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Author SHA1 Message Date
Marius Bakke 031349075a
Revert "gnu: nss, nss-certs: Update to 3.29.3." 
Hydra failed to build this version. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2017-03/msg00408.html.

This reverts commit 4f3dcdd99b.
 2017-03-14 22:26:18 +01:00
Julien Lepiller edda7ebec1
gnu: Add ocaml-ppx-typerep-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
 2017-03-14 22:09:56 +01:00
Julien Lepiller d2203187fe
gnu: Add ocaml-ppx-let. 
* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
 2017-03-14 22:09:50 +01:00
Julien Lepiller 250ac438e7
gnu: Add ocaml-ppx-enumerate. 
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
 2017-03-14 22:09:48 +01:00
Julien Lepiller a43160ee6f
gnu: Add ocaml-ppx-assert. 
* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable.
 2017-03-14 22:09:46 +01:00
Julien Lepiller 651563bd71
gnu: Add ocaml-ppx-here. 
* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
 2017-03-14 22:09:44 +01:00
Julien Lepiller 14af90cfbd
gnu: Add ocaml-ppx-variants-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable.
 2017-03-14 22:09:41 +01:00
Julien Lepiller 334436f051
gnu: Add ocaml-ppx-sexp-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-conv): New variable.
 2017-03-14 22:09:39 +01:00
Julien Lepiller d1d90df63b
gnu: Add ocaml-variantslib. 
* gnu/packages/ocaml.scm (ocaml-variantslib): New variable.
 2017-03-14 22:09:37 +01:00
Julien Lepiller ef0051b2c5
gnu: Add ocaml-typerep. 
* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
 2017-03-14 22:09:33 +01:00
Julien Lepiller d19c1b4105
gnu: Add ocaml-sexplib. 
* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.
 2017-03-14 22:09:14 +01:00
Marius Bakke 77c5d63f4d
gnu: libidn2: Create 'pkg-config' file. 
* gnu/packages/libidn.scm (libidn2)[arguments]: Add phase creating libidn2.pc.
 2017-03-14 21:29:27 +01:00
Kei Kebreau 9099a45792
gnu: asciidoc: Add XML and XSLT support. 
* gnu/packages/documentation.scm (asciidoc)[arguments]: Add
set-xml-binary-paths phase.
[inputs]: Add libxml2 and libxslt.
 2017-03-14 15:57:54 -04:00
Efraim Flashner 568004c3c9
gnu: nss: Build for aarch64-linux with 64-bit support. 
* gnu/packages/gnuzilla.scm (nss)[arguments]: Set the environmental
variable 'USE_64' on aarch64-linux also.
 2017-03-14 20:48:39 +02:00
Efraim Flashner 044006f3d2
gnu: mesa: Enable gallium tests. 
* gnu/packages/gl.scm (mesa)[arguments]: Add configure flag to enable
the gallium tests.
 2017-03-14 20:48:36 +02:00
Efraim Flashner 2a8b89c27f
gnu: mesa: Customize build flags based on architecture. 
* gnu/packages/gl.scm (mesa)[arguments]: On armhf-linux and
aarch64-linux remove the i915 gallium driver and add freedreno and vc4.
 2017-03-14 20:48:32 +02:00
Efraim Flashner c5e91014a2
gnu: mesa: Use llvm backend for Intel hardware only. 
* gnu/packages/gl.scm (mesa)[inputs]: Only use llvm for i686-linux and
x86_64-linux.
[arguments]: Only pass '--enable-gallium-llvm' to 'configure on
i686-linux and x86_64-linux.
 2017-03-14 20:48:27 +02:00
Leo Famulari 9b05ccfedd
gnu: linux-libre@4.1: Update to 4.1.39. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.39.
 2017-03-14 12:55:20 -04:00
Leo Famulari 962cbb24c5
gnu: windowmaker: Use modify-phases syntax. 
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Use modify-phases.
 2017-03-14 12:10:16 -04:00
Leo Famulari 8cac5bca12
gnu: windowmaker: Update to 0.95.8. 
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.8.
 2017-03-14 12:10:12 -04:00
Efraim Flashner d779305db0
gnu: aria2: Update to 1.31.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.31.0.
 2017-03-14 15:05:27 +02:00
Ludovic Courtès 28958b646f
gnu: python-parsedatetime: Update to 2.3. 
Version 2.1 was apparently time-sensitive and started failing like this:

  ======================================================================
  FAIL: testFloat (tests.TestDelta.test)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 64, in testFloat
      self.cal.parse('1.4 months ago', self.source), months=-1.4)
    File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 37, in assertDelta
      self.assertTrue(diff < 0.05, '%s is not less than 0.05' % diff)
  AssertionError: 0.0666666666667 is not less than 0.05

