Commit Graph

28269 Commits (3ff7232ae724a82a774680fa05598685181dec97)

Author SHA1 Message Date
Tobias Geerinckx-Rice 6d7ca74ba6
gnu: 389-ds-base: Fix build.
* gnu/packages/openldap.scm (389-ds-base)[inputs]: Add openssl.
2018-09-25 11:46:54 +02:00
Tobias Geerinckx-Rice 238d950b79
gnu: python-nose-timer: Update to 0.7.3.
* gnu/packages/check.scm (python-nose-timer): Update to 0.7.3.
2018-09-25 11:46:08 +02:00
Tobias Geerinckx-Rice d6ab1d0ac3
gnu: python-flask-login: Update to 0.4.1.
* gnu/packages/python-web.scm (python-flask-login): Update to 0.4.1.
[arguments]: Run the test suite.
[propagated-inputs]: Add python-flask.
[native-inputs]: Add test dependencies.
2018-09-25 11:46:08 +02:00
Tobias Geerinckx-Rice bbc69023d8
gnu: Add python-semantic-version.
* gnu/packages/python.scm (python-semantic-version)
(python2-semantic-version): New public variables.
2018-09-25 11:46:08 +02:00
Tobias Geerinckx-Rice 79374801d0
gnu: python-flask-login: Don't use unstable tarball.
* gnu/packages/python-web.scm (python-flask-login)[source]:
Use GIT-FETCH and GIT-FILE-NAME.
2018-09-25 11:46:08 +02:00
Ricardo Wurmus 932839ff12
gnu: ibus: Update to 1.5.19.
* gnu/packages/ibus.scm (ibus): Update to 1.5.19.
[arguments]: Add configure flags to disable Python 2 support while building
Python 3 bindings; adjust make flags; add phase prepare-ucd-dir.
[inputs]: Replace python2-pygobject with python-pygobject; replace python-2
with python.
[native-inputs]: Add unicode files.
2018-09-25 11:20:32 +02:00
Ricardo Wurmus f1ea0759f4
gnu: qjackctl: Update to 0.5.4.
* gnu/packages/audio.scm (qjackctl): Update to 0.5.4.
2018-09-25 08:18:51 +02:00
Kei Kebreau 116af86f14
gnu: octave: Add a search path for CURLOPT_CAPATH.
* gnu/packages/maths.scm (octave)[native-search-paths]: New field.
2018-09-24 21:42:12 -04:00
Tobias Geerinckx-Rice a68b451423
gnu: Add gandi.cli.
* gnu/packages/networking.scm (gandi.cli): New public variable.
2018-09-24 18:10:48 +02:00
Tobias Geerinckx-Rice e6dcf9ca5f
gnu: rename: Update to 1.00.
* gnu/packages/admin.scm (rename): Update to 1.00.
[arguments]: Wrap executable to find its own library.
2018-09-24 18:10:48 +02:00
Tobias Geerinckx-Rice 4cb4af797a
gnu: lxterminal: Update to 0.3.2.
* gnu/packages/lxde.scm (lxterminal): Update to 0.3.2.
2018-09-24 18:10:48 +02:00
Tobias Geerinckx-Rice 25ab91c85c
gnu: gloox: Update to 1.0.21.
* gnu/packages/messaging.scm (gloox): Update to 1.0.21.
2018-09-24 18:10:47 +02:00
Tobias Geerinckx-Rice b44a18c8f2
gnu: libmesode: Update to 0.9.2.
* gnu/packages/messaging.scm (libmesode): Update to 0.9.2.
2018-09-24 18:10:47 +02:00
Tobias Geerinckx-Rice c60d5a2528
gnu: libmesode: Don't use unstable tarball.
* gnu/packages/messaging.scm (libmesode)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-24 18:10:47 +02:00
Tobias Geerinckx-Rice 8ae540a2c0
gnu: ocaml-ssl: Don't use unstable tarball.
* gnu/packages/ocaml.scm (ocaml-ssl)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-24 18:10:46 +02:00
Ricardo Wurmus 000147811b
gnu: eolie: Update to 0.9.37.
* gnu/packages/gnome.scm (eolie): Update to 0.9.37.
[source]: Fetch from gitlab.
[build-system]: Use meson-build-system.
[arguments]: Remove custom phases; set #:glib-or-gtk?.
[native-inputs]: Remove meson-for-build and ninja; add glib:bin.
[inputs]: Add python-pyfxa and python-pycrypto.
2018-09-24 16:21:11 +02:00
Ricardo Wurmus f45bb3cc0f
gnu: Add python-pyfxa.
* gnu/packages/python-web.scm (python-pyfxa): New variable.
2018-09-24 16:20:51 +02:00
Ricardo Wurmus 084e14cc37
gnu: Add python-pybrowserid.
* gnu/packages/python-web.scm (python-pybrowserid): New variable.
2018-09-24 16:20:42 +02:00
Ricardo Wurmus 0750f344ec
gnu: Add python-hawkauthlib.
* gnu/packages/python-web.scm (python-hawkauthlib): New variable.
2018-09-24 16:20:32 +02:00
Ricardo Wurmus d08b325843
gnu: Add python-grequests.
* gnu/packages/python-web.scm (python-grequests): New variable.
2018-09-24 16:20:19 +02:00
Arun Isaac 53c64d7c93
gnu: m17n-lib: Update to 1.8.0.
* gnu/packages/emacs.scm (m17n-lib): Update to 1.8.0.
2018-09-24 17:46:47 +05:30
Arun Isaac 94282358fd
gnu: m17n-db: Update to 1.8.0.
* gnu/packages/emacs.scm (m17n-db): Update to 1.8.0.
2018-09-24 17:46:18 +05:30
Ricardo Wurmus e72702475d
gnu: Add r-bseqsc.
* gnu/packages/bioinformatics.scm (r-bseqsc): New variable.
2018-09-24 13:31:20 +02:00
Ricardo Wurmus 28829c040f
gnu: Add r-cssam.
* gnu/packages/bioinformatics.scm (r-cssam): New variable.
2018-09-24 13:31:20 +02:00
Ricardo Wurmus a434730f2e
gnu: Add r-xbioc.
* gnu/packages/bioinformatics.scm (r-xbioc): New variable.
2018-09-24 13:31:20 +02:00
Pierre Neidhardt 5c8031ff73
gnu: Prefix all Emacs packages with "emacs-".
* gnu/packages/emacs.scm: Prefix all Emacs packages with "emacs-".
This is to enforce consistency and so that `emacs-packages?' can reliably
detect Emacs packages based on the "emacs-" prefix.
2018-09-24 12:56:04 +02:00
Tobias Geerinckx-Rice cd8aa06093
gnu: python-networkx: Use HTTPS home page.
* gnu/packages/python.scm (python-networkx)[home-page]: Use HTTPS.
2018-09-24 00:34:03 +02:00
Tobias Geerinckx-Rice dd29bd4ebc
gnu: python-networkx: Update to 2.2.
* gnu/packages/python.scm (python-networkx): Update to 2.2.
2018-09-24 00:34:02 +02:00
Tobias Geerinckx-Rice 68cbec027e
gnu: python-decorator: Update to 4.3.0.
* gnu/packages/python.scm (python-decorator): Update to 4.3.0.
[arguments]: Run the test suite.
2018-09-24 00:34:02 +02:00
Tobias Geerinckx-Rice 3715e79ec8
gnu: python-marshmallow: Update to 3.0.0b14.
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b14.
