27d6d24e63
gnu: python-scikit-learn: Update to 0.20.3.
...
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.3.
2019-06-17 20:22:42 +02:00
a6f2ced34b
gnu: Add tbsp.
...
* gnu/packages/bioinformatics.scm (tbsp): New variable.
2019-06-17 20:22:38 +02:00
bf473f0ca0
gnu: Add rw.
...
* gnu/packages/graph.scm (rw): New variable.
2019-06-17 19:47:15 +02:00
f455d99dfa
gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.
...
* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here...
* gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
2019-06-17 19:47:15 +02:00
7658904a34
gnu: Fix freeorion build.
...
* gnu/packages/games.scm (freeorion)[arguments]: Fix font unbundling.
2019-06-17 17:37:04 +02:00
9f6065237d
gnu: Add edge-addition-planarity-suite.
...
* gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
2019-06-17 17:02:01 +02:00
1e1a65a633
gnu: python-cypari2: Update to 2.1.1.
...
* gnu/packages/sagemath.scm (python-cypari2): Update to 2.1.1.
2019-06-17 16:00:13 +02:00
20caeea483
gnu: Add cliquer.
...
* gnu/packages/sagemath.scm (cliquer): New variable.
2019-06-17 16:00:13 +02:00
505459d7cb
gnu: busybox: Don't install to usr.
...
* gnu/packages/busybox.scm (busybox)[arguments]: Add a custom phase
to prevent installing to %PREFIX/usr.
2019-06-17 16:27:16 +03:00
de2d14f2ff
gnu: waybar: Add optional dependencies.
...
* gnu/packages/wm.scm(waybar)[inputs]: Add libdbusmenu, libnl,
libmpdclient and pulseaudio.
2019-06-17 13:33:06 +02:00
5cfc16320a
gnu: python-scipy: Update to 1.2.2.
...
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.2.2.
2019-06-17 13:31:23 +02:00
f434664cc0
gnu: oil-shell: Update to 0.6pre22.
...
It turns out the currently packaged release fails to build for me.
According to upstream, the 0.6 pre-releases are preferable to
currently packaged 0.5.
gnu/packages/shells.scm (oil-shell): Update to 0.6pre22.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17 12:36:13 +02:00
73eacca85e
gnu: kakoune: Remove dependency on boost.
...
kakoune builds without boost since a while already.
* gnu/packages/text-editors.scm (kakoune)[inputs]: Remove boost.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17 12:36:13 +02:00
ed504cafa2
vm: 'system-docker-image' builds in a UTF-8 locale.
...
Fixes <https://bugs.gnu.org/36215 >.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.
This is a followup to 9c941364bf
2019-06-17 12:36:13 +02:00
123b9c02dd
gnu: open-zwave: Unbundle hidapi.
...
* gnu/packages/patches/open-zwave-hidapi.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/zwave.scm (open-zwave)[source](patches): New field.
(snippet): Delete 'cpp/hidapi'.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add HIDAPI.
2019-06-17 12:36:13 +02:00
bf95a142bb
gnu: gap: Update to 4.10.1.
...
* gnu/packages/algebra.scm (gap): Update to 4.10.1.
Install headers and library files by hand, since the make targets have
disappeared. Delete the special check phase, since the "make check" target
has appeared. Remove a package that is no longer recommended, and enable
two recommended packages with clarified licenses.
2019-06-17 12:15:21 +02:00
55350f8316
gnu: cmst: Don't install files to usr.
...
* gnu/packages/connman.scm (cmst)[arguments]: Move custom 'fix-Makefiles
phase before 'build. Add more substitutions.
2019-06-17 10:02:47 +03:00
9e3e80baa3
gnu: cava: Don't install files to usr.
...
* gnu/packages/audio.scm (cava)[arguments]: In configure-flags change
FONT_DIR to not use 'usr'.
2019-06-17 10:02:46 +03:00
ee0b4733e1
gnu: toybox: Don't install files to usr.
...
* gnu/packages/busybox.scm (toybox)[arguments]: Add custom phase to
remove any files installed in $PREFIX/usr.
2019-06-17 10:02:45 +03:00
c9f0331152
gnu: xpra: Update to 2.5.2.
...
