic Courtès 234ea8a71c service: shepherd: All of the config file is in 'call-with-error-handling'. 
* gnu/services/shepherd.scm (shepherd-configuration-file)[config]: Wrap
all the body in 'call-with-error-handling'.
 2016-02-05 14:01:46 +01:00
Ludovic Courtès 081bd3bd29 service: shepherd: Guard against exceptions raised by 'start'. 
Fixes <http://bugs.gnu.org/22548>.
Reported by Albin <albin@fripost.org>, Mark H Weaver, and Alex Kost.

* gnu/services/shepherd.scm (shepherd-configuration-file)[config]: Guard
against 'service-error?'.
 2016-02-05 14:01:46 +01:00
Ludovic Courtès 1d6b7d5847 guix system: Simply warn if we cannot talk to the shepherd. 
Before that 'open-connection' would return #f, and thus
'current-services' would return a single #f value when its continuation
expects two.

Reported by calher on #guix.

* gnu/services/herd.scm (open-connection): Rethrow system-error
exceptions.
(with-shepherd): Expect CONNECTION to always be true; remove useless
'dynamic-wind'.
* guix/scripts/system.scm (warn-on-system-error): New macro.
(upgrade-shepherd-services): Wrap body in 'warn-on-system-error'.
 2016-02-05 14:01:46 +01:00
Ludovic Courtès 6b55ee8889 gnu: net-tools: Update URLs. 
Reported by Jookia <166291@gmail.com> and Leo Famulari <leo@famulari.name>.

* gnu/packages/linux.scm (net-tools)[home-page]: Switch to SourceForge.
[source]: Add SourceForge and ibiblio.org URLs.
 2016-02-05 14:01:46 +01:00
Tobias Geerinckx-Rice 0f860464bd gnu: Add sdparm. 
* gnu/packages/disk.scm (sdparm): New variable.
 2016-02-05 09:30:29 +01:00
Mark H Weaver b9da375999 gnu: mplayer: Update to 1.2.1. 
* gnu/packages/video.scm (mplayer): Update to 1.2.1.
 2016-02-04 22:06:01 -05:00
Leo Famulari 90bcecc568 gnu: jasper: Add fixes for several security flaws. 
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-02-04 15:09:41 -05:00
Ludovic Courtès a6312f1dd0 install: Add glibc to the global profile. 
Suggested by petter on #guix.

* gnu/system/install.scm (installation-os)[packages]: Add glibc.
 2016-02-04 12:21:34 +01:00
Leo Famulari 202e2e412a gnu: harfbuzz: Update to 1.0.6 [fixes CVE-2016-2052]. 
* gnu/packages/gtk.scm (harfbuzz): Update to 1.0.6.
 2016-02-04 00:15:21 -05:00
Mark H Weaver 5fb205c638 gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f. 
* gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch.
 2016-02-04 00:15:21 -05:00
Mark H Weaver 19f339526f gnu: openssl: Update to 1.0.2f [fixes CVE-2015-3197 and CVE-2016-0701]. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2f.
  [arguments]: Remove the 'fix-broken-symlinks' phase.
 2016-02-04 00:15:21 -05:00
Leo Famulari bdbb7c1852 gnu: curl: Update to 7.47.0 [fixes CVE-2016-0755]. 
* gnu/packages/curl.scm (curl): Update to 7.47.0.
 2016-02-04 00:15:21 -05:00
Mark H Weaver dfb9001ad8 linux-initrd: Add serpent_generic and wp512 to the default set of modules. 
Adds modules needed for encrypted root partitions using the Serpent cipher or
Whirlpool digest algorithms.

* gnu/system/linux-initrd.scm (base-initrd)[linux-modules]: Add
  "serpent_generic" and "wp512".
 2016-02-03 16:48:06 -05:00
Mark H Weaver cc023e320e linux-initrd: Add hid-generic and hid-apple to the default set of modules. 
Fixes keyboard of MacBook2,1 during early boot, e.g. for typing a password to
mount an encrypted root partition.

* gnu/system/linux-initrd.scm (base-initrd)[linux-modules]: Add "hid-generic"
  and "hid-apple".
 2016-02-03 16:43:42 -05:00
Ludovic Courtès 37dd1e6a34 services: 'file-union' makes sure each source file exists. 
Before that, specifying an invalid timezone in 'operating-system' would
lead to a dangling symlink in the 'etc' directory, which in turn would
lead to a kernel panic at boot time.

Reported by pizzaiolo on #guix.

* gnu/services.scm (file-union): Add 'stat' call for SOURCE.
 2016-02-03 22:28:28 +01:00
Ludovic Courtès 240b57f0ca guix system: 'reconfigure' loads and starts new services. 
Partly fixes <http://bugs.gnu.org/22039>.

* gnu/services/herd.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/services/shepherd.scm (shepherd-service-canonical-name): New
procedure.
(shepherd-service-file): Export.
* guix/scripts/system.scm (upgrade-shepherd-services): New procedure.
(switch-to-system): Use it.
* guix/ui.scm (info): New procedure.
* doc/guix.texi (Invoking guix system): Mention system services.
 2016-02-03 22:28:28 +01:00
Efraim Flashner 98416109d5 gnu: libdvdcss: Update to 1.4.0. 
* gnu/packages/video.scm (libdvdcss): Update to 1.4.0.
[source]: Change source url.
 2016-02-03 22:20:56 +02:00
Efraim Flashner 321a0299a7 gnu: youtube-dl: Update to 2016.02.01. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.01.
 2016-02-03 22:20:56 +02:00
Efraim Flashner dabd7c9b68 gnu: enlightenment: Update to 0.20.5. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.5.
 2016-02-03 22:20:56 +02:00
Efraim Flashner e11e76b68e gnu: emotion-generic-players: Update to 1.17.0. 
* gnu/packages/enlightenment.scm (emotion-generic-players): Update to 1.17.0.
 2016-02-03 22:20:56 +02:00
Efraim Flashner da5e7616a0 gnu: evas-generic-loaders: Update to 1.17.0. 
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update to 1.17.0.
 2016-02-03 22:20:56 +02:00
Efraim Flashner 58fc31670a gnu: elementary: Update to 1.17.0. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.17.0.
 2016-02-03 22:20:56 +02:00
Efraim Flashner 7b2f2fbf08 gnu: efl: Update to 1.17.0. 
* gnu/package/enlightenment.scm (efl): Update to 1.17.0.
 2016-02-03 22:20:56 +02:00
Andreas Enge 37d6b0978c gnu: hwloc: Build without numactl support on armhf. 
* gnu/packages/mpi.scm (hwloc)[inputs]: Drop numactl on armhf, where the
  package is not available.
 2016-02-03 21:05:51 +01:00
Andreas Enge 35dfcdd753 gnu: numactl: Remove unsupported system armhf-linux. 
* gnu/packages/linux.scm (numactl)[supported-systems]: Remove armhf.
 2016-02-03 21:03:46 +01:00
Mark H Weaver d120b1d433 gnu: Remove linux-libre-4.2.5. 
This series is no longer supported upstream.

* gnu/packages/linux.scm (linux-libre-4.2.5): Remove variable.
 2016-02-03 14:26:57 -05:00
Andreas Enge 11b953a1b1 gnu: pius: Update to 2.2.2. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.2.
 2016-02-03 15:49:07 +01:00
Andreas Enge cea18ab00b gnu: gnupg: Update to 2.1.11. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.11.
 2016-02-03 15:49:07 +01:00
Efraim Flashner 35f6c4972e gnu: ao: Update to 1.2.0. 
* gnu/packages/xiph.scm (ao): Update to 1.2.0.
 2016-02-03 13:10:37 +02:00
Ludovic Courtès 2a5f0db4c4 system: /etc/profile reads /etc/environment for the sake of lshd. 
Fixes <http://bugs.gnu.org/22175>.

