cde08a5120
gnu: guix: Update to f970946.
...
* gnu/packages/package-management.scm (guix): Update to f970946
2019-03-25 23:37:05 +01:00
516f6f55eb
gnu: docker: Use fewer modprobes.
...
Fixes <https://bugs.gnu.org/34333 >.
Reported by Allan Adair <allan@adair.io>.
* gnu/packages/patches/docker-use-fewer-modprobes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/docker.scm (docker)[source]: Use it.
2019-03-25 20:27:57 +01:00
cdfb69b46a
gnu: nano: Update to 4.0.
...
* gnu/packages/nano.scm (nano): Update to 4.0.
2019-03-25 15:02:59 -04:00
b9b177b317
gnu: Add r-svmisc.
...
* gnu/packages/cran.scm (r-svmisc): New variable.
2019-03-25 17:20:14 +01:00
3f6e6e9857
gnu: Add r-rjava.
...
* gnu/packages/cran.scm (r-rjava): New variable.
2019-03-25 17:19:47 +01:00
4f8b1fb35f
gnu: Add r-r2html.
...
* gnu/packages/cran.scm (r-r2html): New variable.
2019-03-25 16:29:03 +01:00
7166b77adc
gnu: Add r-sampling.
...
* gnu/packages/cran.scm (r-sampling): New variable.
2019-03-25 16:28:38 +01:00
6bdce94f43
gnu: r-gsl: Update to 2.1-6.
...
* gnu/packages/cran.scm (r-gsl): Update to 2.1-6.
2019-03-25 16:28:20 +01:00
a6d867fed9
gnu: Add r-sigpathway.
...
* gnu/packages/bioconductor.scm (r-sigpathway): New variable.
2019-03-25 16:20:04 +01:00
9d0f794229
gnu: Add r-anota.
...
* gnu/packages/bioconductor.scm (r-anota): New variable.
2019-03-25 16:20:00 +01:00
c04f230eb3
gnu: Add r-gosemsim.
...
* gnu/packages/bioconductor.scm (r-gosemsim): New variable.
2019-03-25 16:19:52 +01:00
3e41919d51
gnu: Add r-heatplus.
...
* gnu/packages/bioconductor.scm (r-heatplus): New variable.
2019-03-25 16:19:40 +01:00
c538bcdd38
gnu: Add r-varianttools.
...
* gnu/packages/bioconductor.scm (r-varianttools): New variable.
2019-03-25 16:09:16 +01:00
8a5460b4fb
gnu: Add r-triform.
...
* gnu/packages/bioconductor.scm (r-triform): New variable.
2019-03-25 16:09:07 +01:00
3080b81af6
gnu: Add r-hapassoc.
...
* gnu/packages/cran.scm (r-hapassoc): New variable.
2019-03-25 16:02:15 +01:00
a0583c0d13
gnu: Add r-hierfstat.
...
* gnu/packages/cran.scm (r-hierfstat): New variable.
2019-03-25 15:58:38 +01:00
ab7f1eb97a
gnu: Add brightnessctl.
...
* gnu/packages/linux.scm (brightnessctl): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-25 15:21:15 +01:00
80eb01c776
gnu: r-gkmsvm: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-gkmsvm): Move from here...
* gnu/packages/bioconductor.scm (r-gkmsvm): ...to here.
2019-03-25 14:34:41 +01:00
bac0ca322c
gnu: r-kernlab: Move to (gnu packages cran).
...
* gnu/packages/machine-learning.scm (r-kernlab): Move from here...
* gnu/packages/cran.scm (r-kernlab): ...to here.
2019-03-25 14:33:02 +01:00
c5a2b518ad
gnu: r-wgcna: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-wgcna): Move from here...
* gnu/packages/cran.scm (r-wgcna): ...to here.
2019-03-25 14:05:09 +01:00
72a216a9d0
gnu: r-optparse: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-optparse): Move from here...
* gnu/packages/cran.scm (r-optparse): ...to here.
2019-03-25 14:04:19 +01:00
0ef062b338
gnu: r-bookdown: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-bookdown): Move from here...
* gnu/packages/cran.scm (r-bookdown): ...to here.
2019-03-25 14:03:21 +01:00
469fb43891
gnu: r-sparql: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-sparql): Move from here...
* gnu/packages/cran.scm (r-sparql): ...to here.
2019-03-25 14:01:56 +01:00
7cd4ff2f0c
gnu: Add r-tdthap.
...
* gnu/packages/cran.scm (r-tdthap): New variable.
2019-03-25 14:00:32 +01:00
b8fea3c859
gnu: Add r-hwde.