* gnu/packages/xorg.scm (xpra): Update to 2.5.2.
2019-06-17 08:28:38 +02:00
0bc010dacd
gnu: Add emacs-extend-smime.
...
* gnu/packages/emacs-xyz.scm (emacs-extend-smime): New variable.
2019-06-16 21:25:59 -07:00
3c33931c80
gnu: Upgrade emacs-default-encrypt to 4.4.
...
* gnu/packages/emacs-xyz.scm (emacs-default-encrypt) <version>: Upgrade
to 4.4.
<sha256>: Update accordingly.
<uri, home-page>: Honor changes to upstream's website.
2019-06-16 21:25:59 -07:00
932a6c422a
gnu: r-rhisat2: Update to 1.0.3.
...
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.3.
2019-06-17 04:55:12 +02:00
42df44f645
gnu: r-seurat: Update to 3.0.2.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2.
2019-06-17 04:55:03 +02:00
6dc3c58728
gnu: r-tximport: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1.
2019-06-17 04:54:56 +02:00
7bbd06ed59
gnu: r-systempiper: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1.
2019-06-17 04:54:51 +02:00
fd61e9c5d6
gnu: r-r-utils: Update to 2.9.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.9.0.
2019-06-17 04:54:46 +02:00
0f4182a137
gnu: r-dt: Update to 0.7.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.7.
2019-06-17 04:54:40 +02:00
074dd1806c
gnu: r-rcpparmadillo: Update to 0.9.500.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.500.2.0.
2019-06-17 04:54:36 +02:00
e89e4bb634
gnu: r-mime: Update to 0.7.
...
* gnu/packages/statistics.scm (r-mime): Update to 0.7.
2019-06-17 04:54:32 +02:00
24868ae72e
gnu: r-formatr: Update to 1.7.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.7.
2019-06-17 04:54:27 +02:00
4661effbd5
gnu: r-ggplot2: Update to 3.2.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.2.0.
[propagated-inputs]: Remove r-plyr.
2019-06-17 04:54:11 +02:00
18242e4b52
gnu: r-servr: Update to 0.14.
...
* gnu/packages/cran.scm (r-servr): Update to 0.14.
2019-06-17 04:54:05 +02:00
9fea25cf32
gnu: r-polspline: Update to 1.1.15.
...
* gnu/packages/cran.scm (r-polspline): Update to 1.1.15.
2019-06-17 04:54:00 +02:00
663a50e8f9
gnu: r-deldir: Update to 0.1-21.
...
* gnu/packages/cran.scm (r-deldir): Update to 0.1-21.
2019-06-17 04:53:55 +02:00
776c62d1b2
gnu: r-nor1mix: Update to 1.3-0.
...
* gnu/packages/cran.scm (r-nor1mix): Update to 1.3-0.
2019-06-17 04:53:51 +02:00
5cc896546b
gnu: r-tractor-base: Update to 3.3.2.
...
* gnu/packages/cran.scm (r-tractor-base): Update to 3.3.2.
2019-06-17 04:53:47 +02:00
935c6532ac
gnu: r-rspectra: Update to 0.15-0.
...
* gnu/packages/cran.scm (r-rspectra): Update to 0.15-0.
2019-06-17 04:53:42 +02:00
a7794b7243
gnu: r-emmeans: Update to 1.3.5.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.
2019-06-17 04:53:37 +02:00
89afd03172
gnu: r-abcrf: Update to 1.8.
...
* gnu/packages/cran.scm (r-abcrf): Update to 1.8.
[propagated-inputs]: Add r-doparallel and r-foreach.
2019-06-17 04:53:20 +02:00
45dcc89de7
gnu: r-sjmisc: Update to 2.8.0.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.0.
[propagated-inputs]: Remove r-haven; add r-insight.
2019-06-17 04:53:04 +02:00
e0cd8f7340
gnu: r-extradistr: Update to 1.8.11.
...
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.11.
2019-06-17 04:52:57 +02:00
bb6c8f207b
gnu: guile-gi: Update to 0.0.2.
...
* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.0.2.
[source]: Fetch using url-fetch.
[arguments]: Add make flags to remove unexpectedly passing test from
XFAIL_TESTS.
[native-inputs]: Remove autoconf, automake, and texinfo.
