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46210 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 79d19d7d90
services: Import (srfi srfi-26) from the build side. 
See <https://lists.gnu.org/archive/html/guix-devel/2019-06/msg00119.html>.

* gnu/services/nix.scm (nix-activation): Remove (srfi srfi-26) from (host-)
imported modules.
 2019-06-12 17:26:28 +02:00
Ricardo Wurmus 798b80cea2
gnu: Add r-txdb-hsapiens-ucsc-hg38-knowngene. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): New variable.
 2019-06-12 16:23:44 +02:00
Marius Bakke 136eeb0b49
gnu: ungoogled-chromium: Update to 75.0.3770.80-0.5d8abc3. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Update for 75.
(%chromium-version): Update to 75.0.3770.80.
(%ungoogled-revision): Update to 5d8abc38b43a62f379615a0dc972b29d9aebb4b4.
(%debian-revision): Update to debian/75.0.3770.80-1.
(%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes.
(ungoogled-chromium-source): Include Debians GCC6 patches.
(ungoogled-chromium)[arguments]: Add "enable_vr=false" to #:configure-flags.
 2019-06-12 13:29:45 +02:00
Marius Bakke d0804ea0c6
gnu: chromium: Move origins into separate variables. 
* gnu/packages/chromium.scm (%chromium-origin, %ungoogled-origin,
%debian-origin): New variables.
(ungoogled-chromium-source): Adjust accordingly.
 2019-06-12 13:29:35 +02:00
Ricardo Wurmus 6054c823ae
gnu: pigx-rnaseq: Update to 0.0.6. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.6.
[inputs]: Remove bedtools.
 2019-06-12 13:12:00 +02:00
Efraim Flashner e38731138d
gnu: wget.scm: List inputs alphabetically. 
* gnu/packages/wget.scm: List inputs alphabetically.
 2019-06-12 12:58:34 +03:00
Efraim Flashner d7397187df
gnu: wget: Change default paste site. 
* gnu/packages/wget.scm (wgetpaste)[arguments]: Change default paste
site in custom 'remove-dead-paste-site phase.
 2019-06-12 12:58:33 +03:00
Efraim Flashner 08b00d384b
gnu: wgetpaste: Add xclip to wrapper program list. 
* gnu/packages/wget.scm (wgetpaste)[arguments]: Add xclip to list of
wrapper programs in custom 'wrap-program phase.
[inputs]: Add xclip.
 2019-06-12 12:58:33 +03:00
Ricardo Wurmus ae6fa185af
gnu: Add r-annotatr. 
* gnu/packages/bioconductor.scm (r-annotatr): New variable.
 2019-06-12 11:07:37 +02:00
Ivan Petkov 2444abd9c1
gnu: crate: Add proc-macro2 and quote. 
* gnu/packages/crates-io.scm: (rust-proc-macro2): New variable.
(rust-quote): New variable.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:44 -07:00
Ivan Petkov cb2471f726
gnu: crate: Add unicode-xid. 
* gnu/local.mk: (GNU_SYSTEM_MODULES): Add packages/crates-io.scm.
* gnu/packages/crates-io.scm: New file, containing unicode-xid.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:44 -07:00
Ivan Petkov 5a9ef8a960
import: crate: Define dependencies as arguments. 
* guix/import/crate.scm:
(crate-fetch)[input-crates]: Rename to dev-crates.
[native-input-crates]: Rename to dev-dep-crates.
[inputs]: Rename to cargo-inputs.
[native-inputs]: Rename to cargo-development-inputs.
(maybe-cargo-inputs, maybe-cargo-development-inputs, maybe-arguments): Add
them.
(make-crate-sexp)[inputs]: Rename to cargo-inputs.
[native-inputs]: Rename to cargo-development-inputs.
[maybe-native-inputs, maybe-inputs]: Replace with maybe-arguments.
* guix/import/utils.scm: (package-names->package-inputs): Make public.  Add
docstring.
* tests/crate.scm (crate->guix-package): Update the match pattern.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:44 -07:00
Ivan Petkov 8a290772a4
doc: Update cargo-build-system parameter docs. 
* doc/guix.texi: (Build Systems)[cargo-build-system]: Add references to
the #:rust, #:cargo-inputs, and #:cargo-development-inputs parameters.
Remove reference to installing crate sources.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:44 -07:00
Ivan Petkov d608e231e3
build-system/cargo: Don't copy source as an output. 
* guix/build-system/cargo.scm: (cargo-build)[build-expression->derivation]:
Don't add "src" output.
* guix/build/cargo-build-system.scm: (install-source): Delete it.
(%standard-phases): Delete 'install-source.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:44 -07:00
Ivan Petkov efdf2ae14e
build-system/cargo: Use sources from package sources. 
* guix/build/cargo-build-system.scm (crate-src?): New procedure.
(configure): Use the new procedure to expand crate tarballs in the vendor
directory.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:44 -07:00
Ivan Petkov a6ab6b7877
build-system/cargo: Expand transitive crate sources. 
* guix/build/cargo: (package-cargo-inputs): Add it.
(package-cargo-development-inputs): Add it.
(crate-closure): Add it.
(expand-crate-sources): Add it.
(lower)[private-keywords]: Add #:cargo-inputs and
[bag]: Use expand-crate-sources to augment build-inputs.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:41 -07:00
Amar Singh a38525789c
gnu: Add emacs-shroud. 
* gnu/packages/emacs-xyz.scm (emacs-shroud): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-06-11 22:35:26 +02:00
Tobias Geerinckx-Rice 2be6b5e2ee
services: Add SRFI-26 to Nix activation gexp. 
Fix the following fatal error on ‘guix system reconfigure’:

