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Author SHA1 Message Date
Tobias Geerinckx-Rice 0189045904
gnu: snd: Update to 19.2. 
* gnu/packages/audio.scm (snd): Update to 19.2.
 2019-03-11 02:08:00 +01:00
Ludovic Courtès 8b3ad455be
services: guix: Pre-compute the default ACL. 
This makes the first boot slightly faster.

* gnu/services/base.scm (not-config?): New procedure.
(hydra-key-authorization): Rewrite to pre-compute the default ACL, and
pre-compute it using (guix pki) directly.
 2019-03-10 23:41:33 +01:00
Ludovic Courtès 309d87c3aa
services: guix: Allocate build user UIDs in the system range. 
Until now we were allocating the UIDs of build users above 30000, which
is in "normal" user UID range.  This static allocation was unnecessary,
so this change lets the system allocate UIDs in the system range (below
1000).

* gnu/services/base.scm (guix-build-accounts): Remove #:first-uid, and
remove 'uid' field from 'user-account'.
 2019-03-10 23:41:33 +01:00
Ludovic Courtès 45fef894eb
gnu: gnome-shell: Avoid top-level reference to inkscape. 
Fixes <https://bugs.gnu.org/34806>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/gnome.scm (gnome-shell)[source](snippet): Remove
reference to INKSCAPE.  Instead, simply copy the SVG file to
data/theme.
[arguments]: Add 'convert-logo-to-png' phase.
[native-inputs]: Add INKSCAPE.
 2019-03-10 23:41:33 +01:00
Tobias Geerinckx-Rice 5ae5932b2f
gnu: ansible: Update to 2.7.8 [fixes CVE-2019-3828]. 
* gnu/packages/admin.scm (ansible): Update to 2.7.8.
 2019-03-10 23:00:08 +01:00
Marius Bakke 7fda7b8fad
gnu: pugixml: Build as shared library. 
* gnu/packages/patches/pugixml-versioned-libdir.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (pugixml)[source](patches): New field.
[arguments]: Instruct the build system to create a shared rather than static
library.
[native-inputs]: Add PKG-CONFIG.
 2019-03-10 21:44:25 +01:00
Marius Bakke e2bdf60982
gnu: FileZilla: Update to 3.41.1. 
* gnu/packages/ftp.scm (filezilla): Update to 3.41.1.
 2019-03-10 21:44:25 +01:00
Marius Bakke 6324727770
gnu: pugixml is a regular input. 
* gnu/packages/emulators.scm (mame)[native-inputs]: Move PUGIXML ...
[inputs]: ... here.
* gnu/packages/ftp.scm (filezilla)[native-inputs, inputs]: Likewise.
 2019-03-10 21:44:25 +01:00
Oleg Pykhalov e44de1d2fb
services: zabbix-front-end: Show location in messages. 
* gnu/services/monitoring.scm (zabbix-front-end-config): Show location in
messages.
 2019-03-10 21:32:38 +03:00
Oleg Pykhalov d132d9f96b
services: configuration: Add '%location'. 
* gnu/services/configuration.scm (define-configuration): Add '%location'.
 2019-03-10 21:32:38 +03:00
Marius Bakke a4de1a651e
gnu: double-conversion: Update to 3.1.3. 
* gnu/packages/maths.scm (double-conversion): Update to 3.1.3.
[source](uri): Adjust for version tag prefix.
 2019-03-10 18:38:51 +01:00
Marius Bakke 55f80e1592
gnu: libvdpau: Update to 1.2. 
* gnu/packages/video.scm (libvdpau): Update to 1.2.
[source](uri): Adjust for new URL.
 2019-03-10 18:38:51 +01:00
Marius Bakke 792737e9ab
gnu: subversion: Update to 1.10.4 [fixes CVE-2018-11803]. 
* gnu/packages/version-control.scm (subversion): Update to 1.10.4.
 2019-03-10 18:38:51 +01:00
Marius Bakke 1c4724634c
gnu: libuninameslist: Update to 20190305. 
* gnu/packages/fontutils.scm (libuninameslist): Update to 20190305.
 2019-03-10 18:38:50 +01:00
Marius Bakke 8c5533b582
Merge branch 'master' into staging 2019-03-10 18:38:25 +01:00
Marius Bakke 41ce92501b
gnu: xfd: Update to 1.1.3. 
* gnu/packages/xorg.scm (xfd): Update to 1.1.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke 06e3ed5d19
gnu: xprop: Update to 1.2.4. 
* gnu/packages/xorg.scm (xprop): Update to 1.2.4.
 2019-03-10 18:30:51 +01:00
Marius Bakke df8dbfb30b
gnu: notmuch: Update to 0.28.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.28.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke 2c0cf9eec7
gnu: xapian: Update to 1.4.11. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.11.
 2019-03-10 18:30:51 +01:00
Marius Bakke 511930c294
gnu: libmspack: Update to 0.10.1. 
* gnu/packages/compression.scm (libmspack): Update to 0.10.1.
 2019-03-10 18:30:50 +01:00
Marius Bakke 755226e9c2
gnu: python-dask: Update to 1.1.4. 
* gnu/packages/python-xyz.scm (python-dask): Update to 1.1.4.
 2019-03-10 18:30:50 +01:00
Marius Bakke f1fff66be5
gnu: elogind: Update to 239.4. 
* gnu/packages/freedesktop.scm (elogind): Update to 239.4.
 2019-03-10 18:30:50 +01:00
Tobias Geerinckx-Rice 6845ab5204
gnu: Import (gnu packages image) in (gnu packages scanner). 
This is a follow-up to commit 10bd2889d2.

* gnu/packages/scanner.scm: #:use-module (gnu packages image).
