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Author SHA1 Message Date
Marius Bakke 5576cfabf3
Merge branch 'master' into core-updates 2018-03-29 17:34:41 +02:00
Marius Bakke 12cb6c31df
gnu: cmake: Update to 3.11.0. 
* gnu/packages/cmake.scm (cmake): Update to 3.11.0.
[arguments]: Enable fixed test.  Adjust file substitutions.  Run tests and
"./configure" in parallel.
(cmake-3.11): Remove variable.
* gnu/packages/storage.scm (ceph)[arguments]: Remove #:cmake.
 2018-03-29 16:54:52 +02:00
Roel Janssen e086d2f68b
gnu: r-mutationalpatterns: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3;
  [propagated-inputs]: Remove r-gridextra.
 2018-03-29 15:50:44 +02:00
Roel Janssen 53e42694e5
gnu: kaiju: Update to 1.6.2. 
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2;
  [inputs]: Add zlib.
 2018-03-29 15:40:52 +02:00
Vasile Dumitrascu d232e02ecf
gnu: Add duperemove. 
* gnu/packages/disk.scm (duperemove): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-29 15:17:35 +02:00
Ludovic Courtès 9c3f2c2e83
gnu: Add python-debug. 
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/python.scm (python-debug): New variable.
 2018-03-29 15:17:35 +02:00
Efraim Flashner 594e5d7368
gnu: nano: Update to 2.9.5. 
* gnu/packages/nano.scm (nano): Update to 2.9.5.
 2018-03-29 16:08:06 +03:00
Marius Bakke 1abc295b9b
gnu: libgpg-error: Update to 1.28. 
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.28.
 2018-03-29 14:28:26 +02:00
Roel Janssen c974008d91
gnu: Add r-idr. 
* gnu/packages/cran.scm (r-idr): New variable.
 2018-03-29 14:26:44 +02:00
Roel Janssen 996bed0608
gnu: Add r-amap. 
* gnu/packages/cran.scm (r-amap): New variable.
 2018-03-29 14:11:21 +02:00
Roel Janssen 6174db2b2c
gnu: Add r-venndiagram. 
* gnu/packages/cran.scm (r-venndiagram): New variable.
 2018-03-29 14:08:36 +02:00
Roel Janssen ddbf2a98ba
gnu: Add r-pastecs. 
* gnu/packages/cran.scm (r-pastecs): New variable.
 2018-03-29 13:54:30 +02:00
Ricardo Wurmus 017bffc1a3
gnu: libusb4java: Adjust for building with libusb 1.0.22. 
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove
"-Werror" flag.
 2018-03-29 12:26:38 +02:00
Ricardo Wurmus b0a4b6d957
gnu: libusb-for-axoloti: Update patch. 
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb
1.0.22.
 2018-03-29 12:26:38 +02:00
Chris Marusich 7874e9e047
gnu: Refactor boot-service-type and activation-service-type. 
* gnu/services.scm (boot-service-type) <compose>: Use the "identity"
  procedure instead of the "append" procedure because it more accurately
  reflects the intent, which is to simply return the single list of
  extensions to which fold-services applies the "compose" procedure.
  (activation-service-type) <compose>: Likewise.
 2018-03-29 08:38:49 +02:00
Chris Marusich 881c61d062
doc: Improve <service-type> documentation. 
* doc/guix.texi (Service Reference): Correct and clarify some statements
  regarding the "compose" and "extend" procedures of <service-type>.
 2018-03-29 07:29:49 +02:00
Chris Marusich 3cd4447f56
guix-install.sh: Explicitly set root's home directory. 
* etc/guix-install.sh (ROOT_HOME): New variable.
  (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms):
  Use ROOT_HOME instead of ~root or the HOME environment variable.
* doc/guix.texi (Binary Installation): Instead of assuming that ~ and
  $HOME refer to root's directory simply because commands are being run
  as root, explicilty refer to it via ~root.

Fixes: <https://bugs.gnu.org/30728>
 2018-03-29 07:03:37 +02:00
Marius Bakke 61565a5f4a
gnu: tcl, tk: Update to 8.6.8. 
* gnu/packages/tcl.scm (tcl, tk): Update to 8.6.8.