  ----------------------------------------------------------------------

* gnu/packages/python.scm (python-parsedatetime): Update to 2.3.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
[propagated-inputs]: New field.
 2017-03-14 11:18:16 +01:00
ng0 a4651f6411
gnu: Add dovecot-libsodium-plugin. 
* gnu/packages/mail.scm (dovecot-libsodium-plugin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-14 10:28:57 +01:00
ng0 944a5cdd0d
gnu: Add dovecot-trees. 
* gnu/packages/mail.scm (dovecot-trees): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-14 10:28:57 +01:00
Leo Famulari 49c2a46e74
gnu: python@2.7: Update to 2.7.13 
* gnu/packages/python.scm (python-2.7): Update to 2.7.13.
 2017-03-14 02:45:23 -04:00
Leo Famulari dc5cec21f2
gnu: python@2.7: Fix getentropy() calls on kernels < 3.17. 
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[source]: Use it.
 2017-03-14 02:45:23 -04:00
Leo Famulari a70782d37b
gnu: wireless-regdb: Update to 2017.03.07. 
* gnu/packages/linux.scm (wireless-regdb): Update to 2017.03.07.
 2017-03-14 01:58:35 -04:00
Ludovic Courtès 0f11f64022
gnu: guile-cairo: Honor the Guile effective version. 
* gnu/packages/gtk.scm (guile-cairo)[arguments]: Add #:modules.
Get the effective version of Guile and use that in installation
directory names.
 2017-03-13 22:26:54 +01:00
Ludovic Courtès b97438650d
gnu: guile-cairo: Use 'modify-phases'. 
* gnu/packages/gtk.scm (guile-cairo)[arguments]: Use 'modify-phases'.
 2017-03-13 22:18:13 +01:00
Efraim Flashner 3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-13 23:08:49 +02:00
Ludovic Courtès 12773de3e7
gnu: Add guile2.2-lib. 
* gnu/packages/guile.scm (guile2.2-lib): New variable.
 2017-03-13 21:52:38 +01:00
Efraim Flashner 864a9590ad
gnu: luajit: Update to 2.1.0-beta2. 
* gnu/packages/lua.scm (luajit): Update to 2.1.0-beta2.
 2017-03-13 21:47:30 +02:00
Leo Famulari 7cb68a3cb3
gnu: Remove python-3.4. 
* gnu/packages/python.scm (python-3.4): Remove variable.
* gnu/packages/patches/python-3.4-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-13 15:33:54 -04:00
humanitiesNerd a71c863834
gnu: Add python-flask-login. 
* gnu/packages/python.scm (python-flask-login, python2-flask-login): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:56 +01:00
humanitiesNerd 78c5566365
gnu: Add python-flask-htmlmin. 
* gnu/packages/python.scm (python-flask-htmlmin, python2-flask-htmlmin): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:55 +01:00
humanitiesNerd 35db2d3cb7
gnu: Add python-htmlmin. 
* gnu/packages/python.scm (python-htmlmin, python2-htmlmin): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:54 +01:00
Marius Bakke 1bbbb0b4af
gnu: diffoscope: Update to 78. 
* gnu/packages/package-management.scm (diffoscope): Update to 78.
 2017-03-13 19:16:19 +01:00
Marius Bakke 8298df96ac
gnu: Add minizip. 
* gnu/packages/compression.scm (minizip): New variable.
 2017-03-13 19:16:19 +01:00
Marius Bakke dd8ecb386c
gnu: notmuch: Update to 0.24. 
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.24.
 2017-03-13 18:21:23 +01:00
Marius Bakke 17fb6fb105
gnu: xf86-video-intel: Update to 2.99.917-4-7e9e92c. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-4-7e9e92c.
 2017-03-13 18:21:23 +01:00
Marius Bakke ca453df7c8
gnu: xf86-video-nouveau: Update to 1.0.14. 
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.14.
 2017-03-13 18:21:22 +01:00
Marius Bakke 4f3dcdd99b
gnu: nss, nss-certs: Update to 3.29.3. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.3.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.3.
 2017-03-13 18:21:22 +01:00
Marius Bakke 87f1c7efc1
gnu: nss: Use 'modify-phases' syntax. 
* gnu/packages/gnuzilla.scm (nss)[arguments]: Use 'modify-phases'.
 2017-03-13 18:21:22 +01:00
Alex Kost 7a4dea524b
gnu: manaplus: Update to 1.7.3.4. 
* gnu/packages/games.scm (manaplus): Update to 1.7.3.4.
 2017-03-13 18:21:10 +03:00
Alex Kost 846344d053
gnu: git-modes: Update to 1.2.4. 
* gnu/packages/emacs.scm (git-modes): Update to 1.2.4.
 2017-03-13 18:21:10 +03:00
Alex Kost 2617050b3b
gnu: magit: Update to 2.10.3. 
* gnu/packages/emacs.scm (magit): Update to 2.10.3.
 2017-03-13 18:21:10 +03:00
Andy Wingo 0216137237
gnu: guile-next: Update to 2.1.8. 
* gnu/packages/guile.scm (guile-next): Update to 2.1.8.
 2017-03-13 12:22:38 +01:00
pjotrp 3288e647e3
gnu: r-hexbin: Update to 1.27.1-1. 
The package tarball was updated in place, resulting in a change in the hash
value.  We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.

* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
 2017-03-13 10:34:00 +01:00
Ludovic Courtès 8f7ea70913
gnu: guile-next: Increase max-silent-time. 
* gnu/packages/guile.scm (guile-next)[properties]: Add 'max-silent-time'.
 2017-03-13 10:30:33 +01:00
Leo Famulari 59bb178cce
gnu: linux-libre@4.4: Update to 4.4.53. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.53.
 2017-03-13 00:56:58 -04:00
Leo Famulari 7bc57e760c
gnu: linux-libre@4.9: Update to 4.9.14. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.14.
 2017-03-13 00:56:58 -04:00
Leo Famulari 49a8c92cbe
gnu: linux-libre: Update to 4.10.2. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.2.
(%linux-libre-hash): Update hash.
 2017-03-13 00:56:58 -04:00
Andy Patterson 108f69c448
gnu: ecl: Update to 16.1.3. 
* gnu/packages/lisp.scm (ecl): Update to 16.1.3.
[arguments]: Use a different method to set the binary used for tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-12 23:47:40 -04:00
Leo Famulari be81133a13
gnu: libical: Fix substitution of path to time zone database. 
Fixes <https://bugs.gnu.org/26039>.

This is a followup to commit 2b193389d2.