2018-09-24 00:34:01 +02:00
Tobias Geerinckx-Rice a42b68480b
gnu: libiptcdata: Update to 1.0.5.
* gnu/packages/image.scm (libiptcdata): Update to 1.0.5.
[home-page]: Follow Debian's maintained upstream.
2018-09-24 00:34:01 +02:00
Tobias Geerinckx-Rice c30fd002c8
gnu: virtualgl: Update to 2.6.
* gnu/packages/gl.scm (virtualgl): Update to 2.6.
[inputs]: Add libxtst.
2018-09-24 00:34:01 +02:00
Tobias Geerinckx-Rice 2c36baa56f
gnu: parallel: Update to 20180922.
* gnu/packages/parallel.scm (parallel): Update to 20180922.
2018-09-24 00:34:00 +02:00
Tobias Geerinckx-Rice 2f7ad2a788
gnu: workrave: Use Guix's built-in bootstrap phase.
* gnu/packages/gnome.scm (workrave)[arguments]: Remove
'autoconf' phase.
2018-09-24 00:34:00 +02:00
Tobias Geerinckx-Rice 899e1974a6
gnu: python-gitdb: Update to 2.0.4.
* gnu/packages/version-control.scm (python-gitdb): Update to 2.0.4.
[arguments]: Replace AND with equivalent but more 'accurate' BEGIN.
2018-09-24 00:34:00 +02:00
Tobias Geerinckx-Rice 0604d3cfce
gnu: nano: Update to 3.1.
* gnu/packages/nano.scm (nano): Update to 3.1.
2018-09-24 00:33:59 +02:00
Tobias Geerinckx-Rice 25706b8fc9
gnu: fping: Use HTTPS home page.
* gnu/packages/networking.scm (fping)[home-page]: Use HTTPS.
2018-09-24 00:33:59 +02:00
Tobias Geerinckx-Rice 8fa361ce63
gnu: fping: Update to 4.1.
* gnu/packages/networking.scm (fping): Update to 4.1.
2018-09-24 00:33:59 +02:00
Pierre Neidhardt e10bf49668
gnu: Add emacs-synosaurus.
* gnu/packages/emacs.scm (emacs-synosaurus): New variable.
2018-09-23 17:19:56 +02:00
Rutger Helling 94676ded5f
gnu: xpra: Update to 2.3.4.
* gnu/packages/xorg.scm (xpra): Update to 2.3.4.
2018-09-23 13:15:38 +02:00
Mark H Weaver 84b334362e
gnu: eolie: Use webkitgtk-2.22.
* gnu/packages/gnome.scm (eolie)[native-inputs]: Add gcc-7:lib.
[inputs]: Replace webkitgtk with webkitgtk-2.22.
[arguments]: Add "gcc:lib" to the list of libraries to add to
LD_LIBRARY_PATH.  Use invoke.
2018-09-23 04:55:54 -04:00
Mark H Weaver 480d39a600
gnu: epiphany: Use webkitgtk-2.22.
* gnu/packages/gnome.scm (epiphany)[native-inputs]: Add gcc-7.
[inputs]: Replace webkitgtk with webkitgtk-2.22.
2018-09-23 01:25:21 -04:00
Mark H Weaver 844cc6f876
gnu: webkitgtk: Add version 2.22.2.
* gnu/packages/webkit.scm (webkitgtk-2.22): New variable.
2018-09-23 01:25:09 -04:00
Katherine Cox-Buday 21280a8cd8
gnu: Add Go 1.11.
* gnu/packages/golang.scm (go-1.11): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-22 14:30:13 -04:00
Mark H Weaver ae71cd8ac9
gnu: icecat: Add fixes from upstream mozilla-esr60 [security fixes].
Includes fixes for CVE-2018-12383 and CVE-2018-12385.

* gnu/packages/patches/icecat-CVE-2018-12383.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Adapt to apply
cleanly to IceCat 60.
* gnu/packages/gnuzilla.scm (mozilla-patch): Update to fetch from
mozilla-esr60.
(icecat): Add selected changesets from upstream mozilla-esr60.
2018-09-22 13:48:32 -04:00
Danny Milosavljevic 91294b5361
Revert 'gnu: rust: Remove unused "ar" setting.'.
Some versions of Rust do need it and others complain about it.
For now, revert the removal entirely.

This reverts commit ec944a1de9.
2018-09-22 10:09:47 +02:00
Ben Woodcroft 05fb1e0017
gnu: hmmer: Update to 3.2.1.
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1.
[origin]: Remove patch.
[license]: Change to BSD-3.
[supported-systems]: New field.
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-22 09:16:47 +10:00
Nicolas Goaziou 78b7b9dbe9
gnu: snap: Update to 4.2.1.4.
* gnu/packages/education.scm (snap): Update to 4.2.1.4.
2018-09-21 22:22:09 +02:00
Nicolas Goaziou a255142af3
gnu: emacs-org: Update to 9.1.14.
* gnu/packages/emacs.scm (emacs-org): Update to 9.1.14.
2018-09-21 21:55:28 +02:00
Tobias Geerinckx-Rice 1302837f6b
gnu: workrave: Update to 1.10.21.
* gnu/packages/gnome.scm (workrave): Update to 1.10.21.
[source]: Use GIT-FILE-NAME.
2018-09-21 20:32:27 +02:00
Tobias Geerinckx-Rice 43726c522f
gnu: emacs-password-store: Update to 1.7.3.
* gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.3.
2018-09-21 20:32:27 +02:00
Tobias Geerinckx-Rice 10fadd1e3d
gnu: filezilla: Update to 3.37.1.
* gnu/packages/ftp.scm (filezilla): Update to 3.37.1.
2018-09-21 19:52:27 +02:00
Tobias Geerinckx-Rice 9a32bdf8a9
gnu: wxwidgets: Update to 3.0.4.
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.4.
2018-09-21 19:52:26 +02:00
Tobias Geerinckx-Rice 199d72e327
gnu: python-pyparsing: Update to 2.2.1.
* gnu/packages/python.scm (python-pyparsing): Update to 2.2.1.
[source]: Use PYPI-URI.
2018-09-21 19:52:26 +02:00
Danny Milosavljevic ec944a1de9
gnu: rust: Remove unused "ar" setting.
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove
unused "ar" setting.
2018-09-21 17:59:09 +02:00
pimi 7e27393f82
gnu: Add r-pore.
* gnu/packages/bioinformatics.scm (r-pore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-21 17:04:37 +02:00
Paul Garlick 45201bf245
gnu: hdf5-parallel-openmpi: Really enable parallel build.
This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set
in the file H5pubconf.h.

* gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add
the "--enable-parallel" flag to the list of configure flags.  Remove
the incompatible "--enable-cxx" flag.  Add 'mpi-setup' phase.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-21 17:04:37 +02:00
Paul Garlick b0d1e60fff
gnu: hdf5: Allow for absence of utility script.
* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split'
phase to check for existence of h5fc script.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-21 17:04:37 +02:00
Danny Milosavljevic 10e066f410
gnu: rust: Remove unused "localstatedir" setting.
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove
unused "localstatedir" setting.
2018-09-21 15:21:24 +02:00
Tobias Geerinckx-Rice 118a084531
gnu: libfilezilla: Update to 0.13.2.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.2.
[source]: Use HTTPS.
2018-09-21 15:04:29 +02:00
Tobias Geerinckx-Rice 41e551b2d3
gnu: python-pyparsing: Update home page.
* gnu/packages/python.scm (python-pyparsing)[home-page]: Update.