 2018-03-29 02:56:23 +02:00
Marius Bakke ce35dc84a1
gnu: python: Update to 3.6.5. 
* gnu/packages/python.scm (python-3.6): Update to 3.6.5.
 2018-03-29 02:56:00 +02:00
Marius Bakke 7a08150429
gnu: icu4c: Update to 61.1. 
* gnu/packages/icu4c.scm (icu4c): Update to 61.1.
 2018-03-29 02:54:09 +02:00
Marius Bakke ab0bdd5456
gnu: util-linux: Update to 2.32. 
* gnu/packages/patches/util-linux-tests.patch: Adjust context.
* gnu/packages/patches/util-linux-CVE-2018-7738.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (util-linux): Update to 2.32.
[source](patches): Remove 'util-linux-CVE-2018-7738.patch'.
 2018-03-29 02:43:06 +02:00
Jelle Licht ce353a548f
gnu: node: Update to 9.10.0. 
* gnu/packages/node.scm (node): Update to 9.10.0.
 2018-03-28 23:33:53 +02:00
Jelle Licht b63af9b7c7
gnu: http-parser: Update to 2.8.0. 
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
 2018-03-28 23:33:43 +02:00
Marius Bakke 0a8985f395
gnu: xf86-video-ati: Update to 18.0.1. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
 2018-03-28 21:23:21 +02:00
Marius Bakke 4d967992d8
gnu: xf86-input-libinput: Update to 0.27.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
 2018-03-28 21:23:21 +02:00
Leo Famulari 935806b822
gnu: ntp: Update to 4.2.8p11 [security-fixes]. 
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
 2018-03-28 14:59:47 -04:00
Leo Famulari 590bdc149b
gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739]. 
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2o): New variable.
 2018-03-28 14:07:45 -04:00
Konrad Hinsen 1cde746700
gnu: Add r-parsedate. 
* gnu/packages/cran.scm (r-parsedate): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:18:20 +02:00
Maxim Cournoyer 3481c714c6
gnu: mu: Fix tests failures triggered by DST. 
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:14:40 +02:00
Nadya Voronova 910deec66c
gnu: Add tcalc. 
* gnu/packages/maths.scm (tcalc): New variables.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:13:00 +02:00
Ludovic Courtès c5e7bca248
build: Build (guix ci) and (guix scripts weather) when HAVE_GUILE_JSON. 
* Makefile.am (MODULES): Move guix/ci.scm and guix/scripts/weather.scm
to the HAVE_GUILE_JSON-guarded block.
 2018-03-28 17:06:33 +02:00
Ludovic Courtès 183445a6ed
weather: Report continuous integration stats. 
* guix/scripts/weather.scm (histogram, throughput, queued-subset): New
procedures.
(report-server-coverage): Report CI information.
* doc/guix.texi (Invoking guix weather): Document it.
 2018-03-28 16:17:06 +02:00
Ludovic Courtès b3517f3f9f
Add (guix ci). 
* guix/ci.scm: New file.
* Makefile.am (MODULES): Add it.
 2018-03-28 16:17:06 +02:00
Arun Isaac 733d66a532
gnu: culmus: Rename to font-culmus. 
* gnu/packages/fonts.scm (culmus): Rename to...
(font-culmus): ...this. Re-indent.
 2018-03-28 14:58:34 +05:30
Arun Isaac 0328c514ed
gnu: culmus: Switch to font-build-system. 
* gnu/packages/fonts.scm (culmus): Switch to font-build-system.
[arguments]: Replace system* with invoke.
 2018-03-28 14:58:34 +05:30
Arun Isaac 15795e0723
gnu: font-linuxlibertine: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system.
[arguments]: Replace system* with invoke.
 2018-03-28 14:58:34 +05:30
Arun Isaac 803b9e8bf4
gnu: font-lato: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-lato): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
 2018-03-28 14:58:33 +05:30
Mark H Weaver 5f69388d70
gnu: openssl: Update to 1.0.2o. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2o.  Remove snippet.
 2018-03-28 04:20:33 -04:00
Mark H Weaver d4040f6e23
gnu: elogind: Fix build with glibc-2.27. 
* gnu/packages/patches/elogind-glibc-2.27.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/freedesktop.scm (elogind)[source]: Add patch.