* gnu/packages/calendar.scm (arguments): Update 'patch-paths' phase.
 2017-03-12 20:45:46 -04:00
Leo Famulari 3ffaec136f
gnu: Add a tzdata variant for testing purposes. 
* gnu/packages/base.scm (tzdata-2017a): New variable.
* gnu/packages/glib.scm (glib)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
* gnu/packages/statistics.scm (r)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
 2017-03-12 20:45:46 -04:00
Marius Bakke 3f06f43058
gnu: irssi: Update to 1.0.2. 
* gnu/packages/irc.scm (irssi): Update to 1.0.2.
 2017-03-12 19:58:52 +01:00
Marius Bakke e4d34cd0f0
gnu: python@3.5: Fix getentropy() calls on kernels < 3.17. 
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper)[source]: Use it.
 2017-03-12 18:40:56 +01:00
Marius Bakke 343cee8af3
gnu: python@3.5: Update to 3.5.3. 
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper): Update to 3.5.3.
* gnu/packages/patches/python-fix-tests.patch: Adjust patch context.
* gnu/packages/patches/python-3.5-fix-tests.patch: Likewise. Patch one new test.
 2017-03-12 18:40:56 +01:00
Ludovic Courtès 998ac26a1e
gnu: tintin++: Use a mirror:// URI. 
* gnu/packages/games.scm (tintin++)[source]: Use mirror://sourceforge.
 2017-03-12 17:47:25 +01:00
Tobias Geerinckx-Rice 301f12ec92
gnu: offlineimap: Update to 7.0.14. 
* gnu/packages/mail.scm (offlineimap): Update to 7.0.14.
 2017-03-12 15:44:37 +01:00
Leo Famulari 0a6bd107e5
gnu: Add le-certs. 
* gnu/packages/certs.scm (le-certs): New variable.
 2017-03-12 03:23:16 -04:00
Raoul Jean Pierre Bonnal a5935d1946
gnu: Add r-tsne. 
* gnu/packages/bioinformatics.scm (r-tsne): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal 02eec38ee1
gnu: Add r-ranger. 
* gnu/packages/statistics.scm (r-ranger): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal d1906e3147
gnu: Add r-tclust. 
* gnu/packages/statistics.scm (r-tclust): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal 5a200a24eb
gnu: Add r-sn. 
* gnu/packages/statistics.scm (r-sn): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 06085b5bc5
gnu: Add r-numderiv. 
* gnu/packages/statistics.scm (r-numderiv): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal fe68c8a990
gnu: Add r-mnormt. 
* gnu/packages/statistics.scm (r-mnormt): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 362ea0dc29
gnu: Add r-rcppprogress. 
* gnu/packages/statistics.scm (r-rcppprogress): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal aa890f6185
gnu: Add r-caret. 
* gnu/packages/statistics.scm (r-caret): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal ab2ec643c3
gnu: Add r-car. 
* gnu/packages/statistics.scm (r-car): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal a3eb8c8191
gnu: Add r-pbkrtest. 
* gnu/packages/statistics.scm (r-pbkrtest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 51fc7d8c31
gnu: Add r-lme4. 
* gnu/packages/statistics.scm (r-lme4): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal c549864d90
gnu: Add r-nloptr. 
* gnu/packages/statistics.scm (r-nloptr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 49dc1fa5cb
gnu: Add r-quantreg. 
* gnu/packages/statistics.scm (r-quantreg): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 545d0789fc
gnu: Add r-matrixmodels. 
* gnu/packages/statistics.scm (r-matrixmodels): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal aa84100011
gnu: Add r-modelmetrics. 
* gnu/packages/statistics.scm (r-modelmetrics): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 21cfad44c1
gnu: Add r-rcppeigen. 
* gnu/packages/statistics.scm (r-rcppeigen): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 0392f82fd5
gnu: Add r-minqa. 
* gnu/packages/statistics.scm (r-minqa): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:05 +10:00
Danny Milosavljevic 5a717a95b3
gnu: wine: Update to 2.3. 
* gnu/packages/wine.scm (wine): Update to 2.3.
 2017-03-12 00:00:25 +01:00
Thomas Danckaert 4bff300b53
gnu: Add phonon-backend-gstreamer. 
* gnu/packages/kde-frameworks.scm (phonon-backend-gstreamer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 22:23:28 +01:00
Thomas Danckaert 5578c2987e
gnu: phonon: Install Qt extensions. 
* gnu/packages/kde-frameworks.scm (phonon)[arguments]: Add
-DPHONON-INSTALL_QT_EXTENSIONS_INTO_SYSTEM_QT configure flag, and patch the
installation directory.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 22:23:28 +01:00
Sergei Trofimovich 612af7ff66
gnu: re2: Set CXX for cross-compilation. 
* gnu/packages/regex.scm (re2)[arguments]: Specify CXX in #:make-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 22:23:28 +01:00
Mathieu Othacehe e7b9dac7b1
gnu: cuirass: Update to 0.0.1 revision 5. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 22:23:28 +01:00
Leo Famulari c4b15cb54f
gnu: imagemagick: Update to 6.9.7-10. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-10.
 2017-03-11 12:35:57 -05:00
rsiddharth a15638034e
gnu: Add ghc-unexceptionalio. 
* gnu/packages/haskell.scm (ghc-unexceptionalio): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 12:43:36 +01:00
Arun Isaac 55fa53491b
gnu: Add emacs-memoize. 
* gnu/packages/emacs.scm (emacs-memoize): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 12:43:36 +01:00
Leo Famulari c84c8f66f5
gnu: wget: Fix CVE-2017-6508. 
* gnu/packages/patches/wget-CVE-2017-6508.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/wget.scm (wget)[source]: Use it.
 2017-03-10 22:36:58 -05:00
Raoul Jean Pierre Bonnal e08ad76658
gnu: Add r-fnn. 
* gnu/packages/statistics.scm (r-fnn): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:55:28 +10:00
Raoul Jean Pierre Bonnal 7711f61450
gnu: Add r-pbapply. 
* gnu/packages/statistics.scm (r-pbapply): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:51:50 +10:00
Raoul Jean Pierre Bonnal d4cebae286
gnu: Add r-vgam. 
* gnu/packages/statistics.scm (r-vgam): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:47:02 +10:00
Ben Woodcroft fbf45d6ea7
gnu: vsearch: Update to 2.4.2. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2.
 2017-03-11 11:37:15 +10:00
Raoul Jean Pierre Bonnal 036cd0cb8b
gnu: Add r-ape. 
* gnu/packages/bioinformatics.scm (r-ape): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal a409e8b52f
gnu: Add r-fpc. 
* gnu/packages/statistics.scm (r-fpc): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal 5da4f84f1f
gnu: Add r-trimcluster. 
* gnu/packages/statistics.scm (r-trimcluster): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal c0cab38e03
gnu: Add r-robustbase. 
* gnu/packages/statistics.scm (r-robustbase): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal cda0720805
gnu: Add r-deoptimr. 
* gnu/packages/statistics.scm (r-deoptimr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal c962816dc4
gnu: Add r-prabclus. 
* gnu/packages/statistics.scm (r-prabclus): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal 5638e15475
gnu: Add r-mclust. 
* gnu/packages/statistics.scm (r-mclust): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal a1f2668e6c
gnu: Add r-flexmix. 
* gnu/packages/statistics.scm (r-flexmix): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal 1721fb4fe7
gnu: Add r-modeltools. 
* gnu/packages/statistics.scm (r-modeltools): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal d5eca4f9ac
gnu: Add r-diptest. 
* gnu/packages/statistics.scm (r-diptest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Arun Isaac a2fa9c3d1b
gnu: Add obnam. 
* gnu/packages/backup.scm (obnam): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-10 22:06:25 +01:00
Theodoros Foradis b500dc2e83
gnu: icestorm: Replace reference in icebox_vlog. 
* gnu/packages/fpga.scm (icestorm)[arguments]: Add phase
"fix-usr-local" to replace reference to /usr/local/share.
 2017-03-10 21:15:39 +01:00
Danny Milosavljevic 97bede8466
gnu: dub: Update to 1.2.2. 
* gnu/packages/ldc.scm (dub): Update to 1.2.2.
 2017-03-10 19:39:52 +01:00
Ben J. Woodcroft 79f09fa239
gnu: hmmer: Build reproducibly. 
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.
* gnu/packages/bioinformatics.scm (hmmer): Use it.
 2017-03-10 20:31:30 +10:00
Ricardo Wurmus 5ded35d89d
gnu: Add sambamba. 
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New
variables.
 2017-03-10 10:13:59 +01:00
Leo Famulari fc1428d295
gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640]. 
* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
 2017-03-10 01:44:39 -05:00
ng0 5c95465e27
gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'. 
* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet'
and '--with-lmdb'.
[inputs]: Add 'lmdb' and 'kyotocabinet'.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 20:36:44 -05:00
ng0 469609a987
gnu: neomutt: Update to 20170306. 
* gnu/packages/mail.scm (neomutt): Update to 20170306.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 20:36:39 -05:00
ng0 91c8724165
Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'." 
'kyotocabinet' is more current than tokyocabinet in development
and supported in neomutt aswell.