...
* gnu/packages/cran.scm (r-hwde): New variable.
2019-03-25 14:00:32 +01:00
1cdd9f0e8a
gnu: Add r-ldheatmap.
...
* gnu/packages/cran.scm (r-ldheatmap): New variable.
2019-03-25 14:00:32 +01:00
d4a255a484
gnu: Add r-dlmap.
...
* gnu/packages/cran.scm (r-dlmap): New variable.
2019-03-25 14:00:32 +01:00
73fcd22244
gnu: Add r-ibdreg.
...
* gnu/packages/cran.scm (r-ibdreg): New variable.
2019-03-25 14:00:31 +01:00
bffb58269f
gnu: Add r-bqtl.
...
* gnu/packages/cran.scm (r-bqtl): New variable.
2019-03-25 14:00:31 +01:00
c3b5c803f0
gnu: perl-svg: Update source URL.
...
* gnu/packages/perl.scm (perl-svg)[source]: Update URL.
2019-03-25 14:11:03 +01:00
034eae9c12
gnu: perl-class-date: Update source URL.
...
* gnu/packages/perl.scm (perl-class-date)[source]: Update URL.
2019-03-25 14:11:03 +01:00
587f764e2a
gnu: perl-mouse: Update source URL.
...
* gnu/packages/perl.scm (perl-mouse)[source]: Update URL.
2019-03-25 14:11:02 +01:00
2db3b2d303
gnu: perl-carp: Update source URL.
...
* gnu/packages/perl.scm (perl-carp)[source]: Update URL.
2019-03-25 14:11:02 +01:00
a4876fbe17
gnu: perl-class-accessor-grouped: Update source URL.
...
* gnu/packages/perl.scm (perl-class-accessor-grouped)[source]:
Update URL.
2019-03-25 14:10:45 +01:00
a7da90936f
gnu: perl-base: Update source URL.
...
* gnu/packages/perl.scm (perl-base)[source]: Update URL.
2019-03-25 13:34:59 +01:00
83617aec58
gnu: perl-datetime-calendar-julian: Update source URL.
...
* gnu/packages/perl.scm (perl-datetime-calendar-julian)[source]: Update URL.
2019-03-25 13:31:29 +01:00
ae61388fb5
gnu: perl-carp-clan: Update source URL.
...
* gnu/packages/perl.scm (perl-carp-clan)[source]: Update URL.
2019-03-25 13:27:48 +01:00
e68f20502c
gnu: perl-class-c3-componentised: Update source URL.
...
* gnu/packages/perl.scm (perl-class-c3-componentised)[source]:
Update URL.
2019-03-25 13:18:35 +01:00
5ca9cb1e17
gnu: perl-plack-test-externalserver: Update source URL.
...
* gnu/packages/web.scm (perl-plack-test-externalserver)[source]:
Update URL.
2019-03-25 13:11:25 +01:00
fd9fe868f8
gnu: perl-moosex-emulate-class-accessor-fast: Update source URL.
...
* gnu/packages/perl.scm (perl-moosex-emulate-class-accessor-fast)
[source]: Update URL.
2019-03-25 12:59:39 +01:00
357b69499a
gnu: perl-log-any: Update source URL.
...
* gnu/packages/perl.scm (perl-log-any)[source]: Update URL.
2019-03-25 12:59:39 +01:00
3ed36f3153
gnu: perl-file-temp: Update source URL.
...
* gnu/packages/perl.scm (perl-file-temp)[source]: Update URL.
2019-03-25 12:59:39 +01:00
799f484251
gnu: perl-object-signature: Update source URL.
...
* gnu/packages/perl.scm (perl-object-signature)[source]: Update URL.
2019-03-25 12:59:39 +01:00
f970946c1d
gnu: fmt: Update to 5.3.0.
...
* gnu/packages/pretty-print.scm (fmt): Update to 5.3.0.
[arguments]: Remove #:configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:27 +01:00
8dc329656b
gnu: Add emacs-company-jedi.
...
* gnu/packages/emacs-xyz.scm (emacs-company-jedi): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
1172d914ea
gnu: Add emacs-company-flow.
...
* gnu/packages/emacs-xyz.scm (emacs-company-flow): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
06aff73855
gnu: Add emacs-jedi.
...
* gnu/packages/emacs-xyz.scm (emacs-jedi): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
16f6a75db0
gnu: Add emacs-python-environment.
...
* gnu/packages/emacs-xyz.scm (emacs-python-environment): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
13e99cfcd8
gnu: Add emacs-prescient.
...
* gnu/packages/emacs-xyz.scm (emacs-prescient): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
5247cd2a5e
gnu: Add emacs-company-auctex.