 2019-03-10 17:12:16 +01:00
Tobias Geerinckx-Rice 10bd2889d2
gnu: sane-backends: Support PNG scanimage output. 
* gnu/packages/scanner.scm (sane-backends)[inputs]: Add libpng.
 2019-03-10 16:33:55 +01:00
Ricardo Wurmus ca32afacf9
gnu: Add btanks. 
* gnu/packages/games.scm (btanks): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus d7764d42e4
gnu: Add libsmpeg-with-sdl1. 
* gnu/packages/video.scm (libsmpeg-with-sdl1): New variable.
(libsmpeg)[version]: Change to 0.4.5-401.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus 8ada024ba6
gnu: Add 4dtris. 
* gnu/packages/games.scm (4dtris): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus c06709b8a4
gnu: Add slingshot. 
* gnu/packages/games.scm (slingshot): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus 05487ed8e6
gnu: scons: Update to 3.0.4. 
* gnu/packages/python-xyz.scm (scons): Update to 3.0.4.
[arguments]: Remove second instance of "imp.load_module" (bug 34236).
 2019-03-10 14:04:28 +01:00
Tobias Geerinckx-Rice 4eb57ca883
gnu: Add opensmtpd-next. 
* gnu/packages/mail.scm (opensmtpd-next): New public variable.
 2019-03-10 13:37:18 +01:00
Tobias Geerinckx-Rice 380384e419
gnu: ibus: Update Unicode data to 12.0.0. 
* gnu/packages/ibus.scm (ibus)[native-inputs]: Use versioned URLs for
Unicode data and update hashes.
 2019-03-10 13:37:18 +01:00
Pierre Neidhardt 2b613a1a5d
gnu: hyperledger-fabric: Fix description, set supported system and parallel build. 
* gnu/packages/hyperledger.scm (hyperledger-fabric)[description]: Rephrase
into something less marketing-ish.
[arguments]: Build with multiple jobs.
[supported-systems]: Support x86_64-linux only.
 2019-03-09 12:30:24 +01:00
Ricardo Wurmus 7d4cab7473
gnu: Add openfst. 
* gnu/packages/machine-learning.scm (openfst): New variable.
 2019-03-09 10:43:37 +01:00
Pierre Neidhardt 983550692d
gnu: Add hyperledger-fabric. 
* gnu/local.mk (hyperledger): New variable.
 2019-03-09 10:15:46 +01:00
Ricardo Wurmus 2b0c755d19
gnu: gnome-shell: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.28.2.
[source]: Update snippet.
[build-system]: Use meson-build-system.
[arguments]: Disable systemd; add build phases "fix-keysdir" and "pre-check";
remove "rebuild-css" phase; remove custom "install" phase; wrap also with
LD_LIBRARY_PATH.
[native-inputs]: Add desktop-file-utils, sassc, and xorg-server.
[inputs]: Remove readline.
 2019-03-09 08:48:25 +01:00
Tobias Geerinckx-Rice 373abfb398
gnu: lynis: Update to 2.7.2. 
* gnu/packages/admin.scm (lynis): Update to 2.7.2.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7b957a3344
gnu: youtube-viewer: Update to "3.5.4. 
* gnu/packages/video.scm (youtube-viewer): Update to "3.5.4.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 37fc44eab9
gnu: dovecot: Avoid unnecessary patching. 
* gnu/packages/mail.scm (dovecot)[arguments]: Replace ‘pre-configure’
patching with custom ‘make install sysconfdir=…’.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice f762e49f28
gnu: dovecot: Indent arguments. 
* gnu/packages/mail.scm (dovecot)[arguments]: C-M-q and tuck left.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7969751f54
gnu: i3lock-color: Update to 2.12.c. 
* gnu/packages/wm.scm (i3lock-color): Update to 2.12.c.
[inputs]: Add xcb-util-xrm.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice f45cc966ba
gnu: i3lock-color: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-color)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice a48db08afe
gnu: i3lock-fancy: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-fancy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Ludovic Courtès d429878daf
activation: Shared system home directories are now 555 and root-owned. 
Fixes <https://bugs.gnu.org/34788>.
Reported by Jack Hill <jackhill@jackhill.us>.

Regression introduced by the combination of
8bb76f3d44 and
0ae735bcc8ff7fdc89d67b492bdee9091ee19e86: /var/empty would be 700 and
owned by one of the system accounts (thus inaccessible to others), and
/var/run/dbus would be 700 as well, thereby preventing D-Bus clients
from connecting to the daemon.

* gnu/build/activation.scm (duplicates): New procedure.
(activate-users+groups)[system-accounts]: New variable.
Use it.  Make shared system account home directories #o555 and
root-owned.
* gnu/services/dbus.scm (dbus-activation): Make /var/run/dbus #o755.
* gnu/tests/base.scm (run-basic-test): Test the ownership and
permissions of /var/empty.
 2019-03-08 23:21:59 +01:00
Ricardo Wurmus 74c2339fff
gnu: Add java-eclipse-jdt-compiler-apt. 
* gnu/packages/java.scm (java-eclipse-jdt-compiler-apt): New variable.
 2019-03-08 23:18:56 +01:00
Ricardo Wurmus 8b6acb1f20
gnu: blast+: Update to 2.7.1. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-08 23:00:07 +01:00
Ricardo Wurmus f87dcb4d75
gnu: Add texlive-latex-pdfx. 
* gnu/packages/tex.scm (texlive-latex-pdfx): New variable.
 2019-03-08 21:49:25 +01:00
Ricardo Wurmus cafd4d387b
gnu: Add texlive-latex-xmpincl. 