Backtrace:
          18 (primitive-load "/home/nckx/.config/guix/current/bin/guix")
In guix/ui.scm:
  1620:12 17 (run-guix-command _ . _)
In ice-9/boot-9.scm:
    829:9 16 (catch _ _ #<procedure 7a7caa2d4c80 at guix/ui.scm:587:2 (key c)> _)
    829:9 15 (catch _ _ #<procedure 7a7caa2d4c98 at guix/ui.scm:710:6 (key proc format-string format-args . …> …)
In guix/scripts/system.scm:
   1325:8 14 (_)
In guix/status.scm:
    768:4 13 (call-with-status-report _ _)
In guix/scripts/system.scm:
   1181:4 12 (process-action _ _ _)
In guix/store.scm:
   623:10 11 (call-with-store _)
  1800:24 10 (run-with-store _ _ #:guile-for-build _ #:system _ #:target _)
In guix/scripts/system.scm:
   920:13  9 (_ _)
    409:8  8 (_ _)
In unknown file:
           7 (primitive-load "/gnu/store/dha7j9gcz3vgb8cy7vfvvaswwsywrrzj-activate")
In ice-9/boot-9.scm:
   260:13  6 (for-each #<procedure primitive-load (_)> _)
In unknown file:
           5 (primitive-load "/gnu/store/ql1xjxrssxm51z2bn2v6l3mlrncij84h-activate-service")
In ice-9/eval.scm:
    619:8  4 (_ #f)
   196:35  3 (_ #f)
   196:27  2 (_ #f)
   223:20  1 (proc #<directory (guile-user) 1fa4140>)
In unknown file:
           0 (%resolve-variable (7 . cut) #<directory (guile-user) 1fa4140>)

ERROR: In procedure %resolve-variable:
error: cut: unbound variable

Reported-by: Alex McGrath on #guix.