This reverts commit ef91e2b964.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 20:36:32 -05:00
ng0 d4f6f78ea3
gnu: hiawatha: Adjust description. 
* gnu/packages/web.scm (hiawatha)[description]: Adjust it.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 19:42:16 -05:00
ng0 f2a7ce5033
gnu: Add font-tamzen. 
* gnu/packages/fonts.scm (font-tamzen): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 19:23:07 -05:00
Tobias Geerinckx-Rice ff797172b0
gnu: btrfs-progs/static: Correct description. 
* gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct
name of the btrfs-progs package and @command{} mark-up.
 2017-03-09 23:55:57 +01:00
Tobias Geerinckx-Rice 5595d4c1fd
gnu: btrfs-progs: Update to 4.10. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
 2017-03-09 23:55:54 +01:00
Tobias Geerinckx-Rice ab84c13ff0
gnu: ibus-anthy: Update to 1.5.9. 
* gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
 2017-03-09 22:49:38 +01:00
Tobias Geerinckx-Rice 2704f5be09
gnu: ibus: Update to 1.5.15. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.15.
 2017-03-09 22:49:38 +01:00
Tobias Geerinckx-Rice 1b34a47da0
gnu: pius: Update to 2.2.4. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.4.
 2017-03-09 22:49:37 +01:00
Tobias Geerinckx-Rice 50b398298f
gnu: youtube-dl: Update to 2017.03.07. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
 2017-03-09 22:49:37 +01:00
Arun Isaac d9e94c6170
gnu: graphicsmagick: Build with 16 bit quantum depth. 
Octave requires graphicsmagick to be built with 16 bit quantum depth.

* gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add
"--with-quantum-depth=16" and "--enable-quantum-library-names"
to #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-09 16:46:12 -05:00
Arun Isaac 9f91340166
gnu: octave: Build with curl and graphicsmagick. 
* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-09 16:46:09 -05:00
Leo Famulari baa467762c
gnu: glib: Avoid failing test caused by changes in the time zone database. 
* gnu/packages/glib.scm (glib)[arguments]: Skip a failing test in
'disable-failing-tests' phase.
 2017-03-09 15:20:01 -05:00
Leo Famulari 24c72670d9
gnu: glib: Update to 2.50.3. 
* gnu/packages/glib.scm (glib): Update to 2.50.3.
 2017-03-09 15:19:57 -05:00
Marius Bakke 1f28b3195a
gnu: xf86-input-libinput: Update to 0.25.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
 2017-03-09 18:13:22 +01:00
Arun Isaac b6b2ca5d19
gnu: Add python2-larch. 
* gnu/packages/python.scm (python2-larch): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 17:11:03 +01:00
Arun Isaac c220f0b474
gnu: Add python2-tracing. 
* gnu/packages/python.scm (python2-tracing): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 17:09:17 +01:00
Arun Isaac 77e9941160
gnu: Add python2-ttystatus. 
* gnu/packages/python.scm (python2-ttystatus): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 16:53:23 +01:00
Arun Isaac 33e9490ca1
gnu: Add python2-cliapp. 
* gnu/packages/python.scm (python2-cliapp): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 16:52:53 +01:00
Marius Bakke 6741676911
gnu: python-numpy-documentation: Use full git commit hash in submodule. 
* gnu/packages/python.scm (python-numpy-documentation,
python2-numpy-documentation)[native-inputs]: Update hash of
SCIPY-SPHINX-THEME. Fix indentation of a line.
 2017-03-09 16:39:09 +01:00
Marius Bakke 63d62305c3
gnu: Remove obsolete numpy comment. 
* gnu/packages/python.scm: Remove comment.
 2017-03-09 16:39:08 +01:00
Marius Bakke ed6a21b45f
gnu: inetutils: Disable parallel tests. 
* gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
 2017-03-09 16:39:08 +01:00
Marius Bakke ce79279d34
gnu: python-pandas: Really fix build on 32bit. 
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion
with same-named test.
 2017-03-09 16:39:08 +01:00
Ludovic Courtès e90e0fad1b
Merge branch 'master' into core-updates 2017-03-09 16:35:41 +01:00
Thomas Danckaert 0da4f3659a
gnu: Add rsnapshot. 
* gnu/packages/backup.scm (rsnapshot): New variable.
 2017-03-09 12:29:23 +01:00
Mark H Weaver 7b1866d783
gnu: python-fake-factory: Add back missing patch file. 
This reverts the removal of "python-fake-factory-fix-build-32bit.patch"
by commit ce7911ddae.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-09 06:08:18 -05:00
Leo Famulari 483188b76e
gnu: inetutils: Set the $localstatedir. 
This is a followup to commit 6f5d28f9d0.

