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Author SHA1 Message Date
Mark H Weaver bc91562939
gnu: gtk+: Graft upstream fix for crashes in Emacs and IceCat. 
Fixes <https://bugs.gnu.org/34454>.

* gnu/packages/patches/gtk3-fix-deprecation-macro-use.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+/fixed): New variable.
(gtk+)[replacement]: New field.
 2019-03-30 02:34:24 -04:00
Tobias Geerinckx-Rice c948cf9092
gnu: Add font-iosevka-slab. 
The ’slab’ variants of Iosevka were moved to a separate archive with
version 2.0.0.

* gnu/packages/fonts.scm (font-iosevka-slab): New public variable.
 2019-03-29 21:09:11 +01:00
Tobias Geerinckx-Rice 785747a974
gnu: font-iosevka: Update to 2.2.0. 
* gnu/packages/fonts.scm (font-iosevka): Update to 2.2.0.
 2019-03-29 21:00:23 +01:00
Ricardo Wurmus 51e98f7e0f
gnu: Add r-yamss. 
* gnu/packages/bioconductor.scm (r-yamss): New variable.
 2019-03-29 19:28:11 +01:00
Ricardo Wurmus 5cfa4bff69
gnu: Add r-ebimage. 
* gnu/packages/bioconductor.scm (r-ebimage): New variable.
 2019-03-29 19:28:03 +01:00
Ricardo Wurmus ffe7029bab
gnu: Add r-aucell. 
* gnu/packages/bioconductor.scm (r-aucell): New variable.
 2019-03-29 18:10:46 +01:00
Ricardo Wurmus f31e10f82e
gnu: Add r-allelicimbalance. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
 2019-03-29 18:07:17 +01:00
Ricardo Wurmus adf7d8135b
gnu: Add r-annotationtools. 
* gnu/packages/bioconductor.scm (r-annotationtools): New variable.
 2019-03-29 18:05:45 +01:00
Ricardo Wurmus 0b91b7b969
gnu: Add r-annotationfuncs. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
 2019-03-29 17:49:54 +01:00
Ricardo Wurmus 9bf4bb19c9
gnu: Add r-abaenrichment. 
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus 3972cfce6a
gnu: Add r-gofuncr. 
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus 692bce1595
gnu: Add r-abadata. 
* gnu/packages/bioconductor.scm (r-abadata): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus 1fab2cf811
gnu: Add r-mapplots. 
* gnu/packages/cran.scm (r-mapplots): New variable.
 2019-03-29 17:43:25 +01:00
Ricardo Wurmus 32e0f906d7
gnu: Add r-atacseqqc. 
* gnu/packages/bioconductor.scm (r-atacseqqc): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus e5bff3079d
gnu: Add r-genomicscores. 
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus 2a72ef561b
gnu: Add r-motifstack. 
* gnu/packages/bioconductor.scm (r-motifstack): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus 229f97c37a
gnu: Add r-motiv. 
* gnu/packages/bioconductor.scm (r-motiv): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus 051e8e1a5b
gnu: Add r-rgadem. 
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus c54ab337bc
gnu: Add r-preseqr. 
* gnu/packages/cran.scm (r-preseqr): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus 41aab7d186
gnu: Add r-bacon. 
* gnu/packages/bioconductor.scm (r-bacon): New variable.
 2019-03-29 17:13:41 +01:00
Ludovic Courtès 9398152ad1
gnu: php: Fix typo. 
Regression introduced in e8cfce439a.

* gnu/packages/php.scm (php)[arguments]: Add missing 'else' branch of
the 'if'.  Change first argument to 'string-prefix?' to match GNU
triplets as well.
 2019-03-29 15:35:54 +01:00
Efraim Flashner 8339ccac5f
gnu: python-faiss: Fix building on non-Intel architectures. 
* gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom
'build-swig phase to change build flags for different archictures.
 2019-03-29 17:08:05 +03:00
Efraim Flashner 3776dc094c
gnu: faiss: Fix building on non-Intel architectures. 
* gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel
specific headers.
[arguments]: Adjust custom 'prepare-build phase to adjust compile flags
for different architectures.
 2019-03-29 17:08:02 +03:00
Ricardo Wurmus 4774677228
gnu: stepmania: Fix all instances of accessing application data. 
This is a follow-up to commit 45aba232ab.

* gnu/packages/games.scm (stepmania)[arguments]: Rename phase
ensure-gtk-module-can-be-found to ensure-application-files-can-be-found and
fix remaining instances of application data access.
 2019-03-29 14:14:19 +01:00
Leo Famulari 47131ebbc9
gnu: Stellarium: Update to 0.19.0. 
* gnu/packages/astronomy.scm (stellarium): Update to 0.19.0.
[arguments]: Remove obsolete 'patch-tests' phase.
 2019-03-29 02:37:28 -04:00
Ricardo Wurmus 45aba232ab
gnu: stepmania: Fix loading of gtk module. 
Fixes <https://bugs.gnu.org/34854>.

Suggested by Nicolas Goaziou.

* gnu/packages/games.scm (stepmania)[arguments]: Add phase
"ensure-gtk-module-can-be-found".
 2019-03-29 07:14:17 +01:00
Ricardo Wurmus d656aea0ef
gnu: zynaddsubfx: Update to 3.0.4. 
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.4.
 2019-03-29 06:48:13 +01:00
Ricardo Wurmus 59d331f16a
gnu: Add r-abseqr. 
* gnu/packages/bioconductor.scm (r-abseqr): New variable.
 2019-03-29 06:35:57 +01:00
Ricardo Wurmus f084e41e2c
gnu: Add r-flexdashboard. 
* gnu/packages/cran.scm (r-flexdashboard): New variable.
 2019-03-29 06:35:48 +01:00
Ricardo Wurmus d2aa2d2451
gnu: r-png: Move to (gnu packages cran). 
* gnu/packages/image.scm (r-png): Move from here...
* gnu/packages/cran.scm (r-png): ...to here.
 2019-03-29 06:34:39 +01:00
Ricardo Wurmus d8a28332c5
gnu: Add r-ggcorrplot. 
* gnu/packages/cran.scm (r-ggcorrplot): New variable.