2019-06-17 04:52:22 +02:00
d1a3a8e15e
gnu: guile-picture-language: Update to 0.0.1-1-91d10c9.
...
* gnu/packages/guile-xyz.scm (guile-picture-language): Update to
0.0.1-1-91d10c9.
[build-system]: Use gnu-build-system.
[native-inputs]: Add autoconf, automake, imagemagick, pkg-config, and texinfo.
2019-06-17 03:06:53 +02:00
58637415be
gnu: youtube-viewer: Refer to youtube-dl.
...
* gnu/packages/video.scm (youtube-viewer)[inputs]: Add youtube-dl.
[arguments]: Add ‘refer-to-inputs’ phase.
2019-06-17 03:04:31 +02:00
a157fb2723
gnu: radare2: Download over HTTPS.
...
* gnu/packages/engineering.scm (radare2)[source]: Use HTTPS.
2019-06-17 03:04:31 +02:00
e605820bc5
gnu: radare2: Don't use NAME in source URI.
...
* gnu/packages/engineering.scm (radare2)[source]: Hard-code NAME.
2019-06-17 03:04:30 +02:00
935e4b3abd
gnu: nsd: Update to 4.2.0.
...
* gnu/packages/dns.scm (nsd): Update to 4.2.0.
2019-06-17 03:04:30 +02:00
3abc9cc242
gnu: knot: Update to 2.8.2.
...
* gnu/packages/dns.scm (knot): Update to 2.8.2.
2019-06-17 03:04:30 +02:00
8fadac9577
gnu: suil: Update to 0.10.4.
...
* gnu/packages/audio.scm (suil): Update to 0.10.4.
2019-06-17 03:04:30 +02:00
562a2a4095
gnu: Add freeorion
...
* gnu/packages/games.scm (freeorion): New variable.
2019-06-16 21:40:09 +02:00
914bba2809
gnu: docker-compose: Add required Python dependencies.
...
* gnu/packages/python-xyz.scm (python-jsonschema-2.6):
New old public variable.
* gnu/packages/docker.scm (docker-compose)[inputs]:
Add python-docker-pycreds and use python-jsonschema-2.6.
2019-06-16 19:44:42 +02:00
10a3297389
gnu: dstat: Add two patches, fix two bugs.
...
* gnu/packages/admin.scm (dstat)[source]: Add patches.
* gnu/packages/patches/dstat-fix-crash-when-specifying-delay.patch,
gnu/packages/patches/dstat-skip-devices-without-io.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-06-16 19:44:42 +02:00
fa67073f13
gnu: dstat: Fix Python 3 deprecation warning.
...
* gnu/packages/admin.scm (dstat)[arguments]:
Add ‘fix-python3-DeprecationWarning’ phase.
2019-06-16 19:44:42 +02:00
4fce1ff129
gnu: Add font-anonymous-pro-minus.
...
* gnu/packages/fonts.scm (font-anonymous-pro-minus): New public variable.
2019-06-16 19:44:42 +02:00
8bae6c744c
gnu: keepassxc: Update to 2.4.3.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.3.
2019-06-16 14:26:45 +03:00
86c05c4465
gnu: linux-libre: Update to 5.1.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.10.
(%linux-libre-hash): Update hash.
2019-06-16 04:11:07 -04:00
fc6290fb1f
gnu: linux-libre@4.19: Update to 4.19.51.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.51.
(%linux-libre-4.19-hash): Update hash.
2019-06-16 04:09:12 -04:00
466595eeb2
gnu: linux-libre@4.14: Update to 4.14.126.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.126.
(%linux-libre-4.14-hash): Update hash.
2019-06-16 04:08:06 -04:00
7a1d6a7708
gnu: Add waybar.
...
* gnu/packages/wm.scm(waybar): New variable.
2019-06-16 00:29:00 +02:00
121d9d1a7a
gnu: Add spdlog.
...
* gnu/packages/logging.scm(spdlod): New variable.
2019-06-15 21:50:49 +02:00
7dbeb5a791
services: Include USB_ModeSwitch in %desktop-services.
...
Fixes <https://bugs.gnu.org/35640 >.
* gnu/services/desktop.scm (%desktop-services): Add usb-modeswitch-service-type.