* gnu/packages/tex.scm (texlive-latex-xmpincl): New variable.
 2019-03-08 21:48:19 +01:00
Ricardo Wurmus 847768b9cc
gnu: Add translate2geda. 
* gnu/packages/engineering.scm (translate2geda): New variable.
 2019-03-08 21:45:29 +01:00
Ricardo Wurmus a734da8675
gnu: Add rkrlv2. 
* gnu/packages/music.scm (rkrlv2): New variable.
 2019-03-08 21:02:49 +01:00
Danny Milosavljevic eb6ef893e8
gnu: fc-host-tools: Update to 10. 
* gnu/packages/embedded.scm (fc-host-tools): Update to 10.
[arguments]<:make-flags>: Change INSTBIN to INSTALL_PREFIX.
 2019-03-08 19:33:04 +01:00
Efraim Flashner 606c198788
gnu: crawl: Find all the included headers. 
* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
change the path for some headers.
 2019-03-08 17:22:29 +02:00
Efraim Flashner b89284407f
gnu: crawl: Don't assume system architecture. 
This allows crawl to build on non-Intel architectures.

* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
remove x86* specific CFLAGS.
 2019-03-08 17:22:29 +02:00
Efraim Flashner fc7d6bc60d
gnu: crawl: Build with python3-wrapper. 
* gnu/packages/games.scm (crawl)[native-inputs replace python with
python-wrapper.
[arguments]: Remove custom 'patch-python phase.
 2019-03-08 17:22:26 +02:00
Vagrant Cascadian fb0aeaacea
gnu: u-boot: Remove openssl input. 
Fixes <https://bugs.gnu.org/34717>.

* gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs.
  (u-boot-tools): Disable FIT_SIGNATURES in tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-08 12:31:37 +01:00
Rutger Helling 75f0bda71a
gnu: flatpak: Add more dependencies. 
* gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add
"glib-networking", "gnupg" and "gsettings-desktop-schemas".
 2019-03-08 11:50:56 +01:00
Ricardo Wurmus daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
 2019-03-08 09:30:00 +01:00
Ricardo Wurmus 183b6575e7
gnu: r-mzr: Update to 2.16.2. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2.
[inputs]: Replace "boost" with "boost-for-mysql".
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 6453d7aecc
gnu: r-gviz: Update to 1.26.5. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 101dcc29d3
gnu: r-ensembldb: Update to 2.6.7. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d3713237c5
gnu: r-annotationhub: Update to 2.14.4. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 53e7f028ed
gnu: r-rhtslib: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d86b9eca56
gnu: r-genomicfeatures: Update to 1.34.4. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d493043daf
gnu: r-rtracklayer: Update to 1.42.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 57f40dc220
gnu: r-rsamtools: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus 58209b1e21
gnu: r-biocparallel: Update to 1.16.6. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus cd43ae3fd6
gnu: r-variantannotation: Update to 1.28.11. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus fff11bccc6
gnu: r-genomeinfodb: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus 8972989e10
gnu: r-dexseq: Update to 1.28.2. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2.
 2019-03-08 09:14:00 +01:00
Tobias Geerinckx-Rice 792d3ed7eb
gnu: man-pages: Update to 5.00. 
* gnu/packages/man.scm (man-pages): Update to 5.00.
[source]: Re-format.
 2019-03-08 01:35:42 +01:00
Tobias Geerinckx-Rice 13b1fb5c92
gnu: dovecot: Update to 2.3.5. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.
[arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from
‘patch-other-file-names’.
 2019-03-08 01:34:41 +01:00
Tobias Geerinckx-Rice 2fa1a3a808
gnu: dovecot: Don't use NAME in source URI. 
* gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME.
 2019-03-08 01:34:40 +01:00
Ricardo Wurmus 933dad9156
gnu: Add mruby. 
* gnu/packages/ruby.scm (mruby): New variable.
 2019-03-08 00:07:45 +01:00
Ricardo Wurmus 20662a3020
gnu: r-ggmap: Update to 3.0.0. 
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.0.
[propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr,
r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj,
r-proto, and r-reshape2.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus 8f37f53837
gnu: r-readxl: Update to 1.3.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus f544ab3379
gnu: r-sys: Update to 3.0. 
* gnu/packages/cran.scm (r-sys): Update to 3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus 790db519f4
gnu: r-servr: Update to 0.13. 
* gnu/packages/cran.scm (r-servr): Update to 0.13.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus e89d54278d
gnu: r-flextable: Update to 0.5.1. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.1.
[propagated-inputs]: Add r-data-table, r-magick, and r-rlang; remove r-r6 and
r-stringr.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus e190d9af6c
gnu: r-proxy: Update to 0.4-23. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-23.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus bef78244de
gnu: r-haven: Update to 2.1.0. 
* gnu/packages/cran.scm (r-haven): Update to 2.1.0.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 59c513422c
gnu: r-emdbook: Update to 1.3.11. 
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.11.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 937e15571c
gnu: r-rmysql: Update to 0.10.17. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.17.
[native-inputs]: Remove pkg-config.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 2170a36c3b
gnu: r-gower: Update to 0.2.0. 
* gnu/packages/cran.scm (r-gower): Update to 0.2.0.
[native-inputs]: Remove r-knitr.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 6e4a9b8365
gnu: r-ggsignif: Update to 0.5.0. 
* gnu/packages/cran.scm (r-ggsignif): Update to 0.5.0.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 532b359865
gnu: r-jomo: Update to 2.6-7. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-7.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus d2cd541cc7
gnu: r-mice: Update to 3.4.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.4.0.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 22777c8657
gnu: r-xfun: Update to 0.5. 