 2019-03-29 05:39:35 +01:00
Nicolas Goaziou 4e43e3175e
gnu: Add openclonk. 
* gnu/packages/games.scm (openclonk): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-29 05:34:45 +01:00
Ricardo Wurmus e040413e0a
gnu: r-cairo: Update to 1.5-10. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-10.
[inputs]: Add zlib.
 2019-03-29 05:34:45 +01:00
Tobias Geerinckx-Rice 07de94d6a4
gnu: hyperrogue: Don't use NAME in hyperrogue-data. 
* gnu/packages/games.scm (hyperrogue)[native-inputs]: Hard code NAME in
hyperrogue-data source URI.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 4959856443
gnu: quadrapassel: Don't use NAME in source URI. 
* gnu/packages/games.scm (quadrapassel)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 5b35bdaaa5
gnu: libmanette: Don't use NAME in source URI. 
* gnu/packages/games.scm (libmanette)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 98e27db5bb
gnu: frotz-dumb-terminal: Merge strings in URI. 
* gnu/packages/games.scm (frotz-dumb-terminal)[source]: Merge separate
string components, probably from a naive ’s/name/"name"/’ substitution.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice e2c9f9de9f
gnu: frotz: Don't use NAME in source URI. 
* gnu/packages/games.scm (frotz)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice a6ac8e0b31
gnu: fortune-mod: Don't use NAME in source COMMIT. 
* gnu/packages/games.scm (fortune-mod)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 30b8b2013b
gnu: lugaru: Don't use NAME in source URI. 
* gnu/packages/games.scm (lugaru)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 146a4459db
gnu: no-more-secrets: Don't use unstable tarball. 
* gnu/packages/games.scm (no-more-secrets)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice a01aea7d66
gnu: hyperrogue: Don't use NAME in source URI. 
* gnu/packages/games.scm (hyperrogue)[source]: Hard-code NAME.
 2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice ed9bcf50d3
gnu: mrrescue: Don't use NAME in source URI. 
* gnu/packages/games.scm (mrrescue)[source]: Hard-code NAME.
 2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice 22da44e8c2
gnu: laby: Don't use NAME in source URI. 
* gnu/packages/games.scm (laby)[source]: Hard-code NAME.
 2019-03-29 04:07:43 +01:00
Ricardo Wurmus e9d4409bab
gnu: Add python-bbknn. 
* gnu/packages/bioinformatics.scm (python-bbknn): New variable.
 2019-03-29 03:55:45 +01:00
Ricardo Wurmus c91ecf2db4
gnu: Add python-annoy. 
* gnu/packages/python-xyz.scm (python-annoy): New variable.
 2019-03-29 03:55:45 +01:00
Ricardo Wurmus 51a9971ccb
gnu: Add python-faiss. 
* gnu/packages/graph.scm (python-faiss): New variable.
 2019-03-29 03:55:45 +01:00
Ricardo Wurmus 3e40318772
gnu: Add faiss. 
* gnu/packages/graph.scm (faiss): New variable.
 2019-03-29 03:55:45 +01:00
Tobias Geerinckx-Rice 631b20f90b
gnu: red-eclipse: Use GIT-FETCH for data sources. 
* gnu/packages/games.scm (red-eclipse): Update DATA-SOURCE hashes.
[arguments]: COPY-RECURSIVELY instead of extracting tarballs.
[inputs]: Use GIT-FETCH and GIT-FILE-NAME for all DATA-SOURCES.
 2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice e464bd607a
gnu: chromium-bsu: Don't use NAME in source URI. 
* gnu/packages/games.scm (chromium-bsu)[source]: Hard-code NAME.
 2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice d8f4aefed9
gnu: warzone2100: Update source URI. 
* gnu/packages/games.scm (warzone2100)[source]: Update URI and don't
hard-code NAME.
 2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice c41b2ffbf2
gnu: grue-hunter: Don't use NAME in source URI. 
* gnu/packages/games.scm (grue-hunter)[source]: Hard-code NAME.
 2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice bb7c071b94
gnu: red-eclipse: Don't use unstable tarball. 
* gnu/packages/games.scm (red-eclipse)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 04:23:02 +01:00
Danny Milosavljevic 586d30caa2
gnu: rust: Fix test setup. 
* gnu/packages/rust.scm (rust-1.30)[arguments]<#:phases>
[disable-amd64-avx-test]: Replace.
(rust)[arguments]<#:phases>[disable-amd64-avx-test]: Replace.
 2019-03-29 00:50:35 +01:00
Ivan Petkov 339c1365fd
gnu: rust: Refactor in order to prepare for newer Rust versions. 
* gnu/packages/rust.scm (rust-source): Rename to...
(rust-source-pre-1.32): ...this.  Add PATCH-FLAGS.
(rust-bootstrapped-package): Rename to...
(rust-bootstrapped-package-pre-1.32): ...this.
(rust-source): New procedure.
(rust-bootstrapped-package): New procedure.
(mrustc): Use rust-bootstrapped-package-pre-1.32.
(rust-1.19): Use rust-bootstrapped-package-pre-1.32.
(rust-1.20): Use rust-bootstrapped-package-pre-1.32.
(rust-1.21): Use rust-bootstrapped-package-pre-1.32.
(rust-1.22): Use rust-bootstrapped-package-pre-1.32.
(rust-1.23): Use rust-bootstrapped-package-pre-1.32.
(rust-1.24): Use rust-bootstrapped-package-pre-1.32.
(rust-1.25): Use rust-bootstrapped-package-pre-1.32.
(rust-1.26): Use rust-bootstrapped-package-pre-1.32.
(rust-1.27): Use rust-bootstrapped-package-pre-1.32.
(rust-1.28): Use rust-bootstrapped-package-pre-1.32.
(rust-1.29): Use rust-bootstrapped-package-pre-1.32.
(rust-1.30): Use rust-bootstrapped-package-pre-1.32.
(rust): Use rust-bootstrapped-package-pre-1.32.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-29 00:50:35 +01:00
Tobias Geerinckx-Rice 1d6c047937
gnu: powwow: Remove redundant FILE-NAME. 
* gnu/packages/games.scm (powwow)[source]: Remove FILE-NAME.
 2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice 2e5a0690bb
gnu: openrct2: Don't use unstable tarball. 