2018-09-21 15:03:49 +02:00
Tobias Geerinckx-Rice eacb5dc487
gnu: emacs-mu4e-conversation: Fix typo in description.
* gnu/packages/emacs.scm (emacs-mu4e-conversation)[description]:
Fix 'correspondant' typo.
2018-09-21 15:03:49 +02:00
Tobias Geerinckx-Rice 93ab9a5d76
gnu: kodi: Use INVOKE.
* gnu/packages/kodi.scm (kodi)[arguments]: Substitute INVOKE for SYSTEM*.
2018-09-21 15:03:48 +02:00
Tobias Geerinckx-Rice 2aa137e261
gnu: crossguid: Use INVOKE.
* gnu/packages/kodi.scm (crossguid)[arguments]: Substitute INVOKE for SYSTEM*.
2018-09-21 15:03:48 +02:00
Mark H Weaver e67ad5532f
gnu: icecat: Update to 60.2.0-gnu1 (pre-release).
* gnu/packages/gnuzilla.scm (icecat): Update to 60.2.0-gnu1.
[source]: Download pre-release from alpha.gnu.org.  Remove obsolete patches.
Comment out the code to delete the bundled copies of libevent, cairo,
harfbuzz, and graphite2.
[inputs]: Use the latest ffmpeg.  Comment out libevent, cairo, harfbuzz, and
graphite2.
[native-inputs]: Add rust and cargo.
[arguments]: Remove --enable-gio and --disable-gnomeui.  Add --disable-stylo.
Comment out --with-system-{libevent,harfbuzz,graphite2}, --enable-system-cairo.
Import %cargo-build-system-modules.  Add 'patch-cargo-checksums' phase.
* gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch,
gnu/packages/patches/icecat-bug-1413868-pt1.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-09-21 07:16:02 -04:00
Mark H Weaver c5327efb97
gnu: libvpx: Add upstream security fix.
* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (libvpx)[source]: Add patch.
2018-09-21 07:15:59 -04:00
Tobias Geerinckx-Rice 6569549dfa
gnu: python-paramiko: Update to 2.4.2 [security fixes].
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.4.2.
2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice 101ad242be
gnu: python-paramiko: Use HTTPS home page.
* gnu/packages/python-crypto.scm (python-paramiko)[home-page]: Use HTTPS.
2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice a1d6610e84
gnu: python-rencode: Update to 1.0.5.
* gnu/packages/python.scm (python-rencode): Update to 1.0.5.
[arguments]: Add a 'delete-bogus-test' phase.
2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice e36058634d
gnu: python-hdf4: Use INVOKE.
* gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice 6f05556ba7
gnu: s6: Update to 2.7.2.1.
* gnu/packages/skarnet.scm (s6): Update to 2.7.2.1.
2018-09-21 13:18:41 +02:00
Tobias Geerinckx-Rice 174988fa05
gnu: perl-xml-compile: Update to 1.60.
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.60.
[propagated-inputs]: Add perl-carp, perl-scalar-list-utils, and
perl-types-serialiser.
2018-09-21 13:18:41 +02:00
Nicolas Goaziou 1df40d3dbf
gnu: emacs-orgalist: Update to 1.9.
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.9.
2018-09-21 11:52:12 +02:00
Tobias Geerinckx-Rice 3752b683dc
gnu: openscenegraph: Update to 3.6.3.
* gnu/packages/graphics.scm (openscenegraph): Update to 3.6.3.
[source]: Use GIT-FILE-NAME.
[inputs]: Remove unused pth and qtbase.
2018-09-21 10:25:33 +02:00
Tobias Geerinckx-Rice 29ddbc5607
gnu: python-pydot: Update to 1.2.4.
* gnu/packages/graphviz.scm (python-pydot): Update to 1.2.4.
[arguments]: Run the test suite.
[native-inputs]: Add python-chardet.
2018-09-21 10:25:32 +02:00
Tobias Geerinckx-Rice 1779aaa09a
Add 'GNU Guix' comment to all (gnu packages) headers.
* gnu/packages/debian.scm, gnu/packages/syndication.scm: Add comments.
2018-09-21 10:25:32 +02:00
Tobias Geerinckx-Rice 4aa64e3a81
gnu: ubuntu-keyring: Update to 2018.09.18.1.
* gnu/packages/debian.scm (ubuntu-keyring): Update to 2018.09.18.1.
2018-09-21 10:25:32 +02:00
Tobias Geerinckx-Rice eeecbe09cc
gnu: perl-dbd-mysql: Update to 4.048.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
2018-09-21 10:25:31 +02:00
Danny Milosavljevic e0b07ccc1a
gnu: rust: Work around mtime bug in rust build helpers.
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[fix-mtime-bug]:
Delete.
[reset-timestamps-after-changes]: Modify.
(rust-1.24): Don't delete "fix-mtime-bug" since now it doesn't ever
get created.
2018-09-21 01:35:00 +02:00
Danny Milosavljevic 1bfaae25fa
gnu: rust@1.20.0: Fix tests.
* gnu/packages/rust.scm (rust-1.23)[arguments]<#:phases>
[patch-cargo-tests, ignore-glibc-2.27-incompatible-test,fix-mtime-bug]: Move
to...
(rust-1.20): ... here.
2018-09-21 01:31:10 +02:00
Mark H Weaver 83e8b1d794
gnu: linux-libre: Update to 4.18.9.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.9.
(%linux-libre-hash): Update hash.
2018-09-20 18:04:56 -04:00
Mark H Weaver c57a2a12b1
gnu: linux-libre@4.14: Update to 4.14.71.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.71.
(%linux-libre-4.14-hash): Update hash.
2018-09-20 18:04:48 -04:00
Mark H Weaver 41d6afb266
gnu: linux-libre@4.9: Update to 4.9.128.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.128.
2018-09-20 18:04:42 -04:00
Mark H Weaver c6ede267e6
gnu: linux-libre@4.4: Update to 4.4.157.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.157.
2018-09-20 18:04:35 -04:00
fis trivial ea2364621a
gnu: qbittorrent: Update to 4.1.3.
* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.1.3.
[inputs]: Use python-wrapper instead of python.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-20 15:31:17 -04:00
fis trivial f5c10a94ef
gnu: gprolog: Update to 1.4.5.
* gnu/packages/gprolog.scm (gprolog): Update to 1.4.5.
[source]: Add an alternate source URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-20 15:27:43 -04:00
Ricardo Wurmus 89ee8a6edf
gnu: rsem: Update to 1.3.1.
* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1.
[source]: Fetch from git; remove patch; delete bundled samtools.
[arguments]: Pass make flags; adjust phases.
[inputs]: Remove ncurses and samtools-0.1; add htslib-1.3.
* gnu/packages/patches/rsem-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-20 17:55:26 +02:00
Ricardo Wurmus a235ea4f30
gnu: ghc-pandoc-citeproc: Update to 0.14.3.1.
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.14.3.1.
2018-09-20 17:20:07 +02:00
Ricardo Wurmus e30397dddb
gnu: ghc-xml-conduit: Update to 1.8.0.1.
* gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.8.0.1.
[inputs]: Add ghc-doctest.
2018-09-20 17:20:02 +02:00
Ricardo Wurmus 391fc11f0e
gnu: python2-scikit-learn: Fix check phase.
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]:
Override check phase to disable broken tests and pass environment variables.
2018-09-20 15:56:59 +02:00
Ricardo Wurmus 26358ac5ab
gnu: Add r-parmigene.
* gnu/packages/cran.scm (r-parmigene): New variable.