* gnu/system.scm (operating-system-etc-service)[profile]: Add hack to
define variables from /etc/environment.
 2016-02-03 11:21:11 +01:00
Federico Beffa 3a6a0f6013 gnu: Add Italian Aspell dictionary. 
* gnu/packages/aspell.scm (aspell-dict-it): New variable.
 2016-02-03 10:48:36 +01:00
Federico Beffa 05f5ce0c39 gnu: sbcl: Generate and install documentation. 
* gnu/packages/lisp.scm (sbcl): Add 'doc' output.
  [arguments]: Add 'build-doc' and 'install-doc' phases.
  [native-inputs]: Add 'texlive' and 'texinfo'.
 2016-02-03 10:48:36 +01:00
Federico Beffa 1ee131df42 gnu: sbcl: Convert to the 'modify-phases' syntax. 
* gnu/packages/lisp.scm (sbcl): Do it.
 2016-02-03 10:48:36 +01:00
Federico Beffa 85960693e4 gnu: Add emacs-slime. 
* gnu/packages/emacs.scm (emacs-slime): New variable.
 2016-02-03 10:48:36 +01:00
Federico Beffa f163c290f1 gnu: mit-scheme: Generate and install documentation. 
* gnu/packages/scheme.scm (mit-scheme): Add 'doc' output.
  [arguments]: Add phases 'configure-doc, 'build-doc and 'install-doc.
  [native-inputs]: Add 'texlive'. Move 'texinfo' and 'm4' from inputs.
 2016-02-03 10:48:36 +01:00
Federico Beffa af00e63352 gnu: mit-scheme: Convert to the 'modify-phases' syntax. 
* gnu/packages/scheme.scm (mit-scheme): Do it.
 2016-02-03 10:48:36 +01:00
Federico Beffa e5045f303a gnu: Add emacs-constants. 
* gnu/packages/emacs.scm (emacs-constants): New variable.
* gnu/packages/patches/emacs-constants-lisp-like.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-03 10:48:36 +01:00
Federico Beffa 58a7dc1340 gnu: Add emacs-mit-scheme-doc. 
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): New variable.
 2016-02-03 10:47:21 +01:00
Federico Beffa aad4a48ab4 gnu: scmutils: Generate 'scmutils-autoloads.el' file. 
* gnu/packages/scheme.scm (scmutils): Do it.
 2016-02-03 10:47:21 +01:00
Federico Beffa e037a09f1d gnu: Add emacs-scheme-complete. 
* gnu/packages/emacs.scm (emacs-scheme-complete): New variable.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2016-02-03 10:47:21 +01:00
Mark H Weaver fd9a5b0fc3 gnu: qemu: Update to 2.5.0; add fixes for security flaws. 
* gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file.
* gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
  gnu/packages/patches/qemu-CVE-2015-8558.patch,
  gnu/packages/patches/qemu-CVE-2015-8567.patch,
  gnu/packages/patches/qemu-CVE-2015-8613.patch,
  gnu/packages/patches/qemu-CVE-2015-8701.patch,
  gnu/packages/patches/qemu-CVE-2015-8743.patch,
  gnu/packages/patches/qemu-CVE-2016-1568.patch,
  gnu/packages/patches/qemu-CVE-2016-1922.patch: New files.
* gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the
  new patches.
* gnu/packages/qemu.scm (qemu): Update to 2.5.0.
  [source]: Remove old patches and add new ones.
  [arguments]: Add 'disable-test-qga' phase.
  (%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables.
 2016-02-03 00:05:22 -05:00
Mark H Weaver 80cc3a0a4a gnu: openssl: When computing URI, use 'string-trim-right' not 'string-take'. 
* gnu/packages/tls.scm (openssl)[source]: When computing URI, use
  'string-trim-right' instead of 'string-take'.
 2016-02-02 21:16:44 -05:00
宋文武 4c28ca1df4 gnu: yelp: Update to 3.18.1. 
* gnu/packages/gnome.scm (yelp): Update to 3.18.1.
 2016-02-03 09:54:14 +08:00
宋文武 6a203844c5 gnu: webkitgtk: Update to 2.10.7. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.7.
 2016-02-03 09:37:47 +08:00
Efraim Flashner e81e5fa507 gnu: openssl: Add alternate url. 
* gnu/packages/tls.scm (openssl)[source]: Add alternate url.
 2016-02-02 23:23:24 +02:00
Ludovic Courtès 400ed6acdd gnu: eudev: Add variant that depends on libblkid. 
This fixes a bug whereby /dev/disk/by-{label,id} would be missing on
GuixSD (/dev/disk/by-id would still contain device-mapped partitions
though.)

Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/linux.scm (eudev-with-blkid): New variable.
* gnu/services/base.scm (udev-service): #:udev defaults to
EUDEV-WITH-BLKID.
* gnu/system.scm (%base-packages): Replace EUDEV with EUDEV-WITH-BLKID.
 2016-02-02 21:16:59 +01:00
Federico Beffa 81fc64da7e gnu: aspell: Wrap binary to find dictionaries. 
* gnu/packages/aspell.scm (aspell): Add 'wrap-aspell' phase.
* gnu/system.scm (operating-system-etc-service): Remove 'ASPELL_CONF'
definition.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-02-02 21:16:59 +01:00
Leo Famulari 8c44dabc5a gnu: vdirsyncer: Update to 0.8.1. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.8.1.
[native-inputs]: Add python-hypothesis, python-pytest-subtesthack.
 2016-02-02 14:49:26 -05:00
Leo Famulari 7517e73c75 gnu: Add python-pytest-subtesthack. 
* gnu/packages/python.scm (python-pytest-subtesthack,
python2-pytest-subtesthack): New variables.
 2016-02-02 14:49:26 -05:00
Leo Famulari 6a44697d01 gnu: Add python-hypothesis. 
* gnu/packages/python.scm (python-hypothesis, python2-hypothesis): New
variables.
 2016-02-02 14:49:26 -05:00
David Thompson f861b8b8e0 gnu: Add awscli. 
* gnu/packages/python.scm (awscli): New variable.
 2016-02-02 09:24:17 -05:00
David Thompson 935fcd5cf6 gnu: Add python-botocore. 
* gnu/packages/python.scm (python-botocore): New variable.
 2016-02-02 09:23:00 -05:00
David Thompson ba9da248a6 gnu: Add python-jmespath. 
* gnu/packages/python.scm (python-jmespath): New variable.
 2016-02-02 09:23:00 -05:00
David Thompson a4af21ca6d gnu: Add python-tox. 
* gnu/packages/python.scm (python-tox): New variable.
 2016-02-02 09:23:00 -05:00
David Thompson c0aacfa5b9 gnu: Add python-pluggy. 
* gnu/packages/python.scm (python-pluggy): New variable.
 2016-02-02 09:23:00 -05:00
David Thompson f5bcec6e7d gnu: Add python-rsa. 
* gnu/packages/python.scm (python-rsa, python2-rsa): New variables.
 2016-02-02 09:23:00 -05:00
David Thompson 2b2f2fc179 gnu: Add python-colorama. 
* gnu/packages/python.scm (python-colorama, python2-colorama): New
  variables.
 2016-02-02 09:23:00 -05:00
Ben J. Woodcroft ce294c0445 gnu: Update sortmerna to 2.1. 
* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1.
 2016-02-02 22:42:38 +10:00
Leo Famulari 0889321b5e gnu: ntp: Update to 4.2.8p6. 
Fixes CVE-2015-{7973, 7974, 7975, 7976, 7977, 7978, 7979, 8138, 8158}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p6.
 2016-02-02 03:14:41 -05:00
Mark H Weaver adddd5ba3b gnu: Add linux-libre-4.1. 
* gnu/packages/linux-libre-4.1-i686.conf,
  gnu/packages/linux-libre-4.1-x86_64.conf: New files.
* Makefile.am (KCONFIGS): Add them.
* gnu/packages/linux.scm (linux-libre-4.1): New variable.
 2016-02-02 03:12:29 -05:00
Mark H Weaver 17db07061f gnu: linux-libre: Generalize 'kernel-config' to support variants. 
* gnu/packages/linux.scm (kernel-config): Rewrite to support optional
  #:variant keyword argument.
 2016-02-02 03:12:29 -05:00
Mark H Weaver 5e764e2b6f gnu: linux-libre: Update to 4.4.1. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.1.
  [source]: Remove patch.
 2016-02-01 23:47:35 -05:00
Leo Famulari 4efc8eb275 gnu: Update socat to 1.7.3.1. 
* gnu/packages/networking.scm (socat): Update to 1.7.3.1.
 2016-02-01 19:00:39 -05:00
Leo Famulari 2c5e497672 gnu: keepassx: Update to 2.0.1. 
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.1.
 2016-02-01 18:26:41 -05:00
Eric Bavier 6009df6391 gnu: ccache: Update to 3.2.4. 
* gnu/packages/ccache.scm (ccache): Update to 3.2.4.
 2016-02-01 15:01:20 -06:00
Ludovic Courtès efdcb6f29c install: Make it clear that we refer to the root by label. 
* gnu/system/install.scm (installation-os): Use (title 'label) for the
root file system.
 2016-02-01 08:59:13 +01:00
Eric Bavier e3f755f44c gnu: Add pinball. 
* gnu/packages/games.scm (pinball): New variable.
* gnu/packages/patches/pinball-const-fix.patch,
  gnu/packages/patches/pinball-cstddef.patch,
  gnu/packages/patches/pinball-missing-separators.patch,
  gnu/packages/patches/pinball-src-deps.patch,
  gnu/packages/patches/pinball-system-ltdl.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-01-31 23:46:30 -06:00
Efraim Flashner 917708c276 gnu: python-apsw: Update to 3.9.2-r1. 
* gnu/packages/python.scm (python-apsw): Update to 3.9.2-r1.
[source]: Change to pypi uri syntax.
 2016-02-01 06:18:58 +02:00
Efraim Flashner 55ba649dfb gnu: wayland: Build documentation. 
* gnu/packages/freedesktop.scm (wayland)[native-inputs]: Add graphviz.
 2016-02-01 06:18:58 +02:00
Efraim Flashner f1d9231d9a gnu: python-pillow: Update to 3.1.0. 
* gnu/packages/python.scm (python-pillow): Update to 3.1.0.
[source]: Change to pypi uri syntax.
 2016-02-01 06:18:58 +02:00
David Thompson 2a068aecbf gnu: Add aseprite. 
* gnu/packages/game-development.scm (aseprite): New variable.
 2016-01-31 15:44:20 -05:00
David Thompson 154f6156c0 gnu: Add allegro-4. 
* gnu/packages/game-development.scm (allegro-4): New variable.
 2016-01-31 15:44:19 -05:00
David Thompson d1a0bba029 gnu: obs: Update to 0.13.0. 
* gnu/packages/video.scm (obs): Upgrade to 0.13.0.
 2016-01-31 15:32:18 -05:00
Efraim Flashner e5a2edeba0 gnu: perl-tk: Update to 804.033. 
* gnu/packages/tcl.scm (perl-tk): Update to 804.033.
[source]: Remove patch.
* gnu/packages/patches/perl-tk-x11-discover.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch.
 2016-01-31 14:36:08 +02:00
宋文武 39eefcee97 gnu: weechat: Update to 1.4. 
* gnu/packages/weechat.scm (weechat): Update to 1.4.
 2016-01-31 17:12:46 +08:00
Efraim Flashner 692bb77da9 gnu: pumpa: Update to 0.9.2. 
* gnu/packages/pumpio.scm (pumpa): Update to 0.9.2.
[source]: Add 'file-name' field.
 2016-01-30 22:39:05 +02:00
Alex Kost 171a0a13a4 Rename 'dmd' to 'shepherd' in comments and strings. 
* build-aux/hydra/demo-os.scm (operating-system)[issue]: Point to
  shepherd instead of dmd.
* ROADMAP: Likewise.
* gnu/build/install.scm (directives): Adjust comment.
 2016-01-29 20:21:54 +03:00
Alex Kost d4053c710b services: Rename 'dmd' services to 'shepherd'. 
* gnu/services/shepherd.scm (dmd-root-service-type, %dmd-root-service)
  (dmd-service-type, <dmd-service>, dmd-service, dmd-service?)
  (make-dmd-service, dmd-service-documentation, dmd-service-provision)
  (dmd-service-requirement, dmd-service-respawn, dmd-service-start)
  (dmd-service-stop, dmd-service-auto-start?, dmd-service-modules)
  (dmd-service-imported-modules, dmd-service-file-name, dmd-service-file)
  (dmd-service-back-edges): Rename to...
  (shepherd-root-service-type, %shepherd-root-service, shepherd-service-type)
  (<shepherd-service>, shepherd-service, shepherd-service?)
  (make-shepherd-service, shepherd-service-documentation)
  (shepherd-service-provision, shepherd-service-requirement)
  (shepherd-service-respawn, shepherd-service-start)
  (shepherd-service-stop, shepherd-service-auto-start?)
  (shepherd-service-modules, shepherd-service-imported-modules)
  (shepherd-service-file-name, shepherd-service-file)
  (shepherd-service-back-edges): ...this
* gnu/services.scm: Adjust comments.
* gnu/services/avahi.scm (avahi-dmd-service): Rename to...
  (avahi-shepherd-service): ... this.
* gnu/services/base.scm (%root-file-system-dmd-service)
  (file-system->dmd-service-name, mapped-device->dmd-service-name)
  (dependency->dmd-service-name, file-system-dmd-service)
  (mingetty-dmd-service, nscd-dmd-service, guix-dmd-service)
  (guix-publish-dmd-service, udev-dmd-service, gpm-dmd-service): Rename to...
  (%root-file-system-shepherd-service)
  (file-system->shepherd-service-name, mapped-device->shepherd-service-name)
  (dependency->shepherd-service-name, file-system-shepherd-service)
  (mingetty-shepherd-service, nscd-shepherd-service, guix-shepherd-service)
  (guix-publish-shepherd-service, udev-shepherd-service)
  (gpm-shepherd-service): ... this.
* gnu/services/databases.scm (postgresql-dmd-service): Rename to...
  (postgresql-shepherd-service): ... this.
* gnu/services/desktop.scm (upower-dmd-service, elogind-dmd-service):
  Rename to...
  (upower-shepherd-service, elogind-shepherd-service): ... this.
* gnu/services/dbus.scm (dbus-dmd-service): Rename to...
  (dbus-shepherd-service): ... this.
* gnu/services/lirc.scm (lirc-dmd-service): Rename to...
  (lirc-shepherd-service): ... this.
* gnu/services/mail.scm (dovecot-dmd-service): Rename to...
  (dovecot-shepherd-service): ... this.
* gnu/services/networking.scm (ntp-dmd-service, tor-dmd-service)
  (bitlbee-dmd-service, wicd-dmd-service, network-manager-dmd-service): Rename to...
  (dbus-shepherd-service): ... this.
* gnu/services/ssh.scm (lsh-dmd-service): Rename to...
  (lsh-shepherd-service): ... this.
* gnu/services/web.scm (nginx-dmd-service): Rename to...
  (nginx-shepherd-service): ... this.
* gnu/services/xorg.scm (slim-dmd-service): Rename to...
  (slim-shepherd-service): ... this.
* gnu/system.scm (essential-services): Use '%shepherd-root-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust accordingly.
* guix/scripts/system.scm (dmd-service-node-label, dmd-service-node-type)
  (export-dmd-graph): Likewise.
* tests/guix-system.sh: Likewise.
* tests/services.scm ("dmd-service-back-edges"): Rename to...
  ("shepherd-service-back-edges"): Adjust accordingly.
* doc/guix.texi: Likewise.
* doc/images/service-graph.dot: Use 'shepherd' service name.
 2016-01-29 20:21:53 +03:00
Alex Kost 26b94866ad services: xorg: Use 'shepherd' instead of 'dmd'. 
* gnu/services/xorg.scm (slim-configuration-dmd): Rename to...
  (slim-configuration-shepherd): ... this.
  (slim-shepherd-service): Adjust accordingly.
  (slim-service): Take 'shepherd' keyword argument.
 2016-01-29 20:21:53 +03:00
Alex Kost fe1ad5f5db services: shepherd: Rename shepherd configuration file. 
* gnu/services/shepherd.scm (dmd-configuration-file): Rename to...
  (shepherd-configuration-file): ... this.  Use "shepherd.conf" name.
  (dmd-boot-gexp): Use it.
 2016-01-29 20:21:53 +03:00
Alex Kost 0190c1c02f Rename (gnu services dmd) to (gnu services shepherd). 
* gnu/services/dmd.scm: Rename to...
* gnu/services/shepherd.scm: ... this.
* gnu/system.scm: Use it.
* gnu/system/install.scm: Likewise.
* gnu/services/xorg.scm: Likewise.
* gnu/services/web.scm: Likewise.
* gnu/services/ssh.scm: Likewise.
* gnu/services/networking.scm: Likewise.
* gnu/services/mail.scm: Likewise.
* gnu/services/lirc.scm: Likewise.
* gnu/services/desktop.scm: Likewise.
* gnu/services/dbus.scm: Likewise.
* gnu/services/databases.scm: Likewise.
* gnu/services/base.scm: Likewise.
* gnu/services/avahi.scm: Likewise.
* guix/scripts/system.scm: Likewise.
* tests/services.scm: Likewise.
* tests/guix-system.sh: Likewise.
* doc/guix.texi (Shepherd Services): Adjust accordingly.
* gnu-system.am (GNU_SYSTEM_MODULES): Likewise.
* po/guix/POTFILES.in: Likewise.
 2016-01-29 20:21:53 +03:00
Alex Kost b8c02c18b4 Rename '/root/etc/dmd' directory and 'do-not-kill' file. 
* gnu/services/base.scm (%do-not-kill-file): Rename to
  "/etc/shepherd/do-not-kill".
* gnu/build/linux-boot.scm (mount-root-file-system): Rename
  "/root/etc/dmd" to "/root/etc/shepherd".
 2016-01-29 20:20:19 +03:00
Alex Kost 34044d551f Use 'shepherd' instead of 'dmd' as init system. 
* gnu/services/dmd.scm (dmd-boot-gexp): Use binary from 'shepherd' package.
  (dmd-root-service-type): Use 'shepherd' package.
  (%default-modules): Use (shepherd service) module.
* gnu/services/base.scm (%root-file-system-dmd-service): Use
  'stop-logging' procedure to close shepherd log.
 2016-01-29 12:07:32 +03:00
Alex Kost d312a8328d gnu: elogind: Use 'shepherd' input. 
* gnu/packages/freedesktop.scm (elogind)[inputs]: Replace 'dmd' with
  'shepherd'.
 2016-01-29 12:07:32 +03:00
Federico Beffa 13fe4891fa gnu: emacs: Find packages in "~/.guix-profile". 
* gnu/packages/emacs.scm (emacs)[inputs]: Add 'guix-src' input.
  [arguments]: Add 'install-site-start' phase.