* gnu/packages/games.scm (openrct2)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice 071782762a
gnu: fizmo: Don't use NAME in source URI. 
* gnu/packages/games.scm (fizmo)[source]: Hard-code NAME.
 2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice 00a82e8385
gnu: mars: Use GIT-FILE-NAME. 
* gnu/packages/games.scm (mars)[source]: Use GIT-FILE-NAME.
 2019-03-29 01:44:09 +01:00
Mark H Weaver fa3c2aad65
gnu: linux-libre: Update to 5.0.5. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.5.
(%linux-libre-hash): Update hash.
 2019-03-28 19:36:22 -04:00
Mark H Weaver 4bdf98f62f
gnu: linux-libre@4.19: Update to 4.19.32. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.32.
(%linux-libre-4.19-hash): Update hash.
 2019-03-28 19:36:19 -04:00
Mark H Weaver 8ea1d2b5bd
gnu: linux-libre@4.14: Update to 4.14.109. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.109.
(%linux-libre-4.14-hash): Update hash.
 2019-03-28 19:36:17 -04:00
Mark H Weaver aa5a425c8f
gnu: linux-libre@4.9: Update to 4.9.166. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.166.
 2019-03-28 19:36:14 -04:00
Tobias Geerinckx-Rice feb50ac6dc
gnu: l-abbaye-des-morts: Don't use unstable tarball. 
This also fixes a build failure due to the use of NAME.

* gnu/packages/games.scm (l-abbaye-des-morts)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 00:55:01 +01:00
Tobias Geerinckx-Rice a8a96bbead
gnu: prboom-plus: Don't use NAME in source URI. 
* gnu/packages/games.scm (prboom-plus)[source]: Hard-code NAME.
 2019-03-29 00:50:36 +01:00
Tobias Geerinckx-Rice 96848ecc16
gnu: pipewalker: Don't use NAME in source URI. 
* gnu/packages/games.scm (pipewalker)[source]: Hard-code NAME.
 2019-03-29 00:47:55 +01:00
Tobias Geerinckx-Rice a544817e80
gnu: nethack: Don't use NAME in source URI. 
* gnu/packages/games.scm (nethack)[source]: Hard-code NAME, not VERSION.
 2019-03-29 00:46:36 +01:00
Tobias Geerinckx-Rice dd0369f426
gnu: ltris: Don't use NAME in source URI. 
* gnu/packages/games.scm (ltris)[source]: Hard-code NAME.
 2019-03-29 00:43:05 +01:00
Tobias Geerinckx-Rice 9303b09a78
gnu: freedoom: Re-indent. 
* gnu/packages/games.scm (freedoom): Re-indent expression.
 2019-03-29 00:42:08 +01:00
Tobias Geerinckx-Rice 7c8ed74516
gnu: freedoom: Don't use unstable tarball. 
* gnu/packages/games.scm (freedoom)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 00:39:58 +01:00
Tobias Geerinckx-Rice 0922354d6a
gnu: cowsay: Don't use NAME in source URI. 
* gnu/packages/games.scm (cowsay)[source]: Hard-code NAME.
 2019-03-29 00:29:44 +01:00
Tobias Geerinckx-Rice c0c099502b
gnu: armagetron-advanced: Don't use NAME in source URI. 
* gnu/packages/games.scm (armagetron-advanced)[source]: Hard-code NAME.
 2019-03-29 00:28:49 +01:00
Tobias Geerinckx-Rice 69a0717c66
gnu: project-starfighter: Don't use NAME in source URI. 
* gnu/packages/games.scm (project-starfighter)[source]: Hard-code NAME.
 2019-03-29 00:26:45 +01:00
Ludovic Courtès c9711f9347
gnu: ratpoison: Provide a .desktop file with an absolute file name. 
This allows GDM to start ratpoison.  Without that GDM crashes with an
assertion failure when trying to start a ratpoison session.

* gnu/packages/ratpoison.scm (ratpoison.desktop): Remove.
(ratpoison.desktop)[arguments]: Add #:modules.
Rewrite 'install-xsession' phase such that .desktop file contains an
absolute file name.
 2019-03-28 23:06:59 +01:00
Julien Lepiller e8cfce439a
gnu: php: Disable failing tests on armhf. 
* gnu/packages/php.scm (php)[arguments]: Disable failing tests on armhf.
 2019-03-28 22:59:14 +01:00
Efraim Flashner 241885347a
gnu: reptyr: Enable support for aarch64-linux. 
* gnu/packages/screen.scm (reptyr)[supported-systems]: Mark
aarch64-linux as supported.
 2019-03-28 21:42:00 +02:00
Brian Leung d2df92e47c
gnu: Add emacs-link-hint. 
* gnu/packages/emacs-xyz.scm (emacs-link-hint): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-28 21:31:43 +03:00
Tobias Geerinckx-Rice 40d59c4e22
gnu: dropbear: Don't use unstable tarball. 
* gnu/packages/screen.scm (dropbear)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice cf9ab49e97
gnu: dropbear: Update to 2019.78. 
* gnu/packages/ssh.scm (dropbear): Update to 2019.78.
 2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice 01307bba9c
gnu: reptyr: Update to 0.7.0. 
* gnu/packages/screen.scm (reptyr): Update to 0.7.0.
[source]: Remove patch.
[arguments]: Add bash completion directory name.
* gnu/packages/patches/reptyr-fix-gcc-7.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice 6da31b3c7b
gnu: dvdisaster: Use archived source and home page. 
* gnu/packages/cdrom.scm (dvdisaster)[source, home-page]:
Use archive.org mirror.
 2019-03-28 20:19:28 +01:00
Brian Leung 29e3fd3424
gnu: emacs-dired-hacks: Update to 0.0.1-1.2c12345. 
* gnu/packages/emacs-xyz.scm (emacs-dired-hacks): Update to 0.0.1-1.2c12345.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-28 21:09:10 +03:00
Efraim Flashner 642b195a70
gnu: gzdoom: Limit supported architectures. 
* gnu/packages/games.scm (gzdoom)[supported-systems]: New field.
 2019-03-28 19:58:35 +02:00
Ricardo Wurmus 84ad024e2d
gnu: Add r-a4. 