2018-09-20 15:56:30 +02:00
Marius Bakke 3e12df7d71
gnu: Add emacs-dired-sidebar.
* gnu/packages/emacs.scm (emacs-dired-sidebar): New public variable.
2018-09-20 13:29:29 +02:00
Marius Bakke 166b2c970e
gnu: eolie: Update home page.
* gnu/packages/gnome.scm (eolie)[home-page]: Set to wiki.gnome.org/Apps/Eolie.
2018-09-20 13:29:29 +02:00
Tobias Geerinckx-Rice 3e63a83c0f
gnu: u-boot: Use HTTPS home page.
* gnu/packages/bootloaders.scm (u-boot)[home-page]: Use HTTPS.
2018-09-20 04:50:34 +02:00
Tobias Geerinckx-Rice 84c7fbfd6d
gnu: ccid: Update to 1.4.30.
* gnu/packages/security-token.scm (ccid): Update to 1.4.30.
2018-09-20 04:50:34 +02:00
Tobias Geerinckx-Rice 4eb161962f
gnu: opusfile: Update to 0.11.
* gnu/packages/xiph.scm (opusfile): Update to 0.11.
2018-09-20 04:50:33 +02:00
Tobias Geerinckx-Rice e61c2991e4
Use INVOKE in (gnu packages xdisorg).
* gnu/packages/xdisorg.scm (scrot, unclutter, xautolock, nxbelld)
[arguments]: Use INVOKE.
2018-09-20 04:17:04 +02:00
Tobias Geerinckx-Rice 2385ecb224
Use INVOKE in (gnu packages shells).
* gnu/packages/shells.scm (mksh)[arguments]: Use INVOKE...
(scsh)[arguments]: ...and also return #t from all phases.
2018-09-20 04:17:04 +02:00
Tobias Geerinckx-Rice 9923d5a40f
gnu: Use INVOKE & return #t from Ruby package phases.
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from
all phases.
* gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute
INVOKE for SYSTEM*.
* gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate)
(ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins)
(ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure)
(ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard)
(ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers)
(ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer)
(ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery)
(ruby-rc4, ruby-concurrent)[arguments]: Likewise.
2018-09-20 04:17:04 +02:00
Tobias Geerinckx-Rice 4f66ae2899
gnu: ruby-heredoc-unindent: Fix typo in description.
* gnu/packages/ruby.scm (ruby-heredoc-unindent)[description]: Fix typo.
2018-09-20 04:17:03 +02:00
Tobias Geerinckx-Rice 7616d75fd6
Use INVOKE in (gnu packages telephony).
* gnu/packages/telephony.scm (libiax2, mumble)[arguments]: Use INVOKE.
2018-09-20 04:17:03 +02:00
Tobias Geerinckx-Rice e564d33ce8
gnu: gourmet: Use HTTPS home page.
* gnu/packages/nutrition.scm (gourmet)[home-page]: Use HTTPS.
2018-09-20 04:17:03 +02:00
Tobias Geerinckx-Rice 29a000b602
gnu: sg3-utils: Update to 1.44.
* gnu/packages/scsi.scm (sg3-utils): Update to 1.44.
2018-09-20 04:17:02 +02:00
Leo Famulari e266043e67
gnu: shotwell: Update to 0.28.4.
* gnu/packages/gnome.scm (shotwell): Update to 0.28.4.
2018-09-19 17:31:49 -04:00
Leo Famulari 508d5c5fa8
gnu: OpenSC: Update to 0.19.0 [security fixes].
Fixes CVE-2018-{16391,16392,16393,16418,16419,16420,16421,16422,16423,16424,
16425,16426,16427}.

* gnu/packages/security-token.scm (opensc): Update to 0.19.0.
2018-09-19 15:08:00 -04:00
Andy Patterson 1d98b44ea6
gnu: sbcl-slynk: Fix the build.
* gnu/packages/lisp.scm (sbcl-slynk-boot0): Update to commit
cbf84c36c4eca8b032e3fd16177a7bc02df3ec4c.
[origin]<snippet>: Replace slynk/util references with the built system name
slynk-util. Remove compile-time invocations of slynk-require.
(sbcl-slynk-util): Inherit from sbcl-slynk-boot0.
[inputs]: Add sbcl-slynk-boot0.
[arguments]: Set an appropriate asd-file and asd-system-name.
(sbcl-slynk-arglists)[arguments]: Set an appropriate asdf-system-name.
(sbcl-slynk-fancy-inspector)[arguments]: Likewise.
(sbcl-slynk-package-fu)[arguments]: Likewise.
(sbcl-slynk-mrepl)[arguments]: Likewise.
(sbcl-slynk-trace-dialog)[arguments]: Likewise.
(sbcl-slynk-profiler)[arguments]: Likewise.
(sbcl-slynk-indentation)[arguments]: Likewise.
(sbcl-slynk-retro)[arguments]: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19 18:25:28 +02:00
Marius Bakke 4d679255da
gnu: glm: Update to 0.9.9.2.
* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
2018-09-19 15:20:21 +02:00
Marius Bakke f6ae59c2e0
gnu: feh: Update to 2.28.
* gnu/packages/image-viewers.scm (feh): Update to 2.28.
2018-09-19 15:20:21 +02:00
Marius Bakke f03c4ec649
gnu: arpack-ng: Update to 3.6.3.
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
2018-09-19 15:20:21 +02:00
Marius Bakke 622ef2b90a
gnu: arpack-ng: Don't use unstable tarball.
* gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
2018-09-19 15:20:21 +02:00
Marius Bakke c5c1e410cf
gnu: Reinstate xf86-video-ast.
* gnu/packages/patches/xf86-video-ast-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-ast): New public variable.
2018-09-19 15:20:21 +02:00
Danny Milosavljevic 6c1a658414
gnu: rust@1.19.0: Install libtest.
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Build
libtest.
2018-09-19 14:41:01 +02:00
Danny Milosavljevic 4a90fcf9e7
gnu: mrustc: Enable tests.
* gnu/packages/rust.scm (mrustc)[arguments]: Add #:test-target.
<#:phases>[install]: Don't install test output.
2018-09-19 14:41:01 +02:00
Pierre Neidhardt 1cfcb841ed
gnu: git-credential-netrc: Add Git.pm to PERL5LIB.
* gnu/packages/version-control.scm (git)[credential-netrc]: Add Git.pm to PERL5LIB.
2018-09-19 09:07:12 +02:00
Ludovic Courtès 0058888c7e
gnu: Add guile-debbugs.
* gnu/packages/guile.scm (guile-debbugs): New variable.
2018-09-18 23:23:44 +02:00
Leo Famulari 32b3611375
gnu: Go 1.10: Update to 1.10.4.
* gnu/packages/golang.scm (go-1.10): Update to 1.10.4.
2018-09-18 15:30:03 -04:00
Tobias Geerinckx-Rice 56c180750c
gnu: busybox: Update to 1.29.3.
* gnu/packages/busybox.scm (busybox): Update to 1.29.3.
2018-09-18 14:18:43 +02:00
Tobias Geerinckx-Rice d99051715a
gnu: xorriso: Update to 1.5.0.
* gnu/packages/cdrom.scm (xorriso): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
Tobias Geerinckx-Rice 8190578fa0
gnu: libisofs: Update to 1.5.0.
* gnu/packages/cdrom.scm (libisofs): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
Tobias Geerinckx-Rice 4999f45ea9
gnu: libburn: Update to 1.5.0.
