ea584538ac
gnu: node: Use unbundled dependencies.
...
* gnu/packages/node.scm (node)[inputs]: Add c-ares and http-parser.
[arguments]: Add configure flags for using system libraries.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-23 18:27:35 +02:00
1fdb883082
gnu: node: Update to 7.10.0.
...
* gnu/packages/node.scm (node): Update to 7.10.0.
(node)[arguments]: Disabled more tests.
* gnu/packages/patches/node-9077.patch: Delete incompatible patch file.
Recreate patch file from node pull request 9077.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-23 17:55:59 +02:00
a7a7186ce6
gnu: Add MuseScore.
...
* gnu/packages/music.scm (musescore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-23 13:35:44 +02:00
b1d32ec0e2
gnu: emacs-auctex: Add arguments to work with new `install' phase.
...
* gnu/packages/emacs.scm (emacs-auctex)[arguments]: Add #:include and
#:exclude arguments.
2017-05-23 06:12:49 +05:30
e8cefe1103
gnu: emacs-slime: Add arguments to work with new `install' phase.
...
* gnu/packages/emacs.scm (emacs-slime)[arguments]: Add #:include and #:exclude
arguments.
2017-05-23 06:12:49 +05:30
b608765a2c
gnu: diamond: Update to 0.9.1.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.1.
2017-05-22 21:17:41 +01:00
9117448e76
gnu: Remove GCJ.
...
* gnu/packages/patches/gcj-arm-mode.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Delete it.
* gnu/packages/gcc.scm (javac.in, gcj, ecj-bootstrap): Remove variables.
2017-05-22 18:56:35 +02:00
e441fc564b
gnu: ant: Implement in terms of ant/java8.
...
* gnu/packages/java.scm (ant): Inherit from ant/java8.
2017-05-22 18:56:35 +02:00
8bbd040840
gnu: Add ant/java8.
...
* gnu/packages/java.scm (ant/java8): New variable.
2017-05-22 18:56:35 +02:00
5c7952fbf4
gnu: ant: Move after bootstrap packages.
...
* gnu/packages/java.scm (ant): Move package.
2017-05-22 18:56:35 +02:00
e7a5d73ea9
gnu: ant: Delete bundled jars.
...
* gnu/packages/java.scm (ant)[source]: Delete bundled jars in a snippet.
2017-05-22 18:56:35 +02:00
fded0c69dd
gnu: ant: Inherit from ant-bootstrap.
...
* gnu/packages/java.scm (ant)[build-system]
[home-page][synopsis][description][license]: Remove fields.
[arguments]: Adapt arguments of ant-bootstrap package.
2017-05-22 18:56:35 +02:00
fc6e27271d
gnu: clojure: Move below bootstrap packages.
...
* gnu/packages/java.scm (clojure): Move package.
2017-05-22 18:56:34 +02:00
5490480c42
gnu: java-swt: Move below the bootstrap packages.
...
* gnu/packages/java.scm (java-swt): Move the package.
2017-05-22 18:56:34 +02:00
e2098e2d58
gnu: icedtea-7: Use icedtea-6 for bootstrapping.
...
* gnu/packages/java.scm (icedtea-7)[source]: Remove Makefile.in patch to link
with GCJ libs.
[arguments]: Remove (ice-9 rdelim) module; adjust configure flags; do not add
GCJ headers to CPATH in build phase "set-additional-paths".
[native-inputs]: Remove gcj and ant; add icedtea-6 and ant-bootstrap. Remove
autoconf and automake.
(icedtea-8)[native-inputs]: Delete "icedtea" from the inherited inputs, not
"gcj".
2017-05-22 18:56:34 +02:00
9841931668
gnu: Add icedtea-6.
...
* gnu/packages/java.scm (icedtea-6): New variable.
2017-05-22 18:56:34 +02:00
1bf56c7233
gnu: Add ecj-javac-on-jamvm-wrapper-final.
...
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper-final): New variable.
2017-05-22 18:56:34 +02:00
8c6091e3a6
gnu: Add jamvm.
...
* gnu/packages/java.scm (jamvm): New variable.
2017-05-22 18:56:33 +02:00
72885a4c8f
gnu: Add classpath-devel.
...
* gnu/packages/java.scm (classpath-devel): New variable.
2017-05-22 18:56:33 +02:00
7292d69419
gnu: Add ecj-javac-on-jamvm-wrapper.
...
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper): New variable.
2017-05-22 18:56:33 +02:00
04d7cae2c4
gnu: Add classpath-jamvm-wrappers.
...
* gnu/packages/java.scm (classpath-jamvm-wrappers): New variable.