* gnu/packages/cran.scm (r-xfun): Update to 0.5.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 87bb1b8c9e
gnu: r-metap: Update to 1.1. 
* gnu/packages/cran.scm (r-metap): Update to 1.1.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus d8787b3387
gnu: r-ifultools: Update to 2.0-5. 
* gnu/packages/cran.scm (r-ifultools): Update to 2.0-5.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus cb40b6eb9b
gnu: r-radiant-data: Update to 0.9.9. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.9.
[propagated-inputs]: Add r-stringi; remove r-summarytools.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 00fb320392
gnu: r-later: Update to 0.8.0. 
* gnu/packages/cran.scm (r-later): Update to 0.8.0.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 8b2c80b8a3
gnu: r-vim: Update to 4.8.0. 
* gnu/packages/cran.scm (r-vim): Update to 4.8.0.
[propagated-inputs]: Add r-ranger.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus b9b1041324
gnu: r-fnn: Update to 1.1.3. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus ea010aa31e
gnu: r-arules: Update to 1.6-3. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-3.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus f5ce1dcce2
gnu: r-zip: Update to 2.0.0. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.0.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus bbe9421174
gnu: r-maptools: Update to 0.9-5. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-5.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus d3f22f0aea
gnu: r-reticulate: Update to 1.11.1. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.11.1.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus fd1a17a522
gnu: r-officer: Update to 0.3.3. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.3.
[propagated-inputs]: Add r-rlang.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 7754557090
gnu: r-prediction: Update to 0.3.6.2. 
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.2.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 3d5bcae0c2
gnu: r-abjutils: Update to 0.2.3. 
* gnu/packages/cran.scm (r-abjutils): Update to 0.2.3.
[propagated-inputs]: Add r-furrr, r-future, r-readr, and r-rlang; remove
r-plyr.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 1007b1b6d2
gnu: r-slam: Update to 0.1-45. 
* gnu/packages/cran.scm (r-slam): Update to 0.1-45.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus a431c38166
gnu: r-hash: Update to 2.2.6.1. 
* gnu/packages/cran.scm (r-hash): Update to 2.2.6.1.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus a6a87db8ce
gnu: r-dvmisc: Update to 1.1.3. 
* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.3.
[propagated-inputs]: Add r-cubature, r-data-table, r-dplyr, r-ggplot2,
r-mvtnorm, r-pracma, r-purrr, and r-survey.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 5093cbdc04
gnu: r-summarytools: Update to 0.9.2. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.2.
[propagated-inputs]: Add r-checkmate, r-dplyr, r-magick, and r-tidyr.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus b1f39e8c38
gnu: r-multcomp: Update to 1.4-10. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-10.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus e0f861649c
gnu: r-emmeans: Update to 1.3.3. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.3.
[propagated-inputs]: Add r-numderiv.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus e2fee46f04
gnu: r-afex: Update to 0.23-0. 
* gnu/packages/cran.scm (r-afex): Update to 0.23-0.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus f18ca07eef
gnu: r-lmertest: Update to 3.1-0. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-0.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 91f0b745f6
gnu: r-ks: Update to 1.11.4. 
* gnu/packages/cran.scm (r-ks): Update to 1.11.4.
[propagated-inputs]: Remove r-misc3d.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 0b14b100a2
gnu: r-tidytree: Update to 0.2.4. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 4bc5d45144
gnu: r-bigrquery: Update to 1.1.0. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.1.0.
[propagated-inputs]: Add r-bit64.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 8a05d17037
gnu: r-gmp: Update to 0.5-13.4. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 7706a98cda
gnu: r-huge: Update to 1.3.0. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.0.
[propagated-inputs]: Add r-rcpp and r-rcppeigen; remove r-lattice.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus f59cdeaf25
gnu: r-igraph: Update to 1.2.4. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus ed494a0acd
gnu: r-dplyr: Update to 0.8.0.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.0.1.
[native-inputs]: Move r-rcpp and r-bh from here...
[propagated-inputs]: ...to here; remove r-bindrcpp.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 6caf80fbaf
gnu: r-lme4: Update to 1.1-21. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-21.
[native-inputs]: Move r-rcpp and r-rcppeigen from here...
[propagated-inputs]: ...to here; add r-boot.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 34a98f79d7
gnu: r-forcats: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.4.0.
[propagated-inputs]: Add r-ellipsis.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 6a0a2342dd
gnu: r-r6: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.4.0.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 4b16c00e9a
gnu: r-formatr: Update to 1.6. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.6.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 1f7a76a0c1
gnu: r-evaluate: Update to 0.13. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.13.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 48a4b775b9
gnu: r-mgcv: Update to 1.8-27. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-27.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 71fe7f9d21
gnu: r-stringi: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.3.1.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 605fcf8a23
gnu: r-stringr: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.0.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 17abcd521a
gnu: r-ranger: Update to 0.11.2. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.2.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 9066534d4c
gnu: r-openssl: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.2.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus a1d9387d82
gnu: r-catools: Update to 1.17.1.2. 
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 4fadef3ba0
gnu: r-xml: Update to 3.98-1.19. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus bc7895e1cf
gnu: r-flexmix: Update to 2.3-15. 
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 6be62a5a72
gnu: r-irlba: Update to 2.3.3. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.3.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus b22a20405a
gnu: r-registry: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-registry): Update to 0.5-1.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 3db71d065c
gnu: r-r-utils: Update to 2.8.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 21886e730b
gnu: r-r-rsp: Update to 0.43.1. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.1.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus ed4100dc96
gnu: r-mvtnorm: Update to 1.0-10. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-10.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus ebd37b49f9
gnu: r-tidyr: Update to 0.8.3. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.3.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 84840deb95
gnu: r-purrr: Update to 0.3.1. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.1.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus b58220f599
gnu: r-pbapply: Update to 1.4-0. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus e51096b2ea
gnu: r-vgam: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-1.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus aeb11b7549
gnu: r-ggthemes: Update to 4.1.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus d235cf7268
gnu: r-shiny: Update to 1.2.0. 