* gnu/packages/cdrom.scm (libburn): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
Tobias Geerinckx-Rice 487cf5aaf6
gnu: rc: Simplify.
* gnu/packages/shells.scm (rc)[source]: Replace magic commit ID with the
tagged release. Use GIT-FILE-NAME.
[arguments]: Remove 'autoreconf' phase (relying on Guix's built-in
'bootstrap' phase instead) and adjust the ordering of 'patch-trip.rc'
accordingly.
2018-09-18 13:50:09 +02:00
Tobias Geerinckx-Rice 7c0ed27a8b
gnu: ncmpc: Update to 0.30.
* gnu/packages/mpd.scm (ncmpc): Update to 0.30.
[arguments]: Add 'expand-C++-include-path' phase.
[inputs]: Add gcc-8.
2018-09-18 13:50:09 +02:00
Tobias Geerinckx-Rice 8ecd843df5
gnu: exfat-utils: Update to 1.3.0.
* gnu/packages/mtools.scm (exfat-utils): Update to 1.3.0.
2018-09-18 13:50:09 +02:00
Tobias Geerinckx-Rice b22c44f1ea
gnu: cinnamon-desktop: Use Guix's built-in bootstrap phase.
* gnu/packages/cinnamon.scm (cinnamon-desktop)[arguments]: Remove
'autoconf' phase. Add 'skip-premature-configure' phase.
2018-09-18 13:49:23 +02:00
Tobias Geerinckx-Rice 0edc232be9
gnu: gourmet: Use INVOKE.
* gnu/packages/nutrition.scm (gourmet)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-09-18 13:49:23 +02:00
Ludovic Courtès 56c240ba8c
gnu: Add confusion-mdl.
* gnu/packages/lisp.scm (confusion-mdl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-17 23:19:45 +02:00
Tobias Geerinckx-Rice d68aa41573
gnu: enlightenment: Update to 0.22.4.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.4.
2018-09-17 12:50:21 +02:00
Tobias Geerinckx-Rice ee127549a3
gnu: efl: Update to 1.21.1.
* gnu/packages/enlightenment.scm (efl): Update to 1.21.1.
2018-09-17 12:50:21 +02:00
Tobias Geerinckx-Rice f6a4d57e06
gnu: foo2zjs: Update to 20180910.
* gnu/packages/cups.scm (foo2zjs): Update to 20180910.
2018-09-17 12:50:21 +02:00
Tobias Geerinckx-Rice a09a21190f
gnu: libiptcdata: Mark up description.
* gnu/packages/image.scm (libiptcdata)[description]: Use @dfn{}.
2018-09-17 12:50:20 +02:00
Tobias Geerinckx-Rice 99d386a71f
gnu: powwow: Update to 1.2.18.
* gnu/packages/games.scm (powwow): Update to 1.2.18.
2018-09-17 12:50:20 +02:00
Tobias Geerinckx-Rice 36aff81aa3
gnu: powwow: Use HTTPS home page.
* gnu/packages/games.scm (powwow)[home-page]: Use HTTPS.
2018-09-17 12:50:20 +02:00
Tobias Geerinckx-Rice 956bcc8ed2
gnu: python-dirsync: Update to 2.2.3.
* gnu/packages/python.scm (python-dirsync): Update to 2.2.3.
[native-inputs]: Remove unzip.
2018-09-17 12:50:20 +02:00
Leo Famulari 4fed15fba3
gnu: mbedtls-apache: Update to 2.7.6.
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.6.
2018-09-17 01:14:15 -04:00
Mark H Weaver ad99df3990
gnu: linux-libre: Update to 4.18.8.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.8.
(%linux-libre-hash): Update hash.
2018-09-16 19:13:42 -04:00
Mark H Weaver c333c8b6f1
gnu: linux-libre@4.14: Update to 4.14.70.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.70.
(%linux-libre-4.14-hash): Update hash.
2018-09-16 19:12:53 -04:00
Mark H Weaver bf9d141a65
gnu: linux-libre@4.9: Update to 4.9.127.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.127.
2018-09-16 19:12:10 -04:00
Mark H Weaver b55d75f133
gnu: linux-libre@4.4: Update to 4.4.156.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.156.
2018-09-16 19:11:33 -04:00
Tobias Geerinckx-Rice 31fdfc0cdd
gnu: dmidecode: Update to 3.2.
* gnu/packages/admin.scm (dmidecode): Update to 3.2.
2018-09-16 23:44:46 +02:00
Ben Woodcroft 5edef88b88
gnu: Add ruby-multi-test.
* gnu/packages/ruby.scm (ruby-multi-test): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-09-16 18:29:45 +01:00
Ben Woodcroft 1b6f5475a1
gnu: Enable tests for ruby-multi-json.
* gnu/packages/ruby.scm (ruby-multi-json)[version]: Update to 1.13.1.
[source]: Switch to GitHub, so that the tests can be run.
[arguments]: Enable running the tests, and add a patch to fix an issue running
the tests.
[native-inputs]: Add native-inputs required for running the tests.
[home-page]: Use HTTPS.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-09-16 18:29:45 +01:00
Ben Woodcroft ed4b6b1840
gnu: Add ruby-oj.
* gnu/packages/ruby.scm (ruby-oj): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-09-16 18:29:45 +01:00
Ben Woodcroft 2db0f9c82d
gnu: Add ruby-yajl-ruby.
* gnu/packages/ruby.scm (ruby-yajl-ruby): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-09-16 18:29:45 +01:00
Roel Janssen cbb1b16865
admin: python-pyudev: Add dependency on python-six.
* gnu/packages/admin.scm (python-pyudev): Add dependency on python-six.
2018-09-15 21:26:50 +02:00
Julien Lepiller 636579210f
gnu: php: Update to 7.2.10.
* gnu/packages/php.scm (php): Update to 7.2.10.
2018-09-15 21:06:08 +02:00
Rutger Helling e8079dd9e4
gnu: wine-staging: Update to 3.16.
* gnu/packages/wine.scm (wine-staging): Update to 3.16.
2018-09-15 15:09:01 +02:00
Rutger Helling b947c614df
gnu: wine-staging-patchset-data: Update to 3.16.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.16.
2018-09-15 15:09:01 +02:00
Rutger Helling 85a349787b
gnu: wine: Update to 3.0.3.
* gnu/packages/wine.scm (wine): Update to 3.0.3.
2018-09-15 15:09:00 +02:00
Tobias Geerinckx-Rice 4be83af427
gnu: gambit-c: Update to 4.9.0.
The tests makefile still contains the offending lines, but I was unable
to reproduce the failure across 3 different machines.

* gnu/packages/scheme.scm (gambit-c): Update to 4.9.0.
[arguments]: Remove 'fix-tests' phase.
2018-09-15 12:15:28 +02:00
Tobias Geerinckx-Rice 4e9832dd38
gnu: gambit-c: Update home page.
* gnu/packages/scheme.scm (gambit-c)[home-page]: Update.
2018-09-15 12:15:05 +02:00
Maxim Cournoyer 511f3be695
gnu: Add python-user-agents.
* gnu/packages/python.scm (python-user-agents, python2-user-agents): New
variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-15 12:19:06 +08:00
Maxim Cournoyer 2ee67781ff
gnu: Add python-ua-parser.
* gnu/packages/python.scm (python-ua-parser, python2-ua-parser): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-15 12:19:06 +08:00
Maxim Cournoyer 935d5ceb9b
gnu: Add python-pycountry.
* gnu/packages/python.scm (python-pycountry, python2-pycountry): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-15 12:19:06 +08:00
Tobias Geerinckx-Rice 021b42f5e7
gnu: zsh: Update to 5.6.2.