...
* gnu/packages/emacs-xyz.scm (emacs-company-auctex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
6cd504ce75
gnu: Add emacs-company-cabal.
...
* gnu/packages/emacs-xyz.scm (emacs-company-cabal): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
bb034ab080
gnu: Add emacs-company-lsp.
...
* gnu/packages/emacs-xyz.scm (emacs-company-lsp): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
de5ea7d961
gnu: Add gPodder.
...
* gnu/packages/podcast.scm (gpodder): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
b58ab1598f
gnu: Add python-mygpoclient.
...
* gnu/packages/gpodder.scm (python-mygpoclient): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:25 +01:00
4518a9dfa8
gnu: icecat: Update to 60.6.1-guix1 [security fixes].
...
Includes fixes for CVE-2019-9810 and CVE-2019-9813.
* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.1-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
2019-03-25 05:23:39 -04:00
cd47dcf6a2
gnu: Add r-haplo-stats.
...
* gnu/packages/cran.scm (r-haplo-stats): New variable.
2019-03-25 10:02:03 +01:00
a8c965cfec
gnu: Add r-rms.
...
* gnu/packages/cran.scm (r-rms): New variable.
2019-03-25 10:02:03 +01:00
6a472af3f6
gnu: Add r-polspline.
...
* gnu/packages/cran.scm (r-polspline): New variable.
2019-03-25 10:02:03 +01:00
5ef7d057ed
gnu: Add r-snp-plotter.
...
* gnu/packages/cran.scm (r-snp-plotter): New variable.
2019-03-25 10:02:02 +01:00
601ddf02cc
gnu: Add r-genetics.
...
* gnu/packages/cran.scm (r-genetics): New variable.
2019-03-25 10:02:02 +01:00
33b233ba63
gnu: linux-libre: Update to 5.0.4.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.4.
(%linux-libre-hash): Update hash.
2019-03-25 01:23:04 -04:00
be6d2713d3
gnu: linux-libre@4.19: Update to 4.19.31.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.31.
(%linux-libre-4.19-hash): Update hash.
2019-03-25 01:22:06 -04:00
60b223ac51
gnu: linux-libre@4.14: Update to 4.14.108.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.108.
(%linux-libre-4.14-hash): Update hash.
2019-03-25 01:21:12 -04:00
eb69d5ddde
gnu: linux-libre@4.9: Update to 4.9.165.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.165.
2019-03-25 01:20:35 -04:00
e02b7694ec
gnu: linux-libre@4.4: Update to 4.4.177.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.177.
2019-03-25 01:19:39 -04:00
b9a57fd1b2
gnu: perl-uri-escape: Update source tarball URL.
...
* gnu/packages/perl-web.scm (perl-uri-escape)[source]: Update URL.
2019-03-25 01:59:50 +03:00
8559df6406
gnu: perl6-meta6: Remove unsupported syntax from description.
...
* gnu/packages/perl6.scm (perl6-meta6)[description]: Remove @quot.
2019-03-24 23:55:03 +01:00
b15d19a651
gnu: perl6-json-class: Remove unsupported syntax from description.
...
* gnu/packages/perl6.scm (perl6-json-class)[description]: Remove @quot.
2019-03-24 23:54:51 +01:00
cd977b35be
gnu: Add r-rmetasim.
...
* gnu/packages/cran.scm (r-rmetasim): New variable.
2019-03-24 23:44:13 +01:00
3d2bc81751
gnu: Add r-pegas.
...
* gnu/packages/cran.scm (r-pegas): New variable.
2019-03-24 23:44:13 +01:00
91c1fbdfdd
gnu: Add r-adegenet.
...
* gnu/packages/cran.scm (r-adegenet): New variable.
2019-03-24 23:44:13 +01:00
c4d521ba2c
gnu: r-seqinr: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-seqinr): Move from here...
* gnu/packages/cran.scm (r-seqinr): ...to here.
2019-03-24 23:44:13 +01:00
49a48c496f
gnu: r-acsnminer: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-acsnminer): Move from here...
* gnu/packages/cran.scm (r-acsnminer): ...to here.
2019-03-24 23:44:13 +01:00
e371e534a7
gnu: Add r-spdep.
...
* gnu/packages/cran.scm (r-spdep): New variable.
2019-03-24 23:44:13 +01:00
d884e4072b
gnu: Add r-sf.
...
* gnu/packages/cran.scm (r-sf): New variable.
2019-03-24 23:44:12 +01:00
dcc502865c
gnu: Add r-deldir.
...