* gnu/services/nix.scm (nix-activation): Import and use (srfi srfi-26).
 2019-06-11 21:05:32 +02:00
Christopher Lemmer Webber 948ecc27dd
gnu: racket: Update to 7.3. 
* gnu/packages/scheme.scm (racket): Update to 7.3.
* gnu/packages/patches/racket-store-checksum-override.patch: Update for Racket
  7.3.
 2019-06-11 13:45:27 -04:00
Ricardo Wurmus 944cb87a33
gnu: Add r-psiplot. 
* gnu/packages/bioinformatics.scm (r-psiplot): New variable.
 2019-06-11 13:39:50 +02:00
Marius Bakke 58bf51b4c0
Merge branch 'master' into staging 2019-06-11 10:27:09 +02:00
Marius Bakke bf3005346e
gnu: tbb: Update to 2019_U8. 
* gnu/packages/tbb.scm (tbb): Update to 2019_U8.
 2019-06-11 09:31:24 +02:00
Marius Bakke 6c98d9c7fc
gnu: offlineimap: Update to 7.2.4. 
* gnu/packages/mail.scm (offlineimap): Update to 7.2.4.
 2019-06-11 09:31:24 +02:00
Rutger Helling 80166beca2
gnu: wine-staging: Update to 4.10. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.10.
* gnu/packages/wine.scm (wine-staging): Update to 4.10.
 2019-06-11 08:28:02 +02:00
Rutger Helling 0debb9ac7e
gnu: faudio: Update to 19.06.07. 
* gnu/packages/audio.scm (faudio): Update to 19.06.07.
 2019-06-11 08:28:01 +02:00
Rutger Helling b6c31f0e50
gnu: kitty: Update to 0.14.2. 
* gnu/packages/terminals.scm (kitty): Update to 0.14.2.
 2019-06-11 08:28:01 +02:00
Tobias Geerinckx-Rice 501d4b335a
gnu: grim: Update to 1.2.0. 
* gnu/packages/image.scm (grim): Update to 1.2.0.
 2019-06-10 23:53:05 +02:00
Tobias Geerinckx-Rice 7d5113e50e
gnu: slurp: Update to 1.2.0. 
* gnu/packages/image.scm (slurp): Update to 1.2.0.
 2019-06-10 23:53:05 +02:00
Ludovic Courtès c5f66d2931
pack: Fix 'guix pack -f docker'. 
Regression introduced in a0f352b30f.

* guix/scripts/pack.scm (docker-image): Check whether ENTRY-POINT is
true before returning (string-append #$profile ...).
 2019-06-10 23:16:47 +02:00
Diego Nicola Barbato 2f9f792a1e
services: slim: Update SLiM theme to 1.x. 
* gnu/services/xorg.scm (%default-slim-theme-name): Change to "1.x".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-10 23:11:15 +02:00
Diego Nicola Barbato 226a3605d6
artwork: Update snapshot to 2f2fe74. 
* gnu/artwork.scm (%artwork-repository): Update to 2f2fe74.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-10 23:11:07 +02:00
Ludovic Courtès f8a9f99cd6
store: 'build-things' accepts derivation/output pairs. 
This allows callers to request the substitution of a single derivation
output.

* guix/store.scm (build-things): Accept derivation/output pairs among
THINGS.
* guix/derivations.scm (build-derivations): Likewise.
* tests/store.scm ("substitute + build-things with specific output"):
New test.
* tests/derivations.scm ("build-derivations with specific output"):
New test.
* doc/guix.texi (The Store): Adjust accordingly.
 2019-06-10 22:42:59 +02:00
Ludovic Courtès 416a7c69f1
ssh: Add missing import. 
* guix/ssh.scm: Use (ice-9 format).
 2019-06-10 22:42:52 +02:00
Ludovic Courtès 883dc11c3a
download: Update list of content-addressed mirrors. 
* guix/download.scm (%content-addressed-mirrors): Change
"berlin.guixsd.org" to "ci.guix.gnu.org" and move it first.
 2019-06-10 22:42:23 +02:00
Julien Lepiller aec9bb8793
doc: Work around a po4a bug. 
* doc/guix.texi: Work around a po4a bug that prevents `guix pull` from
completing.
 2019-06-10 18:31:21 +02:00
Ricardo Wurmus d69bbd8c70
Revert "nls: Update 'de' translation of the manual." 
This reverts commit 78b0f9419f.
 2019-06-10 14:34:16 +02:00
Marius Bakke 0defdb636f
gnu-maintenance: Switch to ftp.mirrorservice.org for KDE updater. 
mirrors.mit.edu seems no longer available over FTP.