Co-authored-by: Alex Kost <alezost@gmail.com>
 2016-01-29 11:13:15 +03:00
Alex Kost 2c776157ad gnu: guix: Update development snapshot to c3f29bc. 
* gnu/packages/package-management.scm (guix-devel): Update to c3f29bc.
 2016-01-29 11:13:15 +03:00
Rene Saavedra c3f29bc928 gnu: Add gtk-vnc. 
* gnu/packages/gnome.scm (gtk-vnc): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
 2016-01-29 08:36:07 +08:00
Efraim Flashner f88f0d20e4 gnu: ffmpeg: Add hardware acceleration, opengl support. 
* gnu/packages/video.scm (ffmpeg)[inputs]: Add libvdpau, libx11, mesa.
[arguments]: Add configure-flags '--enable-opengl' '--enable-x11grab'.
 2016-01-28 18:14:58 +02:00
Leo Famulari 03675cad53 gnu: icedtea-7: Update to 2.6.4. 
Fixes CVE-2015-{7575, 8126, 8472} and CVE-2016-{0402, 0448, 0466, 0483,
0494}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.4.
 2016-01-28 08:48:35 -05:00
Leo Famulari 559239af7a gnu: icedtea-6: Update to 1.13.10. 
Fixes CVE-2015-{8126, 8472} and CVE-2016-{0402, 0448, 0466, 0483, 0494}.