* doc/guix.texi (Networking Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-15 18:37:57 +02:00
f5be51040c
services: Add usb-modeswitch-service-type.
...
* gnu/services/networking.scm (usb-modeswitch-service-type): New variable.
(usb-modeswitch-configuration): New variable.
(usb-modeswitch-sh): New procedure.
(usb-modeswitch-configuration->udev-rules): New procedure.
* doc/guix.texi (Networking Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-15 18:37:54 +02:00
494a8cd03a
gnu: units: Update to 2.19.
...
* gnu/packages/maths.scm (units): Update to 2.19.
2019-06-15 18:29:58 +02:00
a59902ff11
gnu: rush: Update to 1.9.
...
* gnu/packages/rush.scm (rush): Update to 1.9.
2019-06-15 18:29:45 +02:00
25cb591ce4
gnu: wget: Update to 1.20.3.
...
* gnu/packages/wget.scm (wget): Update to 1.20.3.
2019-06-15 18:29:31 +02:00
02dad49d42
gnu: gengetopt: Update to 2.23.
...
* gnu/packages/popt.scm (gengetopt): Update to 2.23.
[native-inputs]: New field.
2019-06-15 18:28:13 +02:00
d2de780272
gnu: dico: Update to 2.9.
...
* gnu/packages/dico.scm (dico): Update to 2.9.
2019-06-15 18:24:52 +02:00
b3f02caeec
gnu: libmicrohttpd: Update to 0.9.64.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.64.
2019-06-15 18:23:38 +02:00
f3d7970053
services: Remove unneeded imports that led to cycles.
...
Fixes <https://bugs.gnu.org/36207 >.
Reported by Jack Hill <jackhill@jackhill.us>.
* gnu/services/admin.scm: Remove unneeded import of (gnu services
base).
* gnu/services/mcron.scm: Likewise.
2019-06-15 18:15:23 +02:00
ddd401d28f
gnu: swayidle: Add elogind support.
...
* gnu/packages/wm.scm (swayidle)[arguments]: Add #:configure-flags.
[inputs]: Add elogind.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-06-15 14:43:34 +02:00
24087364f5
gnu: emacs-desktop-environment: Update to 0.2.2.
...
* gnu/packages/emacs-xyz.scm (emacs-desktop-environment): Update to 0.2.2.
2019-06-15 13:44:57 +02:00
a60dbad3bc
Merge branch 'staging'
2019-06-15 09:46:12 +02:00
c7fbf61865
gnu: Remove leftover patch.
...
This is a follow-up to commit d680a8afd1
2019-06-15 09:42:12 +02:00
4c7e8c234d
gnu: Add benchmark.
...
* gnu/packages/benchmark.scm(benchmark): New variable.
* gnu/packages/patches/benchmark-unbundle-googletest.patch: New file.
* gnu/local.mk(dist_patch_DATA): Add it.
2019-06-14 23:18:12 +02:00
bc70516bba
gnu: Remove r-loomr.
...
The loomR package is actually non-free software according to its author. See
https://github.com/mojaveazure/loomR/pull/24 .
* gnu/packages/bioinformatics.scm (r-loomr): Remove variable.
2019-06-14 17:32:04 +02:00
e23b6a6800
gnu: sway: Hardcode path to swaybg.
...
* gnu/packages/wm.scm (sway)[arguments]: Hardcode path to swaybg.
[inputs]: Add swaybg.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-06-14 14:06:06 +02:00
71bfbe9ba8
gnu: whois: Update to 5.4.3.
...
* gnu/packages/networking.scm (whois): Update to 5.4.3.
2019-06-14 14:06:06 +02:00
54200da4b3
gnu: ungoogled-chromium: Update to 75.0.3770.90-0.5d8abc3 [fixes CVE-2019-5842].
...
* gnu/packages/chromium.scm (%chromium-version): Update to 75.0.3770.90.
(%debian-revision): Update to 'debian/75.0.3770.90-1'.
(%chromium-origin): Update hashes.
2019-06-14 14:05:47 +02:00
30825c4629
gnu: emacs-org-noter: Tweak.
...
* gnu/packages/emacs-xyz.scm (emacs-org-noter): Adjust indentation and
description.