2017-05-22 18:56:33 +02:00
5f4402c7a3
gnu: Add jamvm-bootstrap.
...
* gnu/packages/java.scm (jamvm-bootstrap): New variable.
2017-05-22 18:56:33 +02:00
d3551e861e
gnu: Add classpath.
...
* gnu/packages/java.scm (classpath): New variable.
2017-05-22 18:56:33 +02:00
6a5829d995
gnu: Add ecj-javac-wrapper.
...
* gnu/packages/java.scm (ecj-javac-wrapper): New variable.
2017-05-22 18:56:32 +02:00
5461721fa0
gnu: Add ecj-bootstrap.
...
* gnu/packages/java.scm (ecj-bootstrap): New variable.
2017-05-22 18:56:32 +02:00
5783bd7730
gnu: Add ant-bootstrap.
...
* gnu/packages/java.scm (ant-bootstrap): New variable.
2017-05-22 18:56:32 +02:00
57f6c50db1
gnu: Add sablevm.
...
* gnu/packages/java.scm (sablevm): New variable.
2017-05-22 18:56:32 +02:00
2551fee8a0
gnu: Add sablevm-classpath.
...
* gnu/packages/java.scm (sablevm-classpath): New variable.
2017-05-22 18:56:32 +02:00
e1ae3587d2
gnu: Add jikes.
...
* gnu/packages/java.scm (jikes): New variable.
2017-05-22 18:55:34 +02:00
296b3c631c
gnu: Add r-edaseq.
...
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
2017-05-22 18:54:59 +02:00
7b46532779
gnu: Add r-deseq.
...
* gnu/packages/bioinformatics.scm (r-deseq): New variable.
2017-05-22 18:54:59 +02:00
d4b83651d1
gnu: Add r-aroma-light.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
2017-05-22 18:54:58 +02:00
fd3782d13b
Merge branch 'version-0.13.0'
2017-05-22 18:25:01 +02:00
52d2a2be1f
gnu: vte-ng: Update to 0.48.3.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.3.a.
2017-05-22 15:28:59 +02:00
b7c0c756da
gnu: gexiv2: Update to 0.10.6.
...
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.6.
2017-05-22 15:17:12 +02:00
123e816816
gnu: dconf-editor: Update to 3.22.3.
...
* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.3.
2017-05-22 15:17:08 +02:00
e6a36cf2f3
gnu: aisleriot: Update to 3.22.2.
...
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.2.
2017-05-22 15:17:01 +02:00
f2da7c861b
gnu: vte: Update to 0.48.3.
...
* gnu/packages/gnome.scm (vte): Update to 0.48.3.
2017-05-22 15:16:40 +02:00
e4cddbbcac
Merge branch 'master' into staging
2017-05-22 14:56:50 +02:00
74297231be
gnu: fraggenescan: Update to 1.30.
...
* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30.
[arguments]: Update patching of paths, install procedure. Add new test
case.
2017-05-22 11:44:20 +01:00
7569613076
gnu: roary: Update to 3.8.2.
...
* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
2017-05-22 11:44:20 +01:00
3cbfc149c3
gnu: taxtastic: Update to 0.6.4.
...
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4.
[source]: Use PyPI URI.
2017-05-22 11:44:19 +01:00
b458413721
gnu: r-mutationalpatterns: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
2017-05-22 09:44:08 +02:00
f1d1ef71ea
gnu: v4l-utils: Update to 1.12.5.
...
* gnu/packages/video.scm (v4l-utils): Update to 1.12.5.
2017-05-21 17:12:48 +02:00
cfa7473c2b
gnu: x265: Update to 2.4.
...
* gnu/packages/video.scm (x265): Update to 2.4.
2017-05-21 17:12:48 +02:00
3bc45ad460
gnu: vlc: Update to 2.2.5.1.
...
* gnu/packages/video.scm (vlc): Update to 2.2.5.1.
[source]: Remove obsolete snippet.
2017-05-21 17:12:48 +02:00
ba58886a8c
gnu: libaacs: Update to 0.9.0.
...
* gnu/packages/video.scm (libaacs): Update to 0.9.0.
2017-05-21 17:12:48 +02:00
ef81341f0e
gnu: diamond: Update to 0.9.0.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0.
[license]: Change to AGPL3+.
2017-05-21 16:08:03 +01:00
e9c53359e7
gnu: guix: Update to a6d728b.
2017-05-21 16:59:04 +02:00
a6d728b7aa
gnu: guix: Update to 0.13.0.
2017-05-21 16:58:53 +02:00
88682c9a72
gnu: fasttree: Update to 2.1.10.