* gnu/packages/java.scm (icedtea-6): Update to 1.13.10.
 2016-01-28 08:48:35 -05:00
Mark H Weaver 593c366bde Merge branch 'core-updates' 2016-01-28 07:29:13 -05:00
Ludovic Courtès 133056bd74 gnu: shepherd: Update to 0.3. 
* gnu/packages/admin.scm (shepherd): Update to 0.3.
 2016-01-28 11:45:03 +01:00
Mark H Weaver 29a780147d gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs. 
* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch,
  gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New
  files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-01-28 00:34:20 -05:00
Ludovic Courtès 9a8b9eb8de services: guix: Provide Guix via 'profile-service-type'. 
* gnu/services/base.scm (guix-service-type): Extend
PROFILE-SERVICE-TYPE.
* gnu/system.scm (%base-packages): Remove GUIX.
 2016-01-27 15:48:35 +01:00
Ludovic Courtès c273d81bfa services: dmd: Provide dmd via 'profile-service-type'. 
* gnu/services/dmd.scm (dmd-root-service-type): Extend
PROFILE-SERVICE-TYPE.
* gnu/system.scm (%base-packages): Remove dmd.
 2016-01-27 15:48:35 +01:00
Ludovic Courtès e932d371e5 gnu: Add snapshot of the GNU Shepherd. 
* gnu/packages/admin.scm (shepherd): New variable.
 2016-01-27 15:48:35 +01:00
Ben Woodcroft d114ceebac gnu: Add ruby-http-cookie. 
* gnu/packages/ruby.scm (ruby-http-cookie): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 5799aadde4 gnu: Add ruby-domain-name. 
* gnu/packages/ruby.scm (ruby-domain-name): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 3b44bcdfcd gnu: Add ruby-unf. 
* gnu/packages/ruby.scm (ruby-unf): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 6f390716b6 gnu: Add ruby-shoulda. 
* gnu/packages/ruby.scm (ruby-shoulda): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 3885c58b25 gnu: Add ruby-shoulda-matchers-2. 
* gnu/packages/ruby.scm (ruby-shoulda-matchers-2): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft e4fea00896 gnu: Add ruby-shoulda-matchers. 
* gnu/packages/ruby.scm (ruby-shoulda-matchers): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 4dfa39cc67 gnu: Add ruby-shoulda-context. 
* gnu/packages/ruby.scm (ruby-shoulda-context): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 4fea500bb1 gnu: Add ruby-sqlite3. 
* gnu/packages/ruby.scm (ruby-sqlite3): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft d39b606c88 gnu: Add ruby-mime-types. 
* gnu/packages/ruby.scm (ruby-mime-types): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft eb5e0bd96e gnu: Add ruby-fivemat. 
* gnu/packages/ruby.scm (ruby-fivemat): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 32d1c06ffa gnu: Add ruby-mime-types-data. 
* gnu/packages/ruby.scm (ruby-mime-types-data): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft e582fa93a8 gnu: Add ruby-minitest-rg. 
* gnu/packages/ruby.scm (ruby-minitest-rg): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft e07ef1d625 gnu: Add ruby-minitest-bonus-assertions. 
* gnu/packages/ruby.scm (ruby-minitest-bonus-assertions): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 685d0d2fbe gnu: Add ruby-minitest-moar. 
* gnu/packages/ruby.scm (ruby-minitest-moar): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 99fc5cd577 gnu: Add ruby-minitest-pretty-diff. 
* gnu/packages/ruby.scm (ruby-minitest-pretty-diff): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 39dc0eb502 gnu: Add ruby-minitest-focus. 
* gnu/packages/ruby.scm (ruby-minitest-focus): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 8092e33376 gnu: Add ruby-turn. 
* gnu/packages/ruby.scm (ruby-turn): New variable.
 2016-01-28 00:08:32 +10:00
Efraim Flashner f66842dccc gnu: Add aria2. 
* gnu/packages/bittorrent.scm (aria2): New variable.
 2016-01-27 14:39:31 +02:00
Efraim Flashner cd44f1c1b0 gnu: c-ares: Move to adns.scm. 
* gnu/packages/aria2.scm (c-ares): Move to...
* gnu/packages/adns.scm (c-ares): ... here.
* gnu/packages/aria2.scm: Remove file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove aria2.scm.
 2016-01-27 14:13:45 +02:00
Andreas Enge bb2120cd1d gnu: libressl: Update to 2.2.5. 
* gnu/packages/tls.scm (libressl): Update to 2.2.5.
 2016-01-26 21:40:35 +01:00
Leo Famulari 7432386adb gnu: nginx: Update to 1.8.1 [fixes CVE-2016-{0742,0746,0747}]. 
* gnu/packages/web.scm (nginx): Update to 1.8.1.
 2016-01-26 15:27:58 -05:00
Ricardo Wurmus 61eecd71cc gnu: alsa-modular-synth: Update to 2.1.2. 
* gnu/packages/audio.scm (alsa-modular-synth): Update to 2.1.2.
 2016-01-26 18:46:54 +01:00
Andreas Enge a394c60aa3 gnu: hop: Add input avahi. 
gnu/packages/scheme.scm (hop)[inputs]: Add avahi.
 2016-01-26 15:10:23 +01:00
Ben Woodcroft edf8caae6d gnu: Add ruby-ttfunk. 
* gnu/packages/ruby.scm (ruby-ttfunk): New variable.
 2016-01-26 16:27:40 +10:00
Ben Woodcroft acb6be4298 gnu: Add ruby-ascii85. 
* gnu/packages/ruby.scm (ruby-ascii85): New variable.
 2016-01-26 16:25:11 +10:00
Ben Woodcroft f3e085a8d5 gnu: Add ruby-afm. 
* gnu/packages/ruby.scm (ruby-afm): New variable.
 2016-01-26 16:22:17 +10:00
Ben Woodcroft 1f1d71e09f gnu: Add ruby-rc4. 
* gnu/packages/ruby.scm (ruby-rc4): New variable.
 2016-01-26 16:21:05 +10:00
Ben Woodcroft 72ccbfe314 gnu: Add ruby-hashery. 
* gnu/packages/ruby.scm (ruby-hashery): New variable.
 2016-01-26 16:19:41 +10:00
Ben Woodcroft 0832804ed5 gnu: Add ruby-rubytest-cli. 
* gnu/packages/ruby.scm (ruby-rubytest-cli): New variable.
 2016-01-26 16:17:01 +10:00
Ben Woodcroft 78bb471f37 gnu: Add ruby-lemon. 
* gnu/packages/ruby.scm (ruby-lemon): New variable.
 2016-01-26 16:15:24 +10:00
Ben Woodcroft 9273ee8f44 gnu: Add ruby-ae. 
* gnu/packages/ruby.scm (ruby-ae): New variable.
 2016-01-26 16:11:49 +10:00
Ben Woodcroft 120fc74b21 gnu: Add ruby-qed. 
* gnu/packages/ruby.scm (ruby-qed): New variable.
 2016-01-26 16:06:10 +10:00
Ben Woodcroft 90fcedf220 gnu: Add ruby-brass. 
* gnu/packages/ruby.scm (ruby-brass): New variable.
 2016-01-26 16:02:15 +10:00
Ben Woodcroft 7c8131c76b gnu: Add ruby-rubytest. 
* gnu/packages/ruby.scm (ruby-rubytest): New variable.
 2016-01-26 15:59:39 +10:00
Ben Woodcroft a78d62f432 gnu: sra-tools: Update to 2.5.7. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.7.
 2016-01-26 10:59:13 +10:00
Ben Woodcroft fe91666b79 gnu: ncbi-vdb: Update to 2.5.7. 
gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.7.
 2016-01-26 10:59:13 +10:00
Ben Woodcroft d3b39bc231 gnu: ngs-sdk: Update to 1.2.3. 
gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.3.
 2016-01-26 10:59:13 +10:00
Andreas Enge 46854e99ca gnu: webkitgtk-2.4, webkitgtk/gtk+-2, qt: Disable parallel builds. 
* gnu/packages/webkit.scm (webkitgtk-2.4, webkitgtk/gtk+-2):
  Disable parallel builds as suggested in
  https://lists.gnu.org/archive/html/guix-devel/2016-01/msg00837.html .
* gnu/packages/qt.scm (qt): Likewise.
 2016-01-25 23:33:54 +01:00
Alex Kost 0833d0c025 gnu: aspell-dict-en: Update to 2016.01.19-0. 
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.01.19-0.
 2016-01-25 22:11:47 +03:00
Efraim Flashner 8581f4c195 gnu: Add python-efl. 
* gnu/packages/enlightenment.scm (python-efl, python2-efl): New variables.
 2016-01-25 11:41:23 +02:00
Efraim Flashner 2259442b15 gnu: cmocka: New variable. 
* gnu/packages/check.scm (cmocka): New variable.
 2016-01-25 11:39:42 +02:00
Ben Woodcroft 23f3cbb8de gnu: Add pixz. 
* gnu/packages/compression.scm (pixz): New variable.
 2016-01-25 18:45:33 +10:00
Mark H Weaver 412bee5e29 Merge branch 'master' into core-updates 2016-01-24 21:04:54 -05:00
Ludovic Courtès f6afc48008 gnu: grue-hunter: Use 'https' URL. 
* gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
 2016-01-25 00:11:22 +01:00
Ben Woodcroft bcadaf0050 gnu: Add sortmerna. 
* gnu/packages/bioinformatics.scm (sortmerna): New variable.
 2016-01-25 08:35:11 +10:00
Andreas Enge 447f3ae7c1 gnu: calibre: Update to 2.49.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.49.0.
 2016-01-24 20:12:05 +01:00
Ricardo Wurmus 541ed7b030 gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3. 
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
  building libstdc++-v3 and enable building C++ compiler.
 2016-01-24 14:25:20 +01:00
Ricardo Wurmus a763ce7da9 gnu: Add Qtractor. 
* gnu/packages/music.scm (qtractor): New variable.
 2016-01-24 14:20:52 +01:00
Ricardo Wurmus 8ddc5d5723 gnu: yoshimi: Update to 1.3.8.2. 
* gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
 2016-01-24 14:19:29 +01:00
Efraim Flashner 6b6a62dd05 gnu: privoxy: Update to 3.0.24. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.24.
 2016-01-24 09:20:55 +02:00
Efraim Flashner be866fb13e gnu: tor: Update to 0.2.7.6. 
* gnu/packages/tor.scm (tor): Update to 0.2.7.6.
 2016-01-24 07:21:33 +02:00
Efraim Flashner 17206f72ed gnu: myrepos: Update to 1.20160123. 
* gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
 2016-01-24 07:04:05 +02:00
Efraim Flashner 4c73302739 gnu: nano: Update to 2.5.1. 
* gnu/packages/nano.scm (nano): Update to 2.5.1.
 2016-01-24 06:46:01 +02:00
Mark H Weaver c5184468f5 build: container: Make 'unprivileged-user-namespace-supported?' more robust. 
* gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only
  read and check the first character, to cope with a possible newline in the
  (pseudo-)file.
 2016-01-23 18:44:03 -05:00
Leo Famulari fe17fb4a2c gnu: letsencrypt and acme: Update to 0.2.0. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.2.0.
(acme): Update to 0.2.0.
 2016-01-23 17:39:08 -05:00
Efraim Flashner 21565719e5 gnu: claws-mail: Update to 3.13.2. 
* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
 2016-01-23 20:13:31 +02:00
Ricardo Wurmus 3a40a92c73 gnu: Add cufflinks. 
* gnu/packages/bioinformatics.scm (cufflinks): New variable.
 2016-01-23 09:15:11 +01:00
Ricardo Wurmus 94ce537eac gnu: Add TopHat. 
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-23 08:53:10 +01:00
Ricardo Wurmus 3062d750b4 gnu: star: Update to 2.5.1b. 
* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b.
[source]: Remove bundled htslib sources and pre-built binaries.
[arguments]: Add phase "do-not-use-bundled-htslib".
[inputs]: Add "htslib".
 2016-01-23 08:40:14 +01:00
Ricardo Wurmus c0266e8d03 gnu: star: Use "modify-phases" syntax. 
* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases"
  syntax.
 2016-01-23 08:40:14 +01:00
Efraim Flashner ebf89f134c gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233]. 
* gnu/packages/linux.scm (fuse): Update to 2.9.5.
 2016-01-22 09:00:34 +02:00
宋文武 6871628999 gnu: mozjs: Make milestone.pl compatible with Perl 5.22+. 
* gnu/packages/gnuzilla.scm (mozjs, mozjs-24)[source]: Add snippet.
 2016-01-22 14:42:10 +08:00
Eric Bavier b6d937d99e gnu: american-fuzzy-lop: Update to 1.96b. 
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b.
  [arguments]: Create symbolic link to custom qemu, rather than copying.
 2016-01-21 23:54:48 -06:00
Eric Bavier 2d8211ab30 gnu: american-fuzzy-lop: Fix qemu configure flags. 
Fixes regression introduced in 06da1a6.

* gnu/packages/debug.scm (american-fuzzy-lop)[qemu]: Override inherited
  #:configure-flags.
 2016-01-21 23:54:48 -06:00
Eric Bavier 1022da10e1 gnu: texi2html: Disable tests. 
* gnu/packages/texinfo.scm (texi2html): New 'arguments' field.
 2016-01-21 22:09:42 -06:00
Leo Famulari 765973cd65 gnu: Add iftop. 
* gnu/packages/admin.scm (iftop): New variable.
 2016-01-21 20:21:19 -05:00
Leo Famulari c2af02602a Revert "gnu: Add iftop." 
This reverts commit 45da8c6dd1.
 2016-01-21 20:11:21 -05:00
Leo Famulari 45da8c6dd1 gnu: Add iftop. 
* gnu/packages/admin.scm (iftop): New variable.
 2016-01-21 18:11:12 -05:00
Ludovic Courtès 6b779207ee system: grub: Search root device by label or UUID if possible. 
Fixes <http://bugs.gnu.org/22281>.
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.

* gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter.  Replace
'search --file' command in the output with whatever 'grub-root-search'
returns.
(grub-root-search): New procedure.
(grub-configuration-file): Add 'store-fs' parameter.  Use
'grub-root-search' instead of hard-coded 'search --file' commands.
* gnu/system.scm (store-file-system,
operating-system-store-file-system): New procedures.
(operating-system-grub.cfg): Use it, and adjust call to
'grub-configuration-file'.
* tests/system.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
 2016-01-22 00:02:52 +01:00
Mark H Weaver 3738d8700f gnu: ffmpeg: Update to 2.8.5. 
* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
 2016-01-21 10:30:21 -05:00
Mark H Weaver 0c0207a93b gnu: gajim: Update to 0.16.5 [fixes CVE-2015-8688]. 
* gnu/packages/messaging.scm (gajim): Update to 0.16.5.
  [arguments]: Disable tests.
 2016-01-21 10:24:44 -05:00
Ricardo Wurmus 6c92d8dd35 gnu: bind-utils: Build and install "nsupdate". 
* gnu/packages/dns.scm (bind-utils)[arguments]: Build and install
  "nsupdate" executable.
 2016-01-21 15:53:35 +01:00
Ricardo Wurmus bd0eb6672b gnu: bind-utils: Generalize "build" and "install" phases. 
* gnu/packages/dns.scm (bind-utils)[arguments]: Generalize "build" and
  "install" phases.
 2016-01-21 15:53:35 +01:00
Ricardo Wurmus b2844d8f14 gnu: bind-utils: Use "modify-phases" syntax. 
* gnu/packages/dns.scm (bind-utils): Use "modify-phases" syntax.
 2016-01-21 15:53:35 +01:00
Pjotr Prins 897092875e gnu: r-qtl: Update to 1.38-4. 
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.38-4.
 2016-01-21 11:16:12 +01:00
Mark H Weaver 1207a0c33e gnu: libxmp: Update to 4.3.10. 
* gnu/packages/audio.scm (libxmp): Update to 4.3.10.
 2016-01-21 00:44:46 -05:00
Mark H Weaver 86fa2ea92f gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}. 
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
  gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
  gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff): Update to 4.0.6.
  [source]: Add patches.
 2016-01-21 00:30:15 -05:00
Eric Bavier 7ed0145712 gnu: Add NQC. 
* gnu/packages/lego.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2016-01-20 22:06:27 -06:00
Leo Famulari feb767b23c gnu: Add transmission-remote-cli. 
* gnu/packages/bittorrent.scm (transmission-remote-cli): New variable.
 2016-01-20 20:19:46 -05:00
Eric Bavier a2190cccc2 gnu: Add dependencies on Perl modules as needed. 
This is a follow-on to bb8afbf5.

* gnu/packages/language.scm (perl-lingua-en-inflect, perl-lingua-stem)
  (perl-snowball-norwegian, perl-snowball-swedish): Add 'native-inputs'
  field.
* gnu/packages/perl.scm (perl-aliased, perl-class-accessor-chained)
  (perl-datetime-set, perl-datetime-format-ical, perl-datetime-locale)
  (perl-error, perl-module-runtime, perl-module-runtime-conflicts)
  (perl-path-class, perl-posix-strftime-compiler, perl-readonly)
  (perl-test-differences, perl-test-pod, perl-test-trap)
  (perl-text-aligner, perl-text-glob, perl-text-table, perl-tie-ixhash)
  (perl-time-mock): Ditto.
  (perl-config-any): Add 'propagated-inputs' field.
  (perl-data-page, perl-datetime, perl-datetime-format-natural)
  (perl-moosex-getopt, perl-moosex-role-parameterized)
  (perl-moosex-types, perl-namespace-autoclean, perl-params-validate)
  (perl-tree-simple-visitorfactory)[native-inputs]: Add PERL-MODULE-BUILD.
  (perl-file-changenotify)[native-inputs]: Ditto.
  [propagated-inputs]: Add PERL-MODULE-PLUGGABLE.
  (perl-datetime-format-flexible, perl-test-writevariants)
  [propagated-inputs]: Ditto.
  (perl-test-mockobject): Add 'arguments' field.
* gnu/packages/mail.scm (perl-email-abstract)[propagated-inputs]: Ditto.
* gnu/packages/web.scm (perl-datetime-format-http, perl-io-socket-ip)
  (perl-plack-middleware-methodoverride, perl-uri-find)
  (perl-www-mechanize): Add 'native-inputs' field.
  (perl-html-template, perl-http-server-simple): Add 'propagated-inputs'
  field.
  (perl-apache-logformat-compiler, perl-html-tree)[native-inputs]:
  Add PERL-MODULE-BUILD.
  (perl-catalyst-runtime)[propagated-inputs]: Add PERL-MODULE-PLUGGABLE.
  (perl-finance-quote)[propagated-inputs]: Add PERL-CGI.
 2016-01-20 17:45:31 -06:00
Eric Bavier 97b07aaa41 gnu: Add perl-module-pluggable. 
This Perl module was moved out of Perl core in v5.19.0.

* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-20 17:45:31 -06:00
Eric Bavier 7b158c4ee2 gnu: Add perl-cgi. 
The CGI module was removed from Perl core in v5.21.0.

* gnu/packages/web.scm (perl-cgi): New variable.
 2016-01-20 17:45:31 -06:00
Ludovic Courtès 893106cbbf services: avahi: Export service type. 
* gnu/services/avahi.scm: Export 'avahi-service-type'.
 2016-01-21 00:22:34 +01:00
Mark H Weaver 80b64ee2d8 gnu: isc-dhcp: Update bundled bind to 9.9.8-P3 [fixes CVE-2015-8704]. 
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.8-P3.
 2016-01-20 14:58:40 -05:00
Mark H Weaver d912db5bc0 gnu: bind-utils: Update to 9.10.3-P3 [fixes CVE-2015-8704]. 
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P3.
 2016-01-20 14:57:06 -05:00
Mark H Weaver beed3af565 gnu: linux-libre: Add fix for CVE-2016-0728. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
 2016-01-20 13:23:42 -05:00
David Thompson d4df203292 gnu: obs: Add support for webcams. 
* gnu/packages/video.scm (obs)[inputs]: Add v4l-utils.
 2016-01-20 11:46:45 -05:00
David Thompson 945d985aab gnu: Add v4l-utils. 
* gnu/packages/video.scm (v4l-utils): New variable.
 2016-01-20 11:46:45 -05:00
Andreas Enge f32ee38fcd gnu: arb: Correct patch. 
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.

This is a follow-up to commit ffc8f34511.
 2016-01-20 16:57:17 +01:00
Andreas Enge ffc8f34511 gnu: arb: Update to 2.8.1. 
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-01-20 16:33:34 +01:00
Andreas Enge 05944b3aa6 gnu: doxygen: Drop propagated input graphviz. 
* gnu/packages/doxygen.scm (doxygen)[propagated-inputs]: Drop graphviz.
 2016-01-20 13:23:25 +01:00
Andreas Enge 7c853c02b8 gnu: doxygen: Update to 1.8.11. 
* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
  Drop one patch.
  [build-system]: Switch to cmake-build-system, since gnu-build-system
  is not supported any more.
  [arguments]: Adapt.
  [native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-01-20 13:19:48 +01:00
Efraim Flashner 4c3d2b2a8f gnu: enlightenment: Update to 0.20.3. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.3.
 2016-01-20 12:37:21 +02:00
Efraim Flashner 0568dbabe0 gnu: libshout: Update to 2.4.1. 
* gnu/packages/xiph.scm (libshout): Update to 2.4.1.
 2016-01-20 02:12:23 +02:00
Efraim Flashner 1c3d37e648 gnu: opusfile: Update to 0.7. 
* gnu/packages/xiph.scm (opusfile): Update to 0.7.
 2016-01-20 02:12:23 +02:00
Efraim Flashner 275cc09280 gnu: opus: Update to 1.1.2. 
* gnu/packages/xiph.scm (opus): Update to 1.1.2.
 2016-01-20 02:12:23 +02:00
Ludovic Courtès 55ca5e8095 gnu: lilypond: Double 'max-silent-time'. 
Suggested by Mark H Weaver <mhw@netris.org>.