* guix/gnu-maintenance.scm (latest-kde-release): Change from mirrors.mit.edu
to ftp.mirrorservice.org.
 2019-06-10 13:58:24 +02:00
Ricardo Wurmus 075a90946b
gnu: Add r-biosigner. 
* gnu/packages/bioconductor.scm (r-biosigner): New variable.
 2019-06-10 13:41:48 +02:00
Ricardo Wurmus a9fac3f4d3
gnu: Add r-ropls. 
* gnu/packages/bioconductor.scm (r-ropls): New variable.
 2019-06-10 13:41:45 +02:00
Christopher Baines 4252dace19
services: guix-publish: Configure log rotation. 
* gnu/services/base.scm (%guix-publish-log-rotations): New variable.
(guix-publish-service-type): Extend the rottlog-service-type.
 2019-06-10 07:58:09 +01:00
Christopher Baines b09793172f
services: guix-publish: Log to a file. 
This makes it easier to read the output, as it's recorded in a file.

* gnu/services/base.scm (guix-publish-shepherd-service): Add #:log-file to
make-forkexec-constructor.
 2019-06-10 07:58:06 +01:00
Oleg Pykhalov 47b9614b31
services: Add 'nix-service-type'. 
* gnu/services/nix.scm: New file.
* gnu/local.mk: Add this.
* doc/guix.texi (Miscellaneous Services): Document this.
 2019-06-10 09:15:45 +03:00
Mark H Weaver 31775e400e
gnu: linux-libre: Update to 5.1.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.8.
(%linux-libre-hash): Update hash.
 2019-06-10 01:52:15 -04:00
Mark H Weaver 84b3d9dd93
gnu: linux-libre@4.19: Update to 4.19.49. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.49.
(%linux-libre-4.19-hash): Update hash.
 2019-06-10 01:51:08 -04:00
Mark H Weaver 5d293300f8
gnu: linux-libre@4.15: Remove package. 
This release series is no longer supported upstream.

* gnu/packages/linux.scm (%linux-libre-4.15-version)
(%linux-libre-4.15-hash, linux-libre-4.15)
(linux-libre-headers-4.15): Remove variables.
 2019-06-10 01:48:01 -04:00
Mark H Weaver ff5355f58e
gnu: linux-libre@4.14: Update to 4.14.124. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.124.
(%linux-libre-4.14-hash): Update hash.
 2019-06-10 01:45:26 -04:00
Eric Bavier ac30257600
gnu: emacs-idris-mode: Use recent git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-idris-mode)[source]: Use git-fetch.
[version]: Include revision and commit.
 2019-06-09 23:18:16 -05:00
Jack Hill 535a69e9e5
gnu: recutils: Remove emacs-minimal native input. 
* gnu/packages/databases.scm (recutils)[native-inputs]: Remove emacs-minimal.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-10 07:04:48 +03:00
Jack Hill 9df786752e
gnu: Add emacs-recutils. 
* gnu/packages/databases.scm (emacs-recutils): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-10 07:04:45 +03:00
Tobias Geerinckx-Rice c447eb4d1d
gnu: Restore allegro-mesa-18.2.5-and-later.patch. 
Dropped in 49405aaf5c, it's still in use
by the (leaf) allegro-5.0 package.

* gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch: Newish file.
* gnu/local.mk (dist_patch_DATA): Re-add it.
 2019-06-10 01:26:50 +02:00