...
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
2017-05-21 15:42:08 +01:00
abc08cbae6
gnu: python-biom-format: Update to 2.1.6.
...
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
2017-05-21 15:42:08 +01:00
c522f57e22
gnu: python-future: Update to 0.16.0.
...
* gnu/packages/python.scm (python-future): Update to 0.16.0.
2017-05-21 15:42:08 +01:00
1d0aa4d8c2
gnu: ccid: Update to 1.4.27.
...
* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
2017-05-21 16:37:54 +02:00
20d2e1faa9
gnu: fio: Update to 2.20.
...
* gnu/packages/benchmark.scm (fio): Update to 2.20.
[arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
2017-05-21 16:33:42 +02:00
31044e6ff2
gnu: nano: Update to 2.8.4.
...
* gnu/packages/nano.scm (nano): Update to 2.8.4.
2017-05-21 16:17:01 +02:00
18f61e002b
gnu: vim: Update to 8.0.0600.
...
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
2017-05-21 14:34:45 +02:00
8b1ff6f0ab
gnu: vim-full: Disable failing test.
...
* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
2017-05-21 14:34:45 +02:00
718448e176
gnu: linux-libre: Update to 4.11.2.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2.
(%linux-libre-hash): Update hash.
2017-05-21 02:03:32 -04:00
a08691dfbb
gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations.
...
This removes support for the "shared memory communications over RDMA" (SMC-R)
networking protocol, which was added in 4.11 without the knowledge of the RDMA
maintainers, and which is thought to contain significant security flaws. For
details, see <https://lwn.net/Articles/723081 > and
<https://lwn.net/Articles/723070 >.
* gnu/packages/aux-files/linux-libre/4.11-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC.
723# 0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
2017-05-21 01:47:09 -04:00
519fd6c367
gnu: linux-libre@4.9: Update to 4.9.29.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
2017-05-21 01:45:21 -04:00
ec8d69ebfe
gnu: linux-libre@4.4: Update to 4.4.69.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
2017-05-21 01:44:25 -04:00
324499184a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.
...
This avoids pulling in glibc & co. Fixes a regression introduced in
2f861edf5c
2017-05-21 01:17:11 +02:00
9f8d6eb24a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.
...
This avoids pulling in glibc & co. Fixes a regression introduced in
2f861edf5c
2017-05-21 01:14:51 +02:00
fda33e495b
gnu: ghostscript: Add TODO comment about bundled jbig2dec.
...
* gnu/packages/ghostscript.scm (ghostscript): Add comment.
2017-05-20 16:26:29 -04:00
10cb88f85c
gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}.
...
* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jbig2dec)[source]: Use them.
2017-05-20 16:26:29 -04:00
fefd4c197f
gnu: pcsc-lite: Update to 1.8.21.
...
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
2017-05-20 21:42:58 +02:00
12eecbf0bb
gnu: icedtea@3: Add aarch32-drop.
...
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
2017-05-20 14:57:22 -04:00
db531f734a
gnu: icedtea@3: Update to 3.4.0 [security fixes].
...
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.
* gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
2017-05-20 14:57:22 -04:00
b17bd261b0
gnu: imagemagick: Update to 6.9.8-6.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
2017-05-20 14:06:20 -04:00
82ce81ba06
gnu: guix: Add 'guile2.0-guix'.
...
* gnu/packages/package-management.scm (guile2.0-guix): New variable.
2017-05-20 20:00:53 +02:00
74460d1121
gnu: libssh, guile-ssh: Add a "debug" output.
...
* gnu/packages/ssh.scm (libssh)[outputs]: New field.
(guile-ssh)[outputs]: New field.
2017-05-20 19:49:36 +02:00
7dccad95b6
gnu: icedtea@2: Update to 2.6.10 [security fixes].
...
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.
* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
2017-05-20 14:39:50 +02:00
6a9defd747
gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].
...
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
2017-05-20 14:39:50 +02:00
c383dc520f
gnu: guile-ssh: Fix potential double-free/use-after-free issue.
...
Fixes <http://bugs.gnu.org/26976 >.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
2017-05-20 10:17:49 +02:00
56a03975eb
gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR.
...
See <https://bugs.gnu.org/25836 > for background.
* gnu/packages/patches/aspell-default-dict-dir.patch: New file.
* gnu/packages/aspell.scm (aspell)[source](patches): New field.
[native-search-paths]: New field.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-05-20 10:16:14 +02:00
c90fd5564c
gnu: qemu: Fix CVE-2017-7493.
...
* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu)[source]: Use it.