* gnu/packages/cran.scm (r-shiny): Update to 1.2.0.
[arguments]: Adjust processing of minified JavaScript.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 83ef38b038
gnu: r-epi: Update to 2.35. 
* gnu/packages/cran.scm (r-epi): Update to 2.35.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 75cbc80037
gnu: r-network: Update to 1.14-377. 
* gnu/packages/cran.scm (r-network): Update to 1.14-377.
[propagated-inputs]: Add r-magrittr and r-tibble.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus fadc49c6e5
gnu: r-vegan: Update to 2.5-4. 
* gnu/packages/cran.scm (r-vegan): Update to 2.5-4.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus d1c2fd8eeb
gnu: r-future-apply: Update to 1.2.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.2.0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 6e8b38d3e8
gnu: Add r-furrr. 
* gnu/packages/cran.scm (r-furrr): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus f0bff69873
gnu: Add r-survey. 
* gnu/packages/cran.scm (r-survey): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus dab3e92c94
gnu: Add r-magick. 
* gnu/packages/cran.scm (r-magick): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus 3f22a115bd
gnu: Add r-ellipsis. 
* gnu/packages/cran.scm (r-ellipsis): New variable.
 2019-03-07 23:52:35 +01:00
Pierre Neidhardt d748cb5f47
gnu: Add autorandr. 
* gnu/packages/xdisorg.scm (autorandr): New variable.
 2019-03-07 22:23:38 +01:00
Julien Lepiller 945723be97
gnu: php: Update to 7.3.3. 
* gnu/packages/php.scm (php): Update to 7.3.3.
 2019-03-07 21:18:30 +01:00
Efraim Flashner dcf4d01f30
gnu: libmicrohttpd: Enable parallel tests. 
* gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Don't disable
parallel tests.
 2019-03-07 22:00:53 +02:00
Efraim Flashner c4bfce994e
gnu: libmicrohttpd: Update to 0.9.63. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.63.
[arguments]: Remove custom phase to add missing LDFLAGS.
 2019-03-07 22:00:53 +02:00
Efraim Flashner 0ef54303f3
gnu: c-graph: Update to 2.0.1. 
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
 2019-03-07 22:00:52 +02:00
Ludovic Courtès 0ae735bcc8
activation: Build account databases with (gnu build accounts). 
* gnu/build/activation.scm (enumerate, current-users, current-groups)
(add-group, add-user, modify-user, ensure-user): Remove.
(activate-users+groups)[touch, activate-user]: Remove.
[make-home-directory]: New procedure.
Rewrite in terms of 'user+group-databases', 'write-group', etc.
* gnu/build/install.scm (directives): Remove "/root".
* gnu/system/shadow.scm (account-activation): Remove (setenv "PATH" ...)
expression, which is now unneeded.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès ec600e4544
Add (gnu build accounts). 
* gnu/build/accounts.scm, tests/accounts.scm: New files.
* Makefile.am (SCM_TESTS): Add tests/accounts.scm.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès 6061d01512
activation: Operate on <user-account> and <user-group> records. 
* gnu/system/accounts.scm (sexp->user-group, sexp->user-account): New
procedures.
* gnu/system/shadow.scm (account-activation): Call them in the arguments
to 'activate-users+groups'.
(account-shepherd-service): Likewise.
* gnu/build/activation.scm (activate-users+groups): Expect a list of
<user-account> and a list of <user-group>.  Replace uses of 'match' on
tuples with calls to record accessors.
(activate-user-home): Likewise.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès f6f67b87c0
system: Add (gnu system accounts). 
The (gnu system accounts) module is meant to be used both on the build-
and on the host-side.

* gnu/system/shadow.scm <top level>: Call 'default-shell'.
(<user-account>, <user-group>): Move to...
* gnu/system/accounts.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm.
 2019-03-07 20:04:02 +01:00
Pierre Neidhardt b60e9fb82f
gnu: fuseiso: Fix typo in description. 
* gnu/packages/linux.scm (fuseiso)[description]: Fix typo.
 2019-03-07 17:12:46 +01:00
Tobias Geerinckx-Rice 1e1142d8cb
gnu: Add nullmailer. 
* gnu/packages/mail.scm (nullmailer): New public variable.
 2019-03-07 15:39:46 +01:00
Ricardo Wurmus 4d0e085bea
gnu: gnome-settings-daemon: Ensure RUNPATH contains library subdir. 
* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Pass configure
flag to add $out/lib/gnome-settings-daemon-3.0 to RUNPATH.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 34c44a34ab
gnu: eog: Ensure RUNPATH contains output library directory. 
* gnu/packages/gnome.scm (eog)[arguments]: Pass configure flag to add
$out/lib/eog to RUNPATH.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus a6d378e2e7
gnu: cups-filters: Fix build with newer version of poppler. 
* gnu/packages/cups.scm (cups-filters)[arguments]: Add build phase
"patch-for-poppler".
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 294ff39d27
gnu: dconf-editor: Update to 3.28.0. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.28.0.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin and vala.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 9f475e3c3f
gnu: network-manager-applet: Update to 1.8.14. 
* gnu/packages/gnome.scm (network-manager-applet): Update to 1.8.14.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 0310eb966b
gnu: network-manager-openvpn: Update to 1.8.4. 
* gnu/packages/gnome.scm (network-manager-openvpn): Update to 1.8.4.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus fc984c8596
gnu: gnome-online-accounts: Update to 3.28.0. 