* gnu/packages/music.scm (lilypond)[properties]: New field.
 2016-01-19 22:14:15 +01:00
Christopher Allan Webber 16966d5b4d gnu: fdm: Adjust license link to point to web-accessible copy of command.c 
* gnu/packages/mail.scm (fdm): Adjusted license field
 2016-01-19 07:54:18 -08:00
Christopher Allan Webber 34dd26af49 gnu: Add fdm. 
* gnu/packages/mail.scm (fdm): New variable.
 2016-01-18 21:51:45 -08:00
Mark H Weaver afe9f40949 Merge branch 'master' into core-updates 2016-01-19 00:18:37 -05:00
Christopher Allan Webber 1348185ac2 gnu: Add linux-libre-4.2.5 
* gnu/packages/linux.scm (linux-libre-4.2.5): New variable.
 2016-01-18 15:10:38 -08:00
Efraim Flashner 26da7c2606 gnu: mpv: Update to 0.15.0. 
* gnu/packages/video.scm (mpv): Update to 0.15.0.
 2016-01-18 22:26:56 +02:00
Alex Kost 60edbe2297 gnu: magit: Update to 2.4.0. 
* gnu/packages/emacs.scm (magit): Update to 2.4.0.
 2016-01-18 22:40:33 +03:00
Alex Kost d44d60d211 gnu: sxiv: Update to 1.3.2. 
* gnu/packages/sxiv.scm (sxiv): Update to 1.3.2.
 2016-01-18 22:40:33 +03:00
Alex Kost 4c896c9195 gnu: manaplus: Update to 1.6.1.16. 
* gnu/packages/games.scm (manaplus): Update to 1.6.1.16.
 2016-01-18 22:40:33 +03:00
Efraim Flashner 264ae686fa python2-jsonschema: Add python2-functools32 to inputs. 
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Add
python2-functools32.
(python2-wheel)[native-inputs]: Specify python2-jsonschema. Add
python2-functools32.
(python2-requests)[propagated-inputs]: Specify python2-wheel.
(python2-ipython)[inputs]: Specify python2-jsonschema, python2-requests.
(python2-rauth)[propagated-inputs]: Specify python2-requests.
* gnu/packages/openstack.scm (python2-requests-mock)[propagated-inputs]:
Specify python2-requests.
(python2-tempest-lib)[propagated-inputs]: Specify python2-jsonschema.
(python2-oslosphinx)[propagated-inputs]: Specify python2-requests.
(python2-keystoneclient)[porpagated-inputs]: Specify python2-requests.
[native-inputs]: Specify python2-oslosphinx, python2-requests-mock,
python2-tempest-lib.
(python2-swiftclient)[propagated-inputs]: Specify python2-requests,
python2-oslosphinx.
 2016-01-18 17:23:37 +02:00
Efraim Flashner 058247efff gnu: datamash: Update to 1.1.0. 
* gnu/packages/datamash.scm (datamash): Update to 1.1.0.
 2016-01-18 12:14:20 +02:00
Mark H Weaver 8047d13dcf gnu: mariadb: Update to 10.0.23. 
* gnu/packages/databases.scm (mariadb): Update to 10.0.23.
 2016-01-18 01:43:07 -05:00
Mark H Weaver 51a277d8e8 gnu: rsync: Update to 3.1.2. 
* gnu/packages/rsync.scm (rsync): Update to 3.1.2.
 2016-01-17 21:44:31 -05:00
Ricardo Wurmus e8309291a7 gnu: solfege: Build scores with Lilypond. 
* gnu/packages/music.scm (solfege)[inputs]: Add "lilypond".
 2016-01-17 22:57:58 +01:00
Ricardo Wurmus 18ef998bfc gnu: bristol: Remove SSE flags on platforms other than x86_64 and i686. 
* gnu/packages/music.scm (bristol)[arguments]: Add phase
"remove-sse-flags" to remove unsupported optimizations on platforms
other than x86_64 and i686.
 2016-01-17 22:57:58 +01:00
Ludovic Courtès b153f9f0a9 linux-initrd: Remove "usbkbd" from the default set of modules. 
Reported by Ricardo Wurmus <rekado@elephly.net>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20433#39>.

* gnu/system/linux-initrd.scm (base-initrd): Remove "usbkbd".
 2016-01-17 22:01:47 +01:00
Efraim Flashner e8d2168c27 gnu: Add git-annex-remote-hubic. 
* gnu/packages/version-control.scm (git-annex-remote-hubic): New variable.
 2016-01-17 22:37:04 +02:00
Efraim Flashner c18f636823 gnu: Add python-urllib3. 
* gnu/packages/python.scm (python-urllib3, python2-urllib3): New variables.
 2016-01-17 22:37:04 +02:00
Efraim Flashner e1ba074999 gnu: python-wheel: Clarify description. 
* gnu/packages/python.scm (python-wheel): Do it.
 2016-01-17 22:37:04 +02:00
Efraim Flashner 10468636ff gnu: python-pytest-cov: Clarify description. 
* gnu/packages/python.scm (python-pytest-cov): Do it.
 2016-01-17 22:37:04 +02:00
Efraim Flashner 1abe448d56 gnu: Add python2-functools32. 
* gnu/packages/python.scm (python2-functools32): New variable.
 2016-01-17 22:37:04 +02:00
Efraim Flashner 5988c299c4 gnu: Add python-pyasn1-modules. 
* gnu/packages/python.scm (python-pyasn1-modules)
(python2-pyasn1-modules): New variables.
 2016-01-17 22:37:04 +02:00
Efraim Flashner 81f7f29752 gnu: Add python-rauth. 
* gnu/packages/python.scm (python-rauth, python2-rauth): New variables.
 2016-01-17 22:37:04 +02:00
Efraim Flashner 8f0cc2ffce gnu: Add python-swiftclient. 
* gnu/packages/openstack.scm (python-swiftclient, python2-swiftclient):
New variables.
 2016-01-17 22:37:04 +02:00
Efraim Flashner 7a5b944eb5 gnu: Add python-futures. 
* gnu/packages/python.scm (python-futures, python2-futures): New variables.
 2016-01-17 22:37:04 +02:00
Efraim Flashner c9e330d001 gnu: Add python-keystoneclient. 
* gnu/packages/openstack.scm (python-keystoneclient)
(python2-keystoneclient): New variables.
 2016-01-17 22:37:04 +02:00
Ricardo Wurmus fb492b9a64 gnu: vmpk: Update to 0.6.2a. 
* gnu/packages/music.scm (vmpk): Update to 0.6.2a.
 2016-01-17 19:57:07 +01:00
Ricardo Wurmus cfac12723a gnu: drumstick: Update to 1.0.2. 
* gnu/packages/music.scm (drumstick): Update to 1.0.2.
 2016-01-17 19:57:00 +01:00
Efraim Flashner 81c29cccaa gnu: mpv: Add features. 
* gnu/packages/video.scm (mpv)[inputs]: Add libvdpau.
[arguments]: Add gpl3 and zsh completion flags.
 2016-01-17 20:43:51 +02:00
Efraim Flashner 3161d32d37 gnu: Add vdpauinfo. 
* gnu/packages/video.scm (vdpauinfo): New variable.
 2016-01-17 20:43:51 +02:00
Efraim Flashner d5650f86a7 gnu: Add libvdpau. 
* gnu/packages/video.scm (libvdpau): New variable.
 2016-01-17 20:43:51 +02:00
Ludovic Courtès bb8afbf5a1 gnu: Add dependency on Perl's 'Module::Build' as needed. 
'Module::Build' was deprecated in Perl 5.20 and removed in 5.22.
Some packages need to explicitly depend on it now.