* gnu/packages/bioconductor.scm (r-a4): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus dbfe337586
gnu: Add r-a4base. 
* gnu/packages/bioconductor.scm (r-a4base): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus 8e15f86139
gnu: Add r-a4reporting. 
* gnu/packages/bioconductor.scm (r-a4reporting): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus b8d13e2c0e
gnu: Add r-a4preproc. 
* gnu/packages/bioconductor.scm (r-a4preproc): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus 9ae37581e0
gnu: Add r-a4classif. 
* gnu/packages/bioconductor.scm (r-a4classif): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus 0ec0a5ecc9
gnu: Add r-a4core. 
* gnu/packages/bioconductor.scm (r-a4core): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus a793e88c5e
gnu: Add r-annaffy. 
* gnu/packages/bioconductor.scm (r-annaffy): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus ce77562a9e
gnu: Add r-mlinterfaces. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus 409a13fe76
gnu: Add r-mpm. 
* gnu/packages/cran.scm (r-mpm): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus 74cada8ef1
gnu: Add r-mlbench. 
* gnu/packages/cran.scm (r-mlbench): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus efba56139a
gnu: Add r-threejs. 
* gnu/packages/cran.scm (r-threejs): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus d59df3340b
gnu: Add r-gbm. 
* gnu/packages/cran.scm (r-gbm): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus 8473597f80
gnu: Add r-ggvis. 
* gnu/packages/cran.scm (r-ggvis): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus fe3fb4e7ef
gnu: Add r-rda. 
* gnu/packages/cran.scm (r-rda): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus aae0b86d35
gnu: Add r-pamr. 
* gnu/packages/cran.scm (r-pamr): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus 1c0c4b544d
gnu: Add r-varselrf. 
* gnu/packages/cran.scm (r-varselrf): New variable.
 2019-03-28 18:23:22 +01:00
Efraim Flashner 1aa662b309
gnu: ogre: Don't use unstable tarball. 
* gnu/packages/graphics.scm (ogre)[source]: Download using git-fetch.
 2019-03-28 12:14:22 +02:00
Efraim Flashner d5640c587f
gnu: googletest: Don't use unstable tarball. 
* gnu/packages/check.scm (googletest)[source]: Download using git-fetch.
* gnu/packages/crypto.scm (encfs)[arguments]: Adjust accordingly.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Same.
* gnu/packages/terminals.scm (eternalterminal)[arguments]: Same.
* gnu/packages/graphics.scm (ogre)[arguments]: Same. Remove now
unnecessary custom 'pre-build phase.
 2019-03-28 12:14:15 +02:00
Ricardo Wurmus d98fb5603b
gnu: hpcguix-web: Fix indentation. 
* gnu/packages/web.scm (hpcguix-web): Fix indentation.
 2019-03-27 23:11:20 +01:00
Efraim Flashner d8de2c01ff
gnu: emacs-emmet-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-emmet-mode)[source]: Download using
git-fetch.
 2019-03-27 23:05:08 +02:00
Efraim Flashner 0f8ff55513
gnu: emacs-tablist: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-tablist)[source]: Download using
git-fetch.
 2019-03-27 23:05:07 +02:00
Efraim Flashner b762dde997
gnu: emacs-mmm-mode: Update to 0.5.7. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.7.
 2019-03-27 23:05:07 +02:00
Efraim Flashner d3f6617b26
gnu: emacs-mmm-mode: Remove unnecessary phase. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[arguments]: Remove
unnecessary 'autogen phase.
 2019-03-27 23:05:07 +02:00
Efraim Flashner 8cd07b72e9
gnu: emacs-mmm-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[source]: Don't use
unstable tarball.
 2019-03-27 23:05:07 +02:00
Efraim Flashner 49464d2b16
gnu: emacs-google-maps: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-google-maps)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner 2c19ff18e2
gnu: emacs-direnv: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-direnv)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner 39a46a1f10
gnu: emacs-calfw: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-calfw)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner b4f96f3b3b
gnu: emacs-autothemer: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-autothemer)[source]: Download using
git-fetch.
 2019-03-27 23:05:05 +02:00
Efraim Flashner 3cf9a85ba7
gnu: emacs-ag: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-ag)[source]: Download using
git-fetch.
 2019-03-27 23:05:02 +02:00
Efraim Flashner c6abe90478
gnu: font-open-dyslexic: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-open-dyslexic)[source]: Download using
git-fetch.
 2019-03-27 22:25:17 +02:00
Efraim Flashner 1e90e4b0d9
gnu: font-google-material-design-icons: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-google-material-design-icons)[source]:
Download using git-fetch.
 2019-03-27 22:25:17 +02:00
Efraim Flashner 1f07550c86
gnu: font-tamzen: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-tamzen)[source]: Download using
git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
 2019-03-27 22:25:16 +02:00
Efraim Flashner c2426dbddc
gnu: font-fira-sans: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-fira-sans)[source]: Download using
git-fetch.
 2019-03-27 22:25:16 +02:00
Efraim Flashner 8f4dccf75d
gnu: font-adobe-source-han-sans: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-adobe-source-han-sans)[source]: Download
using git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
 2019-03-27 22:25:13 +02:00
Ricardo Wurmus 3d17dc5d8f
gnu: r-geometry: Update to 0.4.1. 
* gnu/packages/cran.scm (r-geometry): Update to 0.4.1.
[propagated-inputs]: Fix typo.
 2019-03-27 21:00:28 +01:00
Ricardo Wurmus 1d7022f706
gnu: r-feather: Update to 0.3.3. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.3.
 2019-03-27 21:00:28 +01:00
Nicolas Goaziou 24540c310f
gnu: Add emacs-relint. 
* gnu/packages/emacs-xyz.scm (emacs-relint): New variable.
 2019-03-27 20:41:29 +01:00
Brian Leung c881ed8698
gnu: Add emacs-zones. 
* gnu/packages/emacs-xyz.scm (emacs-zones): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-27 22:18:32 +03:00
Ricardo Wurmus f8295ee6de
gnu: Add r-clusterprofiler. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus 9c30cf65d2
gnu: Add r-enrichplot. 
* gnu/packages/bioconductor.scm (r-enrichplot): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus 305050b56d
gnu: Add r-dose. 