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.28.0.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus bb10e7c817
gnu: evolution-data-server: Update to 3.28.3. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.28.3.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 0a76f2bd3b
gnu: gdm: Update to 3.28.2. 
* gnu/packages/gnome.scm (gdm): Update to 3.28.2.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus 59dac02602
gnu: gnome-control-center: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.28.2.
[build-system]: Use meson-build-system.
[arguments]: Add configure flags.
[native-inputs]: Add gkt+:bin.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus caf6c3637b
gnu: nautilus: Update to 3.28.1. 
* gnu/packages/gnome.scm (nautilus): Update to 3.28.1.
[inputs]: Add gexiv2.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus fd3b117173
gnu: gnome-bluetooth: Update to 3.28.0. 
* gnu/packages/gnome.scm (gnome-bluetooth): Update to 3.28.0.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus c8bdf589c9
gnu: tracker: Update to 2.0.4. 
* gnu/packages/gnome.scm (tracker): Update to 2.0.4.
[arguments]: Add phases "disable-broken-tests" and "pre-check"; enable tests.
[inputs]: Remove nettle, add python.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus 8356aefafc
gnu: gnome-screenshot: Update to 3.26.0. 
* gnu/packages/gnome.scm (gnome-screenshot): Update to 3.26.0.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin, desktop-file-utils, and appstream-glib.
 2019-03-07 13:43:17 +01:00
Ricardo Wurmus 80d1e4c0f7
gnu: gnome-clocks: Update to 3.28.0. 
* gnu/packages/gnome.scm (gnome-clocks): Update to 3.28.0.
 2019-03-07 13:43:17 +01:00
Ricardo Wurmus 9f3c6c8825
gnu: gnome-todo: Update to 3.28.1. 
* gnu/packages/gnome.scm (gnome-todo): Update to 3.28.1.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/gnome-todo-libical-compat.patch: Remove file.
 2019-03-07 13:43:17 +01:00
Ricardo Wurmus a286b5ebda
gnu: gnome-calendar: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-calendar): Update to 3.28.2.
[inputs]: Add libdazzle, libgweather, and geoclue.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 100f625b83
gnu: gnome-shell-extensions: Update to 3.28.1. 
* gnu/packages/gnome.scm (gnome-shell-extensions): Update to 3.28.1.
[build-system]: Use meson-build-system.
[arguments]: Adjust.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 4a3f6e02a1
gnu: libgnomekbd: Update to 3.26.0. 
* gnu/packages/gnome.scm (libgnomekbd): Update to 3.26.0.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 112e908323
gnu: gnome-calculator: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.28.2.
[inputs]: Add glib and libxml2; replace gtksourceview with gtksourceview-3.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus c60063ea56
gnu: gucharmap: Update to 10.0.4. 
* gnu/packages/gnome.scm (gucharmap): Update to 10.0.4.
[arguments]: Add phase "prepare-unicode-data".
[native-inputs]: Add unicode files.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 4985d9aa93
gnu: gnome-system-monitor: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-system-monitor): Update to 3.28.2.
[native-inputs]: Add polkit.
[inputs]: Add libwnck.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 84548bd7fa
gnu: python-pyatspi: Update to 2.26.0. 
* gnu/packages/gnome.scm (python-pyatspi): Update to 2.26.0.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 5055d385ff
gnu: mutter: Update to 3.28.2. 
* gnu/packages/gnome.scm (mutter): Update to 3.28.2.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus f8e2b57781
gnu: zenity: Update to 3.28.1. 
* gnu/packages/gnome.scm (zenity): Update to 3.28.1.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus df27807185
gnu: gnome-session: Update to 3.28.1. 
* gnu/packages/gnome.scm (gnome-session): Update to 3.28.1.
[build-system]: Use meson-build-system.
[arguments]: Adjust "pre-configure" phase; update configure flags.
[native-inputs]: Add libxml2, docbook-xsl, docbook-xml, and xmlto.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 45f80fce92
gnu: network-manager: Update to 1.10.10. 
* gnu/packages/gnome.scm (network-manager): Update to 1.10.10.
[arguments]: Add phase "delete-failing-tests"; use INVOKE in the install
phase.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 6a19f03e8b
gnu: cheese: Propagate more inputs. 
* gnu/packages/gnome.scm (cheese)[inputs]: Move clutter, libcanberra, and
gstreamer from here...
[propagated-inputs]: ...to here.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 870a4e70ec
gnu: orca: Update to 3.28.1. 
* gnu/packages/gnome.scm (orca): Update to 3.28.1.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 7271781738
gnu: gjs: Update to 1.52.3. 
* gnu/packages/gnome.scm (gjs): Update to 1.52.3.
[propagated-inputs]: Replace mozjs-38 with mozjs-52.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 5dd12afcfb
gnu: devhelp: Update to 3.28.1. 
* gnu/packages/gnome.scm (devhelp): Update to 3.28.1.
[native-inputs]: Add itstool.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 8c0fab36d8
gnu: gnome-mines: Update to 3.28.0. 
* gnu/packages/gnome.scm (gnome-mines): Update to 3.28.0.
[build-system]: Use meson-build-system.
[arguments]: Delete "bootstrap" phase; remove "patch-/bin/true" phase.
[native-inputs]: Add glib:bin, vala, yeld, and appstream-glib; remove libxml2.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus d953418aee
gnu: librsvg: Build Vala bindings. 
* gnu/packages/gnome.scm (librsvg)[arguments]: Enable building of Vala
bindings.
[native-inputs]: Add vala.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 0ab9f949da
gnu: gvfs: Update to 1.36.2. 