* gnu/packages/shells.scm (zsh): Update to 5.6.2.
2018-09-15 05:17:51 +02:00
Tobias Geerinckx-Rice 81fb037f5a
gnu: libetpan: Use HTTPS home page.
* gnu/packages/mail.scm (libetpan)[home-page]: Use HTTPS.
2018-09-15 05:17:50 +02:00
Tobias Geerinckx-Rice 483be9bda6
gnu: ocaml-ounit: Update to 2.0.8.
* gnu/packages/ocaml.scm (ocaml-ounit): Update to 2.0.8.
2018-09-15 05:17:50 +02:00
Tobias Geerinckx-Rice 3319817174
gnu: pybind11: Update to 2.2.4.
* gnu/packages/python.scm (pybind11): Update to 2.2.4.
2018-09-15 05:17:50 +02:00
Tobias Geerinckx-Rice 5c34d97187
gnu: pybind11: Don't use unstable tarball.
* gnu/packages/python.scm (pybind11)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-15 05:17:50 +02:00
Maxim Cournoyer 61853b7447
gnu: libjpeg: Improve description.
* gnu/packages/image.scm (libjpeg)[description]: Add the list of the programs
it provides.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-15 10:49:50 +08:00
Tobias Geerinckx-Rice 25bc6370a4
gnu: snakemake: Update to 5.2.4.
* gnu/packages/python.scm (snakemake): Update to 5.2.4.
[propagated-inputs]: Add python-gitpython.
2018-09-15 03:38:31 +02:00
Tobias Geerinckx-Rice bbe2a94799
gnu: libsigrokdecode: Update to 0.5.2.
* gnu/packages/electronics.scm (libsigrokdecode): Update to 0.5.2.
2018-09-15 03:38:31 +02:00
Tobias Geerinckx-Rice 9f1b186afc
gnu: libetpan: Update to 1.9.1.
* gnu/packages/mail.scm (libetpan): Update to 1.9.1.
2018-09-15 03:38:31 +02:00
Tobias Geerinckx-Rice aae96f8fac
gnu: libetpan: Don't use unstable tarball.
* gnu/packages/mail.scm (libetpan)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-15 03:38:31 +02:00
Tobias Geerinckx-Rice f9fe94c1f6
gnu: emacs-magit-popup: Don't use unstable tarball.
* gnu/packages/emacs.scm (emacs-magit-popup)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-15 03:38:30 +02:00
Tobias Geerinckx-Rice e1bf455cee
gnu: emacs-magit-popup: Update to 2.12.4.
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.4.
2018-09-15 03:38:30 +02:00
Tobias Geerinckx-Rice 49c941b43b
gnu: libmwaw: Update to 0.3.14.
* gnu/packages/libreoffice.scm (libmwaw): Update to 0.3.14.
2018-09-15 03:38:30 +02:00
Tobias Geerinckx-Rice 002d73a01f
gnu: libwps: Update to 0.4.10.
* gnu/packages/libreoffice.scm (libwps): Update to 0.4.10.
2018-09-15 03:38:30 +02:00
Tobias Geerinckx-Rice c924fe38dc
gnu: umoci: Update to 0.4.2.
* gnu/packages/virtualization.scm (umoci): Update to 0.4.2.
2018-09-15 03:36:36 +02:00
Tobias Geerinckx-Rice 56f3b85bd3
gnu: python-iso8601: Update to 0.1.12.
* gnu/packages/time.scm (python-iso8601): Update to 0.1.12.
2018-09-15 03:36:36 +02:00
Tobias Geerinckx-Rice ed017a78be
gnu: coq: Update to 8.8.1.
* gnu/packages/ocaml.scm (coq): Update to 8.8.1.
2018-09-15 03:36:36 +02:00
Tobias Geerinckx-Rice 1d7cc6841e
gnu: coq: INVOKE.
* gnu/packages/ocaml.scm (coq)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-09-15 03:36:35 +02:00
Leo Famulari 9e9e5d5a26
gnu: OpenSSL 1.1: Update to 1.1.1.
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1.
[arguments]: Patch a `/usr/bin/env` invocation in the 'config' script.
Adjust the documentation output.
* gnu/packages/patches/openssl-1.1.0-c-rehash-in.patch: Rename and ...
* gnu/packages/patches/openssl-1.1-c-rehash-in.patch: ... adjust patch.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-09-14 16:51:49 -04:00
Danny Milosavljevic e830c9d0b0
gnu: Rename "banana-pi" to "bananapi".
* gnu/bootloader/u-boot.scm (u-boot-banana-pi-m2-ultra-bootloader): Rename
to...
(u-boot-bananapi-m2-ultra-bootloader): ...this.
* gnu/packages/bootloaders.scm (u-boot-banana-pi-m2-ultra): Rename to...
(u-boot-bananapi-m2-ultra): ...this.
* gnu/system/install.scm (banana-pi-m2-ultra-installation-os): Rename to...
(bananapi-m2-ultra-installation-os): ...this.
2018-09-14 21:31:24 +02:00
Ricardo Wurmus 7a20877a18
gnu: python-llvmlite: Remove obsolete patch.
* gnu/packages/llvm.scm (python-llvmlite)[inputs]: Remove patch that is
obsolete since the upgrade to LLVM 6.0.1.
2018-09-14 15:12:03 +02:00
Eric Brown daa6036fda
gnu: Add openblas-ilp64.
* gnu/packages/maths.scm (openblas-ilp64): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-14 11:23:07 +02:00
Ricardo Wurmus 1dd153b3aa
gnu: Add python-hic2cool.
* gnu/packages/bioinformatics.scm (python-hic2cool): New variable.
2018-09-14 09:15:49 +02:00
pimi 03c95f0414
gnu: Add r-abps.
* gnu/packages/cran.scm (r-abps): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-14 07:46:19 +02:00
pimi 016cabf7be
gnu: Add r-abodoutlier.
* gnu/packages/cran.scm (r-abodoutlier): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-14 07:46:19 +02:00
Danny Milosavljevic 317b139c5d
gnu: rust: Update to 1.27.2.
* gnu/packages/rust.scm (rust): Update to 1.27.2.
2018-09-13 22:37:55 +02:00
pimi b6afe7b7f5
gnu: Add r-abnormality.
* gnu/packages/cran.scm (r-abnormality): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 22:16:01 +02:00
Tobias Geerinckx-Rice f0314f65df
gnu: Add perl-devel-checklib.
* gnu/packages/perl.scm (perl-devel-checklib): New public variable.
2018-09-13 19:53:08 +02:00
Tobias Geerinckx-Rice 7ec4f648e5
gnu: sg3_utils: Mark up description.
* gnu/packages/scsi.scm (sg3_utils)[description]: Use @dfn{}.
Wrap commands in @command{} rather than @code{}, and @itemize them.
2018-09-13 19:53:08 +02:00
Tobias Geerinckx-Rice 581b6f5e96
gnu: sudo: Update to 1.8.25p1.
* gnu/packages/admin.scm (sudo): Update to 1.8.25p1.
2018-09-13 19:53:07 +02:00
Tobias Geerinckx-Rice 0b0b43ed7a
gnu: youtube-viewer: Update to 3.4.1.
* gnu/packages/video.scm (youtube-viewer): Update to 3.4.1.
2018-09-13 19:53:07 +02:00
Tobias Geerinckx-Rice 6be445785a
gnu: youtube-viewer: Don't use unstable tarball.