* gnu/packages/bioconductor.scm (r-dose): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus 11f226e124
gnu: Add r-ggraph. 
* gnu/packages/cran.scm (r-ggraph): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus b5b0a2ff49
gnu: Add r-europepmc. 
* gnu/packages/cran.scm (r-europepmc): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 83f43284c3
gnu: Add r-ggforce. 
* gnu/packages/cran.scm (r-ggforce): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus d4ff09af0d
gnu: Add r-urltools. 
* gnu/packages/cran.scm (r-urltools): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 09dde7fb01
gnu: Add r-polyclip. 
* gnu/packages/cran.scm (r-polyclip): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 91e06bedf8
gnu: Add r-tweenr. 
* gnu/packages/cran.scm (r-tweenr): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 85431ca3a8
gnu: Add r-triebeard. 
* gnu/packages/cran.scm (r-triebeard): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus e25828839d
gnu: Add r-ggplotify. 
* gnu/packages/cran.scm (r-ggplotify): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 1c59ec707e
gnu: Add r-farver. 
* gnu/packages/cran.scm (r-farver): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 585d5ae0fb
gnu: Add r-gridgraphics. 
* gnu/packages/cran.scm (r-gridgraphics): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus f8a5af4653
gnu: Add r-do-db. 
* gnu/packages/bioconductor.scm (r-do-db): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus af26c7ae70
gnu: Add r-fgsea. 
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 0d50d0df08
gnu: Add r-msigdbr. 
* gnu/packages/cran.scm (r-msigdbr): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 2d70460892
gnu: Add r-xkcd. 
* gnu/packages/cran.scm (r-xkcd): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus 2331bf2a64
gnu: Add r-extrafont. 
* gnu/packages/cran.scm (r-extrafont): New variable.
 2019-03-27 16:17:18 +01:00
Ricardo Wurmus b6933ea634
gnu: Add r-extrafontdb. 
* gnu/packages/cran.scm (r-extrafontdb): New variable.
 2019-03-27 16:17:18 +01:00
Ricardo Wurmus 81df4e1e98
gnu: Add r-rttf2pt1. 
* gnu/packages/cran.scm (r-rttf2pt1): New variable.
 2019-03-27 16:17:18 +01:00
Ludovic Courtès 06013a45aa
gnu: emacs-debbugs: Update to 0.17. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.17.
 2019-03-27 14:59:42 +01:00
Ricardo Wurmus 18c51cf3d3
gnu: Add r-xyz. 
* gnu/packages/cran.scm (r-xyz): New variable.
 2019-03-27 14:43:26 +01:00
Pierre Neidhardt 37099f5844
gnu: Add emacs-webfeeder. 
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): New variable.
 2019-03-27 11:33:09 +01:00
Ricardo Wurmus 58d8225ddb
gnu: trim-galore: Add pigz. 
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
 2019-03-27 11:32:08 +01:00
Ricardo Wurmus 5f1e31094d
gnu: trim-galore: Fix test for Python. 
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
 2019-03-27 11:28:38 +01:00
Ricardo Wurmus 2a509880d4
gnu: hdf-java: Adjust indentation. 
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
 2019-03-27 10:47:34 +01:00
Ricardo Wurmus 64dc8b0bfd
gnu: hdf-java: Fix build. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
 2019-03-27 10:13:46 +01:00
Ricardo Wurmus 9286c0f7e8
gnu: hdf-java: Use INVOKE. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
 2019-03-27 10:12:57 +01:00
Ricardo Wurmus dfe420ee46
gnu: r-rhdf5lib: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.3.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus 3b6c77445b
gnu: r-genomicfeatures: Update to 1.34.7. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus a12c527d3c
gnu: r-hdf5r: Update to 1.1.1. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus a7332d1a2f
gnu: r-caret: Update to 6.0-82. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus 733b3c59da
gnu: r-gtable: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus fc64504f2d
gnu: grantlee: Delete broken tests. 
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
 2019-03-27 09:33:50 +01:00
Kei Kebreau 4fee5ec049
gnu: Add adanaxis-mush and adanaxisgpl. 
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
 2019-03-26 20:59:15 -04:00
Pierre Langlois 4dcf221c85
gnu: qjackctl: Re-enable xunique. 
Version 0.5.6 of qjackctl appears to have fixed the xunique
bug that was causing X hanging when using tiling window managers.

See d54a1da43f/ChangeLog (L9)

* gnu/packages/audio.scm (qjackctl)[arguments]: Remove "--disable-xunique"
from configure-flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-27 00:09:38 +01:00
Ricardo Wurmus dd2f0cdba1
gnu: python-django-overextends: Use INVOKE. 
* gnu/packages/django.scm (python-django-overextends)[arguments]: Use INVOKE.
 2019-03-27 00:04:07 +01:00
Ricardo Wurmus de6be02379
gnu: python-django-contact-form: Use INVOKE. 
* gnu/packages/django.scm (python-django-contact-form)[arguments]: Use INVOKE.
 2019-03-27 00:03:31 +01:00
Ricardo Wurmus 7cdc7e579b
gnu: fritzing: Update to 0.9.3b. 
* gnu/packages/engineering.scm (fritzing): Update to 0.9.3b.
[source]: Fetch from git.
[arguments]: Use INVOKE and adjust configure phase.
[inputs]: Add libgit2; fetch fritzing-parts-db via git.
 2019-03-26 23:58:33 +01:00
Ricardo Wurmus 68631e037b
gnu: ldc: Use INVOKE. 
* gnu/packages/dlang.scm (ldc)[arguments]: Use INVOKE.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus 4b81d5c4bc
gnu: ldc-bootstrap: Use INVOKE. 
* gnu/packages/dlang.scm (ldc-bootstrap)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus 27cd31e6a5
gnu: open-adventure: Use INVOKE. 
* gnu/packages/games.scm (open-adventure)[arguments]: Use INVOKE.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus 7b67bb1fab
gnu: 0ad: Use INVOKE. 
* gnu/packages/games.scm (0ad)[arguments]: Use INVOKE.
 2019-03-26 23:13:51 +01:00
Pierre Neidhardt c771b799bd
gnu: Add jami-client-gnome. 