* gnu/packages/gnome.scm (gvfs): Update to 1.36.2.
[arguments]: Add phase "remove-broken-autogen-script".
[native-inputs]: Add autoconf, automake, gettext-minimal, gtk-doc, and
libtool.
[inputs]: Add libimobiledevice.
 2019-03-07 13:41:29 +01:00
Ricardo Wurmus ab35cc6e5b
gnu: gnome-keyring: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.28.2.
[arguments]: Replace "pre-check" phase with "fix-/bin/sh-reference".
[inputs]: Add openssh.
 2019-03-07 13:41:29 +01:00
Ricardo Wurmus dd7a244614
gnu: libgnome-games-support: Update to 1.4.1. 
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.4.1.
 2019-03-07 13:41:29 +01:00
Ricardo Wurmus b78f511817
gnu: libgudev: Update to 232. 
* gnu/packages/gnome.scm (libgudev): Update to 232.
[arguments]: Add configure flags to cut recursive dependency.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus 61fb581fbb
gnu: eog: Update to 3.28.2. 
* gnu/packages/gnome.scm (eog): Update to 3.28.2.
[build-system]: Use meson-build-system.
[native-inptus]: Add gtk+:bin.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus 1e9b19dd1f
gnu: totem-pl-parser: Update to 3.26.1. 
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.26.1.
[build-system]: Use meson-build-system.
[inputs]: Move libarchive and libgcrypt from here...
[propagated-inputs]: ...to here.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus e644f9fa49
gnu: gnome-settings-daemon: Update to 3.28.1. 
* gnu/packages/gnome.scm (gnome-settings-daemon): Update to 3.28.1.
[build-system]: Use meson-build-system.
[arguments]: Override udev rules directory with configure flags.
[native-inputs]: Add glib:bin.
[inputs]: Add alsa-lib, colord, and wayland.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus cf6cbc34f5
gnu: libgweather: Update to 3.28.2. 
* gnu/packages/gnome.scm (libgweather): Update to 3.28.2.
[build-system]: Use meson-build-system.
[arguments]: Disable tests; adjust configure flags; remove custom build
phases.
[inputs]: Move libsoup and geocode-glib from here...
[propagated-inputs]: ...to here.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus a7dd0c02cc
gnu: geocode-glib: Update to 3.26.0. 
* gnu/packages/gnome.scm (geocode-glib): Update to 3.26.0.
[build-system]: Use meson-build-system.
[arguments]: Enable tests; add phase "set-locales".
[native-inputs]: Add glibc-locales, gettext-minimal, and gtk-doc.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus 83232ba2c8
gnu: five-or-more: Update to 3.28.0. 
* gnu/packages/gnome.scm (five-or-more): Update to 3.28.0.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus c6571adb09
gnu: glade3: Update to 3.22.1. 
* gnu/packages/gnome.scm (glade3): Update to 3.22.1.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 3b5d5b4a9f
gnu: adwaita-icon-theme: Update to 3.28.0. 
* gnu/packages/gnome.scm (adwaita-icon-theme): Update to 3.28.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 934cc5691a
gnu: gsettings-desktop-schemas: Update to 3.28.0. 
* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 3.28.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 0daf0efbe6
gnu: gcr: Update to 3.28.0. 
* gnu/packages/patches/gcr-disable-failing-tests.patch,
gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch:
Remove files.
* gnu/local.mk (dist_patch_DATA): Remove patches.
* gnu/packages/gnome.scm (gcr): Update to 3.28.0.
[arguments]: Add phase "disable-failing-tests"; rewrite "pre-check" phase.
[native-inputs]: Add libxml2.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 9863ce205d
gnu: gnome-desktop: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-desktop): Update to 3.28.2.
[inputs]: Add libseccomp.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 5ba1781915
gnu: libproxy: Remove network-manager. 
This is necessary to break a dependency cycle.

* gnu/packages/networking.scm (libproxy)[inputs]: Remove network-manager.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 78ac232e79
gnu: gnome-maps: Update to 3.28.2. 
* gnu/packages/geo.scm (gnome-maps): Update to 3.28.2.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 1258112a27
gnu: glibmm: Update to 2.56.0. 
* gnu/packages/glib.scm (glibmm): Update to 2.56.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus b54c22898d
gnu: gedit: Use gtksourceview-3. 
* gnu/packages/gnome.scm (gedit)[inputs]: Replace "gtksourceview" with
"gtksourceview-3".
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 0a500745c7
gnu: file-roller: Update to 3.28.0. 
* gnu/packages/gnome.scm (file-roller): Update to 3.28.0.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils, gtk+:bin, and glib:bin.
[arguments]: Remove.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 2089bca52a
gnu: yelp-tools: Update to 3.28.0. 
* gnu/packages/gnome.scm (yelp-tools): Update to 3.28.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 7c2139005b
gnu: yelp-xsl: Update to 3.28.0. 
* gnu/packages/gnome.scm (yelp-xsl): Update to 3.28.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus ef7f084fe5
gnu: yelp: Update to 3.28.1. 
* gnu/packages/gnome.scm (yelp): Update to 3.28.1.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus 8c5b884c34
gnu: at-spi2-core: Update to 2.28.0. 
* gnu/packages/gtk.scm (at-spi2-core): Update to 2.28.0.
[build-system]: Use meson-build-system.
[arguments]: Adjust configure-flags; add build phases: set-documentation-path,
prepare-doc-directory, move-documentation; move check phase after install.
[native-inputs]: Add gtk-doc and glib:bin.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus 7a1bb44a5d
gnu: gtk-doc: Update to 1.28. 
* gnu/packages/gtk.scm (gtk-doc): Update to 1.28.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus c5989b03ea
gnu: Add gtksourceview-3. 