2017-05-20 10:15:53 +02:00
d03b34cf19
gnu: glibc/hurd: Do not apply i686 patch.
...
This is a follow-up to commit c2e4f14ac8
2017-05-20 10:15:31 +02:00
5d6e38a6c3
gnu: glibc/hurd: Use modify-phases syntax.
...
* gnu/packages/base.scm (glibc/hurd)[arguments]: Use modify-phases syntax.
2017-05-20 10:15:28 +02:00
ed5e3ab8ab
gnu: tor: Update to 0.3.0.7.
...
* gnu/packages/tor.scm (tor): Update to 0.3.0.7.
2017-05-20 10:15:00 +02:00
d30ce4a7e2
gnu: icedtea@2: Update to 2.6.10 [security fixes].
...
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.
* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
2017-05-19 21:40:26 -04:00
cc5a76a74c
gnu: Add loksh.
...
* gnu/packages/shells.scm (loksh): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-20 02:42:04 +02:00
70f8242b13
gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].
...
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
2017-05-19 20:32:26 -04:00
1326166ebe
gnu: calibre: Don't create uninstaller.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>. Add 'patch-source' phase.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
affaf98f77
gnu: calibre: Add exhaustive license list.
...
* gnu/packages/ebook.scm (calibre): Add exhaustive license list.
(chmlib)[license]: Use license: prefix.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
9b7dcc2703
gnu: calibre: Add missing dependencies.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add poppler, python2-dnspython,
and python2-pygments.
[arguments]: Remove old TODO comments. libwmf and psutil are no longer used.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
eeba7d3a07
gnu: calibre: Unbundle chardet.
...
* gnu/packages/ebook.scm (calibre)[source]: Delete bundled chardet.
[inputs]: Add python2-chardet.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
b3399a0985
gnu: calibre: Unbundle liberation fonts.
...
*gnu/packages/ebook.scm (calibre)[source]: Delete liberation .ttf files.
[native-inputs]: Add font-liberation.
[arguments]: Calibre still references the bundled fonts, so we install the
packaged fonts to the directory the bundled fonts would have been.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
29ec085170
gnu: calibre: Unbundle python2-markdown.
...
* gnu/packages/ebook.scm (calibre)[snippet]: Replace python references to
bundled markdown with packaged. Remove markdown from source.
[inputs]: Add python2-markdown as a dependency.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
d94a99ec66
gnu: calibre: Import unbundle feedparser patch from debian.
...
* gnu/packages/ebook.scm (calibre)[source]: Reference new patch file.
[inputs]: Add python2-feedparser as an input.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
7010d231db
gnu: calibre: Import dont-load-icons patch from debian.
...
* gnu/packages/patches/calibre-dont-load-remote-icons.patch: New file.
* gnu/packages/ebooks.scm (calibre)[source]: Add reference to patch file.
* gnu/local.mk (dist_path_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
cd6171c1b4
gnu: calibre: Update to 2.85.1.
...
* gnu/packages/ebooks.scm (calibre): Update to 2.85.1.
* gnu/packages/patches/calibre-drop-unrar.patch: Delete incompatible patch
file. Recreate debian patch file from the latest calibre git revision.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
41fa164aa0
gnu: python-pyqt@4: Update to 4.12.
...
* gnu/packages/qt.scm (python-pyqt-4): Update to 4.12.
[source]: Adjust URI to file rename.
2017-05-19 21:33:43 +02:00
5ac3a671d8
gnu: python-pyqt: Update to 5.8.2.
...
* gnu/packages/qt.scm (python-pyqt): Update to 5.8.2.
2017-05-19 21:24:11 +02:00
f6da41b54d
gnu: python-sip: Update to 4.19.2.
...
* gnu/packages/qt.scm (python-sip): Update to 4.19.2.
2017-05-19 21:24:11 +02:00
e7fbd49132
gnu: guile-ssh: Fix potential double-free/use-after-free issue.
...
Fixes <http://bugs.gnu.org/26976 >.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
2017-05-19 10:50:20 +02:00
acf82a1152
gnu: btrfs-progs: Update to 4.11.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.
2017-05-18 18:55:11 +02:00
4d2e1d1442
gnu: mcelog: Update to 150.
...
* gnu/packages/linux.scm (mcelog): Update to 150.
2017-05-18 18:55:11 +02:00
8cf6a63382
gnu: nano: Update to 2.8.3.
...
* gnu/packages/nano.scm (nano): Update to 2.8.3.
2017-05-18 19:13:10 +03:00
2b18ad054c
gnu: Add gemma.
...
* gnu/packages/bioinformatics.scm (gemma): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
Jelle Licht