* gnu/packages/admin.scm (inetutils)[arguments]: Pass
'--localstatedir=/var' to #:configure-flags.
 2017-03-09 05:00:29 -05:00
Mark H Weaver 1fa8a51ecc
gnu: icecat: Add fixes from upstream Firefox ESR 45.8.0. 
Includes fixes for CVE-2017-5398, CVE-2017-5400, CVE-2017-5401, CVE-2017-5402,
CVE-2017-5404, CVE-2017-5405, CVE-2017-5407, CVE-2017-5408, CVE-2017-5409, and
CVE-2017-5410.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr45 repository.
 2017-03-09 03:58:29 -05:00
Mark H Weaver c9b631aef4
gnu: icecat: Update to 45.7.0-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 45.7.0-gnu1.  Remove patches
included in 45.7.0.
 2017-03-09 03:58:27 -05:00
Ricardo Wurmus f2ac937924
gnu: r: Remove obsolete configure flags. 
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
 2017-03-09 07:38:24 +01:00
Ricardo Wurmus f7db12022c
gnu: r: Update to 3.3.3. 
* gnu/packages/statistics.scm (r): Update to 3.3.3.
 2017-03-09 07:38:24 +01:00
Leo Famulari 8ea0700d23
gnu: tzdata: Update to 2017a. 
* gnu/packages/base.scm (tzdata): Update to 2017a.
 2017-03-08 18:08:19 -05:00
Roel Janssen c49840f8d4
gnu: Add lensfun. 
* gnu/packages/photo.scm (lensfun): New variable.
 2017-03-08 23:49:24 +01:00
Ludovic Courtès 64f34aefe7
gnu: Add guile2.2-haunt. 
* gnu/packages/guile.scm (guile2.2-haunt): New variable.
 2017-03-08 23:42:53 +01:00
Ludovic Courtès 517fce6327
gnu: Add guile2.2-reader. 
* gnu/packages/guile.scm (guile2.2-reader): New variable.
 2017-03-08 23:42:53 +01:00
Ludovic Courtès 77aa0887e1
gnu: guile-reader: Update to 0.6.2. 
* gnu/packages/guile.scm (guile-reader): Update to 0.6.2.
[arguments]: Remove.
 2017-03-08 23:42:53 +01:00
Ludovic Courtès beb1e8067d
gnu: Remove unneeded imports. 
* gnu/packages/backup.scm: Remove unneeded (guix build utils) import.
* gnu/packages/finance.scm: Likewise.
 2017-03-08 23:42:52 +01:00
Maxim Cournoyer 6f5d28f9d0
gnu: inetutils: Enable tests. 
* gnu/packages/admin.scm (inetutils)[arguments]: Remove '#:tests? #f'
and #:configure-flags.
[native-inputs]: Add net-tools.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-08 13:11:59 -05:00
Marius Bakke b03ee02f0d
gnu: python-pandas: Fix build on 32-bit. 
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
 2017-03-08 18:04:23 +01:00
Marius Bakke ce7911ddae
gnu: Add python-faker. 
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust
paths. Also rename to ...
* gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-faker, python2-faker): New variables.
(python-fake-factory)[properties]: Superseded by PYTHON-FAKER.
(python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER.
(python-orator, python2-orator)[propagated-inputs]: Replace
PYTHON-FAKE-FACTORY with PYTHON-FAKER.
 2017-03-08 18:00:43 +01:00
Thomas Danckaert 1eaaea41e5
gnu: python-matplotlib-documentation: Fix build. 
* gnu/packages/python.scm (python-matplotlib-documentation)[native-inputs]:
Add python-mock and graphviz.
[arguments]: Use separate build and install phases; correctly set latex paper size.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-08 17:39:00 +01:00
Marius Bakke 9c974c9366
gnu: iperf: Update to 3.1.7. 
* gnu/packages/networking.scm (iperf): Update to 3.1.7.
 2017-03-08 17:37:51 +01:00
Marius Bakke 3a38cf2dfd
gnu: libinput: Update to 1.6.3. 
* gnu/packages/freedesktop.scm (libinput, libinput-minimal): Update to 1.6.3.
 2017-03-08 17:18:11 +01:00
Marius Bakke f095109e2c
gnu: weston: Update to 2.0.0. 
* gnu/packages/freedesktop.scm (weston): Update to 2.0.0.
 2017-03-08 16:40:12 +01:00
Marius Bakke 20289af368
gnu: wayland: Update to 1.13.0. 
* gnu/packages/freedesktop.scm (wayland): Update to 1.13.0.
 2017-03-08 16:39:10 +01:00
Marius Bakke fe5790e1e0
gnu: poppler: Update to 0.52.0. 
* gnu/packages/pdf.scm (poppler): Update to 0.52.0.
 2017-03-08 16:36:22 +01:00
Marius Bakke 946937e36d
gnu: pulseaudio: Update to 10.0. 
* gnu/packages/pulseaudio.scm (pulseaudio): Update to 10.0.
[inputs]: Remove JSON-C.
 2017-03-08 16:17:24 +01:00
Ricardo Wurmus beaa026aa7
gnu: r: Fix more reproducibility problems. 
* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the
build system that need special treatment for reproducibility.
 2017-03-08 12:32:49 +01:00
Ricardo Wurmus 745c687be3
gnu: r: Fix syntax for INSTALL_OPTS. 
This is a follow-up to commit 4621acfd82.

* gnu/packages/statistics.scm (r)[arguments]: Ensure that
"--built-timestamp" appears on the same line as the other INSTALL_OPTS.
 2017-03-08 12:32:49 +01:00
Leo Famulari da79e82b14
gnu: gtk+: Build GTK+ with its own xorg-server package. 
This will allow us to update xorg-server directly on the master branch.

* gnu/packages/xorg.scm (xorg-server-1.19.2): New variable.
* gnu/packages/gtk.scm (gtk+) [native-inputs]: Use xorg-server-1.19.2 instead of
xorg-server.
[arguments]: Add xorg-server-1.19.2 to #:disallowed-references.
 2017-03-08 03:52:03 -05:00
Leo Famulari 9a91b00fd0
gnu: xorg-server: Update to 1.19.2 [fixes CVE-2017-2624]. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.19.2.
[native-inputs]: Add font-util, libtool, autoconf, and automake.
[arguments]: Add 'bootstrap' phase.
 2017-03-08 03:52:03 -05:00
Troy Sankey e3ff83834b
gnu: git: force GIT_EXEC_PATH to be single-entry 
* gnu/packages/version-control.scm (git)[native-search-paths](separator):
New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-08 09:45:52 +01:00
Leo Famulari af50d389c5
gnu: grub: Fix build failure with recent flex. 
* gnu/packages/bootloaders.scm (grub)[native-inputs]: Use flex-2.6.1.
 2017-03-08 00:07:11 -05:00
Leo Famulari aac67f210d
gnu: Add flex-2.6.1. 
* gnu/packages/flex.scm (flex-2.6.1): New variable.
 2017-03-08 00:07:07 -05:00
Ludovic Courtès 6c5b56f9fa
gnu: bash: Use the bootstrap Guile in 'url-fetch/reset-patch-level'. 
Fixes <http://bugs.gnu.org/25775>.
Reported by Sirgazil, Ricardo Wurmus, Andy Wingo, and others.

* guix/download.scm (in-band-download): Always use GUILE.  This reverts
9f05908fb1.
* gnu/packages/bash.scm (url-fetch/reset-patch-level): Remove #:guile.
Pass %BOOTSTRAP-GUILE as #:guile to 'url-fetch'.  Remove #:guile-for-build
argument in 'gexp->derivation' call.
 2017-03-07 23:58:08 +01:00
Thomas Danckaert faa65e2735
gnu: kdevelop: Upgrade to 5.0.4. 
* gnu/packages/kde.scm (kdevelop, kdevplatform): Upgrade to 5.0.4.
(kdevplatform)[source]: Use kde mirror instead of github.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-07 23:21:59 +01:00
Marius Bakke 9bb766e70d
gnu: pcre2: Update to 10.23. 
* gnu/packages/pcre.scm (pcre2): Update to 10.23.
[source]: Remove patch.
[arguments]: Add phase to substitute /bin/echo reference.
* gnu/packages/patches/pcre2-CVE-2016-3191.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-07 23:21:22 +01:00
Leo Famulari 3391e2a078
gnu: khal: Update to 0.9.3. 
* gnu/packages/calendar.scm (khal): Update to 0.9.3.
[native-inputs]: Use python-pytest-2.9.2.
 2017-03-07 16:37:21 -05:00
Leo Famulari f11275c9e5
gnu: gnupg: Update to 2.1.19. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19.
[arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase.
Add '--enable-gnupg-builddir-envvar' to #:configure-flags.
[source]: Add 'gnupg-2.1-fix-Y2038-test-failure.patch'.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-07 16:37:17 -05:00
Ricardo Wurmus c1029f86e3
gnu: Add emacs-yasnippet. 
* gnu/packages/emacs.scm (emacs-yasnippet): New variable.
 2017-03-07 19:44:49 +01:00
Sergei Trofimovich 605fec783f
gnu: Add basic support for "alpha-linux" systems. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
"/lib/ld-linux.so.2" as "alpha-linux" ld.so.
* gnu/packages/linux.scm (system->linux-architecture): Add "alpha" arch.

Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-07 18:20:33 +01:00
Pjotr Prins d6abd094fc
gnu: python-rpy2: Propagate python2-singledispatch. 
* gnu/packages/python.scm (python-rp2)[native-inputs]: Rename to...
[propagated-inputs]: ... this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-07 18:19:51 +01:00
Ricardo Wurmus 9296684713
gnu: java-xz: Update to 1.6. 
* gnu/packages/java.scm (java-xz): Update to 1.6.
 2017-03-07 17:27:30 +01:00
Maxim Cournoyer af12687522
gnu: guile-lib: Update to 0.2.5 
The build was broken since the URL of version 0.2.3 was changed. The archive
was moved into an "old" subdirectory of the original location.

* gnu/packages/guile.scm (guile-lib): Update to 0.2.5.
[make-flags]: Add GUILE_AUTO_COMPILE to prevent guild errors.
[phases]: Remove 'check replacement since it is no longer needed.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-07 16:44:02 +01:00
Nicolas Goaziou eaa72e3a11
gnu: asymptote: Update to 2.40. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.40.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-03-07 20:02:04 +08:00
宋文武 c402743579
gnu: Add blind. 
* gnu/packages/suckless.scm (blind): New package.
 2017-03-07 19:41:23 +08:00
Mekeor Melire 45321beb7d
gnu: surf: Add 'dmenu' and 'xprop' to 'inputs'. 
'dmenu' and 'xprop' are necessary to open a new URL in surf.

* gnu/packages/suckless.scm (surf)[inputs]: Add dmenu and xprop.
[arguments]: Add 'set-dmenu-and-xprop-file-name' phase to patch the
paths to the 'dmenu' and 'xprop' binaries in surf's configuration file.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-07 00:29:14 -05:00
Thomas Danckaert ba062b3ec4
gnu: python-colorspacious: Run tests. 
* gnu/packages/python.scm (python-colorspacious,
python2-colorspacious)[native-inputs]: Add python-nose.
[arguments]: Add custom 'check phase which runs nosetests.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:51:23 +01:00
Marius Bakke 46d6219d41
gnu: rofi: Fix test failure. 
* gnu/packages/xdisorg.scm (rofi)[arguments]: Disable parallel tests.
 2017-03-06 23:38:48 +01:00
Thomas Danckaert 5eefa50abd
gnu: Remove python-sphinx-1.2.3. 
* gnu/packages/python.scm (python-sphinx-1.2.3, python2-sphinx-1.2.3): Remove variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:28:10 +01:00
Marius Bakke 6cb7477699
gnu: python-statsmodels: Update to 0.8.0. 
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
 2017-03-06 23:24:11 +01:00
Marius Bakke 8e08604814
gnu: python-pandas: Update to 0.19.2. 
* gnu/packages/python.scm (python-pandas, python2-pandas): Update to 0.19.2.
[source]: Use 'pypi-uri'.
 2017-03-06 23:24:03 +01:00
Thomas Danckaert 4535a93adb
gnu: python-matplotlib: Update to 2.0.0. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to
2.0.0.
[source]: Remove Tk backend patch, use Github instead of Sourceforge.
[outputs]: Remove "doc" output.
[inputs]: Add python-pyqt.
[propagated-inputs]: Add python-cycler.
[native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo.
(python2-matplotlib)[native-inputs]: Add python2-functools32 and
python2-subprocess32.
(python-matplotlib-documentation, python2-matplotlib-documentation): New
variables.
* gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:22:22 +01:00
Marius Bakke 550bd98b41
gnu: Add python2-subprocess32. 
* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-06 23:21:34 +01:00
Thomas Danckaert 7ccb71e0ea
gnu: python-numpy: Update to 1.12.0. 
* gnu/packages/python.scm (python-numpy): Update to 1.12.0.
  [source]: Use github instead of sourceforge.
  [native-inputs]: Add python-cython.

  To simplify the handling of dependency cycles (numpy documentation depends
  on matplotlib, which depends on numpy), we split out the documentation into
  a separate package:
  (python-numpy-bootstrap, python2-numpy-bootstrap): Remove variables.
  (python-numpy-documentation, python2-numpy-documentation): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:21:06 +01:00
Leo Famulari 14807141e5
Revert "gnu: gnupg: Update to 2.1.19." 
This reverts commit 07302d1ab4.

GnuPG 2.1.19 fails to build on armhf-linux and i686-linux:

<https://bugs.gnupg.org/gnupg/issue2988>
 2017-03-06 17:11:19 -05:00
Leo Famulari e20784e65e
gnu: texlive: Fix CVE-2016-10243. 
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (texlive-texmf-src): Use it.
 2017-03-06 16:47:37 -05:00
Ricardo Wurmus 093c6f8bc7
gnu: mesa: Build LLVM Gallium drivers. 
Fixes <https://bugs.gnu.org/25953>.

* gnu/packages/gl.scm (mesa)[inputs]: Add llvm.
[arguments]: Build LLVM Gallium drivers.
 2017-03-06 22:36:38 +01:00
Leo Famulari e2948ef5c1
gnu: libressl: Update to 2.5.1. 
* gnu/packages/tls.scm (libressl): Update to 2.5.1.
 2017-03-06 16:31:29 -05:00
Nicolas Goaziou 5f8ca95eb5
gnu: giac-xcas: Update to 1.2.3-25. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-25.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 14:49:58 +01:00
Troy Sankey 5b1f31ffcf
gnu: python-setuptools-scm: Update to 1.15.0. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 1.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 13:55:37 +01:00
Marius Bakke c0446791bd
gnu: python2-backports-shutil-get-terminal-size: Enable tests. 
* gnu/packages/python.scm
(python2-backports-shutil-get-terminal-size)[arguments]: Replace 'check' phase
with custom command.
[native-inputs]: Add PYTHON2-PYTEST.
 2017-03-06 13:22:51 +01:00
Ricardo Wurmus d701f8bdb2
gnu: libosinfo: Update to 1.0.0. 
* gnu/packages/qemu.scm (libosinfo): Update to 1.0.0.
[source]: Use new release location as fedorahosted.org is defunct.
[arguments]: Replace phase "copy-ids" with configure flags; add phase
"disable-broken-test" to disable the "isodetect" test.
[native-inputs]: Update origin for "pci.ids" and "usb.ids".
 2017-03-06 13:04:26 +01:00
Efraim Flashner b773e9b005
gnu: gcc: Force Aarch64 to use /lib. 
* gnu/packages/gcc.scm (gcc)[arguments]: On aarch64 replace force libdir
to be lib and not lib64.
 2017-03-06 11:34:46 +02:00
Thomas Danckaert fb25d348dd
gnu: python-ipython: Update to 5.2.2. 
* gnu/packages/python.scm (python-ipython): Update to 5.2.2.
[propagated-inputs]: Add pyhon-prompt-toolkit and python-nbformat.
(python2-ipython) [arguments]: Enable tests.
[propagated-inputs]: Add python2-backports-shutil-get-terminal-size.
[native-inputs]: Add graphviz.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 04:35:00 +01:00
Thomas Danckaert 350932536a
gnu: python-scipy: Update to 0.18.1. 
* gnu/packages/python.scm (python-scipy): Update to 0.18.1.
[source]: Use github instead of sourceforge.
[native-inputs]: Add python-cython.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:35:26 +01:00
Thomas Danckaert b320f7bf06
gnu: python-testpath: Fix library location for python2 version. 
* gnu/packages/python.scm (python-testpath)[arguments]: Install module in the proper
"lib/pythonx.y" location for all Python versions.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:33:39 +01:00
Thomas Danckaert 2aa6d3aeeb
gnu: Add python-colorspacious. 
* gnu/packages/python.scm (python-colorspacious, python2-colorspacious): New
variables.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:24:29 +01:00
Thomas Danckaert ec07421332
gnu: Add python2-backports-shutil-get-terminal-size. 
* gnu/packages/python.scm (python2-backports-shutil-get-terminal-size): New
variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:22:30 +01:00
Leo Famulari 7bc19c9205
gnu: xmlto: Fix source URL. 
Works around <https://bugs.gnu.org/25989>.