* gnu/packages/gtk.scm (gtksourceview-3): New variable.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus 9dcb6fca41
gnu: gtksourceview: Update to 4.0.2. 
* gnu/packages/gtk.scm (gtksourceview): Update to 4.0.2.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus 3189fad217
gnu: neovim: Let build phase return #T. 
* gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase.
 2019-03-07 13:39:45 +01:00
Ricardo Wurmus 3b296475bf
gnu: cd-hit: Support longer sequences. 
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
flags.
 2019-03-07 13:38:01 +01:00
Ricardo Wurmus 237ee6f2b2
gnu: python2-fastlmm: Disable tests. 
* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable
tests.
 2019-03-07 13:37:58 +01:00
Rutger Helling 9fd6ad3e35
gnu: wireguard: Update to 0.0.20190227. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227.
[arguments]: Disable tests.
 2019-03-07 12:23:43 +01:00
Rutger Helling 9cb4bda222
gnu: nftables: Update to 0.9.0. 
* gnu/packages/linux.scm (nftables): Update to 0.9.0.
[arguments]: Add "--disable-man-doc" configure flag.
 2019-03-07 12:08:21 +01:00
Kei Kebreau ccf2446730
gnu: minetest: Update to 5.0.0. 
* gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0.
 2019-03-07 05:31:19 -05:00
Gábor Boskovits 0a10abf73e
gnu: neovim: Fix #34616. 
This fixes a segmentation fault in neovim, where an error return value
is passed in as a pointer.

* gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase.
 2019-03-07 11:08:31 +01:00
Rutger Helling 9776417246
gnu: vulkan-tools: Update to 1.1.102. 
* gnu/packages/vulkan.scm (vulkan-tools): Update to 1.1.102.
[arguments]: Remove "-DBUILD_ICD=OFF" configure flag.
 2019-03-07 10:42:27 +01:00
Gábor Boskovits 2702aa9136
gnu: unibilium: Update to 2.0.0. 
* gnu/packages/terminal.scm (unibilium): Update to 2.0.0.
[native-inputs]: Add perl.
 2019-03-07 09:48:03 +01:00
Tobias Geerinckx-Rice abe6e670d3
gnu: sane-backends-minimal: Fix USB support. 
* gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace
libusb-compat with libusb.
[arguments]: Disable tests that require USB access.
 2019-03-07 02:13:26 +01:00
Mark H Weaver 274fa49100
gnu: linux-libre: Update to 5.0. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.
(%linux-libre-hash): Update hash.
(%linux-libre-4.20-patches): Rename to ...
(%linux-libre-5.0-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2019-03-06 17:51:55 -05:00
Mark H Weaver 9870f3ec61
gnu: linux-libre@4.19: Update to 4.19.27. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27.
(%linux-libre-4.19-hash): Update hash.
 2019-03-06 17:51:12 -05:00
Mark H Weaver 1b1a6c028b
gnu: linux-libre@4.14: Update to 4.14.105. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.105.
(%linux-libre-4.14-hash): Update hash.
 2019-03-06 17:50:21 -05:00
Mark H Weaver 7850fa891d
gnu: linux-libre@4.9: Update to 4.9.162. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.162.
 2019-03-06 17:49:26 -05:00
Ricardo Wurmus fc240e7e05
gnu: synthv1: Update to 0.9.5. 
* gnu/packages/music.scm (synthv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus 6ef147bd1d
gnu: drumkv1: Update to 0.9.5. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus cf6195906c
gnu: samplv1: Update to 0.9.5. 
* gnu/packages/music.scm (samplv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus 4b159add6f
gnu: padthv1: Update to 0.9.5. 
* gnu/packages/music.scm (padthv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus d935f69b11
gnu: yoshimi: Update to 1.5.10.2. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.10.2.
 2019-03-06 22:26:06 +01:00
Vagrant Cascadian 01d8a2a3d9
gnu: electron-cash: Update to 3.3.6. 
* gnu/packages/finance (electron-cash): Update to 3.3.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-06 16:06:26 -05:00
Vagrant Cascadian 307603dd88
gnu: electrum: Update to 3.3.4. 
* gnu/packages/finance (electrum): Update to 3.3.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-06 16:06:26 -05:00
Vagrant Cascadian 11599cff1e
gnu: diffoscope: Update to 113. 
* gnu/packages/package-management (diffoscope): Update to 113.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-06 22:05:07 +01:00
Ricardo Wurmus 61e265d294
gnu: Add multitime. 
* gnu/packages/benchmark.scm (multitime): New variable.
 2019-03-06 21:55:14 +01:00
Ricardo Wurmus 8035819f4c
gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
 2019-03-06 21:43:33 +01:00
Ricardo Wurmus d56df35a25
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
 2019-03-06 21:42:39 +01:00
Ricardo Wurmus f8780e96ff
gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
 2019-03-06 21:41:48 +01:00
Ricardo Wurmus 3a08940e1a
gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
 2019-03-06 21:35:20 +01:00
Ricardo Wurmus 7bc5d1b0e1
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Move from here...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
...to here.
 2019-03-06 21:33:17 +01:00
Ricardo Wurmus 13dabd6947
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
...to here.
 2019-03-06 21:31:41 +01:00
Ricardo Wurmus 0c792ffbd1
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
 2019-03-06 21:30:30 +01:00
Ricardo Wurmus b7d93cf508
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
 2019-03-06 21:29:20 +01:00
Ricardo Wurmus c3adc83054
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
 2019-03-06 21:26:54 +01:00
Ricardo Wurmus 5acb9052cf
gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
 2019-03-06 21:25:18 +01:00