* gnu/packages/video.scm (youtube-viewer)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-13 19:53:07 +02:00
Leo Famulari 7d1cc61293
Revert "gnu: libinput: Update to 1.12.0."
Libinput-minimal has a lot of dependent packages, and this isn't reported by
`guix refresh --list-dependent`. We'll save this commit for another time.

This reverts commit 38dc3d6f17.
2018-09-13 13:28:10 -04:00
pimi ebb3cdb1ea
gnu: Add r-abjutils.
* gnu/packages/cran.scm (r-abjutils): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 19:18:47 +02:00
pimi 1efcd0f1ea
gnu: Add r-abhgenotyper.
* gnu/packages/cran.scm (r-abhgenotyper): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 19:13:43 +02:00
Manuel Graf ae72b8f55b
gnu: Add ClusterShell.
* gnu/packages/ssh.scm (clustershell): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-13 19:12:25 +02:00
Leo Famulari 38dc3d6f17
gnu: libinput: Update to 1.12.0.
* gnu/packages/freedesktop.scm (libinput): Update to 1.12.0.
2018-09-13 13:08:24 -04:00
pimi ef26400b66
gnu: Add r-abf2.
gnu/packages/cran.scm (r-abf2): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 19:05:35 +02:00
Efraim Flashner f21967a44b
gnu: retroarch: Fix building on armhf-linux.
* gnu/packages/emulators.scm (retroarch)[arguments]: Add custom flags
when building for armhf-linux.
2018-09-13 18:40:32 +03:00
Efraim Flashner fade67ab75
gnu: retroarch: Use shared zlib.
* gnu/packages/emulators.scm (retroarch)[arguments]: In custom
'configure phase, use our zlib instead of vendor's zlib.
2018-09-13 18:40:30 +03:00
Danny Milosavljevic 060366f6b3
gnu: rust@1.23.0: Inherit outputs.
* gnu/packages/rust.scm (rust-1.23)[outputs]: Inherit.
2018-09-13 17:19:04 +02:00
Danny Milosavljevic b78fe27b31
gnu: rust@1.25.0: Disable pedantic test.
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>
[disable-nil-enum-test]: New phase.
2018-09-13 17:17:15 +02:00
Danny Milosavljevic 6fe73b487b
gnu: rust: Accept more detailed gdb responses.
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust-1.25): Use it.
(rust-1.26): Use it.
(rust): Use it.
2018-09-13 17:17:15 +02:00
pimi 3cadd3ce93
gnu: Add r-abe.
gnu/packages/cran.scm (r-abe): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 15:21:40 +02:00
pimi d1ca3d7297
gnu: Add r-svdialogs.
gnu/packages/cran.scm (r-svdialogs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 15:07:45 +02:00
宋文武 26700caed9
gnu: racket: Fix incompatibility with libedit.
The former patching made racket detecting libedit as the old 2.11 version,
which leads to failure:
<https://lists.gnu.org/archive/html/help-guix/2018-09/msg00027.html>.

* gnu/packages/scheme.scm (racket)[arguments]: Patch the 'ffi-lib' call of
libedit using 'PLT_READLINE_LIB'.
2018-09-13 20:20:41 +08:00
Danny Milosavljevic 73dc7834de
gnu: rust@1.20.0: Replace "default-ar" by "ar".
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Replace
"default-ar" by "ar".
2018-09-13 10:10:49 +02:00
Danny Milosavljevic 1ab3e1dd98
gnu: Add rust@1.22.1.
* gnu/packages/rust.scm (rust-1.22): New variable.
2018-09-13 10:10:49 +02:00
Danny Milosavljevic 05ebff92bd
gnu: Add rust@1.21.0.
* gnu/packages/rust.scm (rust-1.21): New variable.
2018-09-13 10:10:49 +02:00
Danny Milosavljevic e69b1a7c6e
gnu: rust-bootstrap: Clean up comments.
* gnu/packages/rust.scm (rust-bootstrap): Clean up comments.
2018-09-13 10:10:49 +02:00
Danny Milosavljevic bfdc0e4d45
gnu: rust: Move "cc" from rust-bootstrap to rust proper.
* gnu/packages/rust.scm (rust-bootstrap)[arguments]<#:phases>[install]:
Delete "cc".
(rust-1.23)[arguments]<#:phases>: Delete "provide-cc" deletion.
2018-09-13 10:10:49 +02:00
Danny Milosavljevic 333c0ca966
gnu: rust@1.23.0: Use rust@1.20.0 as template.
* gnu/packages/rust.scm (rust-1.23)[inherit]: Use rust-1.20.
[arguments]<#:phases>: Delete "patch-cargo-tomls" phase deletion.
Add "provide-cc" phase deletion.
Add "configure-archiver" phase deletion.
[configure]: Inherit phase.
[reset-timestamps-after-changes]: Inherit phase.
[build]: Inherit phase.
[check]: Inherit phase.
[install]: Inherit phase.
[wrap-rustc]: Inherit phase.
2018-09-13 10:10:48 +02:00
Maxim Cournoyer f309671c28
gnu: Add emacs-org-reveal.
* gnu/packages/emacs.scm (emacs-org-reveal): New variable.
2018-09-12 22:48:04 -04:00
Maxim Cournoyer 82baeea297
gnu: Add emacs-elpy.
* gnu/packages/emacs.scm (emacs-elpy): New variable.
2018-09-12 22:16:25 -04:00
Maxim Cournoyer dcc31d7f41
gnu: Add emacs-highlight-indentation.
* gnu/packages/emacs.scm (emacs-highlight-indentation): New variable.
2018-09-12 22:16:25 -04:00
Maxim Cournoyer 87e9fb5753
gnu: Add emacs-pyvenv.
* gnu/packages/emacs.scm (emacs-pyvenv): New variable.
2018-09-12 22:16:24 -04:00
Maxim Cournoyer 2c6ff3a2bc
gnu: Add emacs-find-file-in-project.
* gnu/packages/emacs.scm (emacs-find-file-in-project): New variable.
2018-09-12 22:16:24 -04:00
Maxim Cournoyer 563f151bd4
gnu: Add emacs-mocker.
* gnu/packages/emacs.scm (emacs-mocker): New variable.
2018-09-12 22:16:24 -04:00
Maxim Cournoyer aaf10fa7d8
gnu: Add emacs-el-x.
* gnu/packages/emacs.scm (emacs-el-x): New variable.
2018-09-12 22:16:23 -04:00
Maxim Cournoyer 8795ce8673
gnu: Add python-black.
* gnu/packages/python.scm (python-black): New variable.
2018-09-12 22:16:23 -04:00
Maxim Cournoyer 7e846d07e8
gnu: Add python-toml.
* gnu/packages/python.scm (python-toml): New variables.
2018-09-12 22:16:23 -04:00
Maxim Cournoyer 4bd8f4f302
gnu: python-jedi: Update to 0.12.1.
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[propagated-inputs]: Move python-parso here, as it is required at run time.
2018-09-12 22:16:18 -04:00
Danny Milosavljevic 614cfd5c54
gnu: Add rust@1.20.0.
* gnu/packages/rust.scm (rust-1.20): New variable.
2018-09-13 00:25:01 +02:00
Danny Milosavljevic 3763e7716c
gnu: rust@1.19.0: Remove superfluous install-file call.
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Remove
superfluous install-file call.
2018-09-12 23:17:42 +02:00
Danny Milosavljevic 5a3fcf5b44
gnu: rust@1.19.0: Install rustdoc.
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[install]: Install
rustdoc.