* gnu/packages/xml.scm (xmlto)[source]: Update URL.
[file-name]: New field.
 2017-03-05 20:19:18 -05:00
ng0 33c93ea33e
gnu: rxvt-unicode: Add '.desktop' files. 
This fixes <https://bugs.gnu.org/23106>.

* gnu/packages/xdisorg.scm (rxvt-unicode)[arguments]: Add
'install-desktop-urxvt' and 'install-desktop-urxvtc' phases.
 2017-03-05 16:25:39 -05:00
Nicolas Goaziou 5af1a38133
gnu: wireshark: Update to 2.2.5. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.5.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-05 15:45:28 -05:00
Ricardo Wurmus 5f0c649683
gnu: ardour: Enable tests. 
* gnu/packages/audio.scm (ardour)[arguments]: Enable unit tests.
 2017-03-05 19:43:48 +01:00
Ricardo Wurmus ba5c85679d
gnu: ardour: Generate freedesktop files. 
* gnu/packages/audio.scm (ardour)[arguments]: Add "--freedesktop" configure
flag.
[native-inputs]: Add itstool and gettext-minimal.
 2017-03-05 19:43:48 +01:00
Ricardo Wurmus 461160c530
gnu: ardour: Update to 5.8. 
* gnu/packages/audio.scm (ardour): Update to 5.8.
 2017-03-05 19:43:48 +01:00
Kei Kebreau 2041f9019e
gnu: mp3splt: Update to 2.6.2. 
* gnu/packages/mp3.scm (mp3splt): Update to 2.6.2.
[native-inputs]: Add pkg-config.
 2017-03-05 13:12:03 -05:00
Kei Kebreau 67a8298c09
gnu: libmp3splt: Update to 0.9.2. 
* gnu/packages/mp3.scm (libmp3splt): Update to 0.9.2.
 2017-03-05 12:53:27 -05:00
Danny Milosavljevic 8ea4248214
gnu: Add binutils-vc4. 
* gnu/packages/embedded.scm (binutils-vc4): New variable.
 2017-03-05 13:49:12 +01:00
Efraim Flashner 3df18d6144
gnu: obs: Update to 18.0.0. 
* gnu/packages/video.scm (obs): Update to 18.0.0.
 2017-03-05 12:19:33 +02:00
Leo Famulari a78e0bda99
gnu: filezilla: Update to 3.24.1. 
* gnu/packages/ftp.scm (filezilla): Update to 3.24.1.
[arguments]: Add '--disable-autoupdatecheck' to #:configure-flags.
 2017-03-04 23:15:06 -05:00
rennes 0bc26f66c7
gnu: Add filezilla. 
* gnu/packages/ftp.scm (filezilla): New variable.
 2017-03-04 23:15:06 -05:00
rennes afa595350b
gnu: Add libfilezilla. 
* gnu/packages/ftp.scm (libfilezilla): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-04 23:15:05 -05:00
rennes 40c611a41d
gnu: wxwidgets: Fix for Filezilla client. 
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-04 23:15:01 -05:00
Kei Kebreau 9f86202ba1
gnu: starfighter: Update to 1.7. 
* gnu/packages/games.scm (starfighter): Update to 1.7.
[arguments]: Remove obsolete make flags. Re-enable configure and test
phases.
 2017-03-04 22:24:17 -05:00
Leo Famulari 07302d1ab4
gnu: gnupg: Update to 2.1.19. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19.
[arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase.
Add '--enable-gnupg-builddir-envvar' to #:configure-flags.
 2017-03-04 21:04:46 -05:00
Leo Famulari c35745edc4
gnu: kio: Fix CVE-2017-6410. 
* gnu/packages/patches/kio-CVE-2017-6410.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kio)[source]: Use it.
 2017-03-04 18:35:17 -05:00
Ben Woodcroft 5e0535a7e6
gnu: ruby-coderay: Update to 1.1.1. 
* gnu/packages/ruby.scm (ruby-coderay): Update to 1.1.1.
 2017-03-05 09:17:12 +10:00
Ben Woodcroft f1710d8da0
gnu: ruby-pry: Update to 0.10.4. 
* gnu/packages/ruby.scm (ruby-pry): Update to 0.10.4.
 2017-03-05 09:15:00 +10:00
ng0 d0c16adb19
gnu: gitolite: Fix shebangs in hooks. 
Fixes <https://bugs.gnu.org/25957>.

* gnu/packages/version-control.scm (gitolite)[arguments]: Add 'fix-hooks-shebangs'
phase to fix references to '/usr/bin/perl'.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-04 17:51:04 -05:00
ng0 34ba7cd4eb
gnu: gitolite: Update to 3.6.6. 
* gnu/packages/version-control.scm (gitolite): Update to 3.6.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-04 17:51:04 -05:00
Roel Janssen 52c14bb6ec
gnu: pugixml: Build relocatable library. 
* gnu/packages/xml.scm (pugixml): Add "-shared -fPIC" to ensure the
library is relocatable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-04 16:30:36 -05:00
ng0 3190c307f9
gnu: Add hiawatha. 
* gnu/packages/web.scm (hiawatha): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-04 14:18:38 -05:00
ng0 8852273868
gnu: Add mbedtls-apache. 
* gnu/packages/tls.scm (mbedtls-apache): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-04 14:18:24 -05:00
Danny Milosavljevic 5bbf31ccba
gnu: stellarium: Use modular Qt. 
* gnu/packages/astronomy.scm (stellarium)[inputs]: Remove qt.
Add qtbase, qtmultimedia, qtscript, qtserialport.
[native-inputs]: Add qtbase, qttools.
 2017-03-04 11:32:53 +01:00
宋文武 b2e3d59c50
gnu: glulxe: Update to 0.5.4. 
* gnu/packages/games.scm (glulxe): Update to 0.5.4.
[license]: Change to 'expat'.
 2017-03-04 17:05:49 +08:00
Leo Famulari 74a2b2b439
Revert "gnu: xorg-server: Update to 1.19.2 [fixes CVE-2017-2624]." 
This release was not properly bootstrapped:

https://lists.x.org/archives/xorg-announce/2017-March/002780.html

We will wait for 1.19.3 before updating.