* gnu/packages/telephony.scm (jami-client-gnome): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt b630967247
gnu: Add libringclient. 
* gnu/packages/telephony.scm (libringclient): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt 1bfcb19bc3
gnu: Add libring. 
* gnu/packages/telephony.scm (libring): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt 915829e662
gnu: Add pjproject-jami. 
* gnu/packages/telephony.scm (pjproject-jami): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt bd4b6f4164
gnu: Add pjproject. 
* gnu/packages/telephony.scm (pjproject): New variable.
 2019-03-26 19:17:01 +01:00
Ludovic Courtès 863519f660
gnu: current-guix: Delay effectful bits. 
* gnu/packages/package-management.scm (current-guix): Delay 'repository-root'.
 2019-03-26 18:11:52 +01:00
Ricardo Wurmus 28d32817d8
gnu: python-scanpy: Update to 1.4. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.
[source]: Fetch from git.
[arguments]: Disable broken tests.
[native-inputs]: Add python-pytest.
[home-page]: Use HTTPS.
 2019-03-26 18:06:35 +01:00
Ricardo Wurmus 8c9372c124
gnu: python-anndata: Update to 0.6.18. 
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.6.18.
 2019-03-26 17:13:13 +01:00
Ricardo Wurmus fdc316f374
gnu: trim-galore: Update to 0.6.1. 
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1.
[arguments]: Adjust patching.
 2019-03-26 16:40:42 +01:00
Ricardo Wurmus 9ac17c6242
gnu: cutadapt: Update to 2.1. 
* gnu/packages/bioinformatics.scm (cutadapt): Update to 2.1.
[source]: Fetch from pypi.
[native-inputs]: Add python-setuptools-scm.
 2019-03-26 16:40:42 +01:00
Ricardo Wurmus 24d6498972
gnu: python-xopen: Update to 0.5.0. 
* gnu/packages/python-xyz.scm (python-xopen): Update to 0.5.0.
 2019-03-26 16:40:42 +01:00
Pierre Neidhardt f95e33a7ad
gnu: edgar: Rename package to the-legend-of-edgar. 
* gnu/packages/games.scm (edgar): Define in terms of
'deprecated-package'.
(the-legend-of-edgar): New variable, formerly known as "edgar".
 2019-03-26 13:44:01 +01:00
Pierre Neidhardt b1aee9fce2
gnu: btanks: Rename package to battle-tanks. 
* gnu/packages/games.scm (btanks): Define in terms of
'deprecated-package'.
(battle-tanks): New variable, formerly known as "btanks".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt f6a21d61de
gnu: tome4: Rename package to tales-of-maj-eyal. 
* gnu/packages/games.scm (tome4): Define in terms of
'deprecated-package'.
(tales-of-maj-eyal): New variable, formerly known as "tome4".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt 24a67aef2a
gnu: crawl-tiles: Rename package to dungeon-crawl-stone-soup-tiles. 
* gnu/packages/games.scm (crawl-tiles): Define in terms of
'deprecated-package'.
(dungeon-crawl-stone-soup-tiles): New variable, formerly known as "crawl-tiles".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt 36a0b5b48c
gnu: crawl: Rename package to dungeon-crawl-stone-soup. 
* gnu/packages/games.scm (crawl): Define in terms of
'deprecated-package'.
(dungeon-crawl-stone-soup): New variable, formerly known as "crawl".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt 8b6e2bc15f
gnu: fillets-ng: Rename package to fish-fillets-ng. 
* gnu/packages/games.scm (fillets-ng): Define in terms of
'deprecated-package'.
(fish-fillets-ng): New variable, formerly known as "fillets-ng".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt 6639295f2f
gnu: kiki: Rename package to kiki-the-nano-bot. 
* gnu/packages/games.scm (kiki): Define in terms of
'deprecated-package'.
(kiki-the-nano-bot): New variable, formerly known as "kiki".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt 184f5c8db1
gnu: starfighter: Rename package to project-starfighter. 
* gnu/packages/games.scm (starfighter): Define in terms of
'deprecated-package'.
(project-starfighter): New variable, formerly known as "starfighter".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt ecdb1348ad
gnu: wesnoth-server: Rename package to the-battle-for-wesnoth-server. 
* gnu/packages/games.scm (wesnoth-server): Define in terms of
'deprecated-package'.
(the-battle-for-wesnoth-server): New variable, formerly known as "wesnoth-server".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt 375cb94130
gnu: wesnoth: Rename package to the-battle-for-wesnoth. 
* gnu/packages/games.scm (wesnoth): Define in terms of
'deprecated-package'.
(the-battle-for-wesnoth): New variable, formerly known as "wesnoth".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt c91ed484d0
gnu: abbaye: Rename package to l-abbaye-des-morts. 
* gnu/packages/games.scm (abbaye): Define in terms of
'deprecated-package'.
(l-abbaye-des-morts): New variable, formerly known as "abbaye".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt c97e4d8bbe
gnu: gnubg: Rename package to gnubackgammon. 
* gnu/packages/games.scm (gnubg): Define in terms of
'deprecated-package'.
(gnubackgammon): New variable, formerly known as "gnubg".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt 973bd8a62c
gnu: cataclysm-dda: Rename package to cataclysm-dark-days-ahead. 
* gnu/packages/games.scm (cataclysm-dda): Define in terms of
'deprecated-package'.
(cataclysm-dark-days-ahead): New variable, formerly known as "cataclysm-dda".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt df42e0f9c9
gnu: armagetronad: Rename package to armagetron-advanced. 
* gnu/packages/games.scm (armagetronad): Define in terms of
'deprecated-package'.
(armagetron-advanced): New variable, formerly known as "armagetronad".
 2019-03-26 13:44:00 +01:00
Danny Milosavljevic ceab612374
gnu: docker: Use disjunct temp directories for probing. 
* gnu/packages/patches/docker-use-fewer-modprobes.patch: Use disjunct temp
directories for probing.
 2019-03-26 12:23:36 +01:00
Danny Milosavljevic 5e00dcc89e
gnu: docker: Add comment. 
* gnu/packages/patches/docker-use-fewer-modprobes.patch: Add comment.
 2019-03-26 12:23:36 +01:00
Ludovic Courtès e6301fb76d
packages: Adjust to new calling convention for "thunked" fields. 