2018-09-12 23:17:42 +02:00
Danny Milosavljevic 0bcd1bc778
gnu: rust@1.19.0: Use match-lambda directly.
Follow-up to 3159ef7c99.

* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Use
match-lambda directly.
2018-09-12 23:17:42 +02:00
Nils Gillmann f006237c54
gnu: gnurl: Update to 7.61.1.
* gnu/packages/gnunet.scm (gnurl): Update to 7.61.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-12 16:02:39 -04:00
Leo Famulari ff9008d8de
gnu: Zsh: Remove workaround required for Zsh 5.6.
This is a followup to commit 5a5d3e3563.

* gnu/packages/shells.scm (zsh)[arguments]: Remove substitutions in 'patch-test'
phase.
2018-09-12 15:21:42 -04:00
Pierre Neidhardt 4fa7f29f2a
gnu: emacs-hl-todo: Update to 1.9.0.
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.9.0.
2018-09-12 19:51:26 +02:00
Ricardo Wurmus 4a89bdd196
gnu: python-scikit-learn: Update to 0.19.2.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.2.
[source]: Fetch from git.
[arguments]: Run tests before installation; replace "check" phase, add
"build-ext" phase; delete "reset-gzip-timestamps" phase.
[native-inputs]: Add python-pytest and python-pandas; remove python-nose.
2018-09-12 19:35:02 +02:00
Pierre Neidhardt b002809f84
gnu: Add emacs-blimp.
* gnu/packages/emacs.scm (emacs-blimp): New variable.
2018-09-12 19:34:17 +02:00
Pierre Neidhardt 320105eadb
gnu: Add emacs-org-web-tools.
* gnu/packages/emacs.scm (emacs-org-web-tools): New variable.
2018-09-12 19:34:17 +02:00
Pierre Neidhardt 9c208f38f2
gnu: Add emacs-youtube-dl.
* gnu/packages/emacs.scm (emacs-youtube-dl): New variable.
2018-09-12 19:34:14 +02:00
Tobias Geerinckx-Rice acd4da3f29
gnu: libfilezilla: Update to 0.13.1.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.1.
2018-09-12 16:44:08 +02:00
Tobias Geerinckx-Rice bec13d872d
gnu: sg3-utils: Update to 1.43.
* gnu/packages/scsi.scm (sg3-utils): Update to 1.43.
[license]: Add bsd-2.
2018-09-12 16:44:08 +02:00
Tobias Geerinckx-Rice 0f304ba73e
gnu: syslinux: Use HTTPS home page.
* gnu/packages/bootloaders.scm (syslinux)[home-page]: Use HTTPS.
2018-09-12 16:09:38 +02:00
Tobias Geerinckx-Rice 60d8db74c6
gnu: syslinux: Use INVOKE.
* gnu/packages/bootloaders.scm (syslinux)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-09-12 16:09:38 +02:00
Tobias Geerinckx-Rice 5a5d3e3563
gnu: zsh: Update to 5.6.1.
* gnu/packages/shells.scm (zsh): Update to 5.6.1.
2018-09-12 16:09:38 +02:00
Tobias Geerinckx-Rice 4dbef67102
gnu: zsh: Use HTTPS.
* gnu/packages/shells.scm (zsh)[source, home-page]: Use HTTPS.
2018-09-12 16:09:37 +02:00
Tobias Geerinckx-Rice c8749b0250
gnu: Add perl-mock-config.
* gnu/packages/perl-check.scm (perl-mock-config): New public variable.
2018-09-12 16:09:37 +02:00
Efraim Flashner b2c8d31ff6
gnu: perl-moosex-getopt: Update to 0.73.
* gnu/packages/perl.scm (perl-moosex-getopt): Update to 0.73.
[native-inputs]: Add perl-module-build-tiny, perl-path-tiny,
perl-test-needs.
2018-09-12 10:28:47 +03:00
Eric Bavier bbe46a4af5
mpi: Factorize openmpi setup build phase.
* gnu/packages/mpi.scm (%openmpi-setup): New variable.
* gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi)
(superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental)
(sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
2018-09-11 20:29:04 -05:00
Eric Bavier 5882078e8c
font-fantasque-sans: Upgrade to 1.7.2.
* gnu/packages/fonts.scm (font-fantasque-sans): Upgrade to 1.7.2.
[native-inputs]: Add zip.
[arguments]: Add 'xrange->range phase for python3 compatibility.  Adjust
install phase to work with newly generated font variants.
2018-09-11 20:29:03 -05:00
Pierre Neidhardt 2b0820bf0d
gnu: emacs-helm: Update to 3.0.
* gnu/packages/emacs.scm (emacs-helm): Update to 3.0.
2018-09-11 23:53:35 +02:00
Pierre Neidhardt ee0d184502
gnu: Add emacs-hackernews.
* gnu/packages/emacs.scm (emacs-hackernews): New variable.
2018-09-11 23:53:35 +02:00
Pierre Neidhardt bd8f74dfbe
gnu: emacs-evil-collection: Update to 20180911.
* gnu/packages/emacs.scm (emacs-evil-collection): Update to 20180911.
2018-09-11 23:53:35 +02:00
Pierre Neidhardt ac9e307740
gnu: emacs-magit-todos: Update to 1.1.
* gnu/packages/emacs.scm (emacs-magit-todos): Update to 1.1.
2018-09-11 23:53:35 +02:00
Pierre Neidhardt 475e16578f
gnu: emacs-helm-system-packages: Update to 1.10.1.
* gnu/packages/emacs.scm (emacs-helm-system-packages): Update to 1.10.1.
2018-09-11 23:53:35 +02:00
Jan Nieuwenhuizen 4a67079f71
gnu: mes: Oops, use mirror://gnu download url.
* gnu/packages/mes.scm (mes): Oops, use mirror://gnu download url.
2018-09-11 22:34:02 +02:00
Tobias Geerinckx-Rice a855117c59
gnu: snakemake: Update home page.
* gnu/packages/python.scm (snakemake)[home-page]: Update.
2018-09-11 21:12:43 +02:00
Tobias Geerinckx-Rice 9b83c15afe
gnu: snakemake: Update to 5.2.2.
* gnu/packages/python.scm (snakemake): Update to 5.2.2.
2018-09-11 21:03:08 +02:00
Tobias Geerinckx-Rice a93de1ae9e
gnu: obnam: Add deprecation warning.
* gnu/packages/backup.scm (obnam)[synopsis, description]: Note its
retirement.
2018-09-11 21:03:07 +02:00
Tobias Geerinckx-Rice cd1e138cc6
gnu: unbound: Update to 1.8.0.
* gnu/packages/dns.scm (unbound): Update to 1.8.0.
2018-09-11 21:03:07 +02:00
Tobias Geerinckx-Rice 702a87f2d1
gnu: perl-dbd-mysql: Update to 4.047.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047.
[arguments]: Add 'skip-library-detection' phase.
2018-09-11 21:03:07 +02:00
Jonathan Brielmaier 52b0a352c3
gnu: libreoffice: Update to 6.1.0.3.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.0.3.
[source]: Correct indenting.
[inputs]: Add libnumbertext and python-lxml.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 17:46:30 +02:00
Jonathan Brielmaier aeba7d4650
gnu: Add libnumbertext.
* gnu/packages/libreoffice.scm (libnumbertext): New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 17:46:30 +02:00
Paul Garlick aa82260bc0
gnu: arpack-ng-openmpi: Fix build.
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add
'set-test-environment phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 17:46:29 +02:00