This reverts commit 848d643874.
 2017-03-03 14:34:42 -05:00
Leo Famulari 5eda3d824c
gnu: libice: Build with libbsd [fixes CVE-2017-2626]. 
* gnu/packages/xorg.scm (libice)[inputs]: Add libbsd.
 2017-03-03 14:12:31 -05:00
Leo Famulari fe6db6ecff
gnu: libxdmcp: Build with libbsd [fixes CVE-2017-2625]. 
* gnu/packages/xorg.scm (libxdmcp)[inputs]: Add libbsd.
 2017-03-03 14:12:31 -05:00
Leo Famulari 848d643874
gnu: xorg-server: Update to 1.19.2 [fixes CVE-2017-2624]. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.19.2.
 2017-03-03 14:12:31 -05:00
Julien Lepiller 60a5080675
gnu: php: Update to 7.1.2. 
* gnu/packages/php.scm (php): Update to 7.1.2.
[inputs]: Add gnutls.
[arguments]: Disable more tests in 'prepare-tests' phase.
(gd-for-php): Remove variable.
* gnu/packages/patches/gd-fix-chunk-size-on-boundaries.patch,
gnu/packages/patches/gd-fix-truecolor-format-correction.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-03 14:12:31 -05:00
Julien Lepiller e8293ef12c
gnu: gd: Fix an issue with XBM decoding. 
* gnu/packages/patches/gd-php-73968-Fix-109-XBM-reading.patch: New file.
* gnu/local.scm (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-03 14:12:30 -05:00
Andreas Enge 21abf092a4
gnu: arb: Update to 2.10.0. 
* gnu/packages/algebra.scm (arb): Update to 2.10.0.
* gnu/packages/patches/arb-ldconfig.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2017-03-03 18:33:19 +01:00
Marius Bakke 169a438c0f
gnu: acpid: Update to 2.0.28. 
* gnu/packages/linux.scm (acpid): Update to 2.0.28.
 2017-03-03 17:57:11 +01:00
Marius Bakke 3b175eab84
gnu: nss, nss-certs: Update to 3.29.2. 
* gnu/packages/certs.scm (nss-certs): Update to 3.29.2.
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.2.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to context changes.
 2017-03-03 17:26:24 +01:00
Leo Famulari 728f36202d
gnu: nspr: Update to 4.13.1. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.13.1.
 2017-03-03 17:23:04 +01:00
Marius Bakke aa6738ddb6
gnu: jasper: Update to 2.0.12. 
* gnu/packages/image.scm (jasper): Update to 2.0.12.
 2017-03-03 17:11:02 +01:00
Marius Bakke 608afe067e
gnu: maim: Update to 4.4.61. 
* gnu/packages/xdisorg.scm (maim): Update to 4.4.61.
 2017-03-03 17:11:00 +01:00
Marius Bakke 3f98071ac5
Merge branch 'python-tests' 2017-03-03 16:55:43 +01:00
Andreas Enge 0a77fdf4b8
gp2c: Update to 0.10.0. 
* gnu/packages/algebra.scm (gp2c): Update to 0.10.0.
 2017-03-03 16:10:23 +01:00
Andreas Enge aada6f371e
pari-gp: Update to 2.9.1. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.9.1.
 2017-03-03 16:10:23 +01:00
Tobias Geerinckx-Rice 42a3293a64
gnu: tor: Update to 0.2.9.10. 
* gnu/packages/tor.scm (tor): Update to 0.2.9.10.
 2017-03-03 14:25:52 +01:00
Danny Milosavljevic 6b2afac9d5
gnu: stellarium: Fix package formatting. 
* gnu/packages/astronomy.scm (stellarium): Fix package formatting.
 2017-03-03 11:29:41 +01:00
Alex Vong 92ae98e2a0
gnu: mupdf: Fix CVE-2017-{5896,5991}. 
* gnu/packages/patches/mupdf-CVE-2017-5896.patch,
gnu/packages/patches/mupdf-CVE-2017-5991.patch: New files.
* gnu/packages/pdf.scm (mupdf/fixed)[source]: Add patches.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-03 04:47:52 -05:00
Leo Famulari 89d42ac17c
gnu: certbot, python-acme: Update to 0.12.0. 
* gnu/packages/tls.scm (python-acme, python2-acme): Update to 0.12.0.
(certbot): Update to 0.12.0.
 2017-03-03 04:29:55 -05:00
Leo Famulari da5db9880e
gnu: python-requests: Update to 2.13.0. 
* gnu/packages/python.scm (python-requests, python2-requests): Update to 2.13.0.
 2017-03-03 04:29:55 -05:00
Ben Woodcroft 84e36a562b
gnu: googletest: Update to 1.8.0. 
* gnu/packages/check.scm (googletest): Update to 1.8.0.
[build-system]: Use cmake-build-system.
[arguments]: Remove field.
[native-inputs]: Remove autoconf, automake, libtool.
 2017-03-03 17:57:23 +10:00
Tobias Geerinckx-Rice 488a373451
gnu: libseccomp: Update to 2.3.2. 
* gnu/packages/linux.scm (libseccomp): Update to 2.3.2.
 2017-03-03 05:29:12 +01:00
Tobias Geerinckx-Rice 95b80db637
gnu: cmark: Update to 0.27.1. 
* gnu/packages/markdown.scm (cmark): Update to 0.27.1.
 2017-03-03 02:06:57 +01:00
Tobias Geerinckx-Rice 1e5c056ca1
gnu: catimg: Update to 2.2.2. 
* gnu/packages/image-viewers.scm (catimg): Update to 2.2.2.
[arguments]: Add ‘-DMAN_OUTPUT_PATH’ to the cmake arguments.
 2017-03-03 02:04:26 +01:00
Tobias Geerinckx-Rice 0f9bb61bfa
gnu: moka-icon-theme: Update to 5.3.5. 
* gnu/packages/gnome.scm (moka-icon-theme): Update to 5.3.5.
 2017-03-03 00:59:31 +01:00
Tobias Geerinckx-Rice c41802401c
gnu: arc-icon-theme: Update to 20161122. 
* gnu/packages/gnome.scm (arc-icon-theme): Update to 20161122.
 2017-03-03 00:59:31 +01:00
Tobias Geerinckx-Rice 7967efc18c
gnu: arc-theme: Update to 20170302. 
* gnu/packages/gnome.scm (arc-theme): Update to 20170302.
 2017-03-03 00:59:31 +01:00