Fixes <https://bugs.gnu.org/34995>.

This is a followup to abd4d6b33d.

* guix/packages.scm (package->bag): Adjust calls to INPUTS,
PROPAGATED-INPUTS, NATIVE-INPUTS, and ARGS, passing them SELF as an
argument.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Use (package-inputs
this-record) intead of (inputs).
* gnu/packages/version-control.scm (git)[arguments]: Likewise.
 2019-03-26 10:26:02 +01:00
nee 6c177f6140
gnu: gzdoom: Update to 3.7.2. 
* gnu/packages/games.scm (gzdoom): Update to 3.7.2.
[source](uri): Update path.
[source](snippet): Bundled libjpeg directory has been renamed.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2019-03-25 21:26:43 -04:00
Ludovic Courtès cde08a5120
gnu: guix: Update to f970946. 
* gnu/packages/package-management.scm (guix): Update to f970946.
 2019-03-25 23:37:05 +01:00
Danny Milosavljevic 516f6f55eb
gnu: docker: Use fewer modprobes. 
Fixes <https://bugs.gnu.org/34333>.
Reported by Allan Adair <allan@adair.io>.

* gnu/packages/patches/docker-use-fewer-modprobes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/docker.scm (docker)[source]: Use it.
 2019-03-25 20:27:57 +01:00
Leo Famulari cdfb69b46a
gnu: nano: Update to 4.0. 
* gnu/packages/nano.scm (nano): Update to 4.0.
 2019-03-25 15:02:59 -04:00
Ricardo Wurmus b9b177b317
gnu: Add r-svmisc. 
* gnu/packages/cran.scm (r-svmisc): New variable.
 2019-03-25 17:20:14 +01:00
Ricardo Wurmus 3f6e6e9857
gnu: Add r-rjava. 
* gnu/packages/cran.scm (r-rjava): New variable.
 2019-03-25 17:19:47 +01:00
Ricardo Wurmus 4f8b1fb35f
gnu: Add r-r2html. 
* gnu/packages/cran.scm (r-r2html): New variable.
 2019-03-25 16:29:03 +01:00
Ricardo Wurmus 7166b77adc
gnu: Add r-sampling. 
* gnu/packages/cran.scm (r-sampling): New variable.
 2019-03-25 16:28:38 +01:00
Ricardo Wurmus 6bdce94f43
gnu: r-gsl: Update to 2.1-6. 
* gnu/packages/cran.scm (r-gsl): Update to 2.1-6.
 2019-03-25 16:28:20 +01:00
Ricardo Wurmus a6d867fed9
gnu: Add r-sigpathway. 
* gnu/packages/bioconductor.scm (r-sigpathway): New variable.
 2019-03-25 16:20:04 +01:00
Ricardo Wurmus 9d0f794229
gnu: Add r-anota. 
* gnu/packages/bioconductor.scm (r-anota): New variable.
 2019-03-25 16:20:00 +01:00
Ricardo Wurmus c04f230eb3
gnu: Add r-gosemsim. 
* gnu/packages/bioconductor.scm (r-gosemsim): New variable.
 2019-03-25 16:19:52 +01:00
Ricardo Wurmus 3e41919d51
gnu: Add r-heatplus. 
* gnu/packages/bioconductor.scm (r-heatplus): New variable.
 2019-03-25 16:19:40 +01:00
Ricardo Wurmus c538bcdd38
gnu: Add r-varianttools. 
* gnu/packages/bioconductor.scm (r-varianttools): New variable.
 2019-03-25 16:09:16 +01:00
Ricardo Wurmus 8a5460b4fb
gnu: Add r-triform. 
* gnu/packages/bioconductor.scm (r-triform): New variable.
 2019-03-25 16:09:07 +01:00
Ricardo Wurmus 3080b81af6
gnu: Add r-hapassoc. 
* gnu/packages/cran.scm (r-hapassoc): New variable.
 2019-03-25 16:02:15 +01:00
Ricardo Wurmus a0583c0d13
gnu: Add r-hierfstat. 
* gnu/packages/cran.scm (r-hierfstat): New variable.
 2019-03-25 15:58:38 +01:00
Vagrant Cascadian ab7f1eb97a
gnu: Add brightnessctl. 
* gnu/packages/linux.scm (brightnessctl): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-25 15:21:15 +01:00
Ricardo Wurmus 80eb01c776
gnu: r-gkmsvm: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gkmsvm): Move from here...
* gnu/packages/bioconductor.scm (r-gkmsvm): ...to here.
 2019-03-25 14:34:41 +01:00
Ricardo Wurmus bac0ca322c
gnu: r-kernlab: Move to (gnu packages cran). 
* gnu/packages/machine-learning.scm (r-kernlab): Move from here...
* gnu/packages/cran.scm (r-kernlab): ...to here.
 2019-03-25 14:33:02 +01:00
Ricardo Wurmus c5a2b518ad
gnu: r-wgcna: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-wgcna): Move from here...
* gnu/packages/cran.scm (r-wgcna): ...to here.
 2019-03-25 14:05:09 +01:00
Ricardo Wurmus 72a216a9d0
gnu: r-optparse: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-optparse): Move from here...
* gnu/packages/cran.scm (r-optparse): ...to here.
 2019-03-25 14:04:19 +01:00
Ricardo Wurmus 0ef062b338
gnu: r-bookdown: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-bookdown): Move from here...
* gnu/packages/cran.scm (r-bookdown): ...to here.
 2019-03-25 14:03:21 +01:00
Ricardo Wurmus 469fb43891
gnu: r-sparql: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-sparql): Move from here...
* gnu/packages/cran.scm (r-sparql): ...to here.
 2019-03-25 14:01:56 +01:00
Ricardo Wurmus 7cd4ff2f0c
gnu: Add r-tdthap. 
* gnu/packages/cran.scm (r-tdthap): New variable.
 2019-03-25 14:00:32 +01:00
Ricardo Wurmus b8fea3c859
gnu: Add r-hwde. 
* gnu/packages/cran.scm (r-hwde): New variable.
 2019-03-25 14:00:32 +01:00
Ricardo Wurmus 1cdd9f0e8a
gnu: Add r-ldheatmap. 