* gnu/packages/perl.scm (perl-class-factory-util):
(perl-date-manip, perl-devel-checkbin): Add 'native-inputs' field.
(perl-module-build)[description]: Mention that it used to be in Perl.
* gnu/packages/web.scm (perl-cgi-simple)[native-inputs]: Add
PERL-MODULE-BUILD.
 2016-01-17 18:41:20 +01:00
Eric Bavier 2328b47c64 gnu: Add autojump. 
* gnu/packages/admin.scm (autojump): New variable.
 2016-01-17 01:44:15 -06:00
Eric Bavier f5a8491b69 gnu: hevea: Update to 2.28. 
* gnu/packages/ocaml.scm (hevea): Update to 2.28.
  [arguments]: Add 'patch-/bin/sh phase.
 2016-01-17 01:04:43 -06:00
Eric Bavier 90907a22bc gnu: unison: Add "doc" output. 
* gnu/packages/ocaml.scm (unison)[source]: Use svn-fetch with snippet.
  [outputs]: New field.
  [native-inputs]: Add ghostscript, texlive, hevea, and lynx.
  [arguments]: Add 'install-doc phase.
 2016-01-17 01:04:43 -06:00
Ricardo Wurmus 2309ed6862 gnu: samtools-0.1: Adapt to changes in "samtools" variable. 
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Add
  "LIBCURSES" make flag; delete "configure" phase; disable tests outside
  of "substitute-keyword-arguments".
 2016-01-16 15:50:51 +01:00
Ludovic Courtès 7ba903b6db linux-modules: Support 'modprobe.blacklist' on the command line. 
* gnu/build/linux-modules.scm (file-name->module-name)
(module-black-list): New procedure.
* gnu/build/linux-modules.scm (load-linux-module*): Add #:black-list
parameter.
[black-listed?, load-dependencies]: New procedures.
Use them.
 2016-01-16 14:45:47 +01:00
Alex Kost b8300494c0 Move <boot-parameters> to (gnu system). 
* guix/scripts/system.scm (previous-grub-entries)
  (display-system-generation): Use accessors instead of matching
  <boot-parameters>.
  (boot-parameters, boot-parameters?, boot-parameters-label)
  (boot-parameters-root-device, boot-parameters-kernel)
  (boot-parameters-kernel-arguments, read-boot-parameters): Move to...
* gnu/system.scm: ... here. Export them.
 2016-01-16 13:02:21 +03:00
宋文武 c3e919d7a0 gnu: Add python-hy. 
* gnu/packages/python.scm (python-hy, python2-hy): New variables.
 2016-01-16 08:18:37 +08:00
宋文武 e224b7d0bd gnu: Add python-rply. 
* gnu/packages/python.scm (python-rply, python2-rply): New variables.
 2016-01-16 08:18:37 +08:00
宋文武 4ecdeef8ae gnu: Add python-astor. 
* gnu/packages/python.scm (python-astor, python2-astor): New variables.
 2016-01-16 08:18:37 +08:00
宋文武 c06a3de93a gnu: Add python-clint. 
* gnu/packages/python.scm (python-clint, python2-clint): New variables.
 2016-01-16 08:17:04 +08:00
宋文武 2216e15cc3 gnu: Add python-args. 
* gnu/packages.scm (python-args, python2-args): New variables.
 2016-01-16 08:16:51 +08:00
Mark H Weaver ca3f9952d7 gnu: ffmpeg: Update to 2.8.5. 
* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
 2016-01-15 18:20:21 -05:00
Mark H Weaver 8d9bae4ed7 gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558]. 
* gnu/packages/patches/librsvg-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.13.
  [source]: Remove patch.
 2016-01-15 18:03:02 -05:00
Leo Famulari 78e6c4a862 gnu: Add khal. 
* gnu/packages/calendar.scm (khal): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari b97c1bfd56 gnu: python-urwid: Disable failing test test_remove_watch_file. 
* gnu/packages/python.scm (python-urwid)[arguments]: Add
'disable-failing-test' phase.
[source]: Use pypi-uri.
 2016-01-15 16:45:24 -05:00
Leo Famulari 226d333103 gnu: Update python-tzlocal to 1.2. 
* gnu/packages/python.scm (python-tzlocal): Update to 1.2.
[source]: Use pypi-uri.
[arguments]: Remove the custom 'unpack phase.
[native-inputs]: Remove unzip, python-setuptools.
[propagated-inputs]: Add python-pytz.
 2016-01-15 16:45:24 -05:00
Leo Famulari 6bbbb53eeb gnu: Add python-sphinxcontrib-newsfeed. 
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari 5c299bf016 gnu: Add python-icalendar. 
* gnu/packages/python.scm (python-icalendar): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari a2f6a3d502 gnu: Add vdirsyncer. 
* gnu/packages/dav.scm (vdirsyncer): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari f75bbb028a gnu: Add radicale. 
* gnu/packages/dav.scm (radicale): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2016-01-15 16:45:24 -05:00
Leo Famulari 89b8a5516f gnu: Add python-pytest-xprocess. 
* gnu/packages/python.scm (python-pytest-xprocess): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari 28cecbb7cc gnu: Add python-wsgi-intercept. 
* gnu/packages/python.scm (python-wsgi-intercept): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari d7e729fe08 gnu: Add python-pytest-localserver. 
* gnu/packages/python.scm (python-pytest-localserver): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari 6720dbb49f gnu: Add python-pytest-cache. 
* gnu/packages/python.scm (python-pytest-cache): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari 848964fe11 gnu: Add python-execnet. 
* gnu/packages/python.scm (python-execnet): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari 7b3a4ee4c3 gnu: Add python-apipkg. 
* gnu/packages/python.scm (python-apipkg): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari 7b17cab902 gnu: Add python-click-log. 
* gnu/packages/python.scm (python-click-log): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari d1deb90b3f gnu: Add python-click-threading. 
* gnu/packages/python.scm (python-click-threading): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari 561bb3cb1a gnu: Add python-requests-toolbelt. 
* gnu/packages/python.scm (python-requests-toolbelt): New variable.
 2016-01-15 16:45:24 -05:00
Leo Famulari 5c6eea2ad1 gnu: Add python-atomicwrites. 
* gnu/packages/python.scm (python-atomicwrites): New variable.
 2016-01-15 16:45:24 -05:00
Ricardo Wurmus f5ca44b86e gnu: glade: Update to 3.18.5. 
* gnu/packages/gnome.scm (glade): Update to 3.18.5.
[arguments]: Disable tests; add "fix-docbook" phase.
[inputs]: Replace "gtk+-2" with "gtk+".
[native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl";
replace "python" with "python-2".
 2016-01-15 22:29:37 +01:00
Ludovic Courtès 89b48232f8 gnu: automake: Adjust to deal with Perl 5.22. 
Fixes <http://bugs.gnu.org/22375>.

* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-15 14:23:46 +01:00
Mark H Weaver 45f2ffb48c gnu: openssh: Update to 7.1p2. 
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
 2016-01-15 02:46:12 -05:00
Mark H Weaver 1beec63ac8 Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]." 
This reverts commit 6d139e53b5.
 2016-01-15 02:45:58 -05:00
Mark H Weaver 6d139e53b5 gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]. 
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
 2016-01-14 10:39:00 -05:00
David Thompson df1f1d6936 gnu: Add docker-compose. 
* gnu/packages/docker.scm (docker-compose): New variable.
 2016-01-14 09:17:12 -05:00
David Thompson b42c9c8124 gnu: Add python-dockerpty. 
* gnu/packages/docker.scm (python-dockerpty): New variable.
 2016-01-14 09:16:22 -05:00
David Thompson d020bfc2df gnu: Add python-docker-py. 
* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
 2016-01-14 09:16:22 -05:00
David Thompson 67c52bb3e7 gnu: Add python-websocket-client. 
* gnu/packages/python.scm (python-websocket-client): New variable.
 2016-01-14 09:12:23 -05:00
David Thompson 210bf49754 gnu: Add python-texttable. 
* gnu/packages/python.scm (python-texttable, python2-texttable): New
variables.
 2016-01-14 09:12:23 -05:00
David Thompson b3667afbd2 gnu: Update python-jsonschema to 2.5.1. 
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1.
[inputs]: Add python-vcversioner.
 2016-01-14 09:12:06 -05:00
David Thompson ea521b42c2 gnu: Add python-vcversioner. 
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New
variables.
 2016-01-14 09:05:19 -05:00
David Thompson e90051808b gnu: Add version 2.7 variant of python-requests. 
* gnu/packages/python.scm (python-requests-2.7): New variable.
 2016-01-14 09:05:19 -05:00
Ricardo Wurmus 3141b83d4d gnu: r-go-db: Add missing input. 
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add
  "r-annotationdbi".
 2016-01-14 14:43:59 +01:00
Ricardo Wurmus d7786ce9b0 gnu: r-sparsem: Add missing "gfortran" input. 
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
 2016-01-14 14:43:59 +01:00
Ricardo Wurmus 0047d26a22 gnu: bowtie: Update to 2.2.6. 
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
 2016-01-14 14:43:25 +01:00
Efraim Flashner 2d12284d38 gnu: gnupg: Add TOFU support. 
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
 2016-01-14 15:05:36 +02:00
Ludovic Courtès 76002e54f2 gnu: gawk: Protect against random failures of the 'fts' test. 
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-14 10:43:08 +01:00
Ben Woodcroft 6b6f7d6a0e gnu: orfm: Update to 0.5.3. 
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
 2016-01-14 08:00:10 +10:00
Ben Woodcroft 3d84a99e73 gnu: Add ruby-bio-commandeer. 
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
 2016-01-14 08:00:02 +10:00