2019-06-13 23:27:34 +02:00
576cb396ea
gnu: Add emacs-org-noter
...
* gnu/packages/emacs-xyz.scm (emacs-org-noter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:23:28 +02:00
1aa2c25560
gnu: ikiwiki: Update to 3.20190228.
...
* gnu/packages/web.scm (ikiwiki): Update to 3.20190228.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
1682368932
gnu: perl-yaml-libyaml: Update to 0.78.
...
* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.78.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
15f836efc1
gnu: perl-canary-stability: Update to 2013.
...
* gnu/packages/perl.scm (perl-canary-stability): Update to 2013.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
a3abc3fdfc
gnu: perl-db-file: Update to 1.852.
...
* gnu/packages/databases.scm (perl-db-file): Update to 1.852.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:44 +02:00
6bb5a7e08c
gnu: Add emacs-solaire-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:06 +03:00
4df1d31b54
gnu: Add emacs-mixed-pitch.
...
* gnu/packages/emacs-xyz.scm (emacs-mixed-pitch): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
fdcd50b93b
gnu: Add emacs-restart-emacs.
...
* gnu/packages/emacs-xyz.scm (emacs-restart-emacs): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
9989e06fda
gnu: Add emacs-elfeed-org.
...
* gnu/packages/emacs-xyz.scm (emacs-elfeed-org): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
c56a65aae7
gnu: Add emacs-xtest.
...
* gnu/packages/emacs-xyz.scm (emacs-xtest): New variable.
2019-06-13 23:40:05 +03:00
9062fde4c6
gnu: parcimonie: Update source and home-page.
...
* gnu/packages/gnupg.scm (parcimonie)[source]: Update to new url.
[home-page]: Same.
2019-06-13 20:43:20 +03:00
ed8d3f33a5
build-system/haskell: Generate Setup.hs if needed.
...
The default Setup.hs is boilerplate that is frequently left out of
source packages. Several packages already add a phase to generate it,
so moving this phase to the build system is just factoring out an
existing pattern.
See <https://github.com/phadej/time-compat/issues/4 >.
* guix/build/haskell-build-system.scm (generate-setuphs): New procedure.
(%standard-phases): Add it after 'unpack'.
* gnu/packages/haskell.scm (ghc-foundation, ghc-inline-c,
ghc-inline-c-cpp, ghc-rio): Remove 'arguments'.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2019-06-13 13:30:24 -04:00
f388f4a568
Merge branch 'staging'
2019-06-13 15:27:30 +02:00
2a9d89afb6
gnu: gstreamer: Skip failing test on 32-bit systems.
...
* gnu/packages/gstreamer.scm (gstreamer)[arguments]: When building for a
32-bit system, add #:phases.
2019-06-13 14:08:32 +02:00
3745909dc9
gnu: Add ri-li.
...
* gnu/packages/games.scm (ri-li): New variable.
* gnu/packages/patches/ri-li-modernize_cpp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
2019-06-13 13:59:58 +02:00
47f2168b6f
gnu: Add Kawa.
...
* gnu/packages/kawa.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-06-13 13:00:37 +02:00
0ddf17dc1a
gnu; emacs-realgud: Add a 'file-name' field to the origin.
...
* gnu/packages/emacs-xyz.scm (emacs-realgud)[source]: Add 'file-name'.
2019-06-13 13:00:37 +02:00
0882c491f0
gnu: emacs-realgud: Update to 1.5.0.
...
* gnu/packages/emacs-xyz.scm (emacs-realgud): Update to 1.5.0.
[source]: Fetch from git.
Remove upstreamed patch.
* gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 13:00:37 +02:00
ed8a551653
gnu: gpxsee: Fetch from Git instead of a generated tarball.
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* gnu/packages/gps.scm (gpxsee)[source]: Use 'git-fetch'.
2019-06-13 13:00:37 +02:00
286ef5d97c
gnu: gpxsee: Upgrade to 7.8
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* gnu/packages/gps.scm (gpxsee): Update to 7.8.
[arguments]: Leave "config.h" unchanged in 'configure' phase.
Remove 'install' phase.
[home-page, synopsis, description]: Update.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 13:00:37 +02:00
Ricardo Wurmus