* gnu/packages/cran.scm (r-ldheatmap): New variable.
 2019-03-25 14:00:32 +01:00
Ricardo Wurmus d4a255a484
gnu: Add r-dlmap. 
* gnu/packages/cran.scm (r-dlmap): New variable.
 2019-03-25 14:00:32 +01:00
Ricardo Wurmus 73fcd22244
gnu: Add r-ibdreg. 
* gnu/packages/cran.scm (r-ibdreg): New variable.
 2019-03-25 14:00:31 +01:00
Ricardo Wurmus bffb58269f
gnu: Add r-bqtl. 
* gnu/packages/cran.scm (r-bqtl): New variable.
 2019-03-25 14:00:31 +01:00
Tobias Geerinckx-Rice c3b5c803f0
gnu: perl-svg: Update source URL. 
* gnu/packages/perl.scm (perl-svg)[source]: Update URL.
 2019-03-25 14:11:03 +01:00
Tobias Geerinckx-Rice 034eae9c12
gnu: perl-class-date: Update source URL. 
* gnu/packages/perl.scm (perl-class-date)[source]: Update URL.
 2019-03-25 14:11:03 +01:00
Tobias Geerinckx-Rice 587f764e2a
gnu: perl-mouse: Update source URL. 
* gnu/packages/perl.scm (perl-mouse)[source]: Update URL.
 2019-03-25 14:11:02 +01:00
Tobias Geerinckx-Rice 2db3b2d303
gnu: perl-carp: Update source URL. 
* gnu/packages/perl.scm (perl-carp)[source]: Update URL.
 2019-03-25 14:11:02 +01:00
Tobias Geerinckx-Rice a4876fbe17
gnu: perl-class-accessor-grouped: Update source URL. 
* gnu/packages/perl.scm (perl-class-accessor-grouped)[source]:
Update URL.
 2019-03-25 14:10:45 +01:00
Tobias Geerinckx-Rice a7da90936f
gnu: perl-base: Update source URL. 
* gnu/packages/perl.scm (perl-base)[source]: Update URL.
 2019-03-25 13:34:59 +01:00
Tobias Geerinckx-Rice 83617aec58
gnu: perl-datetime-calendar-julian: Update source URL. 
* gnu/packages/perl.scm (perl-datetime-calendar-julian)[source]: Update URL.
 2019-03-25 13:31:29 +01:00
Tobias Geerinckx-Rice ae61388fb5
gnu: perl-carp-clan: Update source URL. 
* gnu/packages/perl.scm (perl-carp-clan)[source]: Update URL.
 2019-03-25 13:27:48 +01:00
Tobias Geerinckx-Rice e68f20502c
gnu: perl-class-c3-componentised: Update source URL. 
* gnu/packages/perl.scm (perl-class-c3-componentised)[source]:
Update URL.
 2019-03-25 13:18:35 +01:00
Tobias Geerinckx-Rice 5ca9cb1e17
gnu: perl-plack-test-externalserver: Update source URL. 
* gnu/packages/web.scm (perl-plack-test-externalserver)[source]:
Update URL.
 2019-03-25 13:11:25 +01:00
Tobias Geerinckx-Rice fd9fe868f8
gnu: perl-moosex-emulate-class-accessor-fast: Update source URL. 
* gnu/packages/perl.scm (perl-moosex-emulate-class-accessor-fast)
[source]: Update URL.
 2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 357b69499a
gnu: perl-log-any: Update source URL. 
* gnu/packages/perl.scm (perl-log-any)[source]: Update URL.
 2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 3ed36f3153
gnu: perl-file-temp: Update source URL. 
* gnu/packages/perl.scm (perl-file-temp)[source]: Update URL.
 2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 799f484251
gnu: perl-object-signature: Update source URL. 
* gnu/packages/perl.scm (perl-object-signature)[source]: Update URL.
 2019-03-25 12:59:39 +01:00
Meiyo Peng f970946c1d
gnu: fmt: Update to 5.3.0. 
* gnu/packages/pretty-print.scm (fmt): Update to 5.3.0.
  [arguments]: Remove #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:27 +01:00
Brian Leung 8dc329656b
gnu: Add emacs-company-jedi. 
* gnu/packages/emacs-xyz.scm (emacs-company-jedi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Brian Leung 1172d914ea
gnu: Add emacs-company-flow. 
* gnu/packages/emacs-xyz.scm (emacs-company-flow): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Brian Leung 06aff73855
gnu: Add emacs-jedi. 
* gnu/packages/emacs-xyz.scm (emacs-jedi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Brian Leung 16f6a75db0
gnu: Add emacs-python-environment. 
* gnu/packages/emacs-xyz.scm (emacs-python-environment): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Brian Leung 13e99cfcd8
gnu: Add emacs-prescient. 
* gnu/packages/emacs-xyz.scm (emacs-prescient): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Brian Leung 5247cd2a5e
gnu: Add emacs-company-auctex. 
* gnu/packages/emacs-xyz.scm (emacs-company-auctex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Brian Leung 6cd504ce75
gnu: Add emacs-company-cabal. 
* gnu/packages/emacs-xyz.scm (emacs-company-cabal): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Brian Leung bb034ab080
gnu: Add emacs-company-lsp. 
* gnu/packages/emacs-xyz.scm (emacs-company-lsp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Pierre Langlois de5ea7d961
gnu: Add gPodder. 
* gnu/packages/podcast.scm (gpodder): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:26 +01:00
Pierre Langlois b58ab1598f
gnu: Add python-mygpoclient. 
* gnu/packages/gpodder.scm (python-mygpoclient): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-25 11:39:25 +01:00
Mark H Weaver 4518a9dfa8
gnu: icecat: Update to 60.6.1-guix1 [security fixes]. 
Includes fixes for CVE-2019-9810 and CVE-2019-9813.

* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.1-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
 2019-03-25 05:23:39 -04:00
Ricardo Wurmus cd47dcf6a2
gnu: Add r-haplo-stats. 
* gnu/packages/cran.scm (r-haplo-stats): New variable.
 2019-03-25 10:02:03 +01:00
Ricardo Wurmus a8c965cfec
gnu: Add r-rms. 
* gnu/packages/cran.scm (r-rms): New variable.
 2019-03-25 10:02:03 +01:00