* gnu/packages/cran.scm (r-deldir): New variable.
2019-03-24 23:44:12 +01:00
e5228273de
gnu: Add r-learnbayes.
...
* gnu/packages/cran.scm (r-learnbayes): New variable.
2019-03-24 23:44:12 +01:00
66c08ff4c3
gnu: Add r-spdata.
...
* gnu/packages/cran.scm (r-spdata): New variable.
2019-03-24 23:44:12 +01:00
518c1dea10
gnu: Add r-classint.
...
* gnu/packages/cran.scm (r-classint): New variable.
2019-03-24 23:44:12 +01:00
7002c44fb0
gnu: Add r-units.
...
* gnu/packages/cran.scm (r-units): New variable.
2019-03-24 23:44:12 +01:00
011ec1e51b
gnu: Add udunits.
...
* gnu/packages/c.scm (udunits): New variable.
2019-03-24 23:44:12 +01:00
2a35bb1509
gnu: Add r-snpmaxsel.
...
* gnu/packages/cran.scm (r-snpmaxsel): New variable.
2019-03-24 23:44:12 +01:00
ea87b4e37d
gnu: Add r-stepwise.
...
* gnu/packages/cran.scm (r-stepwise): New variable.
2019-03-24 23:44:12 +01:00
64843c6b0f
gnu: perl-time-hires: Update source tarball URL.
...
* gnu/packages/perl.scm (perl-time-hires)[source]: Update URL.
2019-03-25 01:36:56 +03:00
fab9aa1daa
gnu: Add xfce4-whiskermenu-plugin.
...
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-24 23:06:12 +01:00
48e595b7a8
gnu: Add loadkeys-static.
...
* gnu/packages/linux.scm (loadkeys-static): New variable.
2019-03-24 23:06:12 +01:00
16360cc884
gnu: flatpak: Use glib-or-gtk-build-system.
...
This wraps 'flatpak' such that GIO_EXTRA_MODULES is set, thereby
allowing GIO (part of GLib) to find the GnuTLS-based TLS backend that
glib-networking provides.
Fixes <https://bugs.gnu.org/34861 >.
Reported by Raghav Gururajan <rvgn@disroot.org>.
* gnu/packages/package-management.scm (flatpak)[build-system]: Change to
GLIB-OR-GTK-BUILD-SYSTEM.
2019-03-24 23:06:10 +01:00
37f6289605
gnu: avidemux: Update to 2.7.3.
...
* gnu/packages/video.scm (avidemux): Update to 2.7.3.
2019-03-24 23:51:09 +01:00
c30be23a6d
gnu: Add r-untb.
...
* gnu/packages/cran.scm (r-untb): New variable.
2019-03-24 20:36:51 +01:00
761c097ff5
gnu: Add r-brobdingnag.
...
* gnu/packages/cran.scm (r-brobdingnag): New variable.
2019-03-24 20:36:51 +01:00
459dcb95f4
gnu: Add r-partitions.
...
* gnu/packages/cran.scm (r-partitions): New variable.
2019-03-24 20:36:51 +01:00
f33cb7ab7e
gnu: Add r-bedr.
...
* gnu/packages/cran.scm (r-bedr): New variable.
2019-03-24 20:36:51 +01:00
79db3a1a33
gnu: Add r-wgaim.
...
* gnu/packages/cran.scm (r-wgaim): New variable.
2019-03-24 20:36:51 +01:00
f98d97c6f2
gnu: Add r-lemon.
...
* gnu/packages/cran.scm (r-lemon): New variable.
2019-03-24 20:36:51 +01:00
9ebb7f8181
gnu: r-phangorn: Update to 2.5.3.
...
* gnu/packages/bioinformatics.scm (r-phangorn): Update to 2.5.3.
2019-03-24 20:36:51 +01:00
adfbda0fb0
gnu: r-gqtlstats: Update to 1.14.1.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.14.1.
2019-03-24 20:36:51 +01:00
7a73c247b2
gnu: r-rbgl: Update to 1.58.2.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.2.
2019-03-24 20:36:51 +01:00
104ec4c9cf
gnu: r-getopt: Update to 1.20.3.
...
* gnu/packages/cran.scm (r-getopt): Update to 1.20.3.
2019-03-24 20:36:51 +01:00
3be585cf44
gnu: r-polynom: Update to 1.4-0.
...
* gnu/packages/cran.scm (r-polynom): Update to 1.4-0.
2019-03-24 20:36:51 +01:00
42e7552dc8
gnu: r-quantmod: Update to 0.4-14.
...
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-14.
2019-03-24 20:36:51 +01:00
Ludovic Courtès