[arguments]: Replace the bootstrap phase with what was previously the
autogen phase.
 2018-03-28 00:04:35 -04:00
Mark H Weaver 78666a68a5
gnu: liba52: Use invoke. 
* gnu/packages/video.scm (liba52)[arguments]: Use invoke in the custom
bootstrap phase.
 2018-03-27 21:35:49 -04:00
Mark H Weaver 3595e83dc5
gnu: aalib: Use invoke. 
* gnu/packages/video.scm (aalib)[arguments]: Use invoke in the custom
configure phase.
 2018-03-27 21:35:47 -04:00
Mark H Weaver 5f55ca2105
gnu: aspell-dict-*: Use invoke. 
* gnu/packages/aspell.scm (aspell-dictionary): Use invoke in the custom
configure phase.
 2018-03-27 21:35:45 -04:00
Mark H Weaver 1e868858fd
tests: Use invoke and return #t from all builders. 
* tests/packages.scm ("package-source-derivation, snippet", "trivial")
("trivial with local file as input", "trivial with source")
("trivial with system-dependent input", "trivial with #:allowed-references")
("--search-paths with pattern", "--search-paths with single-item search path")
("replacement also grafted"): In the builders, raise an exception on errors
and otherwise return #t.  Use invoke.
 2018-03-27 21:35:43 -04:00
Mark H Weaver e3cfef22c4
gnu: Use invoke and return #t from all builders. 
* gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm,
gnu/packages/avr.scm, gnu/packages/base.scm, gnu/packages/bioinformatics.scm,
gnu/packages/certs.scm, gnu/packages/check.scm, gnu/packages/code.scm,
gnu/packages/commencement.scm, gnu/packages/dictionaries.scm,
gnu/packages/docbook.scm, gnu/packages/emacs.scm, gnu/packages/embedded.scm,
gnu/packages/fonts.scm, gnu/packages/games.scm, gnu/packages/gnome.scm,
gnu/packages/gnu-doc.scm, gnu/packages/guile.scm, gnu/packages/hurd.scm,
gnu/packages/javascript.scm, gnu/packages/libreoffice.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lxde.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm,
gnu/packages/pkg-config.scm, gnu/packages/qt.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/sdl.scm, gnu/packages/statistics.scm,
gnu/packages/syncthing.scm, gnu/packages/tex.scm, gnu/packages/web.scm,
gnu/packages/wine.scm, gnu/packages/xfce.scm: In the builders of packages
using 'trivial-build-system', use invoke where appropriate, raise exceptions
on errors, and otherwise return #t.
 2018-03-27 21:35:41 -04:00
Mark H Weaver 6715e1c24f
gnu: 0ad-data: Use invoke. 
* gnu/packages/games.scm (0ad-data)[source]: Use invoke in the snippet.
 2018-03-27 21:35:37 -04:00
Mark H Weaver 22fc1b90f0
gnu: vera: Use invoke. 
* gnu/packages/dictionaries.scm (vera)[arguments]: Use invoke and remove
vestigial plumbing in the builder.
 2018-03-27 21:35:35 -04:00
Mark H Weaver 09b8c04e22
gnu: sicp: Use invoke. 
* gnu/packages/scheme.scm (sicp)[arguments]: Use invoke and remove vestigial
plumbing in the builder.
 2018-03-27 21:35:29 -04:00
Mark H Weaver 6ef66d3f12
gnu: icecat: Add fix for CVE-2018-5148. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add the fix for CVE-2018-5148
from the upstream mozilla-esr52 repository.
 2018-03-27 21:08:15 -04:00
Tobias Geerinckx-Rice 6076496b51
gnu: curl: Use nghttp2's ‘lib’ output. 
This follows up on commit 1300e4ee5b,
which was based on a monolithic nghttp2.

* gnu/packages/curl.scm (curl)[inputs]: Use nghttp2's ‘lib’ output.
 2018-03-28 02:27:07 +02:00
Leo Famulari 4d99a3215c
gnu: mupdf: Fix CVE-2018-{6544,1000051}. 
* gnu/packages/patches/mupdf-CVE-2018-1000051.patch,
gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
 2018-03-27 19:00:03 -04:00